RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5911
(1242 letters)
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 1055 bits (2730), Expect = 0.0
Identities = 388/592 (65%), Positives = 481/592 (81%), Gaps = 7/592 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G+P+VIEN+EG RTTPSVV +T+D +VG PAKRQA+TNP NT+++I
Sbjct: 10 GTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRL+GR+ DE VQKDIK+VPYKIV ADNGDAWVE+ + P +ISA IL+K+K AE
Sbjct: 70 KRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQKLKKDAED 127
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L EK+ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK D
Sbjct: 128 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-GDEK 186
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I+VYDLGGGTFD+S++EI G+ FEVLSTNGDT LGG+DFD RII++L EFK ENG
Sbjct: 187 ILVYDLGGGTFDVSILEI----GDGVFEVLSTNGDTHLGGDDFDQRIIDYLADEFKKENG 242
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D +A+QRLKEAAEKAKIELS+A+QT+INLP+ITAD +GPKHL +K+TR+K E L
Sbjct: 243 IDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELT 302
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+ ++++PC+ AL DA + S I E+ILVGG TRMP VQ++V EFF KE K +NPDE
Sbjct: 303 EDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPNKGVNPDE 362
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
VA+GA++Q GVL+G VKDVLLLDVTPL+LGIET+GGVMT LIE+NTTIPT+K+QVFSTA
Sbjct: 363 VVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTA 422
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQ +VTIH LQGER+ A+ NKSLG+F+L I PAPRGVPQIEV+FD+DANGI++V+AK
Sbjct: 423 ADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANGIVHVSAK 482
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI I +S GLS+ EIE M+KDAE N+E DKK +ELV+ +N+ADS I +K
Sbjct: 483 DKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKT 542
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LK+ K+ +EKE IE +I L+ +KG+D E IK E+L + S+ + +
Sbjct: 543 LKELGDKVPADEKEKIEAAIKELKEALKGEDKEAIKAKTEELTQASQKLGEA 594
Score = 1021 bits (2644), Expect = 0.0
Identities = 370/536 (69%), Positives = 450/536 (83%), Gaps = 7/536 (1%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAV+ G+P+VIEN+EG RTTPSVV +T+D +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NT+++IKRL+GR+ DE VQ +K+VPYKIV ADNGDAWVE+ KK P +ISA IL+K
Sbjct: 63 ENTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKADNGDAWVEIDGKKYTPQEISAMILQK 120
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K AE +L EK+ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLD
Sbjct: 121 LKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 180
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
KK D I+VYDLGGGTFD+S++EI G+ FEVLSTNGDT LGG+DFD RII++L
Sbjct: 181 KK-GDEKILVYDLGGGTFDVSILEI----GDGVFEVLSTNGDTHLGGDDFDQRIIDYLAD 235
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK ENG+DL D +A+QRLKEAAEKAKIELS+A+QT+INLP+ITAD +GPKHL +K+TR
Sbjct: 236 EFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTR 295
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+K E L EDL+ ++++PC+ AL DA + S I E+ILVGG TRMP VQ++V EFF KE
Sbjct: 296 AKFEELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFFGKEPN 355
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
K +NPDE VA+GA++Q GVL+G VKDVLLLDVTPL+LGIET+GGVMT LIE+NTTIPT+K
Sbjct: 356 KGVNPDEVVAIGAAIQGGVLAGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKK 415
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+QVFSTA DNQ +VTIH LQGER+ A+ NKSLG+F+L I PAPRGVPQIEV+FD+DANG
Sbjct: 416 SQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDANG 475
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
I++V+AKDK TGKEQSI I +S GLS+ EIE M+KDAE N+E DKK +ELV+ +N+
Sbjct: 476 IVHVSAKDKGTGKEQSITITASSGLSDEEIERMVKDAEANAEEDKKRKELVEARNQ 531
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this family
are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone
system. All members of the seed alignment were taken from
completely sequenced bacterial or archaeal genomes and
(except for Mycoplasma sequence) found clustered with
other genes of this systems. This model excludes DnaK
homologs that are not DnaK itself, such as the heat shock
cognate protein HscA (TIGR01991). However, it is not
designed to distinguish among DnaK paralogs in
eukaryotes. Note that a number of dnaK genes have shadow
ORFs in the same reverse (relative to dnaK) reading
frame, a few of which have been assigned glutamate
dehydrogenase activity. The significance of this
observation is unclear; lengths of such shadow ORFs are
highly variable as if the presumptive protein product is
not conserved [Protein fate, Protein folding and
stabilization].
Length = 595
Score = 882 bits (2281), Expect = 0.0
Identities = 362/592 (61%), Positives = 456/592 (77%), Gaps = 7/592 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G+P VI N+EG RTTPSVV +T++ +VG PAKRQA+TNP NT+Y+I
Sbjct: 8 GTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSI 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KR +GR++ + V ++ K VPYK+V D GD V+V + P +ISA IL+K+K AE
Sbjct: 68 KRFMGRRF--DEVTEEAKRVPYKVVG-DGGDVRVKVDGKEYTPQEISAMILQKLKKDAEA 124
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L EK+ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK D
Sbjct: 125 YLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKSKKDEK 184
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I+V+DLGGGTFD+S++EI G+ FEVLST GDT LGG+DFD RII+ L EFK E G
Sbjct: 185 ILVFDLGGGTFDVSILEI----GDGVFEVLSTAGDTHLGGDDFDQRIIDWLADEFKKEEG 240
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLS D +A+QRLKEAAEKAKIELS+ T+INLP+ITAD +GPKHL + +TR+K E L
Sbjct: 241 IDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELT 300
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
DL+ ++ +P AL DA + S I E+ILVGG TR+P VQ++V +FF KE K +NPDE
Sbjct: 301 ADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPNKSVNPDE 360
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
VA+GA++Q GVL G VKDVLLLDVTPL+LGIET+GGVMT LIE+NTTIPT+K+QVFSTA
Sbjct: 361 VVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTA 420
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQ +V IH LQGER A+ NKSLG+F+L I PAPRGVPQIEV+FD+DANGIL+V+AK
Sbjct: 421 ADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANGILHVSAK 480
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGKEQSI I +S GLSE EIE M+K+AE N+E DKK +E ++ +N ADS +K
Sbjct: 481 DKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKT 540
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
LK+ K+ EEKE IEK+++ L+ +KG+D+E IK E+L + + + +
Sbjct: 541 LKEAGDKLPAEEKEKIEKAVAELKEALKGEDVEEIKAKTEELQQALQKLAEA 592
Score = 858 bits (2218), Expect = 0.0
Identities = 347/536 (64%), Positives = 424/536 (79%), Gaps = 7/536 (1%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAV+ G+P VI N+EG RTTPSVV +T++ +VG PAKRQA+TNP
Sbjct: 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNP 60
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NT+Y+IKR +GR++ + V K VPYK+V D GD V+V K+ P +ISA IL+K
Sbjct: 61 ENTIYSIKRFMGRRF--DEVTEEAKRVPYKVVG-DGGDVRVKVDGKEYTPQEISAMILQK 117
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K AE +L EK+ +AVITVPAYFND+QRQATKDAGKIAGLEVLRIINEPTAAALAYGLD
Sbjct: 118 LKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 177
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K D I+V+DLGGGTFD+S++EI G+ FEVLST GDT LGG+DFD RII+ L
Sbjct: 178 KSKKDEKILVFDLGGGTFDVSILEI----GDGVFEVLSTAGDTHLGGDDFDQRIIDWLAD 233
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK E G+DLS D +A+QRLKEAAEKAKIELS+ T+INLP+ITAD +GPKHL + +TR
Sbjct: 234 EFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTR 293
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+K E L DL+ ++ +P AL DA + S I E+ILVGG TR+P VQ++V +FF KE
Sbjct: 294 AKFEELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFGKEPN 353
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
K +NPDE VA+GA++Q GVL G VKDVLLLDVTPL+LGIET+GGVMT LIE+NTTIPT+K
Sbjct: 354 KSVNPDEVVAIGAAIQGGVLKGDVKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPTKK 413
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+QVFSTA DNQ +V IH LQGER A+ NKSLG+F+L I PAPRGVPQIEV+FD+DANG
Sbjct: 414 SQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFDIDANG 473
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
IL+V+AKDK TGKEQSI I +S GLSE EIE M+K+AE N+E DKK +E ++ +N
Sbjct: 474 ILHVSAKDKGTGKEQSITITASSGLSEEEIERMVKEAEANAEEDKKRKEEIEARNN 529
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold many
proteins. Hsp70 assisted folding involves repeated cycles
of substrate binding and release. Hsp70 activity is ATP
dependent. Hsp70 proteins are made up of two regions: the
amino terminus is the ATPase domain and the carboxyl
terminus is the substrate binding region.
Length = 598
Score = 855 bits (2212), Expect = 0.0
Identities = 359/596 (60%), Positives = 462/596 (77%), Gaps = 11/596 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G P+VI N EG RTTPSVV +T R+ VG AKRQA+TNP NT++++
Sbjct: 7 GTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERL-VGQAAKRQAVTNPKNTVFSV 65
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV--KDQYCAPPQISAEILKKMKSTA 768
KRLIGRK++D +VQ+DIK VPYK+V NGDA VEV + P QISA +L+K+K TA
Sbjct: 66 KRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQKLKETA 125
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E +L E + AVITVPAYFND+QRQATKDAG+IAGL VLRIINEPTAAALAYGLDKK +
Sbjct: 126 EAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGLDKKDKE 185
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
R ++V+DLGGGTFD+S++EI G+ FEVL+TNGDT LGGEDFD R+++H + EFK +
Sbjct: 186 RNVLVFDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGEDFDNRLVDHFVEEFKKK 241
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DLS D A+QRL+EAAEKAKIELS + QT+INLP+ITA +G K ++ +TR+K E
Sbjct: 242 YGIDLSKDPRALQRLREAAEKAKIELS-SNQTEINLPFITAMADG-KDVSGTLTRAKFEE 299
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L DL ++L+P E AL DAK+ KS+I E++LVGG TR+P VQ++V EFF KE K +NP
Sbjct: 300 LCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEPSKGVNP 359
Query: 1009 DEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQV 1066
DEAVA+GA+VQAGVLSG VKDVLLLDVTPL+LGIET+GGVMT LI +NTTIPT+K+Q+
Sbjct: 360 DEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPTKKSQI 419
Query: 1067 FSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILN 1126
FSTA DNQT+V I QGER+ A NK LG F+L+ I PAPRGVPQIEV+FD+DANGIL
Sbjct: 420 FSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDANGILT 479
Query: 1127 VTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISI 1186
V+AKDK TGKEQ I I +S GLS+ EIE M+KDAE + DKK +E ++ KNEA+ +
Sbjct: 480 VSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNEAEEYVYS 539
Query: 1187 VKKNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
++K+LK+E K+ + +K+ +E++I L+ ++G+D E I+ E+L K+ + I ++
Sbjct: 540 LEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEIEAKTEELQKVVQPIGER 595
Score = 830 bits (2146), Expect = 0.0
Identities = 357/618 (57%), Positives = 457/618 (73%), Gaps = 24/618 (3%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+IGIDLGTTNSCVAV+ G P+VI N EG RTTPSVV +T R+ VG AKRQA+TNP
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERL-VGQAAKRQAVTNPK 59
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV--KDKKLAPPQISAEILK 122
NT++++KRLIGRK++D +VQ +K VPYK+V NGDA VEV + P QISA +L+
Sbjct: 60 NTVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGETFTPEQISAMVLQ 119
Query: 123 KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 182
K+K TAE +L E + AVITVPAYFND+QRQATKDAG+IAGL VLRIINEPTAAALAYGL
Sbjct: 120 KLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYGL 179
Query: 183 DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 242
DKK +R ++V+DLGGGTFD+S++EI G+ FEVL+TNGDT LGGEDFD R+++H +
Sbjct: 180 DKKDKERNVLVFDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGEDFDNRLVDHFV 235
Query: 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKIT 302
EFK + G+DLS D A+QRL+EAAEKAKIELS + QT+INLP+ITA +G K ++ +T
Sbjct: 236 EEFKKKYGIDLSKDPRALQRLREAAEKAKIELS-SNQTEINLPFITAMADG-KDVSGTLT 293
Query: 303 RSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEV 362
R+K E L DL ++L+P E AL DAK+ KS+I E++LVGG TR+P VQ++V EFF KE
Sbjct: 294 RAKFEELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFFGKEP 353
Query: 363 KKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIP 420
K +NPDEAVA+GA+VQAGVLSG VKDVLLLDVTPL+LGIET+GGVMT LI +NTTIP
Sbjct: 354 SKGVNPDEAVAIGAAVQAGVLSGTFDVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIP 413
Query: 421 TRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLD 480
T+K+Q+FSTA DNQT+V I QGER+ A NK LG F+L+ I PAPRGVPQIEV+FD+D
Sbjct: 414 TKKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDID 473
Query: 481 ANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQ 540
ANGIL V+AKDK TGKEQ I I +S GLS+ EIE M+KDAE + DKK +E ++ KNE
Sbjct: 474 ANGILTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDKKRKERIEAKNE- 532
Query: 541 IIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQT 600
EE +V +K + DK+ + + +E I L E+ ++ + +
Sbjct: 533 ---AEE----YVYSLEKSLKEEGDKLPEADKKKVEEAIEWL-----KEELEGEDKEEIEA 580
Query: 601 KESEIIFLIFKLIKKFYK 618
K E+ ++ + ++ Y+
Sbjct: 581 KTEELQKVVQPIGERMYQ 598
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 777 bits (2009), Expect = 0.0
Identities = 354/592 (59%), Positives = 463/592 (78%), Gaps = 5/592 (0%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA++ +P+VIENSEG RTTPSVV +TED + +VG+ AKRQA+TNP NT++A
Sbjct: 49 GTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFAT 108
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR+Y ++ +K+ K++PYKIV A NGDAW+E + + +P QI A +L+KMK TAE+
Sbjct: 109 KRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKMKETAES 168
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L K+++AVITVPAYFNDSQRQATKDAGKIAGL+VLRIINEPTAAALA+G+DK D +
Sbjct: 169 YLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDKN-DGKT 227
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS++EI FEV +TNG+T LGGEDFD RI+N+LI EFK + G
Sbjct: 228 IAVYDLGGGTFDISILEILG----GVFEVKATNGNTSLGGEDFDQRILNYLIAEFKKQQG 283
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LA+QRL+EAAE AKIELS+ QT+INLP+ITAD++GPKHL +K++R+KLE L
Sbjct: 284 IDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELT 343
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
DL+ K+++PCE + DA + K +++++ILVGG TRMP V + V + F KE K +NPDE
Sbjct: 344 HDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSKGVNPDE 403
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GA++QAGVL G +KD+LLLDVTPL+LGIET+GGV T LI +NTTIPT+K+QVFSTA
Sbjct: 404 AVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTA 463
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQT V I QGER+ A+ NK LG+FDL I PAPRGVPQIEV+FD+DANGI+N++A
Sbjct: 464 ADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGIMNISAV 523
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK TGK+Q I I+SSGGLS+ EIE M+K+AE E D+K +ELV KNEA++ I V+K
Sbjct: 524 DKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQ 583
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L D KI+D +K+ +++ I+ L + +D++ IK + L + S I ++
