RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5910
(225 letters)
>d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]}
Length = 364
Score = 154 bits (391), Expect = 2e-46
Identities = 108/245 (44%), Positives = 151/245 (61%), Gaps = 23/245 (9%)
Query: 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLK----------------SKNIYLEKSNILL 45
LD ++IGQ + KK+ SV VYNHYKRL + + + L KSNILL
Sbjct: 14 VLDNYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILL 73
Query: 46 VGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAE 105
+GPTG GKTLM +TLAK +++PI + DATS TEAGYVG+DVE+I+ +LL D++V+ A+
Sbjct: 74 IGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQ 133
Query: 106 QSIIYIDEIDKISKKTDVVS-GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164
+ I++IDEIDKIS+ ++ S +DVSGEGVQQ+LLK++EG ++I +K+P
Sbjct: 134 KGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEG--NF 191
Query: 165 FNIDTTNILFIAGGAFSGIENFIINRINQ----ETNFLEKLNNNYNLICETNTEDLINFG 220
IDT++ILFI GAF G+ I R Q T ++ T DL+ +G
Sbjct: 192 IQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYG 251
Query: 221 IIPVL 225
+IP L
Sbjct: 252 LIPEL 256
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 149 bits (377), Expect = 2e-43
Identities = 58/214 (27%), Positives = 87/214 (40%), Gaps = 17/214 (7%)
Query: 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
ELD+HIIGQ + K+ V++ + N ++R+ L + + NIL++GPTG GKT + + LA
Sbjct: 11 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 70
Query: 62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIY----------- 110
K+ N P I V+AT FTE GYVG +V+SII+ L V E +
Sbjct: 71 KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERI 130
Query: 111 IDEIDKISKKTDV-VSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFN--- 166
+D + +K V D Q KL EG +
Sbjct: 131 LDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGVSMGVEIMAPP 190
Query: 167 --IDTTNILFIAGGAFSGIENFIINRINQETNFL 198
+ TN L + ++
Sbjct: 191 GMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKA 224
Score = 43.6 bits (102), Expect = 7e-06
Identities = 36/98 (36%), Positives = 51/98 (52%), Gaps = 19/98 (19%)
Query: 105 EQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQV 164
+ I++IDEIDKI KK + SG DVS EGVQ+ LL L+EG ++++ K
Sbjct: 249 QNGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEG-----STVSTKHGM------ 296
Query: 165 FNIDTTNILFIAGGAF-----SGIENFIINRINQETNF 197
+ T +ILFIA GAF S + + R+
Sbjct: 297 --VKTDHILFIASGAFQVARPSDLIPELQGRLPIRVEL 332
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 134 bits (337), Expect = 9e-39
Identities = 79/181 (43%), Positives = 110/181 (60%), Gaps = 15/181 (8%)
Query: 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
ELD+HIIGQ + K+ V++ + N ++R+ L + + NIL++GPTG GKT + + LA
Sbjct: 11 ELDQHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLA 70
Query: 62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ-SIIYIDEIDKISKK 120
K+ N P I V+AT FTE GYVG +V+SII+ L ++ EQ I++IDEIDKI KK
Sbjct: 71 KLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKK 130
Query: 121 TDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNILFIAGGAF 180
+ DVS EGVQ+ LL L+EG +S K+ + T +ILFIA GAF
Sbjct: 131 GEYSGA-DVSREGVQRDLLPLVEGSTVST------KHG-------MVKTDHILFIASGAF 176
Query: 181 S 181
Sbjct: 177 Q 177
>d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Thermus thermophilus [TaxId: 274]}
Length = 247
Score = 72.6 bits (178), Expect = 3e-16
Identities = 41/174 (23%), Positives = 71/174 (40%), Gaps = 38/174 (21%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLE-----KSNILLVGPTGCGKTLMVKTLA 61
+ G E K+ + + + LK+ + + E +LLVGP G GKT + + +A
Sbjct: 11 VAGAEEAKEELK-------EIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVA 63
Query: 62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ---SIIYIDEIDKI- 117
VP I + F E +VG + ++ L E A++ I++IDEID +
Sbjct: 64 GEARVPFITASGSDFVE-MFVGVG-AARVRDLF-------ETAKRHAPCIVFIDEIDAVG 114
Query: 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTN 171
K+ V G + E LL ++G ++ + + TN
Sbjct: 115 RKRGSGVGGGNDEREQTLNQLLVEMDGFE-------------KDTAIVVMAATN 155
>d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 315
Score = 69.9 bits (170), Expect = 9e-15
Identities = 26/173 (15%), Positives = 62/173 (35%), Gaps = 17/173 (9%)
Query: 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
L + GQ + + ++ + L + + + L GPTG GKT + L+
Sbjct: 19 RLKMLVFGQDKAIEALTEAIKMARAGL-----GHEHKPVGSFLFAGPTGVGKTEVTVQLS 73
Query: 62 KIINVPIIVVDATSFTE-----------AGYVGDDVESIIQKLLHECDYDVELAEQSIIY 110
K + + ++ D + + E GYVG D ++ + + + V L ++
Sbjct: 74 KALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKA 133
Query: 111 IDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQ 163
++ I + + +G G + ++ + + ++
Sbjct: 134 HPDVFNILLQV-MDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIH 185
>d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH
{Escherichia coli [TaxId: 562]}
Length = 256
Score = 68.3 bits (167), Expect = 2e-14
Identities = 40/174 (22%), Positives = 70/174 (40%), Gaps = 38/174 (21%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLE-----KSNILLVGPTGCGKTLMVKTLA 61
+ G E K+ V+ + + L+ + + + +L+VGP G GKTL+ K +A
Sbjct: 14 VAGCDEAKEEVA-------ELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIA 66
Query: 62 KIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQ---SIIYIDEIDKI- 117
VP + + F E +VG S ++ + E A++ II+IDEID +
Sbjct: 67 GEAKVPFFTISGSDFVE-MFVGVG-ASRVRDMF-------EQAKKAAPCIIFIDEIDAVG 117
Query: 118 SKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTN 171
++ + G E +L ++G N + I TN
Sbjct: 118 RQRGAGLGGGHDEREQTLNQMLVEMDGFE-------------GNEGIIVIAATN 158
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 65.5 bits (159), Expect = 2e-13
Identities = 35/133 (26%), Positives = 55/133 (41%), Gaps = 26/133 (19%)
Query: 2 ELDRHIIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
EL + ++GQ E + V+ + L K+ + L +GPTG GKT + KTLA
Sbjct: 20 ELHKRVVGQDEAIRAVADAIRRARAGL-----KDPNRPIGSFLFLGPTGVGKTELAKTLA 74
Query: 62 KII---NVPIIVVDATSFTE-----------AGYVGDDVESIIQKLLHECDYDVELAEQS 107
+ +I +D T + E GYVG + + + + Y S
Sbjct: 75 ATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRPY-------S 127
Query: 108 IIYIDEIDKISKK 120
+I DEI+K
Sbjct: 128 VILFDEIEKAHPD 140
>d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 283
Score = 59.8 bits (143), Expect = 2e-11
Identities = 20/105 (19%), Positives = 41/105 (39%), Gaps = 3/105 (2%)
Query: 38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
L L++G GK+ ++K +N+P I +D F E Y+ + + +L E
Sbjct: 27 LRAPITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYI--SYKDFLLELQKEI 84
Query: 98 DYDVELAEQSIIYIDEIDKISKKTDVVSGK-DVSGEGVQQSLLKL 141
+ V+ + + I I + + + +LL+
Sbjct: 85 NKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLES 129
>d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId:
161736]}
Length = 321
Score = 57.7 bits (139), Expect = 1e-10
Identities = 17/134 (12%), Positives = 36/134 (26%), Gaps = 24/134 (17%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAKIIN--VPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
+++ G GKT +V L + + V GY D + +
Sbjct: 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLS-GYNTDF-NVFVDDIAR-- 178
Query: 98 DYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKN 157
+ + +I ID + + + G L++
Sbjct: 179 ----AMLQHRVIVIDSLKNVIGAAGGNTTSGGISRGAFD--------------LLSDIGA 220
Query: 158 PSQNPQVFNIDTTN 171
+ + I + N
Sbjct: 221 MAASRGCVVIASLN 234
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 55.8 bits (134), Expect = 6e-10
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 3/85 (3%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDY 99
K L GP GKT + L ++ + V+ +G ++ + + +