Sbjct: 584 LSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQ 635
Score = 758 bits (1959), Expect = 0.0
Identities = 357/613 (58%), Positives = 459/613 (74%), Gaps = 18/613 (2%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
I+GIDLGTTNSCVA++ +P+VIENSEG RTTPSVV +TED + +VG+ AKRQA+TNP
Sbjct: 43 IVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPE 102
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
NT++A KRLIGR+Y ++ + K++PYKIV A NGDAW+E + KK +P QI A +L+KM
Sbjct: 103 NTVFATKRLIGRRYDEDATKKEQKILPYKIVRASNGDAWIEAQGKKYSPSQIGAFVLEKM 162
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K TAE++L K+++AVITVPAYFNDSQRQATKDAGKIAGL+VLRIINEPTAAALA+G+DK
Sbjct: 163 KETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGMDK 222
Query: 185 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
D + I VYDLGGGTFDIS++EI FEV +TNG+T LGGEDFD RI+N+LI E
Sbjct: 223 N-DGKTIAVYDLGGGTFDISILEILG----GVFEVKATNGNTSLGGEDFDQRILNYLIAE 277
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
FK + G+DL D LA+QRL+EAAE AKIELS+ QT+INLP+ITAD++GPKHL +K++R+
Sbjct: 278 FKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRA 337
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
KLE L DL+ K+++PCE + DA + K +++++ILVGG TRMP V + V + F KE K
Sbjct: 338 KLEELTHDLLKKTIEPCEKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFGKEPSK 397
Query: 365 DINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKT 424
+NPDEAVA+GA++QAGVL G +KD+LLLDVTPL+LGIET+GGV T LI +NTTIPT+K+
Sbjct: 398 GVNPDEAVAMGAAIQAGVLKGEIKDLLLLDVTPLSLGIETLGGVFTRLINRNTTIPTKKS 457
Query: 425 QVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGI 484
QVFSTA DNQT V I QGER+ A+ NK LG+FDL I PAPRGVPQIEV+FD+DANGI
Sbjct: 458 QVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVTFDVDANGI 517
Query: 485 LNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKN--EQII 542
+N++A DK TGK+Q I I+SSGGLS+ EIE M+K+AE E D+K +ELV KN E +I
Sbjct: 518 MNISAVDKSTGKKQEITIQSSGGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLI 577
Query: 543 ILEEKFCSFVLETKKETDYD--EDKIRKLKEIVIENIIIELIPITD---------SMEMF 591
EK S + + + D D + KI KL+ + + + T S + +
Sbjct: 578 YSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSEDVDSIKDKTKQLQEASWKISQQAY 637
Query: 592 AKNFDSNQTKESE 604
+ NQ E
Sbjct: 638 KQGNSDNQQSEQS 650
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 735 bits (1900), Expect = 0.0
Identities = 343/594 (57%), Positives = 443/594 (74%), Gaps = 9/594 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VAV+ GKP VI N+EG RTTPS+V YT+ ++VG AKRQA+ NP NT Y++
Sbjct: 10 GTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSV 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVE--VKDQYCAPPQISAEILKKMKSTA 768
KR IGRK EI + + K V YK+ NG+ +E ++ +P +ISA++L+K+ A
Sbjct: 70 KRFIGRK-FSEISE-EAKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVLRKLVEDA 127
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
+L E + +AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA+LAYGLDKK ++
Sbjct: 128 SKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGLDKK-NN 186
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
I+V+DLGGGTFD+S++E+ G+ FEVLST+GDT LGG+DFD +I+N LI EFK +
Sbjct: 187 ETILVFDLGGGTFDVSILEV----GDGVFEVLSTSGDTHLGGDDFDKKIVNWLIKEFKKK 242
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DLS D A+QRL EAAEKAKIELSN QT+INLP+ITA + GPKH+ +TR+K E
Sbjct: 243 EGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEE 302
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L DLI++ P E AL DAK+DKS I E++LVGG TR+P +Q++V + K+ + +NP
Sbjct: 303 LCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKKPNQSVNP 362
Query: 1009 DEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
DE VA+GA+VQAGVL+G VKD+LLLDVTPL+LG+ET+GGVMT +I +NTTIPT+K++VFS
Sbjct: 363 DEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPTKKSEVFS 422
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
TA DNQT+V IH LQGER+ A NKSLG F L+ I PAPRGVPQIEV+FD+DANGIL+VT
Sbjct: 423 TAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDANGILSVT 482
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
AKDK TGKEQSI I+ + L + E+E M+K+AE N+ DK+ E + KN+A+S +
Sbjct: 483 AKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAE 542
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
K LK+ KI++E+KE IE I L ++ D+ E IK E+L K I K+
Sbjct: 543 KQLKELKDKISEEKKEKIENLIKKLRQALQNDNYESIKSLLEELQKALMEIGKE 596
Score = 723 bits (1868), Expect = 0.0
Identities = 343/616 (55%), Positives = 450/616 (73%), Gaps = 22/616 (3%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
K++GIDLGTTNS VAV+ GKP VI N+EG RTTPS+V YT+ ++VG AKRQA+ NP
Sbjct: 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVE--VKDKKLAPPQISAEIL 121
NT Y++KR IGRK EI + K V YK+ NG+ +E +K +P +ISA++L
Sbjct: 63 ENTFYSVKRFIGRK-FSEISEE-AKQVSYKVKTDSNGNIKIECPALNKDFSPEEISAQVL 120
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+K+ A +L E + +AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA+LAYG
Sbjct: 121 RKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYG 180
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
LDKK ++ I+V+DLGGGTFD+S++E+ G+ FEVLST+GDT LGG+DFD +I+N L
Sbjct: 181 LDKK-NNETILVFDLGGGTFDVSILEV----GDGVFEVLSTSGDTHLGGDDFDKKIVNWL 235
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
I EFK + G+DLS D A+QRL EAAEKAKIELSN QT+INLP+ITA + GPKH+ +
Sbjct: 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTL 295
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361
TR+K E L DLI++ P E AL DAK+DKS I E++LVGG TR+P +Q++V + K+
Sbjct: 296 TRAKFEELCSDLINRCRIPVENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLGKK 355
Query: 362 VKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPT 421
+ +NPDE VA+GA+VQAGVL+G VKD+LLLDVTPL+LG+ET+GGVMT +I +NTTIPT
Sbjct: 356 PNQSVNPDEVVAIGAAVQAGVLAGEVKDILLLDVTPLSLGVETLGGVMTKIIPRNTTIPT 415
Query: 422 RKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481
+K++VFSTA DNQT+V IH LQGER+ A NKSLG F L+ I PAPRGVPQIEV+FD+DA
Sbjct: 416 KKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVTFDIDA 475
Query: 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQI 541
NGIL+VTAKDK TGKEQSI I+ + L + E+E M+K+AE N+ DK+ E + KN+
Sbjct: 476 NGILSVTAKDKGTGKEQSITIQGASTLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQA- 534
Query: 542 IILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTK 601
E C + +K+ +DKI + K+ IEN+I +L + N++S ++
Sbjct: 535 ----ESLC---YQAEKQLKELKDKISEEKKEKIENLIKKLRQALQN-----DNYESIKSL 582
Query: 602 ESEIIFLIFKLIKKFY 617
E+ + ++ K+ Y
Sbjct: 583 LEELQKALMEIGKEVY 598
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 721 bits (1864), Expect = 0.0
Identities = 296/539 (54%), Positives = 401/539 (74%), Gaps = 13/539 (2%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
+I+GIDLGTTNS VAV+ GKP VI N+EG RTTPSVVG+T+D ++VG A+RQ + NP
Sbjct: 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAE 119
NT Y +KR IGR+Y DE+ K VPY I + G+ V +K +++ AP ++SA
Sbjct: 63 QNTFYNLKRFIGRRY-DELDPES-KRVPYTIRRNEQGN--VRIKCPRLEREFAPEELSAM 118
Query: 120 ILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179
IL+K+ A +L E + AVITVPAYFNDSQRQAT+DAG+IAGLEV RI+NEPTAAALA
Sbjct: 119 ILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALA 178
Query: 180 YGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239
YGLD+ + ++V+DLGGGTFD+S++E+ N FEV +T+GDT LGG DFD RI++
Sbjct: 179 YGLDRS-SSQTVLVFDLGGGTFDVSLLEVGN----GVFEVKATSGDTQLGGNDFDKRIVD 233
Query: 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNV 299
L +F + G+DL D A+QRL EAAEKAKIELS TDI+LP+ITA ++GPKH+
Sbjct: 234 WLAEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIET 293
Query: 300 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE 359
++ R + ESL DL+ + L+P + AL DA + I E++LVGG TRMP+VQ++V
Sbjct: 294 RLDRKQFESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIP 353
Query: 360 KEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTI 419
+E +++NPDE VAVGA++QAG+L+G +KD+LLLDVTPL+LG+ET+GGVM LI +NTTI
Sbjct: 354 REPNQNVNPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTI 413
Query: 420 PTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDL 479
P R++ VFST+E+NQ+SV IH QGER+ AS NKSLG+F L+ I PAPRGVPQ++V+FD+
Sbjct: 414 PVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDI 473
Query: 480 DANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKN 538
DANGIL V+A D+ TG+EQS+ I+ + LSE E+ MI++AE ++ D++ E ++ +N
Sbjct: 474 DANGILQVSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRN 532
Score = 712 bits (1839), Expect = 0.0
Identities = 298/594 (50%), Positives = 423/594 (71%), Gaps = 20/594 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VAV+ GKP VI N+EG RTTPSVVG+T+D ++VG A+RQ + NP NT Y +
Sbjct: 10 GTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNL 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVK----DQYCAPPQISAEILKKMKS 766
KR IGR+Y + + + K VPY I + G+ V +K ++ AP ++SA IL+K+
Sbjct: 70 KRFIGRRYDE--LDPESKRVPYTIRRNEQGN--VRIKCPRLEREFAPEELSAMILRKLAD 125
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKP 826
A +L E + AVITVPAYFNDSQRQAT+DAG+IAGLEV RI+NEPTAAALAYGLD+
Sbjct: 126 DASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAYGLDRS- 184
Query: 827 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFK 886
+ ++V+DLGGGTFD+S++E+ N FEV +T+GDT LGG DFD RI++ L +F
Sbjct: 185 SSQTVLVFDLGGGTFDVSLLEVGN----GVFEVKATSGDTQLGGNDFDKRIVDWLAEQFL 240
Query: 887 IENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 946
+ G+DL D A+QRL EAAEKAKIELS TDI+LP+ITA ++GPKH+ ++ R +
Sbjct: 241 EKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQF 300
Query: 947 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDI 1006
ESL DL+ + L+P + AL DA + I E++LVGG TRMP+VQ++V +E +++
Sbjct: 301 ESLCGDLLDRLLRPVKRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLIPREPNQNV 360
Query: 1007 NPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQV 1066
NPDE VAVGA++QAG+L+G +KD+LLLDVTPL+LG+ET+GGVM LI +NTTIP R++ V
Sbjct: 361 NPDEVVAVGAAIQAGILAGELKDLLLLDVTPLSLGLETIGGVMKKLIPRNTTIPVRRSDV 420
Query: 1067 FSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILN 1126
FST+E+NQ+SV IH QGER+ AS NKSLG+F L+ I PAPRGVPQ++V+FD+DANGIL
Sbjct: 421 FSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVAFDIDANGILQ 480
Query: 1127 VTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISI 1186
V+A D+ TG+EQS+ I+ + LSE E+ MI++AE ++ D++ E ++ +N A + I+
Sbjct: 481 VSATDRTTGREQSVTIQGASTLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQ 540
Query: 1187 VKKNLKDEN----TKITDEEKESIEKSISNLELLIKGDD---IELIKKGNEDLL 1233
++ L+D + ++ ++E ++ +++ ++ DD ++L ++ L
Sbjct: 541 AERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEAL 594
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 717 bits (1852), Expect = 0.0
Identities = 319/577 (55%), Positives = 426/577 (73%), Gaps = 7/577 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL GKP VI NSEGGRTTPS+VG+ + +VG AKRQA+TN NT+Y+I
Sbjct: 10 GTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KR IGR++ D ++ VPY V + V+++ + P +ISA IL+K+K AE
Sbjct: 70 KRFIGRRWDDTEEER--SRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQKLKQDAEA 127
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYF D+QRQATKDAG IAGLEVLRIINEPTAAALAYGLDK+ +++
Sbjct: 128 YLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLDKQDQEQL 187
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I+V+DLGGGTFD+S++++ G+ FEV +T G+ LGG+DFD I++ L+ F+ + G
Sbjct: 188 ILVFDLGGGTFDVSILQL----GDGVFEVKATAGNNHLGGDDFDNCIVDWLVENFQQQEG 243
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLS D +A+QRL+EAAEKAKIELS+ T INLP+ITAD+ GPKHL +++TR+K E L
Sbjct: 244 IDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELT 303
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDINPD 1009
+DL+ +++P + AL DA + I +ILVGG TR+P VQ+ + +FF K+ + +NPD
Sbjct: 304 KDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPD 363
Query: 1010 EAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFST 1069
EAVA+GA++QAGVL G VKD+LLLDVTPL+LGIET+G V T +IE+NTTIPT K+QVFST
Sbjct: 364 EAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTSKSQVFST 423
Query: 1070 AEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTA 1129
A D QTSV IH LQGER A NKSLGKF L I PAPRGVPQIEVSF++D NGIL V+A
Sbjct: 424 ATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVNGILKVSA 483
Query: 1130 KDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKK 1189
+D+ TG+EQSI I ++GGLS EIE M ++AE +E D++ ++L++ KN+ADS + +
Sbjct: 484 QDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYES 543
Query: 1190 NLKDENTKITDEEKESIEKSISNLELLIKGDDIELIK 1226
LK+ I++E K+ E+ + LE + +I L +
Sbjct: 544 TLKENGELISEELKQRAEQKVEQLEAALTDPNISLEE 580
Score = 710 bits (1834), Expect = 0.0
Identities = 312/537 (58%), Positives = 408/537 (75%), Gaps = 7/537 (1%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
K+IGIDLGTTNSCVAVL GKP VI NSEGGRTTPS+VG+ + +VG AKRQA+TN
Sbjct: 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNA 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NT+Y+IKR IGR++ D + VPY V + V+++ + P +ISA IL+K
Sbjct: 63 ENTVYSIKRFIGRRWDD--TEEERSRVPYTCVKGRDDTVNVQIRGRNYTPQEISAMILQK 120
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K AE +L E + +AVITVPAYF D+QRQATKDAG IAGLEVLRIINEPTAAALAYGLD
Sbjct: 121 LKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGLD 180
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K+ +++I+V+DLGGGTFD+S++++ G+ FEV +T G+ LGG+DFD I++ L+
Sbjct: 181 KQDQEQLILVFDLGGGTFDVSILQL----GDGVFEVKATAGNNHLGGDDFDNCIVDWLVE 236
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
F+ + G+DLS D +A+QRL+EAAEKAKIELS+ T INLP+ITAD+ GPKHL +++TR
Sbjct: 237 NFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTR 296
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEV 362
+K E L +DL+ +++P + AL DA + I +ILVGG TR+P VQ+ + +FF K+
Sbjct: 297 AKFEELTKDLVEATIEPMQQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQP 356
Query: 363 KKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTR 422
+ +NPDEAVA+GA++QAGVL G VKD+LLLDVTPL+LGIET+G V T +IE+NTTIPT
Sbjct: 357 DRSVNPDEAVALGAAIQAGVLGGEVKDLLLLDVTPLSLGIETLGEVFTKIIERNTTIPTS 416
Query: 423 KTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482
K+QVFSTA D QTSV IH LQGER A NKSLGKF L I PAPRGVPQIEVSF++D N
Sbjct: 417 KSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVSFEIDVN 476
Query: 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
GIL V+A+D+ TG+EQSI I ++GGLS EIE M ++AE +E D++ ++L++ KN+
Sbjct: 477 GILKVSAQDQGTGREQSIRITNTGGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQ 533
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 703 bits (1817), Expect = 0.0
Identities = 339/591 (57%), Positives = 438/591 (74%), Gaps = 33/591 (5%)
Query: 651 GTTNSCVAVLNNG-KPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYA 709
GTTNS VAV+ G P+VIEN+EG R TPSVV ++++ ++VG AKRQA+ NP NT+++
Sbjct: 13 GTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFS 72
Query: 710 IKRLIGRKYTDEIVQKDIKMVPYKIVAADNGD-AWVEVKDQYCAPPQISAEILKKMKSTA 768
IKR IGR NG VEV + P +ISA IL K+K A
Sbjct: 73 IKRKIGRG--------------------SNGLKISVEVDGKKYTPEEISAMILTKLKEDA 112
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E +L EK+ AVITVPAYFND+QRQATKDA +IAGL VLR+INEPTAAALAYGLDK +
Sbjct: 113 EAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYGLDKG-KE 171
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
+ ++VYDLGGGTFD+S++EI G+ FEVL+T GD LGG+DFD +I++L+ EFK +
Sbjct: 172 KTVLVYDLGGGTFDVSLLEI----GDGVFEVLATGGDNHLGGDDFDNALIDYLVMEFKGK 227
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DL D A+QRL+EAAEKAKIELS+A QT INLP I D L ++TR+K E
Sbjct: 228 GGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI----DLLKELTRAKFEE 283
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L+ DL+ ++++P E AL DA ++KS I +ILVGG TR+P VQ++V EFF KE +K INP
Sbjct: 284 LILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKEPEKSINP 343
Query: 1009 DEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
DEAVA+GA++QA VLSG V DVLLLDV PL+LGIET+GGV TP+IE+NTTIP +K+Q FS
Sbjct: 344 DEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPVKKSQEFS 403
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
TA D QT+V IH QGER+ A+ NKSLG+F+L+ I PAPRGVPQIEV+FD+DANGILNVT
Sbjct: 404 TAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDANGILNVT 463
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
AKD TGKEQSI IK+S GLS+ EIE M++DAE N+ LDKKF ELV+ +NEA+S I ++
Sbjct: 464 AKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLE 523
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENI 1239
K LK E K+++EEKE IE++I++LE ++G + E IK E+L ++++ +
Sbjct: 524 KALK-EIVKVSEEEKEKIEEAITDLEEALEG-EKEEIKAKIEELQEVTQKL 572
Score = 691 bits (1785), Expect = 0.0
Identities = 335/597 (56%), Positives = 427/597 (71%), Gaps = 35/597 (5%)
Query: 4 KIIGIDLGTTNSCVAVLNNG-KPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITN 62
K IGIDLGTTNS VAV+ G P+VIEN+EG R TPSVV ++++ ++VG AKRQA+ N
Sbjct: 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDN 65
Query: 63 PNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGD-AWVEVKDKKLAPPQISAEIL 121
P NT+++IKR IGR NG VEV KK P +ISA IL
Sbjct: 66 PENTIFSIKRKIGRG--------------------SNGLKISVEVDGKKYTPEEISAMIL 105
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
K+K AE +L EK+ AVITVPAYFND+QRQATKDA +IAGL VLR+INEPTAAALAYG
Sbjct: 106 TKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAALAYG 165
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
LDK ++ ++VYDLGGGTFD+S++EI G+ FEVL+T GD LGG+DFD +I++L
Sbjct: 166 LDKG-KEKTVLVYDLGGGTFDVSLLEI----GDGVFEVLATGGDNHLGGDDFDNALIDYL 220
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
+ EFK + G+DL D A+QRL+EAAEKAKIELS+A QT INLP I D L ++
Sbjct: 221 VMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDI----DLLKEL 276
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361
TR+K E L+ DL+ ++++P E AL DA ++KS I +ILVGG TR+P VQ++V EFF KE
Sbjct: 277 TRAKFEELILDLLERTIEPVEQALKDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFGKE 336
Query: 362 VKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPT 421
+K INPDEAVA+GA++QA VLSG V DVLLLDV PL+LGIET+GGV TP+IE+NTTIP
Sbjct: 337 PEKSINPDEAVALGAAIQAAVLSGEVPDVLLLDVIPLSLGIETLGGVRTPIIERNTTIPV 396
Query: 422 RKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481
+K+Q FSTA D QT+V IH QGER+ A+ NKSLG+F+L+ I PAPRGVPQIEV+FD+DA
Sbjct: 397 KKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDIDA 456
Query: 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE-- 539
NGILNVTAKD TGKEQSI IK+S GLS+ EIE M++DAE N+ LDKKF ELV+ +NE
Sbjct: 457 NGILNVTAKDLGTGKEQSITIKASSGLSDEEIERMVEDAEANAALDKKFRELVEARNEAE 516
Query: 540 -QIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNF 595
I LE+ V +++E + E+ I L+E +E E+ + ++ +
Sbjct: 517 SLIYSLEKALKEIVKVSEEEKEKIEEAITDLEE-ALEGEKEEIKAKIEELQEVTQKL 572
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 659 bits (1702), Expect = 0.0
Identities = 311/584 (53%), Positives = 417/584 (71%), Gaps = 9/584 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VA + GKP ++ N+EG RTTPSVV YT++ +VG AKRQA+ NP NT +++
Sbjct: 47 GTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSV 106
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVE--VKDQYCAPPQISAEILKKMKSTA 768
KR IGRK ++ V ++ K V Y++V +NG+ ++ + A +ISA++L+K+ A
Sbjct: 107 KRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVLRKLVDDA 164
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
FLN+K+ KAVITVPAYFNDSQR ATKDAG+IAGLEVLRIINEPTAA+LAYG +KK ++
Sbjct: 165 SKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGFEKKSNE 224
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
I+V +DLGGGTFD+SV+E+ G+ FEVLST+GDT LGG+DFD RI++ L FK +
Sbjct: 225 TILV-FDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDWLASNFKKD 279
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DL D A+QRL EAAEKAKIELS+ QT I+LP+ITA +GPKH++ +TR+K E
Sbjct: 280 EGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEE 339
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L DL+ + P E AL DAK+ I E+ILVGG TR+P VQ++V + K+ +NP
Sbjct: 340 LCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKDPNVTVNP 399
Query: 1009 DEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
DE VA+GA+VQAGVL+G V D++LLDVTPL+LG+ET+GGVMT +I +NTT+PT K++VFS
Sbjct: 400 DEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPTSKSEVFS 459
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
TA D QTSV I+ LQGER+ NKSLG F L+ I PAPRGVPQIEV FD+DANGIL+V+
Sbjct: 460 TAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDANGILSVS 519
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
A DK TGK+Q I I + L + E+E M+++AE ++ DK+ + V KN+ADS + +
Sbjct: 520 ATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTE 579
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDL 1232
K LK+ K+ + KE +E + L+ I + +K L
Sbjct: 580 KQLKELGDKVPADVKEKVEAKLKELKDAIASGSTQKMKDAMAAL 623
Score = 647 bits (1671), Expect = 0.0
Identities = 309/565 (54%), Positives = 409/565 (72%), Gaps = 17/565 (3%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
K++GIDLGTTNS VA + GKP ++ N+EG RTTPSVV YT++ +VG AKRQA+ NP
Sbjct: 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNP 99
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVE--VKDKKLAPPQISAEIL 121
NT +++KR IGRK ++ V K V Y++V +NG+ ++ K+ A +ISA++L
Sbjct: 100 ENTFFSVKRFIGRKMSE--VDEESKQVSYRVVRDENGNVKLDCPAIGKQFAAEEISAQVL 157
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+K+ A FLN+K+ KAVITVPAYFNDSQR ATKDAG+IAGLEVLRIINEPTAA+LAYG
Sbjct: 158 RKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYG 217
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
+KK ++ I+V +DLGGGTFD+SV+E+ G+ FEVLST+GDT LGG+DFD RI++ L
Sbjct: 218 FEKKSNETILV-FDLGGGTFDVSVLEV----GDGVFEVLSTSGDTHLGGDDFDKRIVDWL 272
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
FK + G+DL D A+QRL EAAEKAKIELS+ QT I+LP+ITA +GPKH++ +
Sbjct: 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTL 332
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361
TR+K E L DL+ + P E AL DAK+ I E+ILVGG TR+P VQ++V + K+
Sbjct: 333 TRAKFEELCSDLLDRCKTPVENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLTGKD 392
Query: 362 VKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPT 421
+NPDE VA+GA+VQAGVL+G V D++LLDVTPL+LG+ET+GGVMT +I +NTT+PT
Sbjct: 393 PNVTVNPDEVVALGAAVQAGVLAGEVSDIVLLDVTPLSLGLETLGGVMTKIIPRNTTLPT 452
Query: 422 RKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 481
K++VFSTA D QTSV I+ LQGER+ NKSLG F L+ I PAPRGVPQIEV FD+DA
Sbjct: 453 SKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVKFDIDA 512
Query: 482 NGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQI 541
NGIL+V+A DK TGK+Q I I + L + E+E M+++AE ++ DK+ + V KN+
Sbjct: 513 NGILSVSATDKGTGKKQDITITGASTLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQAD 572
Query: 542 IILEEKFCSFVLETKKETDYDEDKI 566
S V +T+K+ DK+
Sbjct: 573 --------SVVYQTEKQLKELGDKV 589
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 635 bits (1640), Expect = 0.0
Identities = 256/380 (67%), Positives = 307/380 (80%), Gaps = 5/380 (1%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
+IGIDLGTTNSCVAV+ P+VIEN+EG RTTPSVV +T+D +VG+PAKRQA+TNP
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTLYA KRLIGR++ D VQ +K VPYKIV A NGDAWVE KK +P QI A +L K
Sbjct: 63 ENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHGKKYSPSQIGAFVLMK 122
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE +L + ++ AVITVPAYFNDSQRQATKDAG+IAGL VLR+INEPTAAALAYGLD
Sbjct: 123 MKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLD 182
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
KK DD++I VYDLGGGTFDIS++EI FEV STNGDTFLGGEDFD ++ HL+
Sbjct: 183 KK-DDKVIAVYDLGGGTFDISILEIQKGV----FEVKSTNGDTFLGGEDFDNALLRHLVK 237
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK E G+DL+ D++A+QRL+EAAEKAKIELS++ QTDINLPYITAD +GPKHLN+K+TR
Sbjct: 238 EFKKEQGIDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTR 297
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+K ESLV DLI ++++PC+ AL DA + KS I E+ILVGG TRMP VQ+ V E F KE
Sbjct: 298 AKFESLVGDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPS 357
Query: 364 KDINPDEAVAVGASVQAGVL 383
K +NPDEAVA+GA++Q GVL
Sbjct: 358 KGVNPDEAVAIGAAIQGGVL 377
Score = 624 bits (1612), Expect = 0.0
Identities = 252/373 (67%), Positives = 302/373 (80%), Gaps = 5/373 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ P+VIEN+EG RTTPSVV +T+D +VG+PAKRQA+TNP NTLYA
Sbjct: 10 GTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNPENTLYAT 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D VQKDIK VPYKIV A NGDAWVE + +P QI A +L KMK TAE
Sbjct: 70 KRLIGRRFDDPEVQKDIKNVPYKIVKASNGDAWVEAHGKKYSPSQIGAFVLMKMKETAEA 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L + ++ AVITVPAYFNDSQRQATKDAG+IAGL VLR+INEPTAAALAYGLDKK DD++
Sbjct: 130 YLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAYGLDKK-DDKV 188
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS++EI FEV STNGDTFLGGEDFD ++ HL+ EFK E G
Sbjct: 189 IAVYDLGGGTFDISILEIQKGV----FEVKSTNGDTFLGGEDFDNALLRHLVKEFKKEQG 244
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL+ D++A+QRL+EAAEKAKIELS++ QTDINLPYITAD +GPKHLN+K+TR+K ESLV
Sbjct: 245 IDLTKDNMALQRLREAAEKAKIELSSSLQTDINLPYITADASGPKHLNMKLTRAKFESLV 304
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
DLI ++++PC+ AL DA + KS I E+ILVGG TRMP VQ+ V E F KE K +NPDE
Sbjct: 305 GDLIKRTIEPCKKALKDAGVSKSDIGEVILVGGMTRMPKVQETVKEIFGKEPSKGVNPDE 364
Query: 1011 AVAVGASVQAGVL 1023
AVA+GA++Q GVL
Sbjct: 365 AVAIGAAIQGGVL 377
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein; Provisional.
Length = 657
Score = 645 bits (1664), Expect = 0.0
Identities = 319/565 (56%), Positives = 432/565 (76%), Gaps = 10/565 (1%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTT SCVA ++ K +V+ENSEG RTTPSVV + ++ VGL AKRQAITNP +T YA+
Sbjct: 35 GTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQSTFYAV 93
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKD--QYCAPPQISAEILKKMKSTA 768
KRLIGR++ DE +QKDIK VPYKIV A NGDAWV+ + QY +P QI A +L+KMK TA
Sbjct: 94 KRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQY-SPSQIGAFVLEKMKETA 152
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E FL K+ AV+T PAYFND+QRQATKDAG IAGL V+R++NEPTAAALAYG+DK D
Sbjct: 153 ENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMDKTKDS 212
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
+I VYDLGGGTFDISV+EIA FEV +TNGDT LGGEDFD+ + ++++ EF+
Sbjct: 213 -LIAVYDLGGGTFDISVLEIAG----GVFEVKATNGDTHLGGEDFDLALSDYILEEFRKT 267
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
+G+DLS + +A+QR++EAAEKAK ELS+A +T++NLP+ITA+ +G +H+ + I+RSK E
Sbjct: 268 SGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEG 327
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
+ + LI +S+ PC+ + DA ++ +I++++LVGG TRMP V + V +FF+K+ + +NP
Sbjct: 328 ITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPFRGVNP 387
Query: 1009 DEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
DEAVA+GA+ GVL G VK ++LLDVTPL+LGIET+GGV T +I KNTTIPT+K+Q FS
Sbjct: 388 DEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKKSQTFS 447
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
TA DNQT V I QGER+ A+ N+ +G+FDL I PAPRGVPQIEV+FD+DANGI +VT
Sbjct: 448 TAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANGICHVT 507
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
AKDK TGK Q+I I ++GGLS+ +IE MI+D+E ++E D+ ELV+ +N A++ ++ +
Sbjct: 508 AKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAE 567
Query: 1189 KNLKDENTKITDEEKESIEKSISNL 1213
+ L E ++D EKE+++ ++ L
Sbjct: 568 RQLG-EWKYVSDAEKENVKTLVAEL 591
Score = 639 bits (1649), Expect = 0.0
Identities = 317/569 (55%), Positives = 429/569 (75%), Gaps = 14/569 (2%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+IG+DLGTT SCVA ++ K +V+ENSEG RTTPSVV + ++ VGL AKRQAITNP
Sbjct: 29 VIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKL-VGLAAKRQAITNPQ 87
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKD-KKLAPPQISAEILKK 123
+T YA+KRLIGR++ DE +Q +K VPYKIV A NGDAWV+ + K+ +P QI A +L+K
Sbjct: 88 STFYAVKRLIGRRFEDEHIQKDIKNVPYKIVRAGNGDAWVQDGNGKQYSPSQIGAFVLEK 147
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE FL K+ AV+T PAYFND+QRQATKDAG IAGL V+R++NEPTAAALAYG+D
Sbjct: 148 MKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMD 207
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K D +I VYDLGGGTFDISV+EIA FEV +TNGDT LGGEDFD+ + ++++
Sbjct: 208 KTKDS-LIAVYDLGGGTFDISVLEIAG----GVFEVKATNGDTHLGGEDFDLALSDYILE 262
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EF+ +G+DLS + +A+QR++EAAEKAK ELS+A +T++NLP+ITA+ +G +H+ + I+R
Sbjct: 263 EFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISR 322
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
SK E + + LI +S+ PC+ + DA ++ +I++++LVGG TRMP V + V +FF+K+
Sbjct: 323 SKFEGITQRLIERSIAPCKQCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQKDPF 382
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
+ +NPDEAVA+GA+ GVL G VK ++LLDVTPL+LGIET+GGV T +I KNTTIPT+K
Sbjct: 383 RGVNPDEAVALGAATLGGVLRGDVKGLVLLDVTPLSLGIETLGGVFTRMIPKNTTIPTKK 442
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+Q FSTA DNQT V I QGER+ A+ N+ +G+FDL I PAPRGVPQIEV+FD+DANG
Sbjct: 443 SQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTFDIDANG 502
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE---Q 540
I +VTAKDK TGK Q+I I ++GGLS+ +IE MI+D+E ++E D+ ELV+ +N Q
Sbjct: 503 ICHVTAKDKATGKTQNITITANGGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQ 562
Query: 541 IIILEEKFCSFVLETKKETDYDEDKIRKL 569
+ E + E K +D +++ ++ L
Sbjct: 563 LTTAERQLG----EWKYVSDAEKENVKTL 587
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 607 bits (1568), Expect = 0.0
Identities = 236/382 (61%), Positives = 296/382 (77%), Gaps = 10/382 (2%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAV+ G+P VI N+EG RTTPSVV +T+ +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK--DKKLAPPQISAEIL 121
NT+++IKR +GRK+ + + + VPYK+V + G+ VE+ K P +ISA IL
Sbjct: 63 ENTIFSIKRFMGRKFDEVEEE---RKVPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMIL 119
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+K+K AE +L EK+ +AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG
Sbjct: 120 QKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 179
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
LDKK + I+VYDLGGGTFD+S++EI G+ FEVL+TNGDT LGG+DFD RII+ L
Sbjct: 180 LDKK-GNEKILVYDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGDDFDQRIIDWL 234