Sbjct: 154 KRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAIDQFLV-VFEDVKG 212
Query: 100 DVELAEQ--SIIYIDEIDKISKKTD 122
+ S I+ +D + D
Sbjct: 213 TGGESRDLPSGQGINNLDNLRDYLD 237
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 50.7 bits (120), Expect = 2e-08
Identities = 26/114 (22%), Positives = 49/114 (42%), Gaps = 22/114 (19%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
IGQ K+ + V + R L+ ++LL GP G GKT + +A + V
Sbjct: 11 YIGQERLKQKLRVYLEAAKARKEPLE---------HLLLFGPPGLGKTTLAHVIAHELGV 61
Query: 67 PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
+ V + + G + + + ++ E I++IDEI ++S++
Sbjct: 62 NLRVTSGPAIEKPGDLAAILANSLE-------------EGDILFIDEIHRLSRQ 102
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 48.8 bits (115), Expect = 1e-07
Identities = 15/153 (9%), Positives = 40/153 (26%), Gaps = 7/153 (4%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
LL G G GKT + + + +IV+D +F + + + +++ + V
Sbjct: 35 FLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQHP---NFDELVKLYEKDVVKHVT 91
Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNP 162
+ + ++V V +++ + +
Sbjct: 92 PYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVPIQTATMLQAKGYET----KMYVMAVPK 147
Query: 163 QVFNIDTTNILFIAGGAFSGIENFIINRINQET 195
+ T + +
Sbjct: 148 INSYLGTIERYETMYADDPMTARATPKQAHDIV 180
>d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 265
Score = 47.5 bits (112), Expect = 3e-07
Identities = 37/219 (16%), Positives = 69/219 (31%), Gaps = 27/219 (12%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
I G + K+ + V + + K +L GP GCGKTL+ K +A
Sbjct: 9 IGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKG-VLFYGPPGCGKTLLAKAIANECQA 67
Query: 67 PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKI-SKKTDVVS 125
I + + G+ + + E A +++ DE+D I + +
Sbjct: 68 NFISIKGPELLT-MWFGES-----EANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 121
Query: 126 GKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQNPQVFNIDTTNIL------FIAGGA 179
+ + V +L ++G+ S VF I TN + G
Sbjct: 122 DGGGAADRVINQILTEMDGM-------------STKKNVFIIGATNRPDIIDPAILRPGR 168
Query: 180 FSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLIN 218
+ + L+ + + + E L
Sbjct: 169 LDQLIYIPLPDEKSRVAILKANLRKSPVAKDVDLEFLAK 207
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase,
BchI {Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 44.5 bits (104), Expect = 4e-06
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 21/74 (28%)
Query: 7 IIGQHETKK---IVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKI 63
I+GQ + K + +V +L+ G G GK+ V+ LA +
Sbjct: 9 IVGQEDMKLALLLTAVDPGIG-----------------GVLVFGDRGTGKSTAVRALAAL 51
Query: 64 INVPIIVVDATSFT 77
+ I V+ +
Sbjct: 52 LP-EIEAVEGCPVS 64
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 41.9 bits (97), Expect = 2e-05
Identities = 28/121 (23%), Positives = 45/121 (37%), Gaps = 15/121 (12%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
IGQ KK +S+ + R +L ++LL GP G GKT + +A +
Sbjct: 11 FIGQENVKKKLSLALEAAKMRGEVL---------DHVLLAGPPGLGKTTLAHIIASELQT 61
Query: 67 PIIVVDATSFTEAGYVGDDVE------SIIQKLLHECDYDVELAEQSIIYIDEIDKISKK 120
I V + G + + + +H + VE S I +ID + K
Sbjct: 62 NIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIGK 121
Query: 121 T 121
Sbjct: 122 G 122
>d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 387
Score = 42.0 bits (98), Expect = 3e-05
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 11/85 (12%)
Query: 39 EKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF------TEAGYVGDDVESI 89
K+N +L+G G GKT +V+ LA+ I +VP + AG
Sbjct: 42 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGA--KYRGEF 99
Query: 90 IQKLLHECDYDVELAEQSIIYIDEI 114
++L V+ + I++IDE+
Sbjct: 100 EERLKAVIQEVVQSQGEVILFIDEL 124
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 41.1 bits (95), Expect = 4e-05
Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
+LL GP GKT + +A+ N P I + + G+ ++K+ +
Sbjct: 43 VLLEGPPHSGKTALAAKIAEESNFPFIKICS-PDKMIGFSETAKCQAMKKIFDDAYK--- 98
Query: 103 LAEQSIIYIDEIDKISKK 120
++ S + +D+I+++
Sbjct: 99 -SQLSCVVVDDIERLLDY 115
>d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 258
Score = 39.6 bits (91), Expect = 1e-04
Identities = 25/120 (20%), Positives = 47/120 (39%), Gaps = 7/120 (5%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
+ G + + V + L K+ + + ILL GP G GKTL+ + +A
Sbjct: 6 VGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRG-ILLYGPPGTGKTLIARAVANETGA 64
Query: 67 PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSG 126
+++ G+ ++ + +II+IDE+D I+ K + G
Sbjct: 65 FFFLINGPEIMS-KLAGESESNLRKAFEEAEKNA-----PAIIFIDELDAIAPKREKTHG 118
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 38.6 bits (88), Expect = 2e-04
Identities = 16/43 (37%), Positives = 22/43 (51%)
Query: 39 EKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY 81
EK NI LVGP G GK+ + + LA+ +N+ D G
Sbjct: 1 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGA 43
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 38.1 bits (87), Expect = 3e-04
Identities = 22/178 (12%), Positives = 42/178 (23%), Gaps = 13/178 (7%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
+ ++G GK+++V LA + N F GD+
Sbjct: 9 TVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQAMQYSDYPQMALGHQ 68
Query: 102 ELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAEKKNPSQN 161
+ ++ + +I I + I+ + L
Sbjct: 69 RYIDYAVRHSHKIAFIDTDFIT-------------TQAFCIQYEGKAHPFLDSMIKEYPF 115
Query: 162 PQVFNIDTTNILFIAGGAFSGIENFIINRINQETNFLEKLNNNYNLICETNTEDLINF 219
+ G G + L+K Y I + D N
Sbjct: 116 DVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQ 173
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 37.7 bits (86), Expect = 4e-04
Identities = 12/71 (16%), Positives = 22/71 (30%), Gaps = 3/71 (4%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY---VGDDVESIIQKLLHECDY 99
I+L G + GK+ +V+ L ++ P + S EA +
Sbjct: 6 IILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAMPLKMQSAEGGIEFDADGGVSIG 65
Query: 100 DVELAEQSIIY 110
A +
Sbjct: 66 PEFRALEGAWA 76
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 37.6 bits (86), Expect = 4e-04
Identities = 10/37 (27%), Positives = 17/37 (45%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA 79
+LL G G GK+ + + LA + VP + +
Sbjct: 7 LLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY 43
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 36.6 bits (83), Expect = 0.001
Identities = 25/123 (20%), Positives = 45/123 (36%), Gaps = 24/123 (19%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
+ Q ++ LKS N+ ++L GP G GKT + L K +
Sbjct: 14 VTAQDHAVTVLKK----------TLKSANL----PHMLFYGPPGTGKTSTILALTKELYG 59
Query: 67 P------IIVVDATSFTEAGYVGDDVESIIQ----KLLHECDYDVELAEQSIIYIDEIDK 116
P I+ ++A+ V + V++ + K + II +DE D
Sbjct: 60 PDLMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADS 119
Query: 117 ISK 119
++
Sbjct: 120 MTA 122
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter
jejuni [TaxId: 197]}
Length = 161
Score = 34.5 bits (78), Expect = 0.004
Identities = 10/31 (32%), Positives = 19/31 (61%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72
NI+ +G G GK+ + + LAK +++ + D
Sbjct: 2 NIVFIGFMGSGKSTLARALAKDLDLVFLDSD 32
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia
chrysanthemi [TaxId: 556]}
Length = 170
Score = 34.5 bits (78), Expect = 0.004
Identities = 9/30 (30%), Positives = 15/30 (50%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAKIINVPII 69
I +VG GCG T + + LA+ + +
Sbjct: 2 TEPIFMVGARGCGMTTVGRELARALGYEFV 31
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 34.6 bits (78), Expect = 0.004
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69
+LVG G GK+ + + LAK + V ++