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
+ EFK E G+DL D +A+QRLKEAAEKAKIELS+ +T+INLP+ITAD GPKHL + +
Sbjct: 235 VEEFKKEEGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTL 294
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE 361
TR+K E L EDL+ ++++P + AL DAK+ S I E+ILVGG TR+P VQ++V E F KE
Sbjct: 295 TRAKFEELTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKE 354
Query: 362 VKKDINPDEAVAVGASVQAGVL 383
K +NPDE VA+GA++Q GVL
Sbjct: 355 PNKGVNPDEVVAIGAAIQGGVL 376
Score = 587 bits (1516), Expect = 0.0
Identities = 228/375 (60%), Positives = 289/375 (77%), Gaps = 10/375 (2%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV+ G+P VI N+EG RTTPSVV +T+ +VG PAKRQA+TNP NT+++I
Sbjct: 10 GTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPENTIFSI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVK--DQYCAPPQISAEILKKMKSTA 768
KR +GRK+ + ++ VPYK+V + G+ VE+ + P +ISA IL+K+K A
Sbjct: 70 KRFMGRKFDEVEEERK---VPYKVVVDEGGNYKVEIDSNGKDYTPQEISAMILQKLKEDA 126
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E +L EK+ +AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK +
Sbjct: 127 EAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-GN 185
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
I+VYDLGGGTFD+S++EI G+ FEVL+TNGDT LGG+DFD RII+ L+ EFK E
Sbjct: 186 EKILVYDLGGGTFDVSILEI----GDGVFEVLATNGDTHLGGDDFDQRIIDWLVEEFKKE 241
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DL D +A+QRLKEAAEKAKIELS+ +T+INLP+ITAD GPKHL + +TR+K E
Sbjct: 242 EGIDLRKDKMALQRLKEAAEKAKIELSSVTETEINLPFITADATGPKHLEMTLTRAKFEE 301
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L EDL+ ++++P + AL DAK+ S I E+ILVGG TR+P VQ++V E F KE K +NP
Sbjct: 302 LTEDLVERTIEPVKQALKDAKLSPSDIDEVILVGGSTRIPAVQELVKELFGKEPNKGVNP 361
Query: 1009 DEAVAVGASVQAGVL 1023
DE VA+GA++Q GVL
Sbjct: 362 DEVVAIGAAIQGGVL 376
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 603 bits (1558), Expect = 0.0
Identities = 246/621 (39%), Positives = 387/621 (62%), Gaps = 37/621 (5%)
Query: 624 QISETGVLFNPDIHE---AIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSV 680
QISE G + H+ A+GI GTTNS VA + +G+ +V+ + +G PSV
Sbjct: 5 QISEPGQ--SAAPHQRRLAVGI------DLGTTNSLVATVRSGQAEVLPDEQGRVLLPSV 56
Query: 681 VGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNG 740
V Y ED I VG A+ A +P NT+ ++KR +GR D +Q+ +PY+ VA++NG
Sbjct: 57 VRYLEDG-IEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQQRYPHLPYQFVASENG 113
Query: 741 DAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGK 800
+ +P ++SAEILK ++ AE L +++ AVITVPAYF+D+QRQATKDA +
Sbjct: 114 MPLIRTAQGLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173
Query: 801 IAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIAN-VDGETQFEV 859
+AGL VLR++NEPTAAA+AYGLD + +I VYDLGGGTFDIS++ ++ V FEV
Sbjct: 174 LAGLNVLRLLNEPTAAAIAYGLDSG-QEGVIAVYDLGGGTFDISILRLSKGV-----FEV 227
Query: 860 LSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ 919
L+T GD+ LGG+DFD + + ++ + + +D + L +AA AK LS+A+
Sbjct: 228 LATGGDSALGGDDFDHLLADWILEQAGLSPRLDPE----DQRLLLDAARAAKEALSDADS 283
Query: 920 TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEII 979
++++ A G +ITR + +L+ L+ ++L C AL DA ++ ++ E++
Sbjct: 284 VEVSV----ALWQG------EITREQFNALIAPLVKRTLLACRRALRDAGVEADEVKEVV 333
Query: 980 LVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG--VVKDVLLLDVTP 1037
+VGG TR+PLV++ V EFF + I+PD+ VA+GA++QA +L+G D+LLLDV P
Sbjct: 334 MVGGSTRVPLVREAVGEFFGRTPLTSIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIP 393
Query: 1038 LTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGK 1097
L+LG+ETMGG++ +I +NTTIP + Q F+T +D QT++ IH +QGER+ + +SL +
Sbjct: 394 LSLGLETMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLAR 453
Query: 1098 FDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMI 1157
F+L I P G +I V+F +DA+G+L+VTA +K TG E SI +K S GL++ EI M+
Sbjct: 454 FELRGIPPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARML 513
Query: 1158 KDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISNLELLI 1217
KD+ ++E D + L + K EA+ + ++ L + ++ E+ +I+ +++ L +
Sbjct: 514 KDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAMAALREVA 573
Query: 1218 KGDDIELIKKGNEDLLKISEN 1238
+GDD + I+ + L K ++
Sbjct: 574 QGDDADAIEAAIKALDKATQE 594
Score = 584 bits (1508), Expect = 0.0
Identities = 228/532 (42%), Positives = 345/532 (64%), Gaps = 26/532 (4%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
+GIDLGTTNS VA + +G+ +V+ + +G PSVV Y ED I VG A+ A +P N
Sbjct: 22 VGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDG-IEVGYEARANAAQDPKN 80
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMK 125
T+ ++KR +GR D +Q +PY+ VA++NG + +P ++SAEILK ++
Sbjct: 81 TISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQGLKSPVEVSAEILKALR 138
Query: 126 STAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 185
AE L +++ AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAA+AYGLD
Sbjct: 139 QRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDSG 198
Query: 186 PDDRIIVVYDLGGGTFDISVIEIAN-VDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
+ +I VYDLGGGTFDIS++ ++ V FEVL+T GD+ LGG+DFD + + ++ +
Sbjct: 199 -QEGVIAVYDLGGGTFDISILRLSKGV-----FEVLATGGDSALGGDDFDHLLADWILEQ 252
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
+ +D + L +AA AK LS+A+ ++++ A G +ITR
Sbjct: 253 AGLSPRLDPE----DQRLLLDAARAAKEALSDADSVEVSV----ALWQG------EITRE 298
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
+ +L+ L+ ++L C AL DA ++ ++ E+++VGG TR+PLV++ V EFF +
Sbjct: 299 QFNALIAPLVKRTLLACRRALRDAGVEADEVKEVVMVGGSTRVPLVREAVGEFFGRTPLT 358
Query: 365 DINPDEAVAVGASVQAGVLSG--VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTR 422
I+PD+ VA+GA++QA +L+G D+LLLDV PL+LG+ETMGG++ +I +NTTIP
Sbjct: 359 SIDPDKVVAIGAAIQADILAGNKPDSDMLLLDVIPLSLGLETMGGLVEKIIPRNTTIPVA 418
Query: 423 KTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482
+ Q F+T +D QT++ IH +QGER+ + +SL +F+L I P G +I V+F +DA+
Sbjct: 419 RAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDAD 478
Query: 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELV 534
G+L+VTA +K TG E SI +K S GL++ EI M+KD+ ++E D + L
Sbjct: 479 GLLSVTAMEKSTGVEASIQVKPSYGLTDDEIARMLKDSMSHAEEDMQARALA 530
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 596 bits (1539), Expect = 0.0
Identities = 289/584 (49%), Positives = 388/584 (66%), Gaps = 27/584 (4%)
Query: 644 PTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 703
P G GTT SCV V N ++I N +G RTTPS V +T+ R+I G AK Q NP
Sbjct: 5 PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVARNP 63
Query: 704 NNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCA------PPQIS 757
NT++ KRLIGRK+ D +VQ D+K P+K+ + +EV Y P +IS
Sbjct: 64 ENTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEV--TYQGEKKTFHPEEIS 121
Query: 758 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 817
+ +L+KMK AE +L ++++ AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA
Sbjct: 122 SMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAA 181
Query: 818 LAYGLDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 876
+AYGLDKK D ++ ++++DLGGGTFD+S++ I DG FEV +T GDT LGGEDFD R
Sbjct: 182 IAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIE--DG--IFEVKATAGDTHLGGEDFDNR 237
Query: 877 IINHLIYEFKIEN-GVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPK 935
++ + +FK +N G DLS + A++RL+ E+AK LS++ Q I + + +
Sbjct: 238 LVEFCVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY-- 295
Query: 936 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 995
NV I+R++ E L D +L+P E L DA +DK + E++LVGG TR+P VQ ++
Sbjct: 296 --NVTISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIK 353
Query: 996 EFFE-KEVKKDINPDEAVAVGASVQAGVLSG----VVKDVLLLDVTPLTLGIETMGGVMT 1050
+FF KE K INPDEAVA GA+VQA +L+G V+D+LLLDVTPL+LG+ET GGVMT
Sbjct: 354 DFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMT 413
Query: 1051 PLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGV 1110
LIE+NTTIPT+K+Q+F+T DNQ V I +GER N LGKF L+ I PAPRGV
Sbjct: 414 KLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGV 473
Query: 1111 PQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKK 1169
PQIEV+FD+DANGILNV+A+DK TGK I I + G LS+ +I+ M+ +AE D+
Sbjct: 474 PQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEA 533
Query: 1170 FEELVKCKNEADSTISIVKKNLKDEN--TKITDEEKESIEKSIS 1211
E V+ KN ++ +K L+DE K++D +K +IEK+I
Sbjct: 534 NRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAID 577
Score = 590 bits (1523), Expect = 0.0
Identities = 292/611 (47%), Positives = 397/611 (64%), Gaps = 27/611 (4%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGTT SCV V N ++I N +G RTTPS V +T+ R+I G AK Q NP N
Sbjct: 7 IGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVARNPEN 65
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAEIL 121
T++ KRLIGRK+ D +VQ+ +K P+K+ + +EV + K P +IS+ +L
Sbjct: 66 TVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVL 125
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+KMK AE +L ++++ AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+AYG
Sbjct: 126 QKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 185
Query: 182 LDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 240
LDKK D ++ ++++DLGGGTFD+S++ I DG FEV +T GDT LGGEDFD R++
Sbjct: 186 LDKKGDGEKNVLIFDLGGGTFDVSLLTIE--DG--IFEVKATAGDTHLGGEDFDNRLVEF 241
Query: 241 LIYEFKIEN-GVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNV 299
+ +FK +N G DLS + A++RL+ E+AK LS++ Q I + + + NV
Sbjct: 242 CVQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDY----NV 297
Query: 300 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE 359
I+R++ E L D +L+P E L DA +DK + E++LVGG TR+P VQ ++ +FF
Sbjct: 298 TISRARFEELCGDYFRNTLQPVEKVLKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFN 357
Query: 360 -KEVKKDINPDEAVAVGASVQAGVLSG----VVKDVLLLDVTPLTLGIETMGGVMTPLIE 414
KE K INPDEAVA GA+VQA +L+G V+D+LLLDVTPL+LG+ET GGVMT LIE
Sbjct: 358 GKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLETAGGVMTKLIE 417
Query: 415 KNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIE 474
+NTTIPT+K+Q+F+T DNQ V I +GER N LGKF L+ I PAPRGVPQIE
Sbjct: 418 RNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIE 477
Query: 475 VSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKKFEEL 533
V+FD+DANGILNV+A+DK TGK I I + G LS+ +I+ M+ +AE D+ E
Sbjct: 478 VTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRER 537
Query: 534 VKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAK 593
V+ KN E +C + T ++ + K+ + IE I E + + ++ K
Sbjct: 538 VEAKNGL-----ENYCYSMKNTLQDEKV-KGKLSDSDKATIEKAIDEALEWLEKNQLAEK 591
Query: 594 NFDSNQTKESE 604
++ KE E
Sbjct: 592 EEFEHKQKEVE 602
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a separate
clade. The apparent function is to aid assembly of
iron-sulfur cluster proteins. Homologs from Buchnera and
Wolbachia are clearly in the same clade but are highly
derived and score lower than some examples of DnaK
[Protein fate, Protein folding and stabilization].
Length = 599
Score = 579 bits (1495), Expect = 0.0
Identities = 246/594 (41%), Positives = 372/594 (62%), Gaps = 20/594 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VA + +G P+V+ ++EG PSVV Y +D + VG A A +P NT+ ++
Sbjct: 7 GTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSV 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRL+GR D K ++PY+ V + P ++SAEILKK+K AE
Sbjct: 67 KRLMGRSIED---IKTFSILPYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKLKQRAEE 123
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
L + AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAA+AYGLDK + I
Sbjct: 124 SLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDKA-SEGI 182
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
VYDLGGGTFD+S++++ G FEVL+T GD+ LGG+DFD + ++ + I
Sbjct: 183 YAVYDLGGGTFDVSILKL--TKG--VFEVLATGGDSALGGDDFDHALAKWILKQLGISAD 238
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
++ L +Q AA AK L++AE +++ K K+TR + E+L+
Sbjct: 239 LNPEDQRLLLQ----AARAAKEALTDAESVEVDF------TLDGKDFKGKLTRDEFEALI 288
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
+ L+ K+L C AL DA + +I ++LVGG TRMPLV++ V+E F +E DI+PD+
Sbjct: 289 QPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLTDIDPDQ 348
Query: 1011 AVAVGASVQAGVLSG--VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFS 1068
VA+GA++QA +L+G + D+LLLDVTPL+LGIETMGG++ +I +NT IP + Q F+
Sbjct: 349 VVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFT 408
Query: 1069 TAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVT 1128
T +D QT++ IH +QGER+ +SL +F+L I P G +I V+F +DA+G+L V+
Sbjct: 409 TYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVS 468
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
A+++ TG EQSI +K S GLS+ EIE M+KD+ ++E D L + K EA+ + ++
Sbjct: 469 AQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQ 528
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L + ++++E+ +I+ ++ L+ ++GDD + IK E L + ++N +
Sbjct: 529 AALAADGDLLSEDERAAIDAAMEALQKALQGDDADAIKAAIEALEEATDNFAAR 582
Score = 558 bits (1440), Expect = 0.0
Identities = 240/543 (44%), Positives = 346/543 (63%), Gaps = 20/543 (3%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+GIDLGTTNS VA + +G P+V+ ++EG PSVV Y +D + VG A A +P
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
NT+ ++KRL+GR D ++L PY+ V + + P ++SAEILKK+
Sbjct: 61 NTISSVKRLMGRSIEDIKTFSIL---PYRFVDGPGEMVRLRTVQGTVTPVEVSAEILKKL 117
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K AE L + AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAA+AYGLDK
Sbjct: 118 KQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYGLDK 177
Query: 185 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
+ I VYDLGGGTFD+S++++ G FEVL+T GD+ LGG+DFD + ++ +
Sbjct: 178 A-SEGIYAVYDLGGGTFDVSILKL--TKG--VFEVLATGGDSALGGDDFDHALAKWILKQ 232
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
I ++ L +Q AA AK L++AE +++ K K+TR
Sbjct: 233 LGISADLNPEDQRLLLQ----AARAAKEALTDAESVEVDF------TLDGKDFKGKLTRD 282
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
+ E+L++ L+ K+L C AL DA + +I ++LVGG TRMPLV++ V+E F +E
Sbjct: 283 EFEALIQPLVQKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELFGQEPLT 342
Query: 365 DINPDEAVAVGASVQAGVLSG--VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTR 422
DI+PD+ VA+GA++QA +L+G + D+LLLDVTPL+LGIETMGG++ +I +NT IP
Sbjct: 343 DIDPDQVVALGAAIQADLLAGNRIGNDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVA 402
Query: 423 KTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDAN 482
+ Q F+T +D QT++ IH +QGER+ +SL +F+L I P G +I V+F +DA+
Sbjct: 403 RAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDAD 462
Query: 483 GILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQII 542
G+L V+A+++ TG EQSI +K S GLS+ EIE M+KD+ ++E D L + K E
Sbjct: 463 GLLTVSAQEQSTGVEQSIQVKPSYGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAER 522
Query: 543 ILE 545
ILE
Sbjct: 523 ILE 525
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 483 bits (1244), Expect = e-160
Identities = 213/380 (56%), Positives = 283/380 (74%), Gaps = 9/380 (2%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
IIGIDLGTTNSCVAV++ P +IEN+EG RTTPS+V +T+ I+VG AKRQ +P
Sbjct: 3 TIIGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKT-GILVGEAAKRQEALHP 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NT +A KRLIGR++ D VQ +K+ YKIV NGDAW+ KK +P QI++ +LKK
Sbjct: 62 ENTFFATKRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKK 121
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K TAE +L +++++AVITVPAYFNDSQRQATKDAG +AGL+VLRIINEPTAAALAYG+D
Sbjct: 122 LKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGID 181
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K+ +++ I VYDLGGGTFDIS++ I + FEV +TNGDT LGGEDFD I+ ++I
Sbjct: 182 KRKENKNIAVYDLGGGTFDISILNIED----GVFEVKATNGDTMLGGEDFDNAIVQYIIK 237
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK + +DL+ + A+QR+KEAAEKAKIELS++E++ I LPY+ +GPKHL + ITR
Sbjct: 238 EFKRKYKIDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYL----DGPKHLRITITR 293
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+ E L + + +++ PC+ L DA + K I E+ILVGG TRMP +Q +V E F K+
Sbjct: 294 REFEQLRKSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPS 353
Query: 364 KDINPDEAVAVGASVQAGVL 383
K +NPDEAVA+GA++Q +L
Sbjct: 354 KSVNPDEAVALGAAIQGSIL 373
Score = 469 bits (1209), Expect = e-155
Identities = 205/373 (54%), Positives = 277/373 (74%), Gaps = 9/373 (2%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAV++ P +IEN+EG RTTPS+V +T+ I+VG AKRQ +P NT +A
Sbjct: 10 GTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKT-GILVGEAAKRQEALHPENTFFAT 68
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ D VQ+ +K+ YKIV NGDAW+ + +P QI++ +LKK+K TAE
Sbjct: 69 KRLIGRQFKDVEVQRKMKVPYYKIVEGRNGDAWIYTNGKKYSPSQIASFVLKKLKKTAEA 128
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L +++++AVITVPAYFNDSQRQATKDAG +AGL+VLRIINEPTAAALAYG+DK+ +++
Sbjct: 129 YLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGIDKRKENKN 188
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS++ I + FEV +TNGDT LGGEDFD I+ ++I EFK +
Sbjct: 189 IAVYDLGGGTFDISILNIED----GVFEVKATNGDTMLGGEDFDNAIVQYIIKEFKRKYK 244
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL+ + A+QR+KEAAEKAKIELS++E++ I LPY+ +GPKHL + ITR + E L
Sbjct: 245 IDLTRNKKAIQRIKEAAEKAKIELSSSEESVIELPYL----DGPKHLRITITRREFEQLR 300
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
+ + +++ PC+ L DA + K I E+ILVGG TRMP +Q +V E F K+ K +NPDE
Sbjct: 301 KSICKRTIYPCKQCLKDAGLRKKDIDEVILVGGMTRMPYIQNVVQEIFGKKPSKSVNPDE 360
Query: 1011 AVAVGASVQAGVL 1023
AVA+GA++Q +L
Sbjct: 361 AVALGAAIQGSIL 373
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 474 bits (1223), Expect = e-157
Identities = 191/378 (50%), Positives = 260/378 (68%), Gaps = 11/378 (2%)
Query: 6 IGIDLGTTNSCVAVLNN-GKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
IGIDLGTTNS VA ++N GKP++I N EG RTTPSVV + D ++VG AKRQA+ NP
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
NT+ KRLIGRK+ D +VQ+ K V A VE+ KK +P ++SA ILKK+
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSA-KKVIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKL 119
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K AE +L E + +AVITVPAYFND+QR+ATK+A +IAGL V+R+INEPTAAALAYGLDK
Sbjct: 120 KEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDK 179
Query: 185 K-PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K R I+V+DLGGGTFD+S++E+ FEVL+T GD LGG+DFD + ++L
Sbjct: 180 KDEKGRTILVFDLGGGTFDVSLVEV----EGGVFEVLATGGDNHLGGDDFDNALADYLAE 235
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
+FK + G+DL D A++RLKEAAEKAKI LS++E+ I LP + L V++TR
Sbjct: 236 KFKEKGGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLG----SGGDLEVELTR 291
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+ E L+ L+ +++ E L DA + I ++LVGG +R+PLV++++ E F K+
Sbjct: 292 EEFEELIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPL 351
Query: 364 KDINPDEAVAVGASVQAG 381
+ I+PDEAVA+GA++ A
Sbjct: 352 RSIDPDEAVALGAAIYAA 369
Score = 459 bits (1182), Expect = e-151
Identities = 184/373 (49%), Positives = 253/373 (67%), Gaps = 11/373 (2%)
Query: 651 GTTNSCVAVLNN-GKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYA 709
GTTNS VA ++N GKP++I N EG RTTPSVV + D ++VG AKRQA+ NP NT+
Sbjct: 6 GTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPENTVGD 65
Query: 710 IKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAE 769
KRLIGRK+ D +VQ K V A VE+ + +P ++SA ILKK+K AE
Sbjct: 66 FKRLIGRKFDDPLVQSAKK-VIGVDRGAPIIPVPVELGGKKYSPEEVSALILKKLKEDAE 124
Query: 770 TFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK-PDD 828
+L E + +AVITVPAYFND+QR+ATK+A +IAGL V+R+INEPTAAALAYGLDKK
Sbjct: 125 AYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYGLDKKDEKG 184
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
R I+V+DLGGGTFD+S++E+ FEVL+T GD LGG+DFD + ++L +FK +
Sbjct: 185 RTILVFDLGGGTFDVSLVEV----EGGVFEVLATGGDNHLGGDDFDNALADYLAEKFKEK 240
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+DL D A++RLKEAAEKAKI LS++E+ I LP + L V++TR + E
Sbjct: 241 GGIDLRLDPRALRRLKEAAEKAKIALSSSEEATITLPGLG----SGGDLEVELTREEFEE 296
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
L+ L+ +++ E L DA + I ++LVGG +R+PLV++++ E F K+ + I+P
Sbjct: 297 LIRPLLERTIDLVERVLADAGLKPEDIDAVLLVGGSSRIPLVRELLEELFGKKPLRSIDP 356
Query: 1009 DEAVAVGASVQAG 1021
DEAVA+GA++ A
Sbjct: 357 DEAVALGAAIYAA 369
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 454 bits (1171), Expect = e-149
Identities = 204/381 (53%), Positives = 269/381 (70%), Gaps = 13/381 (3%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+IGIDLGTT SCV V NG+ ++I N +G R TPS V +T+ R+I G AK QA +NP
Sbjct: 3 VIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTDGERLI-GDAAKNQATSNPE 61
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDA-WVEVKDKK--LAPPQISAEIL 121
NT++ +KRLIGRK+ D+ VQ +K++PYK+V D V+VK +K +P +ISA +L
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVL 121
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
KMK AE +L +K++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYG
Sbjct: 122 TKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYG 181
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
LDKK ++ I+V+DLGGGTFD+S++ I N FEVL+TNGDT LGGEDFD R++ H
Sbjct: 182 LDKKGGEKNILVFDLGGGTFDVSLLTIDN----GVFEVLATNGDTHLGGEDFDQRVMEHF 237
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
I FK ++G D+S D A+Q+L+ EKAK LS+ QT I + + ++ + +
Sbjct: 238 IKLFKKKHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGED----FSETL 293
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-K 360
TR+K E L DL K+LKP + L DA + KS I EI+LVGG TR+P VQ+++ EFF K
Sbjct: 294 TRAKFEELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGK 353
Query: 361 EVKKDINPDEAVAVGASVQAG 381
E + INPDEAVA GA+VQAG
Sbjct: 354 EPSRGINPDEAVAYGAAVQAG 374
Score = 444 bits (1145), Expect = e-146
Identities = 201/375 (53%), Positives = 264/375 (70%), Gaps = 13/375 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTT SCV V NG+ ++I N +G R TPS V +T+ R+I G AK QA +NP NT++ +
Sbjct: 9 GTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTDGERLI-GDAAKNQATSNPENTIFDV 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDA-WVEVKD--QYCAPPQISAEILKKMKST 767
KRLIGRK+ D+ VQKDIK++PYK+V D V+VK + +P +ISA +L KMK
Sbjct: 68 KRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVLTKMKEI 127
Query: 768 AETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPD 827
AE +L +K++ AV+TVPAYFND+QRQATKDAG IAGL V+RIINEPTAAA+AYGLDKK
Sbjct: 128 AEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYGLDKKGG 187
Query: 828 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 887
++ I+V+DLGGGTFD+S++ I N FEVL+TNGDT LGGEDFD R++ H I FK
Sbjct: 188 EKNILVFDLGGGTFDVSLLTIDN----GVFEVLATNGDTHLGGEDFDQRVMEHFIKLFKK 243
Query: 888 ENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLE 947
++G D+S D A+Q+L+ EKAK LS+ QT I + + ++ + +TR+K E
Sbjct: 244 KHGKDISKDKRALQKLRREVEKAKRALSSQHQTRIEIESLFDGED----FSETLTRAKFE 299
Query: 948 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKDI 1006
L DL K+LKP + L DA + KS I EI+LVGG TR+P VQ+++ EFF KE + I
Sbjct: 300 ELNMDLFKKTLKPVKKVLEDADLKKSDIDEIVLVGGSTRIPKVQQLLKEFFNGKEPSRGI 359
Query: 1007 NPDEAVAVGASVQAG 1021
NPDEAVA GA+VQAG
Sbjct: 360 NPDEAVAYGAAVQAG 374
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 443 bits (1142), Expect = e-145
Identities = 200/387 (51%), Positives = 265/387 (68%), Gaps = 20/387 (5%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q NP N
Sbjct: 2 IGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVAMNPTN 60
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEIL 121
T++ KRLIGRK++D +VQ+ +K P+K+V G + V+ K P +IS+ +L
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVVN-GGGKPPIIVEYKGETKTFYPEEISSMVL 119
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
KMK AE +L + + AVITVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+AYG
Sbjct: 120 TKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 179
Query: 182 LDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 240
LDKK +R ++++DLGGGTFD+S++ I + FEV +T GDT LGGEDFD R++NH
Sbjct: 180 LDKKGGGERNVLIFDLGGGTFDVSLLTIE----DGIFEVKATAGDTHLGGEDFDNRLVNH 235
Query: 241 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLP--YITADKNGPKHLN 298
+ EFK ++ D+SG+ A++RL+ A E+AK LS++ Q I + + D
Sbjct: 236 FVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGID------FY 289
Query: 299 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 358
ITR++ E L DL +L+P E L DAK+DKS+I +I+LVGG TR+P VQK++ +FF
Sbjct: 290 TSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQKLLQDFF 349
Query: 359 E-KEVKKDINPDEAVAVGASVQAGVLS 384
KE+ K INPDEAVA GA+VQA +LS
Sbjct: 350 NGKELNKSINPDEAVAYGAAVQAAILS 376
Score = 432 bits (1113), Expect = e-141
Identities = 199/394 (50%), Positives = 264/394 (67%), Gaps = 26/394 (6%)
Query: 639 AIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQ 698
AIGI GTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q
Sbjct: 1 AIGI------DLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQ 53
Query: 699 AITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVK----DQYCAPP 754
NP NT++ KRLIGRK++D +VQ D+K P+K+V G + V+ + P
Sbjct: 54 VAMNPTNTVFDAKRLIGRKFSDPVVQSDMKHWPFKVVN-GGGKPPIIVEYKGETKTFYPE 112
Query: 755 QISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPT 814
+IS+ +L KMK AE +L + + AVITVPAYFNDSQRQATKDAG IAGL VLRIINEPT
Sbjct: 113 EISSMVLTKMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPT 172
Query: 815 AAALAYGLDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDF 873
AAA+AYGLDKK +R ++++DLGGGTFD+S++ I + FEV +T GDT LGGEDF
Sbjct: 173 AAAIAYGLDKKGGGERNVLIFDLGGGTFDVSLLTIE----DGIFEVKATAGDTHLGGEDF 228
Query: 874 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLP--YITADK 931
D R++NH + EFK ++ D+SG+ A++RL+ A E+AK LS++ Q I + + D
Sbjct: 229 DNRLVNHFVQEFKRKHKKDISGNKRALRRLRTACERAKRTLSSSTQASIEIDSLFEGID- 287
Query: 932 NGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQ 991
ITR++ E L DL +L+P E L DAK+DKS+I +I+LVGG TR+P VQ
Sbjct: 288 -----FYTSITRARFEELCADLFRGTLEPVEKVLRDAKLDKSQIHDIVLVGGSTRIPKVQ 342
Query: 992 KMVSEFFE-KEVKKDINPDEAVAVGASVQAGVLS 1024
K++ +FF KE+ K INPDEAVA GA+VQA +LS
Sbjct: 343 KLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 395 bits (1017), Expect = e-127
Identities = 164/376 (43%), Positives = 232/376 (61%), Gaps = 23/376 (6%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
IGIDLGTTNS VA + +GK +++ + G PSVV Y D I VG A + AI++P
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYG-DGGISVGHDALKLAISDPK 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
NT+ ++KRL+G+ E ++ + + G + + P ++SAEILK +
Sbjct: 61 NTISSVKRLMGKSI--EDIKK-SFPYLPILEGKNGGIILFHTQQGTVTPVEVSAEILKAL 117
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K AE L +I+ AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAALAYGLDK
Sbjct: 118 KERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDK 177
Query: 185 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
K + I VYDLGGGTFD+S++++ G FEVL+T GD+ LGG+DFD + L+ +
Sbjct: 178 K-KEGIYAVYDLGGGTFDVSILKL--HKG--VFEVLATGGDSALGGDDFDQLLAELLLKK 232
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
+ +++ + L A KAK LS AE+ ++ + ITR
Sbjct: 233 YGLKSLISDE----DQAELLLIARKAKEALSGAEEVEVRG----------QDFKCTITRE 278
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
+ E L++ L+ K+L C+ AL DA + I +ILVGG TR+PLVQ+ VS+FF ++
Sbjct: 279 EFEKLIDPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLC 338
Query: 365 DINPDEAVAVGASVQA 380
DINPDE VA+GA++QA
Sbjct: 339 DINPDEVVAIGAALQA 354
Score = 383 bits (986), Expect = e-123
Identities = 161/370 (43%), Positives = 229/370 (61%), Gaps = 23/370 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VA + +GK +++ + G PSVV Y D I VG A + AI++P NT+ ++
Sbjct: 8 GTTNSLVASVLSGKVKILPDENGRVLLPSVVHYG-DGGISVGHDALKLAISDPKNTISSV 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRL+G+ E ++K +P + + G + P ++SAEILK +K AE
Sbjct: 67 KRLMGKSI--EDIKKSFPYLPI-LEGKNGGIILFHTQQGTVTPVEVSAEILKALKERAEK 123
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
L +I+ AVITVPAYF+D+QRQATKDA ++AGL VLR++NEPTAAALAYGLDKK + I
Sbjct: 124 SLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGLDKK-KEGI 182
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
VYDLGGGTFD+S++++ G FEVL+T GD+ LGG+DFD + L+ ++ +++
Sbjct: 183 YAVYDLGGGTFDVSILKL--HKG--VFEVLATGGDSALGGDDFDQLLAELLLKKYGLKSL 238
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+ L A KAK LS AE+ ++ + ITR + E L+
Sbjct: 239 ISDE----DQAELLLIARKAKEALSGAEEVEVRG----------QDFKCTITREEFEKLI 284
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
+ L+ K+L C+ AL DA + I +ILVGG TR+PLVQ+ VS+FF ++ DINPDE
Sbjct: 285 DPLVKKTLNICKQALRDAGLSVKDIKGVILVGGSTRIPLVQEAVSKFFGQKPLCDINPDE 344
Query: 1011 AVAVGASVQA 1020
VA+GA++QA
Sbjct: 345 VVAIGAALQA 354
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 373 bits (961), Expect = e-119
Identities = 158/378 (41%), Positives = 228/378 (60%), Gaps = 41/378 (10%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGTTNS VAV +GK ++I N+ G TPSVV ED I+VG A+ + IT+P+
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMK 125
T + KR +G TD+ + ++ ++S+ +L+ +K
Sbjct: 61 TAASFKRFMG---TDKKY---------------------RLGKREFRAEELSSLVLRSLK 96
Query: 126 STAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 185
AE +L E + +AVI+VPAYFND QR+ATK AG++AGL+V R+INEPTAAALAYGL K
Sbjct: 97 EDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDK 156
Query: 186 PDDRIIVVYDLGGGTFDISVIEIA-NVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
++ +V+DLGGGTFD+SV+E+ V EV ++ GD +LGGEDF +
Sbjct: 157 DEETKFLVFDLGGGTFDVSVLELFDGV-----MEVRASAGDNYLGGEDFTRALAEA---- 207
Query: 245 FKIENGVD-LSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
F ++G+D D + RL AAE+AK LS+ E+ ++++ + L +TR
Sbjct: 208 FLKKHGLDFEKLDPSELARLLRAAERAKRALSDQEEAEMSVRI------EGEELEYTLTR 261
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+ E + + L+ + +P E AL DA++ S I EIILVGG TRMP+V+K+VS F +
Sbjct: 262 EEFEEICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPL 321
Query: 364 KDINPDEAVAVGASVQAG 381
+NPDE VA+GA++QAG
Sbjct: 322 VHLNPDEVVALGAAIQAG 339
Score = 356 bits (916), Expect = e-113
Identities = 153/373 (41%), Positives = 222/373 (59%), Gaps = 41/373 (10%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNS VAV +GK ++I N+ G TPSVV ED I+VG A+ + IT+P+ T +
Sbjct: 6 GTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDLTAASF 65
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KR +G TD+ + + ++S+ +L+ +K AE