Sbjct: 3 KAVLVGLPGSGKSTIGRRLAKALGVGLL 30
>d1t5la1 c.37.1.19 (A:2-414) Nucleotide excision repair enzyme UvrB
{Bacillus caldotenax [TaxId: 1395]}
Length = 413
Score = 35.1 bits (80), Expect = 0.005
Identities = 16/74 (21%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDY 99
+ L+G TG GKT + + +N P +V+ T AG + +++ E
Sbjct: 31 VKHQTLLGATGTGKTFTISNVIAQVNKPTLVIAHNK-TLAGQLYSELKEFFPHNAVEYFV 89
Query: 100 DVELAEQSIIYIDE 113
Q Y+ +
Sbjct: 90 SYYDYAQPEAYVPQ 103
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 34.4 bits (77), Expect = 0.007
Identities = 16/88 (18%), Positives = 32/88 (36%), Gaps = 3/88 (3%)
Query: 7 IIGQHETKKIVSVGV---YNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKI 63
+ G + + + N K F K+ +L GP G GKT +A+
Sbjct: 16 VCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQE 75
Query: 64 INVPIIVVDATSFTEAGYVGDDVESIIQ 91
+ I+ +A+ + V++ +
Sbjct: 76 LGYDILEQNASDVRSKTLLNAGVKNALD 103
>d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 189
Score = 33.5 bits (75), Expect = 0.010
Identities = 15/89 (16%), Positives = 32/89 (35%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
++ L GP G GKT ++ ++++ + VD E G + + L
Sbjct: 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLS 62
Query: 102 ELAEQSIIYIDEIDKISKKTDVVSGKDVS 130
+ + E D+ S + ++
Sbjct: 63 RVGLEPPPGKRECRVGQYVVDLTSFEQLA 91
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 33.9 bits (77), Expect = 0.010
Identities = 32/153 (20%), Positives = 47/153 (30%), Gaps = 42/153 (27%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIIN- 65
++GQ ++ L I L G G GKT + + LAK +N
Sbjct: 14 VVGQEHVLTALAN----------GLSLGRI---HHAYLFSGTRGVGKTSIARLLAKGLNC 60
Query: 66 ------VPIIVVDATSFTEAGYVGDDVE---------SIIQKLLHECDYDVELAEQSIIY 110
P V D E G D +E + LL Y +
Sbjct: 61 ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYL 120
Query: 111 IDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143
IDE+ +S+ +LLK +E
Sbjct: 121 IDEVHMLSR-------------HSFNALLKTLE 140
>d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK,
N-terminal domain {Archaeon Thermococcus litoralis
[TaxId: 2265]}
Length = 240
Score = 33.8 bits (77), Expect = 0.010
Identities = 21/130 (16%), Positives = 50/130 (38%), Gaps = 8/130 (6%)
Query: 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTE 78
V+ + + ++ ++ ++ + L+GP+GCGKT T ++I +
Sbjct: 8 DVWKVFGEVTAVREMSLEVKDGEFMILLGPSGCGKT----TTLRMIA-GLEEPSRGQIYI 62
Query: 79 AGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSL 138
+ D E + D D+ + QS + + + V + + Q +
Sbjct: 63 GDKLVADPEK--GIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 139 LKLIEGVNLS 148
++ E + L+
Sbjct: 121 REVAELLGLT 130
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 33.0 bits (74), Expect = 0.014
Identities = 13/67 (19%), Positives = 22/67 (32%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
+LL+GP G GK LA+ + +P I + L
Sbjct: 2 RVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKRYLDAGDLVPS 61
Query: 102 ELAEQSI 108
+L + +
Sbjct: 62 DLTNELV 68
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 32.7 bits (73), Expect = 0.014
Identities = 5/23 (21%), Positives = 9/23 (39%)
Query: 35 NIYLEKSNILLVGPTGCGKTLMV 57
++ + +L G GKT
Sbjct: 2 HMLKKGMTTVLDFHPGAGKTRRF 24
>d1c4oa1 c.37.1.19 (A:2-409) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 408
Score = 33.3 bits (75), Expect = 0.019
Identities = 10/51 (19%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESII 90
+ + L+G TG GKT+ + + + + P +V+ A + + +
Sbjct: 28 ERFVTLLGATGTGKTVTMAKVIEALGRPALVLAPNK-ILAAQLAAEFRELF 77
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 32.6 bits (73), Expect = 0.020
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVE 87
NILL G G GKT + K LA + I V + E Y G D E
Sbjct: 6 NILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEE 51
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 32.6 bits (73), Expect = 0.023
Identities = 11/78 (14%), Positives = 28/78 (35%), Gaps = 3/78 (3%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDA---TSFTEAGYVGDDVESIIQKLLHECD 98
++L+GP G GK L + + + + + +G + + I+ + D
Sbjct: 4 RMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSD 63
Query: 99 YDVELAEQSIIYIDEIDK 116
+ + + + K
Sbjct: 64 DIMVNMIKDELTNNPACK 81
>d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein
TrwB {Escherichia coli [TaxId: 562]}
Length = 433
Score = 33.0 bits (74), Expect = 0.025
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Query: 37 YLEKSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVD 72
E ++L+ G TG GK+++++ LA +++VD
Sbjct: 47 DAEPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85
>d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 232
Score = 32.6 bits (74), Expect = 0.025
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
Query: 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
V + + + K N+ + + + VGP+GCGK+ TL ++I
Sbjct: 5 NVTKAWGEVVVSKDINLDIHEGEFVVFVGPSGCGKS----TLLRMIA 47
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 32.5 bits (72), Expect = 0.029
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 41 SNILLVGPTGCGKTLMVKTLAKIIN 65
L+G G GKT+ ++ L ++
Sbjct: 44 PRATLLGRPGTGKTVTLRKLWELYK 68
>d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 136
Score = 31.8 bits (71), Expect = 0.030
Identities = 13/102 (12%), Positives = 19/102 (18%), Gaps = 21/102 (20%)
Query: 43 ILLVGPTGCGKTLMV---------------------KTLAKIINVPIIVVDATSFTEAGY 81
L PTG GK+ V ++ V
Sbjct: 11 AHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGVDPNIRTGVRTI 70
Query: 82 VGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISKKTDV 123
+ D II DE + +
Sbjct: 71 TTGSPITYSTYGKFLADGGCSGGAYDIIICDECHSTDATSIL 112
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 31.9 bits (71), Expect = 0.031
Identities = 13/112 (11%), Positives = 33/112 (29%), Gaps = 7/112 (6%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
I++ G G GKT +VK + + + + D E+ + + +
Sbjct: 3 IIITGEPGVGKTTLVKKIVERL-------GKRAIGFWTEEVRDPETKKRTGFRIITTEGK 55
Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154
S + + V + + + + + + + E
Sbjct: 56 KKIFSSKFFTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDE 107
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId:
271]}
Length = 207
Score = 32.0 bits (72), Expect = 0.034
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 9/38 (23%)
Query: 26 KRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKI 63
RL +LK +N+ LVG G GKT T AK+
Sbjct: 2 ARLPVLKDRNL------WFLVGLQGSGKTT---TAAKL 30
>d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022,
N-terminal domain {Pyrococcus horikoshii [TaxId:
53953]}
Length = 239
Score = 32.1 bits (73), Expect = 0.036
Identities = 12/47 (25%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
+ + + N+ ++ L L+GP+GCGKT T ++I
Sbjct: 11 NLTKRFGNFTAVNKLNLTIKDGEFLVLLGPSGCGKT----TTLRMIA 53
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 32.2 bits (72), Expect = 0.043
Identities = 6/24 (25%), Positives = 11/24 (45%)
Query: 34 KNIYLEKSNILLVGPTGCGKTLMV 57
+I+ +K ++ G GKT
Sbjct: 3 DDIFRKKRLTIMDLHPGAGKTKRY 26
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 32.0 bits (71), Expect = 0.045
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIIN 65
+G G GKT + K K ++
Sbjct: 49 YGSIGRVGIGKTTLAKFTVKRVS 71
>d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+
modules {Escherichia coli [TaxId: 562]}
Length = 268
Score = 31.9 bits (72), Expect = 0.046
Identities = 26/82 (31%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSFT---EAGYVGDDVESIIQKL 93
K+N LLVG +G GKT + + LA I +VP ++ D T ++ + G +K
Sbjct: 39 KNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKR 98
Query: 94 LHECDYDVELAEQSIIYIDEID 115
+E SI++IDEI
Sbjct: 99 FKALLKQLEQDTNSILFIDEIH 120
>d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter,
ATP-binding protein {Methanosarcina acetivorans [TaxId:
2214]}
Length = 229
Score = 31.6 bits (71), Expect = 0.050
Identities = 11/38 (28%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Query: 29 FLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
F L + ++ +E ++GPTG GKT ++I
Sbjct: 14 FSLDNLSLKVESGEYFVILGPTGAGKT----LFLELIA 47
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania
major [TaxId: 5664]}
Length = 174
Score = 31.1 bits (69), Expect = 0.059
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72
NIL+ G G GKT M + +A ++ +
Sbjct: 7 NILITGTPGTGKTSMAEMIAAELDGFQHLEV 37
>d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54
(NtrC1), C-terminal domain {Aquifex aeolicus [TaxId:
63363]}
Length = 247
Score = 31.4 bits (71), Expect = 0.063
Identities = 24/114 (21%), Positives = 44/114 (38%), Gaps = 27/114 (23%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAK----------IINVPIIVVDATSFTEAGYVGDDVESI 89
+ +L+ G +G GK ++ + + K +NV I D GY
Sbjct: 23 ECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGA 82
Query: 90 IQKLLHECDYDVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLIE 143
+ + ELA+ +++DEI ++S + Q LL++IE
Sbjct: 83 VSSK----EGFFELADGGTLFLDEIGELSLEA-------------QAKLLRVIE 119
>d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV,
N-terminal domain {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 242
Score = 31.2 bits (70), Expect = 0.065
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
Query: 31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
L + NI +E ++GP+G GKT T +II
Sbjct: 21 LDNVNINIENGERFGILGPSGAGKT----TFMRIIA 52
>d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 254
Score = 31.5 bits (71), Expect = 0.065
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 6/55 (10%)
Query: 13 TKKIVSV-GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
T +I+ + ++ L +I + K ++ ++GP G GK+ TL +I
Sbjct: 1 TMEILRTENIVKYFGEFKALDGVSISVNKGDVTLIIGPNGSGKS----TLINVIT 51
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 31.0 bits (69), Expect = 0.071
Identities = 10/62 (16%), Positives = 20/62 (32%), Gaps = 3/62 (4%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGY---VGDDVESIIQKLLHECD 98
N++L+G G GK + + +P I +G + + + D
Sbjct: 2 NLVLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPD 61
Query: 99 YD 100
Sbjct: 62 EV 63
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 31.0 bits (69), Expect = 0.075
Identities = 7/87 (8%), Positives = 23/87 (26%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDV 101
+++ G GK + + + I E ++ + + +
Sbjct: 5 KVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRAKEFMEKGQLVPD 64
Query: 102 ELAEQSIIYIDEIDKISKKTDVVSGKD 128
E+ + + ++ G
Sbjct: 65 EIVVNMVKERLRQPDAQENGWLLDGYP 91
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 30.7 bits (68), Expect = 0.082
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69
+L+GP G GK LAK V +
Sbjct: 5 RAVLLGPPGAGKGTQAPKLAKNFCVCHL 32
>d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import
ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 240
Score = 31.1 bits (70), Expect = 0.084
Identities = 8/31 (25%), Positives = 16/31 (51%), Gaps = 4/31 (12%)
Query: 35 NIYLEKSNILLVGPTGCGKTLMVKTLAKIIN 65
+ + + +L+GPTG GK+ ++I
Sbjct: 19 DFEMGRDYCVLLGPTGAGKS----VFLELIA 45
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 30.8 bits (68), Expect = 0.10
Identities = 22/113 (19%), Positives = 39/113 (34%), Gaps = 14/113 (12%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
I+G ET + + K N+ ++++ G G GKT V LA +
Sbjct: 17 IVGNKETIDRLQQ----------IAKDGNM----PHMIISGMPGIGKTTSVHCLAHELLG 62
Query: 67 PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEIDKISK 119
+ G DV K + + + I+ +DE D ++
Sbjct: 63 RSYADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA 115
>d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine
permease {Salmonella typhimurium [TaxId: 90371]}
Length = 258
Score = 30.6 bits (69), Expect = 0.11
Identities = 11/52 (21%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 15 KIVSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
K+ + ++ Y +LK ++ +++ ++G +G GK+ T + IN
Sbjct: 2 KLHVIDLHKRYGGHEVLKGVSLQARAGDVISIIGSSGSGKS----TFLRCIN 49
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 30.4 bits (67), Expect = 0.11
Identities = 6/27 (22%), Positives = 15/27 (55%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPII 69
+L+G +G GK+ + +A ++ +
Sbjct: 9 YVLMGVSGSGKSAVASEVAHQLHAAFL 35
>d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 182
Score = 30.3 bits (67), Expect = 0.12
Identities = 13/57 (22%), Positives = 22/57 (38%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDY 99
++L GP+ GK+ +V+ L + I V AT+ D V+
Sbjct: 5 VVLSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQL 61
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 30.4 bits (67), Expect = 0.12
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAKIINVPIIV 70
K ++ GP G GK+ K LA ++ +
Sbjct: 2 KKLYIITGPAGVGKSTTCKRLAAQLDNSAYI 32
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 30.2 bits (67), Expect = 0.13
Identities = 5/28 (17%), Positives = 11/28 (39%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69
++G G GK + + K + +
Sbjct: 8 RAAIMGAPGSGKGTVSSRITKHFELKHL 35
>d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 30.3 bits (68), Expect = 0.13
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
Query: 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
+ + +LK + +E+ I L+GP G GKT T +II+
Sbjct: 7 DLRKRIGKKEILKGISFEIEEGEIFGLIGPNGAGKT----TTLRIIS 49
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase
{Escherichia coli [TaxId: 562]}
Length = 179
Score = 30.3 bits (67), Expect = 0.14
Identities = 7/31 (22%), Positives = 13/31 (41%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72
I+L+G GK + + + +P I
Sbjct: 2 RIILLGAPVAGKGTQAQFIMEKYGIPQISTG 32
>d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
globisporus [TaxId: 1459]}
Length = 182
Score = 29.9 bits (66), Expect = 0.15
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69
NI+L+G G GK + + P I
Sbjct: 2 NIVLMGLPGAGKGTQADRIVEKYGTPHI 29
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 29.8 bits (66), Expect = 0.15
Identities = 5/27 (18%), Positives = 11/27 (40%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPII 69
++ VG G GK+ ++ +
Sbjct: 17 VVAVGFPGAGKSTFIQEHLVSAGYVHV 43
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 30.1 bits (66), Expect = 0.15
Identities = 10/19 (52%), Positives = 15/19 (78%)
Query: 38 LEKSNILLVGPTGCGKTLM 56
+++N L+V PTG GKTL+
Sbjct: 21 CKETNCLIVLPTGLGKTLI 39
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 30.1 bits (66), Expect = 0.16
Identities = 4/20 (20%), Positives = 10/20 (50%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+L+ G G ++ L++
Sbjct: 27 LLIQALPGMGDDALIYALSR 46
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 30.1 bits (67), Expect = 0.16
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
Query: 43 ILLVGPTGCGKTLMVKTLAKI 63
+L+VG G GKT T+AK+
Sbjct: 9 VLVVGVNGVGKT---TTIAKL 26
>d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter
{Thermotoga maritima, TM1139 [TaxId: 2336]}
Length = 240
Score = 30.3 bits (68), Expect = 0.16
Identities = 11/47 (23%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
Query: 20 GVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
++ +Y + +K ++ + + I+ L+G G GKT T I
Sbjct: 11 SLHVYYGAIHAIKGIDLKVPRGQIVTLIGANGAGKT----TTLSAIA 53
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 29.7 bits (65), Expect = 0.18
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 4/50 (8%)