Sbjct: 66 KRFMG---TDKKY---------------------RLGKREFRAEELSSLVLRSLKEDAEA 101
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVI+VPAYFND QR+ATK AG++AGL+V R+INEPTAAALAYGL K ++
Sbjct: 102 YLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGLHDKDEETK 161
Query: 831 IVVYDLGGGTFDISVIEIA-NVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIEN 889
+V+DLGGGTFD+SV+E+ V EV ++ GD +LGGEDF + F ++
Sbjct: 162 FLVFDLGGGTFDVSVLELFDGV-----MEVRASAGDNYLGGEDFTRALAEA----FLKKH 212
Query: 890 GVD-LSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
G+D D + RL AAE+AK LS+ E+ ++++ + L +TR + E
Sbjct: 213 GLDFEKLDPSELARLLRAAERAKRALSDQEEAEMSVRI------EGEELEYTLTREEFEE 266
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
+ + L+ + +P E AL DA++ S I EIILVGG TRMP+V+K+VS F + +NP
Sbjct: 267 ICQPLLERLRQPIERALRDARLKPSDIDEIILVGGATRMPVVRKLVSRLFGRFPLVHLNP 326
Query: 1009 DEAVAVGASVQAG 1021
DE VA+GA++QAG
Sbjct: 327 DEVVALGAAIQAG 339
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 341 bits (875), Expect = e-104
Identities = 202/601 (33%), Positives = 323/601 (53%), Gaps = 46/601 (7%)
Query: 633 NPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVG 692
D + I G GTTNS +A+ N K +VI++ + P+ + +T +N I
Sbjct: 11 QADFKQERQI--AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTI-- 66
Query: 693 LPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYK-IVAADNGDAWVEVKDQYC 751
N L +IKRL G K EI+ K + ++ + + ++
Sbjct: 67 ---------GNNKGLRSIKRLFG-KTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQL 116
Query: 752 APPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIIN 811
P+I+AEI +K+ AE L I KAVITVPA+FND+ R A KIAG EVLR+I
Sbjct: 117 RIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIA 176
Query: 812 EPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE 871
EPTAAA AYGL+K +V YDLGGGTFD+S++ I E F+V++TNGD LGG
Sbjct: 177 EPTAAAYAYGLNKNQKGCYLV-YDLGGGTFDVSILNIQ----EGIFQVIATNGDNMLGGN 231
Query: 872 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADK 931
D D+ I +L +F + N +D + A+KAK L+ + + +
Sbjct: 232 DIDVVITQYLCNKFDLPNSIDTL----------QLAKKAKETLTYKDSFNND-------- 273
Query: 932 NGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQ 991
N+ I + LE L+ L+ +++ + L A I +ILVGG TR+PL++
Sbjct: 274 ------NISINKQTLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIK 325
Query: 992 KMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTP 1051
+ + F+ ++ DI+PD+AV GA++QA L + LL+DV PL+LG+E GG++
Sbjct: 326 DELYKAFKVDILSDIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEK 385
Query: 1052 LIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVP 1111
+I +NT IP + F+T DNQT + H LQGER+ A+ +SL +F+L + P G
Sbjct: 386 IIMRNTPIPISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSI 445
Query: 1112 QIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFE 1171
+ EV+F +DA+GIL+V+A +K + +I +K + G+ + EI+ M+++A N+++D
Sbjct: 446 RAEVTFAIDADGILSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKIDYTTR 505
Query: 1172 ELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNED 1231
L + EA++ I +++ + + T +++ E I + N++ + DI LI ++
Sbjct: 506 LLQEAVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHARDIILINNSIKE 565
Query: 1232 L 1232
Sbjct: 566 F 566
Score = 337 bits (865), Expect = e-102
Identities = 193/523 (36%), Positives = 298/523 (56%), Gaps = 44/523 (8%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
+GID GTTNS +A+ N K +VI++ + P+ + +T +N I N
Sbjct: 22 VGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTI-----------GNNK 70
Query: 66 TLYAIKRLIGRKYTDEIVQT-VLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKM 124
L +IKRL G K EI+ T L + + ++ + + +K+L P+I+AEI +
Sbjct: 71 GLRSIKRLFG-KTLKEILNTPALFSLVKDYLDVNSSELKLNFANKQLRIPEIAAEIFIYL 129
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 184
K+ AE L I KAVITVPA+FND+ R A KIAG EVLR+I EPTAAA AYGL+K
Sbjct: 130 KNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAYAYGLNK 189
Query: 185 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 244
+V YDLGGGTFD+S++ I E F+V++TNGD LGG D D+ I +L +
Sbjct: 190 NQKGCYLV-YDLGGGTFDVSILNIQ----EGIFQVIATNGDNMLGGNDIDVVITQYLCNK 244
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
F + N +D + A+KAK L+ + + + N+ I +
Sbjct: 245 FDLPNSIDTL----------QLAKKAKETLTYKDSFNND--------------NISINKQ 280
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK 364
LE L+ L+ +++ + L A I +ILVGG TR+PL++ + + F+ ++
Sbjct: 281 TLEQLILPLVERTINIAQECLEQAG--NPNIDGVILVGGATRIPLIKDELYKAFKVDILS 338
Query: 365 DINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKT 424
DI+PD+AV GA++QA L + LL+DV PL+LG+E GG++ +I +NT IP
Sbjct: 339 DIDPDKAVVWGAALQAENLIAPHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPISVV 398
Query: 425 QVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGI 484
+ F+T DNQT + H LQGER+ A+ +SL +F+L + P G + EV+F +DA+GI
Sbjct: 399 KEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGI 458
Query: 485 LNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELD 527
L+V+A +K + +I +K + G+ + EI+ M+++A N+++D
Sbjct: 459 LSVSAYEKISNTSHAIEVKPNHGIDKTEIDIMLENAYKNAKID 501
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 322 bits (827), Expect = 1e-99
Identities = 153/389 (39%), Positives = 224/389 (57%), Gaps = 20/389 (5%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
+GID G NS VAV G V+ N R TPS+V + E R+I G AK QAI+N N
Sbjct: 3 VGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLI-GEAAKNQAISNFKN 61
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAEIL 121
T+ KRLIGRK+ D VQ LK +P+K+V +G ++V ++K +P Q+ A +L
Sbjct: 62 TVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAMLL 121
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
K+K AE L K+ VI+VP+YF D+QR+A DA +IAGL LR++NE TA ALAYG
Sbjct: 122 TKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYG 181
Query: 182 LDKK--PDD---RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236
+ K P++ R + D+G + +S++ + + +VLST D LGG DFD
Sbjct: 182 IYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFN----KGKLKVLSTAFDRNLGGRDFDEA 237
Query: 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADKNGPK 295
+ H EFK + +D+ + A RL A EK K LS N E +N+ + DK+
Sbjct: 238 LFEHFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTE-APLNIECLMEDKD--- 293
Query: 296 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 355
++ KI R + E L L+ + +P E AL +A + K I + +VGG TR+P V+++++
Sbjct: 294 -VSGKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIA 352
Query: 356 EFFEKEVKKDINPDEAVAVGASVQAGVLS 384
+ F KE+ +N DEAVA G ++Q +LS
Sbjct: 353 KVFGKELSTTLNADEAVARGCALQCAMLS 381
Score = 313 bits (805), Expect = 1e-96
Identities = 150/386 (38%), Positives = 219/386 (56%), Gaps = 24/386 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G NS VAV G V+ N R TPS+V + E R+I G AK QAI+N NT+
Sbjct: 8 GNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLI-GEAAKNQAISNFKNTVRNF 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCA------PPQISAEILKKM 764
KRLIGRK+ D VQK++K +P+K+V +G ++V Y P Q+ A +L K+
Sbjct: 67 KRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKV--NYLGEEKVFSPEQVLAMLLTKL 124
Query: 765 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 824
K AE L K+ VI+VP+YF D+QR+A DA +IAGL LR++NE TA ALAYG+ K
Sbjct: 125 KEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAYGIYK 184
Query: 825 K--PDD---RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 879
P++ R + D+G + +S++ + + +VLST D LGG DFD +
Sbjct: 185 TDLPEEEKPRNVAFVDIGHSSTQVSIVAFN----KGKLKVLSTAFDRNLGGRDFDEALFE 240
Query: 880 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADKNGPKHLN 938
H EFK + +D+ + A RL A EK K LS N E +N+ + DK+ ++
Sbjct: 241 HFAKEFKEKYKIDVLSNPKARLRLLAACEKLKKVLSANTE-APLNIECLMEDKD----VS 295
Query: 939 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 998
KI R + E L L+ + +P E AL +A + K I + +VGG TR+P V++++++ F
Sbjct: 296 GKIKREEFEELCAPLLERVEEPLEKALAEAGLTKEDIHSVEIVGGSTRIPAVKELIAKVF 355
Query: 999 EKEVKKDINPDEAVAVGASVQAGVLS 1024
KE+ +N DEAVA G ++Q +LS
Sbjct: 356 GKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 298 bits (765), Expect = 1e-90
Identities = 149/389 (38%), Positives = 224/389 (57%), Gaps = 13/389 (3%)
Query: 4 KIIGIDLGTTNSCVAVLN--NGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAIT 61
KIIGIDLGTT S V V G+ +I + G ++ PSVV +T ++VG A QA
Sbjct: 21 KIIGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFT-PGTVLVGYKAVEQAEH 79
Query: 62 NPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQIS 117
NP NT+Y KR IG+ +T E ++ +K+ A+ + K + P +I
Sbjct: 80 NPQNTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIG 139
Query: 118 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 177
+ ++ K++ AE +L + KAVI+VPA F++ QR AT A +AGLEVLR+INEPTAAA
Sbjct: 140 SRLILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAA 199
Query: 178 LAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
LAYGL KK D ++V DLGGGT D+S++ N G F + G+ LGG+DF+ R+
Sbjct: 200 LAYGLHKKQDVFNVLVVDLGGGTLDVSLL---NKQG-GMFLTRAMAGNNRLGGQDFNQRL 255
Query: 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHL 297
+ +L + + G + +QRL++A E AKI L+ T I+L +
Sbjct: 256 LQYLYQKIYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVK 314
Query: 298 -NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSE 356
++TR + E+L EDL K L P E L + +DK ++ EI+LVGG TR+P +++++
Sbjct: 315 FEYELTRDEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGR 374
Query: 357 FFEKEVKKDINPDEAVAVGASVQAGVLSG 385
FF K+ ++P+ AV G ++QAG++ G
Sbjct: 375 FFGKDPNTSVDPELAVVTGVAIQAGIIGG 403
Score = 283 bits (725), Expect = 4e-85
Identities = 143/382 (37%), Positives = 218/382 (57%), Gaps = 13/382 (3%)
Query: 651 GTTNSCVAVLN--NGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLY 708
GTT S V V G+ +I + G ++ PSVV +T ++VG A QA NP NT+Y
Sbjct: 28 GTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFT-PGTVLVGYKAVEQAEHNPQNTIY 86
Query: 709 AIKRLIGRKYTDEIVQKDIKMVPYK-IVAADNGDAWVEVKDQ---YCAPPQISAEILKKM 764
KR IG+ +T E ++ + +K + + NG + V P +I + ++ K+
Sbjct: 87 DAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSRLILKL 146
Query: 765 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDK 824
+ AE +L + KAVI+VPA F++ QR AT A +AGLEVLR+INEPTAAALAYGL K
Sbjct: 147 RKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALAYGLHK 206
Query: 825 KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYE 884
K D ++V DLGGGT D+S++ N G F + G+ LGG+DF+ R++ +L +
Sbjct: 207 KQDVFNVLVVDLGGGTLDVSLL---NKQG-GMFLTRAMAGNNRLGGQDFNQRLLQYLYQK 262
Query: 885 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHL-NVKITR 943
+ G + +QRL++A E AKI L+ T I+L + ++TR
Sbjct: 263 IYEKYGKVPD-NKEDIQRLRQAVEAAKINLTLHPSTTISLNLTLLSEGESIVKFEYELTR 321
Query: 944 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 1003
+ E+L EDL K L P E L + +DK ++ EI+LVGG TR+P +++++ FF K+
Sbjct: 322 DEFETLNEDLFQKILLPIEAVLAEGHLDKEEVDEIVLVGGSTRIPRIRQVIGRFFGKDPN 381
Query: 1004 KDINPDEAVAVGASVQAGVLSG 1025
++P+ AV G ++QAG++ G
Sbjct: 382 TSVDPELAVVTGVAIQAGIIGG 403
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 265 bits (679), Expect = 3e-79
Identities = 141/384 (36%), Positives = 218/384 (56%), Gaps = 19/384 (4%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IG+ G T++C+AV +G+ V+ N G R TP+VV +T D +IVGL AK+ I N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFT-DTEVIVGLAAKQGRIRNAAN 61
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWV---EVKDKKLAPPQISAEILK 122
T+ K+++GR Y+D Q KI+ D + E K K ++P +++ I K
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 123 KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 182
KMK A++ L + VITVP YF++ Q+ A ++A + AG VLRII+EP+AAALAYG+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 183 --DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 240
D ++VY LGG + D++++ + G + VL+T+ D LGGE F + +
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRV--NSG--MYRVLATSTDDNLGGESFTETLSQY 237
Query: 241 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS--NAEQTDINLPYITADKNGPKHLN 298
L EFK + D+ G++ AM +L AAE AK LS + + Y D
Sbjct: 238 LANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQC----- 292
Query: 299 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 358
++R++ ESL L K L+P E L A + K+ I++++L GG +R+P +Q+++ + F
Sbjct: 293 -SVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLF 351
Query: 359 -EKEVKKDINPDEAVAVGASVQAG 381
EV I+PDE +A+GA+ QAG
Sbjct: 352 PSVEVLNSISPDEVIAIGAAKQAG 375
Score = 261 bits (670), Expect = 5e-78
Identities = 140/384 (36%), Positives = 218/384 (56%), Gaps = 19/384 (4%)
Query: 646 FGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 705
G G T++C+AV +G+ V+ N G R TP+VV +T D +IVGL AK+ I N N
Sbjct: 3 IGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFT-DTEVIVGLAAKQGRIRNAAN 61
Query: 706 TLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWV---EVKDQYCAPPQISAEILK 762
T+ K+++GR Y+D QK+ KI+ D + E K ++ +P +++ I K
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 763 KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 822
KMK A++ L + VITVP YF++ Q+ A ++A + AG VLRII+EP+AAALAYG+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 823 --DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880
D ++VY LGG + D++++ + G + VL+T+ D LGGE F + +
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRV--NSG--MYRVLATSTDDNLGGESFTETLSQY 237
Query: 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS--NAEQTDINLPYITADKNGPKHLN 938
L EFK + D+ G++ AM +L AAE AK LS + + Y D
Sbjct: 238 LANEFKRKWKQDVRGNARAMMKLNNAAEVAKQILSTLPSANCFVESLYEGIDFQC----- 292
Query: 939 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 998
++R++ ESL L K L+P E L A + K+ I++++L GG +R+P +Q+++ + F
Sbjct: 293 -SVSRARFESLCSSLFPKCLEPIEKVLEQANLTKTDINKVVLCGGSSRIPKLQQLIKDLF 351
Query: 999 -EKEVKKDINPDEAVAVGASVQAG 1021
EV I+PDE +A+GA+ QAG
Sbjct: 352 PSVEVLNSISPDEVIAIGAAKQAG 375
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 260 bits (666), Expect = 3e-77
Identities = 131/392 (33%), Positives = 205/392 (52%), Gaps = 22/392 (5%)
Query: 6 IGIDLGTTNSCVAVLNNGKP-QVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+GIDLG+ VA++ G P +++ N E R TPS V + R+ G A A P
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQ 59
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVP--YKIVAADNGDAWVEVKDKK-LAPPQISAEIL 121
+K L+G+ D V P Y +V G ++ D + + ++ A IL
Sbjct: 60 QVYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMIL 119
Query: 122 KKMKSTAETFLNE-KIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
K AE E ++ VITVP YF +QRQA DA ++AGL VL ++N+ TAAAL Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 181 GLDKKPDD---RIIVVYDLGGGTFDISVIEIANV------DGETQFEVLSTNGDTFLGGE 231
LD++ ++ + ++ YD+G G+ +V+E + V Q EVL D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 232 DFDMRIINHLIYEFKIENG--VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITA 289
+FD+R+ +HL EF+ ++ VD+ + AM +L + A +AK LS + +++ +
Sbjct: 240 EFDLRLADHLAKEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYD 299
Query: 290 DKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPL 349
D KITR++ E L DL +++ P + AL A + I + L+GG TR+P
Sbjct: 300 D----IDFKTKITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPK 355
Query: 350 VQKMVSEFF-EKEVKKDINPDEAVAVGASVQA 380
VQ+ +SE +K++ K +N DEA A+GA+ A