Query: 26 KRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATS 75
K + +K+ + + + G + GKT + L++ + I V
Sbjct: 12 KTILAIKTAGRLV----LGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57
>d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance
regulator, CFTR, nucleotide-binding domain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 29.9 bits (67), Expect = 0.19
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIIN 65
+ + G TG GKT +L +I
Sbjct: 65 LAITGSTGSGKT----SLLMLIL 83
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 29.3 bits (64), Expect = 0.19
Identities = 6/20 (30%), Positives = 9/20 (45%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
IL +G G GK+ +
Sbjct: 5 ILTIGCPGSGKSTWAREFIA 24
>d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA,
C-terminal domain {Lactococcus lactis [TaxId: 1358]}
Length = 242
Score = 29.8 bits (67), Expect = 0.20
Identities = 7/23 (30%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIIN 65
I GP+G GK+ T+ ++
Sbjct: 31 IAFAGPSGGGKS----TIFSLLE 49
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 194
Score = 29.6 bits (65), Expect = 0.22
Identities = 4/28 (14%), Positives = 10/28 (35%)
Query: 42 NILLVGPTGCGKTLMVKTLAKIINVPII 69
+ ++G G GK + + +
Sbjct: 3 VVFVLGGPGAGKGTQCARIVEKYGYTHL 30
>d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 251
Score = 29.9 bits (67), Expect = 0.23
Identities = 11/51 (21%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 22 YNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIINVPIIVV 71
Y + + +L+ L + LVGP G GK+ + L + +
Sbjct: 21 YPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 29.4 bits (64), Expect = 0.32
Identities = 12/109 (11%), Positives = 28/109 (25%), Gaps = 13/109 (11%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
+ E + + + +++ ++LL GP G GK L + I
Sbjct: 13 LSHNEELTNFL---------KSLSDQPRDL----PHLLLYGPNGTGKKTRCMALLESIFG 59
Query: 67 PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID 115
P + + + + + I +
Sbjct: 60 PGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQE 108
>d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence
recognition protein Ffh {Archaeon Acidianus ambivalens
[TaxId: 2283]}
Length = 211
Score = 29.0 bits (64), Expect = 0.33
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 43 ILLVGPTGCGKTLMVKTLAKII 64
I+LVG G GK LA
Sbjct: 15 IMLVGVQGTGKATTAGKLAYFY 36
>d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal
recognition particle receptor FtsY {Thermotoga maritima
[TaxId: 2336]}
Length = 213
Score = 28.9 bits (64), Expect = 0.34
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 43 ILLVGPTGCGKTLMVKTLAKI 63
I++VG G GKT + K+
Sbjct: 14 IMVVGVNGTGKTT---SCGKL 31
>d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal
recognition particle receptor FtsY {Escherichia coli
[TaxId: 562]}
Length = 211
Score = 29.3 bits (65), Expect = 0.34
Identities = 10/21 (47%), Positives = 13/21 (61%), Gaps = 3/21 (14%)
Query: 43 ILLVGPTGCGKTLMVKTLAKI 63
IL+VG G GKT T+ K+
Sbjct: 12 ILMVGVNGVGKT---TTIGKL 29
>g1f2t.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 292
Score = 29.3 bits (64), Expect = 0.36
Identities = 6/38 (15%), Positives = 15/38 (39%)
Query: 24 HYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
K + ++ L++G G GK+ ++ +
Sbjct: 7 TVKNFRSHSDTVVEFKEGINLIIGQNGSGKSSLLDAIL 44
>d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein
{Escherichia coli [TaxId: 562]}
Length = 241
Score = 29.1 bits (65), Expect = 0.37
Identities = 11/36 (30%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
L + N+ +++ ++ +VG +G GK+ TL K+I
Sbjct: 19 LDNINLSIKQGEVIGIVGRSGSGKS----TLTKLIQ 50
>d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12
uptake, BtuD {Escherichia coli [TaxId: 562]}
Length = 231
Score = 29.1 bits (65), Expect = 0.38
Identities = 9/21 (42%), Positives = 11/21 (52%), Gaps = 4/21 (19%)
Query: 45 LVGPTGCGKTLMVKTLAKIIN 65
LVGP G GK+ TL +
Sbjct: 30 LVGPNGAGKS----TLLARMA 46
>d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895
{Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 28.7 bits (64), Expect = 0.38
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 31 LKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
L+ + +EK N++ GP G GKT TL K I+
Sbjct: 17 LERITMTIEKGNVVNFHGPNGIGKT----TLLKTIS 48
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 28.8 bits (63), Expect = 0.38
Identities = 4/30 (13%), Positives = 10/30 (33%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72
+ ++G G GK + + +
Sbjct: 9 VFVLGGPGSGKGTQCANIVRDFGWVHLSAG 38
>d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC
transporter MsbA, C-terminal domain {Salmonella
typhimurium [TaxId: 90371]}
Length = 253
Score = 29.0 bits (65), Expect = 0.43
Identities = 9/23 (39%), Positives = 14/23 (60%), Gaps = 4/23 (17%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIIN 65
+ LVG +G GK+ T+A +I
Sbjct: 44 VALVGRSGSGKS----TIASLIT 62
>d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export
ATP-binding/permease protein SAV1866 {Staphylococcus
aureus [TaxId: 1280]}
Length = 255
Score = 29.0 bits (65), Expect = 0.45
Identities = 8/23 (34%), Positives = 12/23 (52%), Gaps = 4/23 (17%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIIN 65
+ VG +G GK+ TL +I
Sbjct: 47 VAFVGMSGGGKS----TLINLIP 65
>d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human
(Homo sapiens) [TaxId: 9606]}
Length = 178
Score = 28.7 bits (63), Expect = 0.46
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++L+G G G+ + TL
Sbjct: 6 LVLLGAHGVGRRHIKNTLIT 25
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 28.8 bits (63), Expect = 0.47
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 17/109 (15%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
I+GQ K + +K+ ++ ++L GP G GKT LA+ +
Sbjct: 26 IVGQEHIVKRLKH----------YVKTGSM----PHLLFAGPPGVGKTTAALALARELFG 71
Query: 67 PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEID 115
+ + G + +I++ + E + S I +
Sbjct: 72 ENWRHNFLELNASDERGIN---VIREKVKEFARTKPIGGASFKIIFLDE 117
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 28.4 bits (62), Expect = 0.59
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++L GP+G GK+ ++K L +
Sbjct: 3 VVLSGPSGAGKSTLLKKLFQ 22
>d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId:
9823]}
Length = 194
Score = 28.4 bits (62), Expect = 0.60
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 11/72 (15%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
I +VG G GK + + + + GD + + + E
Sbjct: 11 IFVVGGPGSGKGTQCEKIVQKYGYTHL-----------STGDLLRAEVSSGSARGKMLSE 59
Query: 103 LAEQSIIYIDEI 114
+ E+ + E
Sbjct: 60 IMEKGQLVPLET 71
>d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter
sphaeroides [TaxId: 1063]}
Length = 288
Score = 28.4 bits (63), Expect = 0.72
Identities = 8/37 (21%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 43 ILLVGPTGCGKTLMVKTLAKII---NVPIIVVDATSF 76
I + G +G G + + T +I V + ++ +F
Sbjct: 7 ISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAF 43
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.0 bits (61), Expect = 0.76
Identities = 7/27 (25%), Positives = 12/27 (44%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPII 69
I ++G G GK + L K + +
Sbjct: 11 IFVLGGPGAGKGTQCEKLVKDYSFVHL 37
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 27.6 bits (60), Expect = 0.91
Identities = 9/58 (15%), Positives = 19/58 (32%), Gaps = 6/58 (10%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYD 100
+++ G G G T + + + SF G + + ++ D D
Sbjct: 4 VVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSF------GSVMFEVAKEENLVSDRD 55
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 27.9 bits (61), Expect = 0.95
Identities = 12/75 (16%), Positives = 20/75 (26%), Gaps = 2/75 (2%)
Query: 38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
L K + PTG GKT ++ + + T + I+K +
Sbjct: 56 LRKESFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSL--LVIQAAETIRKYAEKA 113
Query: 98 DYDVELAEQSIIYID 112
E
Sbjct: 114 GVGTENLIGYYHGRI 128
>d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId:
562]}
Length = 195
Score = 27.6 bits (61), Expect = 1.0
Identities = 23/87 (26%), Positives = 41/87 (47%), Gaps = 15/87 (17%)
Query: 39 EKSNILLVGPTGCGKTLMVKTLAKII---NVP-------IIVVDATSFT-EAGYVGDDVE 87
K+N +L+G G GKT +V+ LA+ I VP ++ +D + A Y G+
Sbjct: 42 TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGE--- 98
Query: 88 SIIQKLLHECDYDVELAEQSIIYIDEI 114
++L + + I++IDE+
Sbjct: 99 -FEERLKGVLNDLAKQEGNVILFIDEL 124
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 27.6 bits (60), Expect = 1.1
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
I++ GP+G GK+ ++K L
Sbjct: 4 IVISGPSGTGKSTLLKKLFA 23
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 27.4 bits (59), Expect = 1.1
Identities = 21/108 (19%), Positives = 33/108 (30%), Gaps = 15/108 (13%)
Query: 7 IIGQHETKKIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
+ GQ+E V + + ++L GP G GKT + LA+ I
Sbjct: 16 VYGQNEVITTVRK----------FVDEGKL----PHLLFYGPPGTGKTSTIVALAREIYG 61
Query: 67 PIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVELAEQSIIYIDEI 114
+ G DV K + +I +DE
Sbjct: 62 KNYSNMVLELNASDDRGIDVVRNQIK-DFASTRQIFSKGFKLIILDEA 108
>g1ii8.1 c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 369
Score = 27.5 bits (59), Expect = 1.3
Identities = 5/24 (20%), Positives = 11/24 (45%)
Query: 31 LKSKNIYLEKSNILLVGPTGCGKT 54
+ ++ L++G G GK+
Sbjct: 14 HSDTVVEFKEGINLIIGQNGSGKS 37
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.2 bits (59), Expect = 1.5
Identities = 5/35 (14%), Positives = 13/35 (37%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT 77
I + G T GK+ + + +++ +
Sbjct: 5 IGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVV 39
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 27.0 bits (58), Expect = 1.5
Identities = 7/23 (30%), Positives = 10/23 (43%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIIN 65
I L G GK + + L +N
Sbjct: 9 IFLTGYMNSGKDAIARALQVTLN 31
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 27.3 bits (59), Expect = 1.6
Identities = 11/82 (13%), Positives = 30/82 (36%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
++ VG G GKT + + + V T + + +++ + + E
Sbjct: 3 VVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDTGVKELPYEPSIDVREFVTVEEIMRE 62
Query: 103 LAEQSIIYIDEIDKISKKTDVV 124
+ ++ D++ +K +
Sbjct: 63 GYGPNGAIVESYDRLMEKFNEY 84
>d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 286
Score = 27.1 bits (59), Expect = 1.7
Identities = 13/59 (22%), Positives = 17/59 (28%), Gaps = 11/59 (18%)
Query: 29 FLLKSKNIYLEKSN-----ILLVGPTGCGKTLMVKTLAKII------NVPIIVVDATSF 76
FL K + E N I GP G GK+ + + I F
Sbjct: 11 FLDKYIPEWFETGNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDF 69
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 26.9 bits (58), Expect = 1.7
Identities = 8/45 (17%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 25 YKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPII 69
+ R++ L + + +++VG GKT ++ + V
Sbjct: 4 FTRIWRLFNHQEH----KVIIVGLDNAGKTTILYQFSMNEVVHTS 44
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 26.9 bits (58), Expect = 1.7
Identities = 7/80 (8%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSF--TEAGYVGDDVESIIQKLLHECDYD 100
++ G G GK+ ++ + +I++ I ++ + + + + +
Sbjct: 4 GIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRKLSVE 63
Query: 101 VELAEQSIIYIDEIDKISKK 120
+ Q ++
Sbjct: 64 KQKKLQIDAAKGIAEEARAG 83
>d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId:
562]}
Length = 205
Score = 26.7 bits (58), Expect = 1.8
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++ P+G GK+ +++ L K
Sbjct: 5 YIVSAPSGAGKSSLIQALLK 24
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 26.5 bits (57), Expect = 2.0
Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 20 GVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAK 62
G+ + ++L + + ILL+G GKT ++K LA
Sbjct: 1 GLLSILRKLKSAPDQEV-----RILLLGLDNAGKTTLLKQLAS 38
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 26.6 bits (58), Expect = 2.1
Identities = 10/35 (28%), Positives = 17/35 (48%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFT 77
+LL+G GK+ +VK + + V + T F
Sbjct: 9 LLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQ 43
>d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type
1, different strains [TaxId: 10298]}
Length = 329
Score = 26.9 bits (59), Expect = 2.2
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 7/36 (19%)
Query: 36 IYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVV 71
+Y++ GP G GKT + L + + IV
Sbjct: 7 VYID-------GPHGMGKTTTTQLLVALGSRDDIVY 35
>d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli
[TaxId: 562]}
Length = 222
Score = 26.5 bits (57), Expect = 2.6
Identities = 20/129 (15%), Positives = 46/129 (35%), Gaps = 9/129 (6%)
Query: 15 KIVSVGVYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT 74
K S+ + N ++ L++ L G G GK+ + + + ++
Sbjct: 3 KFRSLTLINWN----GFFARTFDLDELVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFR 58
Query: 75 SFTEAGYVGDDVESIIQKLLHECDYDVELA-----EQSIIYIDEIDKISKKTDVVSGKDV 129
+ TEAG + + L L Q ++ + +++ + V K
Sbjct: 59 NTTEAGATSGSRDKGLHGKLKAGVCYSMLDTINSRHQRVVVGVRLQQVAGRDRKVDIKPF 118
Query: 130 SGEGVQQSL 138
+ +G+ S+
Sbjct: 119 AIQGLPMSV 127
>d1a3ca_ c.61.1.1 (A:) Pyrimidine operon regulator PyrR {Bacillus
subtilis [TaxId: 1423]}
Length = 178
Score = 26.2 bits (57), Expect = 2.6
Identities = 17/81 (20%), Positives = 32/81 (39%), Gaps = 4/81 (4%)
Query: 37 YLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESII---QKL 93
+N +LVG G L + LA+ I + DD+ + L
Sbjct: 26 NKGMNNCILVGIKTRGIYLAKR-LAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPL 84
Query: 94 LHECDYDVELAEQSIIYIDEI 114
+ D V++ +Q +I +D++
Sbjct: 85 VKGADIPVDITDQKVILVDDV 105
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 26.5 bits (57), Expect = 2.6
Identities = 15/92 (16%), Positives = 29/92 (31%), Gaps = 7/92 (7%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
I++VG GKT + K L + +N I V F + K ++ +
Sbjct: 5 IVMVGLPARGKTYISKKLTRYLN--FIGVPTREFN-----VGQYRRDMVKTYKSFEFFLP 57
Query: 103 LAEQSIIYIDEIDKISKKTDVVSGKDVSGEGV 134
E+ + + + + G
Sbjct: 58 DNEEGLKIRKQCALAALNDVRKFLSEEGGHVA 89
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase
(APS kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 26.2 bits (56), Expect = 2.7
Identities = 8/30 (26%), Positives = 13/30 (43%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVD 72
+ L G +G GKT + L + + I
Sbjct: 22 VWLTGLSGAGKTTVSMALEEYLVCHGIPCY 51
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.5 bits (57), Expect = 2.7
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 3/34 (8%)
Query: 42 NILLVGPTGCGKTLMVKTLAK---IINVPIIVVD 72
+L VG GKTL+ L I
Sbjct: 2 AVLFVGLCDSGKTLLFVRLLTGQYRDTQTSITDS 35
>d1mgta2 c.55.7.1 (A:1-88) O6-alkylguanine-DNA alkyltransferase
{Archaeon Pyrococcus kodakaraensis [TaxId: 311400]}
Length = 88
Score = 25.2 bits (55), Expect = 2.8
Identities = 8/33 (24%), Positives = 15/33 (45%)
Query: 175 IAGGAFSGIENFIINRINQETNFLEKLNNNYNL 207
+ G AF+ ++ RI+ L K + +L
Sbjct: 24 VQGIAFAFDRGTLMKRIHDLAEHLGKRGVSISL 56
>d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA
{Escherichia coli [TaxId: 562]}
Length = 274
Score = 26.5 bits (57), Expect = 2.8
Identities = 8/25 (32%), Positives = 13/25 (52%)
Query: 37 YLEKSNILLVGPTGCGKTLMVKTLA 61
+ + LV P G GK+++ LA
Sbjct: 26 MVAGTVGALVSPGGAGKSMLALQLA 50