Sbjct: 356 VQEELSEAVGKKKLGKHLNADEAAAMGAAYYA 387
Score = 250 bits (642), Expect = 6e-74
Identities = 126/381 (33%), Positives = 197/381 (51%), Gaps = 22/381 (5%)
Query: 657 VAVLNNGKP-QVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIG 715
VA++ G P +++ N E R TPS V + R+ G A A P +K L+G
Sbjct: 12 VALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLF-GSDASSLAARFPQQVYLHLKDLLG 70
Query: 716 RKYTDEIVQKDIKMVP--YKIVAADNGDAWVEVKDQ-YCAPPQISAEILKKMKSTAETFL 772
+ D V P Y +V G ++ D + ++ A IL K AE
Sbjct: 71 KPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDGEEYSVEELVAMILNYAKKLAEEHA 130
Query: 773 NE-KIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD--- 828
E ++ VITVP YF +QRQA DA ++AGL VL ++N+ TAAAL Y LD++ ++
Sbjct: 131 KEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNYALDRRFENNKP 190
Query: 829 RIIVVYDLGGGTFDISVIEIANV------DGETQFEVLSTNGDTFLGGEDFDMRIINHLI 882
+ ++ YD+G G+ +V+E + V Q EVL D LGG +FD+R+ +HL
Sbjct: 191 QYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGREFDLRLADHLA 250
Query: 883 YEFKIENG--VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVK 940
EF+ ++ VD+ + AM +L + A +AK LS + +++ + D K
Sbjct: 251 KEFEEKHKAKVDVRTNPRAMAKLLKEANRAKEVLSANSEAPVSIESLYDD----IDFKTK 306
Query: 941 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-E 999
ITR++ E L DL +++ P + AL A + I + L+GG TR+P VQ+ +SE +
Sbjct: 307 ITRAEFEELCADLFERAVAPIKKALESAGLTLKDIDSVELIGGATRVPKVQEELSEAVGK 366
Query: 1000 KEVKKDINPDEAVAVGASVQA 1020
K++ K +N DEA A+GA+ A
Sbjct: 367 KKLGKHLNADEAAAMGAAYYA 387
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 242 bits (619), Expect = 6e-71
Identities = 134/391 (34%), Positives = 214/391 (54%), Gaps = 20/391 (5%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
++G D+G + +AV G + + N R TPSV+ + NR I G+ AK Q IT+ N
Sbjct: 2 VVGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTI-GVAAKNQQITHAN 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAEI 120
NT+ KR GR + D VQ + + Y +V NG V+V ++ + QI+A +
Sbjct: 61 NTVSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAML 120
Query: 121 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
L K+K TAE L + + VI+VP++F D++R++ DA +I GL LR++N+ TA AL Y
Sbjct: 121 LTKLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNY 180
Query: 181 GLDKK----PDD--RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 234
G+ K+ D+ RI+V D+G F +S + + +VL T D FLGG++FD
Sbjct: 181 GIYKQDLPSLDEKPRIVVFVDMGHSAFQVSACAF----NKGKLKVLGTAFDPFLGGKNFD 236
Query: 235 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEK-AKIELSNAEQTDINLPYITADKNG 293
+++ H EFK + +D A+ RL + EK K+ SN+ +N+ DK+
Sbjct: 237 EKLVEHFCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKD- 295
Query: 294 PKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353
++ K+ RS+ E L DL+ + P L + +S + +VGG TR+P V++
Sbjct: 296 ---VSGKMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKER 352
Query: 354 VSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384
+++FF K+V +N DEAVA G ++Q +LS
Sbjct: 353 IAKFFGKDVSTTLNADEAVARGCALQCAILS 383
Score = 238 bits (608), Expect = 2e-69
Identities = 133/385 (34%), Positives = 211/385 (54%), Gaps = 20/385 (5%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G + +AV G + + N R TPSV+ + NR I G+ AK Q IT+ NNT+
Sbjct: 8 GFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTI-GVAAKNQQITHANNTVSNF 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV----KDQYCAPPQISAEILKKMKS 766
KR GR + D VQK+ + + Y +V NG V+V ++ + QI+A +L K+K
Sbjct: 67 KRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLLTKLKE 126
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK- 825
TAE L + + VI+VP++F D++R++ DA +I GL LR++N+ TA AL YG+ K+
Sbjct: 127 TAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGIYKQD 186
Query: 826 ---PDD--RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880
D+ RI+V D+G F +S + + +VL T D FLGG++FD +++ H
Sbjct: 187 LPSLDEKPRIVVFVDMGHSAFQVSACAF----NKGKLKVLGTAFDPFLGGKNFDEKLVEH 242
Query: 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEK-AKIELSNAEQTDINLPYITADKNGPKHLNV 939
EFK + +D A+ RL + EK K+ SN+ +N+ DK+ ++
Sbjct: 243 FCAEFKTKYKLDAKSKIRALLRLYQECEKLKKLMSSNSTDLPLNIECFMNDKD----VSG 298
Query: 940 KITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE 999
K+ RS+ E L DL+ + P L + +S + +VGG TR+P V++ +++FF
Sbjct: 299 KMNRSQFEELCADLLQRIEVPLYSLLEQTHLKVEDVSAVEIVGGATRIPAVKERIAKFFG 358
Query: 1000 KEVKKDINPDEAVAVGASVQAGVLS 1024
K+V +N DEAVA G ++Q +LS
Sbjct: 359 KDVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 226 bits (577), Expect = 2e-65
Identities = 135/393 (34%), Positives = 211/393 (53%), Gaps = 24/393 (6%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
++GIDLG + VAV G + I N R TP+ + + NR I G AK Q I+N
Sbjct: 2 VVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSI-GAAAKSQVISNAK 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAEI 120
NT+ KR GR ++D VQ + Y +V G ++V +++ Q++A +
Sbjct: 61 NTVQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAML 120
Query: 121 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
L K+K TAE+ L + + V++VP ++ D++R++ DA +IAGL LR++NE TA ALAY
Sbjct: 121 LTKLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAY 180
Query: 181 G--------LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 232
G L++KP R +V D+G + +SV + + +VL+T DT LGG
Sbjct: 181 GIYKQDLPALEEKP--RNVVFVDMGHSAYQVSVCAF----NKGKLKVLATAFDTTLGGRK 234
Query: 233 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADK 291
FD ++N+ EF + +D+ A+ RL + EK K +S NA +N+ D
Sbjct: 235 FDEVLVNYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDI 294
Query: 292 NGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQ 351
+ +N R K + +DL+++ P L AK+ K I + +VGG TR+P V+
Sbjct: 295 DVSGTMN----RGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVK 350
Query: 352 KMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384
+ +S+FF KEV +N DEAVA G ++Q +LS
Sbjct: 351 EKISKFFGKEVSTTLNADEAVARGCALQCAILS 383
Score = 214 bits (547), Expect = 2e-61
Identities = 131/387 (33%), Positives = 206/387 (53%), Gaps = 24/387 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G + VAV G + I N R TP+ + + NR I G AK Q I+N NT+
Sbjct: 8 GFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSI-GAAAKSQVISNAKNTVQGF 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV----KDQYCAPPQISAEILKKMKS 766
KR GR ++D VQ + + Y +V G ++V +++ Q++A +L K+K
Sbjct: 67 KRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLLTKLKE 126
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG----- 821
TAE+ L + + V++VP ++ D++R++ DA +IAGL LR++NE TA ALAYG
Sbjct: 127 TAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQD 186
Query: 822 ---LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRII 878
L++KP R +V D+G + +SV + + +VL+T DT LGG FD ++
Sbjct: 187 LPALEEKP--RNVVFVDMGHSAYQVSVCAF----NKGKLKVLATAFDTTLGGRKFDEVLV 240
Query: 879 NHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADKNGPKHL 937
N+ EF + +D+ A+ RL + EK K +S NA +N+ D + +
Sbjct: 241 NYFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSANASDLPLNIECFMNDIDVSGTM 300
Query: 938 NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF 997
N R K + +DL+++ P L AK+ K I + +VGG TR+P V++ +S+F
Sbjct: 301 N----RGKFLEMCDDLLARVEPPLRSVLEQAKLKKEDIYAVEIVGGATRIPAVKEKISKF 356
Query: 998 FEKEVKKDINPDEAVAVGASVQAGVLS 1024
F KEV +N DEAVA G ++Q +LS
Sbjct: 357 FGKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 224 bits (571), Expect = 1e-64
Identities = 131/393 (33%), Positives = 219/393 (55%), Gaps = 24/393 (6%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
++GIDLG N +AV +G + I N R TP+ + R I G AK Q +TN
Sbjct: 2 VVGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAI-GNAAKSQIVTNVR 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEI 120
NT++ K+L GR + D IVQT +PY++ NG V+V+ ++ A Q++ +
Sbjct: 61 NTIHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGML 120
Query: 121 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
L K+K T+E L + + VI++P++F D++R++ A ++AGL LR++NE TA ALAY
Sbjct: 121 LAKLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAY 180
Query: 181 G--------LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 232
G LD+KP R +V D+G + +SV + + +VL+T D +LGG +
Sbjct: 181 GIYKQDLPALDEKP--RNVVFIDMGHSAYQVSVCAF----NKGKLKVLATTFDPYLGGRN 234
Query: 233 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADK 291
FD ++++ EFK + +++ +S A+ RL + EK K +S NA +N+ D
Sbjct: 235 FDEALVDYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDL 294
Query: 292 NGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQ 351
+ ++ K+ R++ E L L+++ P + + A + + I I +VGG TR+P V+
Sbjct: 295 D----VSSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVK 350
Query: 352 KMVSEFFEKEVKKDINPDEAVAVGASVQAGVLS 384
+ ++ FF K++ +N DEAVA G ++Q +LS
Sbjct: 351 EQITSFFLKDISTTLNADEAVARGCALQCAILS 383
Score = 211 bits (539), Expect = 2e-60
Identities = 126/387 (32%), Positives = 213/387 (55%), Gaps = 24/387 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G N +AV +G + I N R TP+ + R I G AK Q +TN NT++
Sbjct: 8 GFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAI-GNAAKSQIVTNVRNTIHGF 66
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVK----DQYCAPPQISAEILKKMKS 766
K+L GR + D IVQ + +PY++ NG V+V+ ++ A Q++ +L K+K
Sbjct: 67 KKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGMLLAKLKE 126
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG----- 821
T+E L + + VI++P++F D++R++ A ++AGL LR++NE TA ALAYG
Sbjct: 127 TSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGIYKQD 186
Query: 822 ---LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRII 878
LD+KP R +V D+G + +SV + + +VL+T D +LGG +FD ++
Sbjct: 187 LPALDEKP--RNVVFIDMGHSAYQVSVCAF----NKGKLKVLATTFDPYLGGRNFDEALV 240
Query: 879 NHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELS-NAEQTDINLPYITADKNGPKHL 937
++ EFK + +++ +S A+ RL + EK K +S NA +N+ D + +
Sbjct: 241 DYFCDEFKTKYKINVKENSRALLRLYQECEKLKKLMSANASDLPLNIECFMNDLD----V 296
Query: 938 NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF 997
+ K+ R++ E L L+++ P + + A + + I I +VGG TR+P V++ ++ F
Sbjct: 297 SSKMNRAQFEQLCASLLARVEPPLKAVMEQANLQREDIYSIEIVGGATRIPAVKEQITSF 356
Query: 998 FEKEVKKDINPDEAVAVGASVQAGVLS 1024
F K++ +N DEAVA G ++Q +LS
Sbjct: 357 FLKDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 215 bits (548), Expect = 1e-61
Identities = 120/385 (31%), Positives = 193/385 (50%), Gaps = 19/385 (4%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
G+DLG NS +AV N ++ N R+TPSVVG+ NR + G K + +N N
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKN 59
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVK----DKKLAPPQISAEIL 121
T+ +KR+IG Y + K K+V D+ EV+ + Q++A +
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFI 119
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
K+K T + I I VP ++ + QR DA +IAGL +RI+N+ TAA ++YG
Sbjct: 120 DKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYG 179
Query: 182 LDKKPD------DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDM 235
+ K RI+ D+G ++ S++ + Q +VL T D GG DFD+
Sbjct: 180 IFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFK----KGQLKVLGTACDKHFGGRDFDL 235
Query: 236 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPK 295
I H EFK + +D+ + A R+ AAEK K LS + N P+
Sbjct: 236 AITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLS----ANTNAPFSVESVMNDV 291
Query: 296 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 355
++ +++R +LE LV+ L+ + +P AL AK+ ++ + ++GG TR+P +++ +S
Sbjct: 292 DVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSIS 351
Query: 356 EFFEKEVKKDINPDEAVAVGASVQA 380
E F K + +N DEA+A GA+
Sbjct: 352 EAFGKPLSTTLNQDEAIAKGAAFIC 376
Score = 209 bits (534), Expect = 1e-59
Identities = 120/386 (31%), Positives = 194/386 (50%), Gaps = 21/386 (5%)
Query: 646 FGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 705
FG G NS +AV N ++ N R+TPSVVG+ NR + G K + +N N
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKN 59
Query: 706 TLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV-----KDQYCAPPQISAEI 760
T+ +KR+IG Y +++ K K+V D+ EV K + + Q++A
Sbjct: 60 TVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVF-SATQLAAMF 118
Query: 761 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 820
+ K+K T + I I VP ++ + QR DA +IAGL +RI+N+ TAA ++Y
Sbjct: 119 IDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSY 178
Query: 821 GLDKKPD------DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 874
G+ K RI+ D+G ++ S++ + Q +VL T D GG DFD
Sbjct: 179 GIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFK----KGQLKVLGTACDKHFGGRDFD 234
Query: 875 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGP 934
+ I H EFK + +D+ + A R+ AAEK K LS + N P+
Sbjct: 235 LAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLS----ANTNAPFSVESVMND 290
Query: 935 KHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMV 994
++ +++R +LE LV+ L+ + +P AL AK+ ++ + ++GG TR+P +++ +
Sbjct: 291 VDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSI 350
Query: 995 SEFFEKEVKKDINPDEAVAVGASVQA 1020
SE F K + +N DEA+A GA+
Sbjct: 351 SEAFGKPLSTTLNQDEAIAKGAAFIC 376
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 209 bits (533), Expect = 2e-59
Identities = 117/393 (29%), Positives = 185/393 (47%), Gaps = 26/393 (6%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
+IGI+ G T S +A +N GK VI N +G R PS + Y + G AK Q I N
Sbjct: 2 VIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQ-EYHGNQAKAQLIRNAK 60
Query: 65 NTLYAIKRLIGRKYTDEIVQTVLKMVPYK---IVAADNGDAWVEV--KDKKLAPPQISAE 119
NT+ + L+G+ +++ V P I E K+ L +++
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 120 ILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179
L+++K AE FL +K+ AV++VP +F+D Q +A A + AGL VL++I EP AA LA
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 180 YGLDK----KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDM 235
Y + + DR +VV D GG D+SVI + G + +L+T D LGG+ D
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRG--GL--YTILATAHDPGLGGDTLDD 236
Query: 236 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPK 295
++ H EF + D ++ A+ +L+ +E K LS + + + + G
Sbjct: 237 ALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCS---VESLAEGID 293
Query: 296 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 355
+ I R + E L + + A+ A +D I E++LVGG P + +S
Sbjct: 294 -FHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPKLASNLS 352
Query: 356 EFFEKEVK--------KDINPDEAVAVGASVQA 380
F + K ++P E VA G ++QA
Sbjct: 353 YLFPETTTITAPITVSKALDPSELVARGCAIQA 385
Score = 196 bits (499), Expect = 9e-55
Identities = 118/399 (29%), Positives = 185/399 (46%), Gaps = 34/399 (8%)
Query: 640 IGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQA 699
IGI FG T S +A +N GK VI N +G R PS + Y + G AK Q
Sbjct: 3 IGI--NFG----NTYSSIACINQGKADVIANEDGERQIPSAISYHGEQ-EYHGNQAKAQL 55
Query: 700 ITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQ------YCAP 753
I N NT+ + L+G+ + EI VA + V+ K++
Sbjct: 56 IRNAKNTITNFRDLLGKPF-SEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTV 114
Query: 754 PQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEP 813
+++ L+++K AE FL +K+ AV++VP +F+D Q +A A + AGL VL++I EP
Sbjct: 115 HEVTVRFLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEP 174