>g1xew.1 c.37.1.12 (X:,Y:) Smc head domain {Pyrococcus furiosus
[TaxId: 2261]}
Length = 329
Score = 26.5 bits (57), Expect = 3.1
Identities = 8/35 (22%), Positives = 14/35 (40%)
Query: 27 RLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLA 61
+ + K I K +VG G GK+ + +
Sbjct: 13 KSYGNKKVVIPFSKGFTAIVGANGSGKSNIGDAIL 47
>d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 230
Score = 26.0 bits (57), Expect = 3.3
Identities = 12/50 (24%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 17 VSVGVYNHYKRLFLLKSKNIYLEKSNIL-LVGPTGCGKTLMVKTLAKIIN 65
V+ + ++ LK+ N+ +++ + ++GP+G GK+ T+ II
Sbjct: 7 VTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKS----TMLNIIG 52
>d2axpa1 c.37.1.1 (A:2-165) Hypothetical protein YorR {Bacillus
subtilis [TaxId: 1423]}
Length = 164
Score = 25.8 bits (56), Expect = 3.3
Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 20/99 (20%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAG---------YVGDDVESIIQKL 93
I+L GP C K+ + L+K + PII + ++G + D+ II +
Sbjct: 3 IILEGPDCCFKSTVAAKLSKELKYPIIKGSSFELAKSGNEKLFEHFNKLADEDNVIIDRF 62
Query: 94 LHEC--------DYDVELAEQSIIYIDEIDKISKKTDVV 124
++ DY + L E+ + +I+ DKI K VV
Sbjct: 63 VYSNLVYAKKFKDYSI-LTERQLRFIE--DKIKAKAKVV 98
>d2h62a1 g.17.1.2 (A:12-114) Bone morphogenetic protein-2 (BMP-2)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 25.2 bits (55), Expect = 3.5
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 8/42 (19%)
Query: 88 SIIQKLLHE--------CDYDVELAEQSIIYIDEIDKISKKT 121
+I+Q L++ C EL+ S++Y+DE +K+ K
Sbjct: 50 AIVQTLVNSVNSKIPKACCVPTELSAISMLYLDENEKVVLKN 91
>d1k8ka1 c.55.1.1 (A:3-160) Actin-related protein 3, Arp3 {Cow
(Bos taurus) [TaxId: 9913]}
Length = 158
Score = 25.8 bits (56), Expect = 3.7
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 1/26 (3%)
Query: 66 VPIIVVDA-TSFTEAGYVGDDVESII 90
+P VVD T +T+ GY G+ I
Sbjct: 3 LPACVVDCGTGYTKLGYAGNTEPQFI 28
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 25.8 bits (55), Expect = 3.8
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+++VG G GK+ + +
Sbjct: 9 LVVVGGGGVGKSALTIQFIQ 28
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 25.8 bits (56), Expect = 3.8
Identities = 8/46 (17%), Positives = 19/46 (41%)
Query: 21 VYNHYKRLFLLKSKNIYLEKSNILLVGPTGCGKTLMVKTLAKIINV 66
V K ++ YL+ + G +G GK+ ++ + + +
Sbjct: 76 VKTSAKTGMGIEELKEYLKGKISTMAGLSGVGKSSLLNAINPGLKL 121
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 25.8 bits (55), Expect = 3.9
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 39 EKSNILLVGPTGCGKTLMVKTLAK 62
EK +++VG G GK+ + +
Sbjct: 4 EKYRLVVVGGGGVGKSALTIQFIQ 27
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 26.1 bits (57), Expect = 4.0
Identities = 8/39 (20%), Positives = 12/39 (30%), Gaps = 7/39 (17%)
Query: 36 IYLEKSNILLVGPTGCGKTLMVKTLAKIINVPIIVVDAT 74
IYL+ G G GKT + + +
Sbjct: 8 IYLD-------GAYGIGKTTAAEEFLHHFAITPNRILLI 39
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 25.8 bits (55), Expect = 4.1
Identities = 8/37 (21%), Positives = 14/37 (37%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEA 79
+L+ G G GKT + K N ++ +
Sbjct: 12 VLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRN 48
>d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4
[TaxId: 10331]}
Length = 333
Score = 26.1 bits (57), Expect = 4.1
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 36 IYLEKSNILLVGPTGCGKTLMVKTLAKIIN 65
IYL+ G G GK+ + +A +
Sbjct: 9 IYLD-------GVYGIGKSTTGRVMASAAS 31
>d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.7 bits (55), Expect = 4.4
Identities = 11/21 (52%), Positives = 12/21 (57%)
Query: 41 SNILLVGPTGCGKTLMVKTLA 61
S IL G TG GKTL+V
Sbjct: 27 SIILATGATGTGKTLLVSRFV 47
>d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein
MetN {Escherichia coli [TaxId: 562]}
Length = 240
Score = 25.6 bits (56), Expect = 4.9
Identities = 7/21 (33%), Positives = 13/21 (61%), Gaps = 4/21 (19%)
Query: 45 LVGPTGCGKTLMVKTLAKIIN 65
++G +G GK+ TL + +N
Sbjct: 36 VIGASGAGKS----TLIRCVN 52
>d2ixoa1 a.268.1.1 (A:2-317) Serine/threonine-protein phosphatase 2A
regulatory subunit B', PTPA {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 316
Score = 25.6 bits (56), Expect = 4.9
Identities = 8/73 (10%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 100 DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQ-------QSLLKLIEGVNLSITSL 152
+ S+ + K T ++S L+ +++ + L
Sbjct: 24 TTLDFQSSLAIHRIKYHLHKYTTLISHCSDPDPHATASSIAMVNGLMGVLD----KLAHL 79
Query: 153 AEKKNPSQNPQVF 165
++ P P+ +
Sbjct: 80 IDETPPLPGPRRY 92
>d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima
[TaxId: 2336]}
Length = 308
Score = 25.8 bits (55), Expect = 5.0
Identities = 7/26 (26%), Positives = 12/26 (46%)
Query: 36 IYLEKSNILLVGPTGCGKTLMVKTLA 61
I +VGP G GK+ ++ +
Sbjct: 20 IGFSDRVTAIVGPNGSGKSNIIDAIK 45
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 25.4 bits (55), Expect = 5.5
Identities = 12/87 (13%), Positives = 33/87 (37%), Gaps = 13/87 (14%)
Query: 39 EKSNILLVGPTGCGKTLMVKTLAKIINVP------IIVVDATSFTEAGYVGDDVESIIQK 92
E +IL+ G + L + + ++ +D +G D I+
Sbjct: 14 EGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGEN----IGIDD---IRT 66
Query: 93 LLHECDYDVELAEQSIIYIDEIDKISK 119
+ +Y EL + + + + +++++
Sbjct: 67 IKDFLNYSPELYTRKYVIVHDCERMTQ 93
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top
tamarin (Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 25.3 bits (54), Expect = 5.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+++VG G GK+ +
Sbjct: 7 VIMVGSGGVGKSALTLQFMY 26
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 25.0 bits (53), Expect = 5.6
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+L++G GKT ++K
Sbjct: 5 LLMLGLDNAGKTTILKKFNG 24
>d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain
{Human papillomavirus type 18 [TaxId: 333761]}
Length = 205
Score = 25.2 bits (55), Expect = 5.9
Identities = 6/27 (22%), Positives = 12/27 (44%)
Query: 39 EKSNILLVGPTGCGKTLMVKTLAKIIN 65
+K+ ++ GP GK+ + I
Sbjct: 52 KKNCLVFCGPANTGKSYFGMSFIHFIQ 78
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 25.4 bits (54), Expect = 5.9
Identities = 15/187 (8%), Positives = 41/187 (21%), Gaps = 14/187 (7%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDYDVE 102
I + G G GK +V+ L+ V +F G + D
Sbjct: 3 IAIEGVDGAGKRTLVEKLSGAFRAAGRSVATLAFPRYGQSVAADIAAEALHGEHGDLASS 62
Query: 103 LAEQSIIYID--------EIDKISKKTDVVSGKDVSGEGVQQSLLKLIEGVNLSITSLAE 154
+ + ++ V+ + V+ + + +
Sbjct: 63 VYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENAAGKAAAWVQR 122
Query: 155 ----KKNPSQNPQVFNIDTTNILFIAGGAFSG--IENFIINRINQETNFLEKLNNNYNLI 208
+ + + + L + ++ ++ Y +
Sbjct: 123 IEFARLGLPKPDWQVLLAVSAELAGERSRGRAQRDPGRARDNYERDAELQQRTGAVYAEL 182
Query: 209 CETNTED 215
Sbjct: 183 AAQGWGG 189
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 25.3 bits (54), Expect = 6.2
Identities = 6/20 (30%), Positives = 11/20 (55%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++VG GKT ++ + A
Sbjct: 12 CVVVGDGAVGKTCLLMSYAN 31
>d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain
{Human (Homo sapiens) [TaxId: 9606]}
Length = 242
Score = 25.5 bits (54), Expect = 6.2
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 43 ILLVGPTGCGKTLMVKTLA 61
+ G GKT + TLA
Sbjct: 26 TEMFGEFRTGKTQICHTLA 44
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 25.0 bits (53), Expect = 6.2
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+++VG CGKT ++ +K
Sbjct: 5 LVIVGDGACGKTCLLIVNSK 24
>d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK
{Escherichia coli [TaxId: 562]}
Length = 327
Score = 25.6 bits (55), Expect = 6.4
Identities = 12/67 (17%), Positives = 25/67 (37%), Gaps = 5/67 (7%)
Query: 43 ILLVGPTGCGKTLMVKTLAKII-----NVPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
+ + G G GK+ ++ ++ V +I VD +S G + D + E
Sbjct: 57 LGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPSSPVTGGSILGDKTRMNDLARAEA 116
Query: 98 DYDVELA 104
+ +
Sbjct: 117 AFIRPVP 123
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 25.0 bits (53), Expect = 6.4
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++L+G GK+ +V
Sbjct: 6 LVLLGEAAVGKSSIVLRFVS 25
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 25.0 bits (53), Expect = 7.1
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+ L+G TG GK+ ++ +
Sbjct: 7 VCLLGDTGVGKSSIMWRFVE 26
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 25.1 bits (53), Expect = 7.1
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
I ++G GK+ + +
Sbjct: 7 IAILGYRSVGKSSLTIQFVE 26
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 24.9 bits (53), Expect = 7.3
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 1/57 (1%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPIIVVDATSFTEAGYVGDDVESIIQKLLHECDY 99
+LL+G GK+ +VK + KII+ + T FT + Q+ +
Sbjct: 5 LLLLGAGESGKSTIVKQM-KIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERKKWI 60
>d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC
{Synechococcus sp. strain PCC 7942 (Anacystis nidulans
R2) [TaxId: 1140]}
Length = 242
Score = 25.0 bits (53), Expect = 7.5
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 41 SNILLVGPTGCGKTLMVKTLA 61
+ L+ G +G GKTL
Sbjct: 27 RSTLVSGTSGTGKTLFSIQFL 47
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 25.0 bits (53), Expect = 8.0
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 40 KSNILLVGPTGCGKTLMVKTLAK 62
K I++VG + CGKT ++ AK
Sbjct: 2 KCKIVVVGDSQCGKTALLHVFAK 24
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 24.7 bits (52), Expect = 8.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+++VG GK+ M++ K
Sbjct: 5 MVVVGNGAVGKSSMIQRYCK 24
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 24.7 bits (52), Expect = 8.0
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+L +G GKT ++ L
Sbjct: 3 LLFLGLDNAGKTTLLHMLKN 22
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 24.6 bits (52), Expect = 8.1
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+++VG G GK+ + L +
Sbjct: 6 LVVVGAGGVGKSALTIQLIQ 25
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 24.6 bits (52), Expect = 8.2
Identities = 9/20 (45%), Positives = 11/20 (55%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++LVG G GKT VK
Sbjct: 6 LVLVGDGGTGKTTFVKRHLT 25
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 24.5 bits (52), Expect = 8.4
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPII 69
IL++G GKT ++ L +V I
Sbjct: 15 ILMLGLDAAGKTTILYKLKLGQSVTTI 41
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 25.0 bits (53), Expect = 8.4
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIINVPII 69
I + GP+G GK + K +A+ + ++
Sbjct: 6 ITIDGPSGAGKGTLCKAMAEALQWHLL 32
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 24.5 bits (52), Expect = 8.5
Identities = 8/26 (30%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 37 YLEKSNILLVGPTGCGKTLMVKTLAK 62
Y K ++L+G GKT +V +
Sbjct: 2 YSFK--VVLLGEGCVGKTSLVLRYCE 25
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 24.7 bits (52), Expect = 8.6
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++ +G GKT ++ L
Sbjct: 16 LVFLGLDNAGKTTLLHMLKD 35
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 24.8 bits (53), Expect = 8.7
Identities = 9/26 (34%), Positives = 13/26 (50%), Gaps = 2/26 (7%)
Query: 37 YLEKSNILLVGPTGCGKTLMVKTLAK 62
YL K +L +G +G GKT +
Sbjct: 4 YLIK--LLALGDSGVGKTTFLYRYTD 27
>d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic
domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 251
Score = 25.1 bits (53), Expect = 8.8
Identities = 7/19 (36%), Positives = 9/19 (47%)
Query: 43 ILLVGPTGCGKTLMVKTLA 61
L G GK+ + TLA
Sbjct: 37 TELFGEFRTGKSQLCHTLA 55
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 24.7 bits (52), Expect = 8.8
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
IL++G G GKT ++ L
Sbjct: 8 ILILGLDGAGKTTILYRLQV 27
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 24.6 bits (52), Expect = 9.0
Identities = 11/78 (14%), Positives = 21/78 (26%), Gaps = 9/78 (11%)
Query: 43 ILLVGPTGCGKTLMVKTLAKIIN-----VPIIVVDATSFTEAGYVGDDVESIIQKLLHEC 97
+ +G GKT ++K L + +I D E
Sbjct: 5 LAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHDMDVDKPGKDSYELRK----AGA 60
Query: 98 DYDVELAEQSIIYIDEID 115
+ ++Q + E
Sbjct: 61 AQTIVASQQRWALMTETP 78
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 24.6 bits (52), Expect = 9.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++VG GKT ++ +
Sbjct: 8 CVVVGDGAVGKTCLLISYTT 27
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 24.6 bits (52), Expect = 9.3
Identities = 8/20 (40%), Positives = 10/20 (50%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+ LVG GKT V +A
Sbjct: 5 LTLVGLQYSGKTTFVNVIAS 24
>d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 427
Score = 25.1 bits (53), Expect = 9.3
Identities = 6/14 (42%), Positives = 10/14 (71%)
Query: 44 LLVGPTGCGKTLMV 57
++GP G GK+ M+
Sbjct: 29 SIIGPNGSGKSNMM 42
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae
[TaxId: 1313]}
Length = 223
Score = 24.6 bits (52), Expect = 9.3
Identities = 8/32 (25%), Positives = 15/32 (46%)
Query: 38 LEKSNILLVGPTGCGKTLMVKTLAKIINVPII 69
++ I + GP GK+ + K +AK +
Sbjct: 1 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYL 32
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 24.6 bits (52), Expect = 9.3
Identities = 4/20 (20%), Positives = 11/20 (55%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
++++G G GK+ + +
Sbjct: 6 LVVLGSGGVGKSALTVQFVQ 25
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 24.6 bits (52), Expect = 9.4
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+ + G G GK+ +V
Sbjct: 5 LAIFGRAGVGKSALVVRFLT 24
>d2z0da1 d.3.1.22 (A:5-354) Cysteine protease ATG4B {Human (Homo
sapiens) [TaxId: 9606]}
Length = 350
Score = 25.0 bits (54), Expect = 9.5
Identities = 11/89 (12%), Positives = 30/89 (33%), Gaps = 3/89 (3%)
Query: 86 VESIIQKLLHECDY---DVELAEQSIIYIDEIDKISKKTDVVSGKDVSGEGVQQSLLKLI 142
V +++KL + V +A + + ++EI ++ + + +G +
Sbjct: 144 VAQVLKKLAVFDTWSSLAVHIAMDNTVVMEEIRRLCRTSVPCAGATAFPADSDRHCNGFP 203
Query: 143 EGVNLSITSLAEKKNPSQNPQVFNIDTTN 171
G ++ + P + N
Sbjct: 204 AGAEVTNRPSPWRPLVLLIPLRLGLTDIN 232
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 24.5 bits (52), Expect = 9.6
Identities = 9/26 (34%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 37 YLEKSNILLVGPTGCGKTLMVKTLAK 62
Y+ K IL++G + GKT + A
Sbjct: 4 YMFK--ILIIGNSSVGKTSFLFRYAD 27
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 24.5 bits (52), Expect = 9.7
Identities = 7/26 (26%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 37 YLEKSNILLVGPTGCGKTLMVKTLAK 62
+L K L++G G GK+ ++ +
Sbjct: 4 FLFK--FLVIGNAGTGKSCLLHQFIE 27
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 24.6 bits (52), Expect = 9.8
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 43 ILLVGPTGCGKTLMVKTLAK 62
+++VG G GK+ + +
Sbjct: 7 LVVVGDGGVGKSALTIQFFQ 26
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.138 0.380
Gapped
Lambda K H
0.267 0.0435 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 810,175
Number of extensions: 36496
Number of successful extensions: 356
Number of sequences better than 10.0: 1
Number of HSP's gapped: 341
Number of HSP's successfully gapped: 215
Length of query: 225
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 143
Effective length of database: 1,281,736
Effective search space: 183288248
Effective search space used: 183288248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.2 bits)