Query: 814 TAAALAYGLDK----KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLG 869
AA LAY + + DR +VV D GG D+SVI + G + +L+T D LG
Sbjct: 175 AAALLAYDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRG--GL--YTILATAHDPGLG 230
Query: 870 GEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITA 929
G+ D ++ H EF + D ++ A+ +L+ +E K LS + + + +
Sbjct: 231 GDTLDDALVKHFAKEFTKKTKTDPRTNARALAKLRAESEITKKTLSASTSATCS---VES 287
Query: 930 DKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPL 989
G + I R + E L + + A+ A +D I E++LVGG P
Sbjct: 288 LAEGID-FHSSINRLRFELLASAVFRQFAAFVTSAVAKAGLDALDIDEVLLVGGTAFTPK 346
Query: 990 VQKMVSEFFEKEVK--------KDINPDEAVAVGASVQA 1020
+ +S F + K ++P E VA G ++QA
Sbjct: 347 LASNLSYLFPETTTITAPITVSKALDPSELVARGCAIQA 385
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 129 bits (326), Expect = 1e-31
Identities = 96/451 (21%), Positives = 169/451 (37%), Gaps = 117/451 (25%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVV-----GYTEDNRIIVGLPAKRQAI 60
+GID GT+NS VAV +G+P+++ G T PS + + ++ G A +
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 61 TNPNNTLY--AIKRLIGRKYTDEIVQTVLKMVPYK---IVAADNGDAWVEVKDKKLAPPQ 115
P ++K +G + +T + +VA
Sbjct: 61 EGPGEGRLMRSLKSFLG---SSLFRETRIFGRRLTFEDLVAR------------------ 99
Query: 116 ISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQ----RQATKD---AGKIAGLEVLR 168
L ++K AE L +I++ VI P +F QA A + AG + +
Sbjct: 100 ----FLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVE 155
Query: 169 IINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEI---ANVDGETQFEVLSTNGD 225
EP AAAL Y ++ ++VV D+GGGT D S++ + + + ++L+ +G
Sbjct: 156 FQYEPIAAALDYEQRLTREELVLVV-DIGGGTSDFSLVRLGPSRRGRADRRADILAHSG- 213
Query: 226 TFLGGEDFDMRIINHLI-----YEFKIENG-----------VDL----------SGDSLA 259
+GG DFD R+ H + +G DL + +L
Sbjct: 214 VRIGGTDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLR 273
Query: 260 MQR--LKEAAEKAKIE------------------------LSNAEQTDINLPYITADKNG 293
R ++A E +E LS+ ++T I+L ++
Sbjct: 274 ELRELARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------ 327
Query: 294 PKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353
L +TR++ E + + + + AL A + I + L GG + +P V++
Sbjct: 328 EVGLEAPVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQA 387
Query: 354 VSEFFEKEVKKDINPDEAVAVG---ASVQAG 381
+ F P + G SV +G
Sbjct: 388 FAARF---------PAARIVEGDAFGSVASG 409
Score = 119 bits (302), Expect = 1e-28
Identities = 93/446 (20%), Positives = 164/446 (36%), Gaps = 117/446 (26%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVV-----GYTEDNRIIVGLPAKRQAITNPNN 705
GT+NS VAV +G+P+++ G T PS + + ++ G A + P
Sbjct: 6 GTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYLEGPGE 65
Query: 706 TLY--AIKRLIGRKYTDEIVQKDIKMVPYK---IVAADNGDAWVEVKDQYCAPPQISAEI 760
++K +G + + I +VA
Sbjct: 66 GRLMRSLKSFLG---SSLFRETRIFGRRLTFEDLVAR----------------------F 100
Query: 761 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQ----RQATKD---AGKIAGLEVLRIINEP 813
L ++K AE L +I++ VI P +F QA A + AG + + EP
Sbjct: 101 LAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQYEP 160
Query: 814 TAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEI---ANVDGETQFEVLSTNGDTFLGG 870
AAAL Y ++ ++VV D+GGGT D S++ + + + ++L+ +G +GG
Sbjct: 161 IAAALDYEQRLTREELVLVV-DIGGGTSDFSLVRLGPSRRGRADRRADILAHSG-VRIGG 218
Query: 871 EDFDMRIINHLI-----YEFKIENG-----------VDL----------SGDSLAMQR-- 902
DFD R+ H + +G DL + +L R
Sbjct: 219 TDFDRRLSLHAVMPLLGKGSTYRSGGKGLPVPNSYFADLATWHKINFLYTPKTLRELREL 278
Query: 903 LKEAAEKAKIE------------------------LSNAEQTDINLPYITADKNGPKHLN 938
++A E +E LS+ ++T I+L ++ L
Sbjct: 279 ARDAVEPELLERLITVIEEELGHRLARAVEAAKIALSSQDETRIDLDFV------EVGLE 332
Query: 939 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 998
+TR++ E + + + + AL A + I + L GG + +P V++ + F
Sbjct: 333 APVTRAEFEGAIAPDLERIEAAVDEALAQAGVSPDAIDRVFLTGGSSLVPAVRQAFAARF 392
Query: 999 EKEVKKDINPDEAVAVG---ASVQAG 1021
P + G SV +G
Sbjct: 393 ---------PAARIVEGDAFGSVASG 409
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 98.1 bits (245), Expect = 2e-21
Identities = 103/433 (23%), Positives = 167/433 (38%), Gaps = 96/433 (22%)
Query: 5 IIGIDLGTTNS--CVAVLNNGKP--QVIENSEGGRT-----TPSVVGYTEDNRIIVGLPA 55
++GID GTT S A L++ P +VI GG P+ + Y
Sbjct: 2 VVGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILY------------ 49
Query: 56 KRQAITNPNNTLYAIKRLIGRKYTDEIVQTVLKMVP--YKIVAADNGDAWVE-VKDKKLA 112
+P L A R+Y + + + +K++ + K K L
Sbjct: 50 ------DPEGKLVAWGYEAEREYAELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLKPLP 103
Query: 113 PP----QISAEILKKMKSTAETFLNEKIEKA---------VITVPAYFNDSQRQATKDAG 159
P + A+ L+ + A L + V+TVPA ++D+ +QA ++A
Sbjct: 104 PGKTAVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAA 163
Query: 160 KIAGL-------EVLRIINEPTAAALA------YGLDKKPDDRIIVVYDLGGGTFDISVI 206
AGL + L I+ EP AAAL L+ KP D +V D GGGT D++V
Sbjct: 164 IKAGLVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVC-DAGGGTVDLTVY 222
Query: 207 EIANVDGETQFEVLST-----NGDTFL--GGEDFDMRIINHLIYEFKIENGVDLSGDSLA 259
E+ +V+ + + L+ G TF+ E+ + L YE ++ +L
Sbjct: 223 EVTSVEP-LRLKELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKS------PALW 275
Query: 260 MQRLKEAAEKAKIEL-SNAEQTDINLPYITADKNGPKHLN-----VKITRSKLESL---- 309
+ ++ E K T+I LP A +KI+ ++SL
Sbjct: 276 LILMRF-FETIKRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPV 334
Query: 310 ---VEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDI 366
+ DLI + L+ E K+ I LVGG P ++ + E F + +
Sbjct: 335 IEEIIDLIEEQLEQAE--------KGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVL 386
Query: 367 NPDE---AVAVGA 376
P + AV GA
Sbjct: 387 RPPDPQLAVVRGA 399
Score = 87.3 bits (217), Expect = 7e-18
Identities = 101/422 (23%), Positives = 161/422 (38%), Gaps = 86/422 (20%)
Query: 651 GTTNS--CVAVLNNGKP--QVIENSEGGRT-----TPSVVGYTEDNRII-VGLPAKR--- 697
GTT S A L++ P +VI GG P+ + Y + +++ G A+R
Sbjct: 8 GTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYEAEREYA 67
Query: 698 QAITNPNNTLYAIK---RLIGRKYTDEIVQKD----IKMVPYKIVAADNGDAWVEVKDQY 750
+ L+ L + K ++A D + +
Sbjct: 68 ELEAEDEGWLFFEWFKLLLDPDALKLQGDDKLKPLPPGKTAVDVIA----DYLRYLYEHA 123
Query: 751 CAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL------ 804
E LKK F IE V+TVPA ++D+ +QA ++A AGL
Sbjct: 124 L-------EELKK-TYGNGEFTALDIE-WVLTVPAIWSDAAKQAMREAAIKAGLVSSREG 174
Query: 805 -EVLRIINEPTAAALA------YGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQF 857
+ L I+ EP AAAL L+ KP D +V D GGGT D++V E+ +V+ +
Sbjct: 175 PDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVC-DAGGGTVDLTVYEVTSVEP-LRL 232
Query: 858 EVLST-----NGDTFL--GGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKA 910
+ L+ G TF+ E+ + L YE ++ +L + ++ E
Sbjct: 233 KELAAGSGGLCGSTFVDRAFEELLKERLGELFYELPSKS------PALWLILMRF-FETI 285
Query: 911 KIEL-SNAEQTDINLPYITADKNGPKHLN-----VKITRSKLESL-------VEDLISKS 957
K T+I LP A +KI+ ++SL + DLI +
Sbjct: 286 KRSFGGTDNDTNIVLPGSLALSKKDPERGIRNGELKISGEDMKSLFDPVIEEIIDLIEEQ 345
Query: 958 LKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE---AVAV 1014
L+ E K+ I LVGG P ++ + E F + + P + AV
Sbjct: 346 LEQAE--------KGDKVKYIFLVGGFGESPYLRSRLKERFSSRGIRVLRPPDPQLAVVR 397
Query: 1015 GA 1016
GA
Sbjct: 398 GA 399
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 79.1 bits (196), Expect = 4e-15
Identities = 103/470 (21%), Positives = 177/470 (37%), Gaps = 126/470 (26%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IG D GT N VAV+ +GKP+++ PS + + + + ++
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTL-CAPTREAVSEWLYRHLDVPAYDD 61
Query: 66 -TLYAIKRLIGRKYTDEI---VQTVLKMVPYKIVAADNGDAWVE-------VKDKK---- 110
++R I ++I Q+V ++E VK K
Sbjct: 62 ERQALLRRAIRYNREEDIDVTAQSVF-------FGLAALAQYLEDPEEVYFVKSPKSFLG 114
Query: 111 ---LAPPQIS------AEILKKMKSTAETFLNEKIEKAVITVPAYFN-----DSQRQAT- 155
L P Q++ ++ +K AE L I +AVI P F ++ RQA
Sbjct: 115 ASGLKPQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEG 174
Query: 156 --KDAGKIAGLEVLRIINEPTAAALAY--GLDKKPDDRIIVVYDLGGGTFDISVIE---- 207
+ A K AG + + EP AA L + L + + R++VV D+GGGT D S++
Sbjct: 175 ILERAAKRAGFKDVEFQFEPVAAGLDFEATLTE--EKRVLVV-DIGGGTTDCSMLLMGPS 231
Query: 208 -IANVDGETQFEVLSTNGDTFLGGEDFDMRI-INHLIYEF----KIENGVDL-------- 253
D L +G +GG D D+ + L+ + E G+ L
Sbjct: 232 WRGRADRSASL--LGHSGQR-IGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNA 288
Query: 254 -------------SGDSLAM--QRLKEAAE------------------------KAKIEL 274
S + + +++A E +AKI L
Sbjct: 289 VAINDVPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIAL 348
Query: 275 SNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSK 334
S+ +T +L +I+ L +I++ LE + +++ L+ ++AL+ A++ K
Sbjct: 349 SDQAETRASLDFISDG------LATEISQQGLEEAISQPLARILELVQLALDQAQV---K 399
Query: 335 ISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG---ASVQAG 381
I L GG R PL++ +++ P + G SV AG
Sbjct: 400 PDVIYLTGGSARSPLIRAALAQQL---------PGIPIVGGDDFGSVTAG 440
Score = 71.4 bits (176), Expect = 1e-12
Identities = 79/345 (22%), Positives = 135/345 (39%), Gaps = 100/345 (28%)
Query: 753 PPQIS------AEILKKMKSTAETFLNEKIEKAVITVPAYFN-----DSQRQAT---KDA 798
P Q++ ++ +K AE L I +AVI P F ++ RQA + A
Sbjct: 120 PQQVALFEDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERA 179
Query: 799 GKIAGLEVLRIINEPTAAALAY--GLDKKPDDRIIVVYDLGGGTFDISVIE-----IANV 851
K AG + + EP AA L + L + + R++VV D+GGGT D S++
Sbjct: 180 AKRAGFKDVEFQFEPVAAGLDFEATLTE--EKRVLVV-DIGGGTTDCSMLLMGPSWRGRA 236
Query: 852 DGETQFEVLSTNGDTFLGGEDFDMRI-INHLIYEF----KIENGVDL------------- 893
D L +G +GG D D+ + L+ + E G+ L
Sbjct: 237 DRSASL--LGHSGQR-IGGNDLDIALAFKQLMPLLGMGSETEKGIALPSLPFWNAVAIND 293
Query: 894 --------SGDSLAM--QRLKEAAE------------------------KAKIELSNAEQ 919
S + + +++A E +AKI LS+ +
Sbjct: 294 VPAQSDFYSLANGRLLNDLIRDAREPEKVARLLKVWRQRLSYRLVRSAEEAKIALSDQAE 353
Query: 920 TDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEII 979
T +L +I+ L +I++ LE + +++ L+ ++AL+ A++ K I
Sbjct: 354 TRASLDFISDG------LATEISQQGLEEAISQPLARILELVQLALDQAQV---KPDVIY 404
Query: 980 LVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG---ASVQAG 1021
L GG R PL++ +++ P + G SV AG
Sbjct: 405 LTGGSARSPLIRAALAQQL---------PGIPIVGGDDFGSVTAG 440
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 65.5 bits (161), Expect = 4e-11
Identities = 101/407 (24%), Positives = 160/407 (39%), Gaps = 131/407 (32%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGY-TEDNRII-VGLPAKRQAITNP 63
IGIDLGT N+ V V G V+ +E PSVV T+ +I+ VG AK
Sbjct: 1 IGIDLGTANTLVYVKGKGI--VL--NE-----PSVVAIDTKTGKILAVGEEAKE------ 45
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
++GR P I E+++
Sbjct: 46 ---------MLGR-----------------------------------TPGNI--EVIRP 59
Query: 124 MKS-------TAETFLNEKIEKA-----------VITVPAYFNDSQRQATKDAGKIAGLE 165
+K E L I+K VI VP+ + +R+A DA AG
Sbjct: 60 LKDGVIADFEATEAMLRYFIKKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAR 119
Query: 166 VLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNG 224
+ +I EP AAA+ GLD +P ++V D+GGGT +I+VI G V+S
Sbjct: 120 EVYLIEEPLAAAIGAGLDIFEPKGNMVV--DIGGGTTEIAVIS----LGGI---VVS--- 167
Query: 225 DTFL--GGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDI 282
+ GG+DFD II ++ ++ + G + AE+ KIE+ +A D
Sbjct: 168 -KSIRVGGDDFDEAIIRYVRRKYNLLIG-------------ERTAEEIKIEIGSAYPLDE 213
Query: 283 NLPYITADKNG----PKHLNV--KITRSKLESLVE---DLISKSLKPC--EVALNDAKID 331
++ P+ + V + R L+ ++ + I L+ E+A
Sbjct: 214 EETMEVKGRDLVTGLPRTVEVTSEEVREALKEPLDEIVEAIKSVLEKTPPELA------- 266
Query: 332 KSKISE--IILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA 376
+ I + I+L GG + + +++SE V+ +P VA GA
Sbjct: 267 -ADILDRGIVLTGGGALLRGLDELISEETGLPVRVAEDPLTCVAKGA 312
Score = 62.4 bits (153), Expect = 4e-10
Identities = 72/276 (26%), Positives = 119/276 (43%), Gaps = 61/276 (22%)
Query: 768 AETFLNEKIEKA-----------VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
E L I+K VI VP+ + +R+A DA AG + +I EP AA
Sbjct: 71 TEAMLRYFIKKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHAGAREVYLIEEPLAA 130
Query: 817 ALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFL--GGEDF 873
A+ GLD +P ++V D+GGGT +I+VI G V+S + GG+DF
Sbjct: 131 AIGAGLDIFEPKGNMVV--DIGGGTTEIAVIS----LGGI---VVS----KSIRVGGDDF 177
Query: 874 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG 933
D II ++ ++ + G + AE+ KIE+ +A D ++
Sbjct: 178 DEAIIRYVRRKYNLLIG-------------ERTAEEIKIEIGSAYPLDEEETMEVKGRDL 224
Query: 934 ----PKHLNV--KITRSKLESLVE---DLISKSLKPC--EVALNDAKIDKSKISE--IIL 980
P+ + V + R L+ ++ + I L+ E+A + I + I+L
Sbjct: 225 VTGLPRTVEVTSEEVREALKEPLDEIVEAIKSVLEKTPPELA--------ADILDRGIVL 276
Query: 981 VGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA 1016
GG + + +++SE V+ +P VA GA
Sbjct: 277 TGGGALLRGLDELISEETGLPVRVAEDPLTCVAKGA 312
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 61.5 bits (150), Expect = 8e-11
Identities = 38/145 (26%), Positives = 72/145 (49%), Gaps = 10/145 (6%)
Query: 510 EIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKL 569
E E E ++ L EL++ EE+ + K+ + +L E +K T+ + ++ +K
Sbjct: 4 EEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEF-----ENYRKRTEREREEAKKY 58
Query: 570 KEIVIENIIIELIPITDSMEMFAKNFDSNQTKES--EIIFLIFKLIKKFYKKFNIKQISE 627
IE +L+P+ D++E N+ +S E + +I K + K +K +++I
Sbjct: 59 A---IEKFAKDLLPVLDNLERALAAAKENEDVKSLVEGVEMILKQLLKVLEKHGVEKIEP 115
Query: 628 TGVLFNPDIHEAIGIYPTFGKKKGT 652
G F+P++HEA+ P+ K GT
Sbjct: 116 EGEPFDPNLHEAVSQVPSDEKPPGT 140
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 61.3 bits (150), Expect = 1e-09
Identities = 73/284 (25%), Positives = 121/284 (42%), Gaps = 76/284 (26%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGY-TEDNRII-VGLPAKRQAIT 61
K IGIDLGT N+ V V G ++ N PSVV T+ +++ VG AK
Sbjct: 9 KDIGIDLGTANTLVYVKGKG---IVLNE------PSVVAIDTKTGKVLAVGEEAKE---- 55
Query: 62 NPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEIL 121
++GR P I A +KD +A + + +L
Sbjct: 56 -----------MLGR-------------TPGNIEAIR------PLKDGVIADFEATEAML 85
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+ A + + VI VP+ + +R+A ++A + AG + +I EP AAA+ G
Sbjct: 86 RYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGAG 145
Query: 182 LD-KKPDDRIIVVYDLGGGTFDISVI---EIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
L +P ++V D+GGGT +++VI I V E+ + G++ D I
Sbjct: 146 LPVTEPVGNMVV--DIGGGTTEVAVISLGGI--VYSES----------IRVAGDEMDEAI 191
Query: 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTD 281
+ ++ ++ + L G+ AE+ KIE+ +A D
Sbjct: 192 VQYVRRKYNL-----LIGER--------TAEEIKIEIGSAYPLD 222
Score = 54.8 bits (133), Expect = 1e-07
Identities = 46/170 (27%), Positives = 78/170 (45%), Gaps = 42/170 (24%)
Query: 767 TAETFLNEKIEKA-----------VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTA 815
E L I+KA VI VP+ + +R+A ++A + AG + +I EP A
Sbjct: 80 ATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMA 139
Query: 816 AALAYGLD-KKPDDRIIVVYDLGGGTFDISVI---EIANVDGETQFEVLSTNGDTFLGGE 871
AA+ GL +P ++V D+GGGT +++VI I V E+ + G+
Sbjct: 140 AAIGAGLPVTEPVGNMVV--DIGGGTTEVAVISLGGI--VYSES----------IRVAGD 185
Query: 872 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTD 921
+ D I+ ++ ++ + L G+ AE+ KIE+ +A D
Sbjct: 186 EMDEAIVQYVRRKYNL-----LIGER--------TAEEIKIEIGSAYPLD 222
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 61.3 bits (149), Expect = 1e-09
Identities = 75/281 (26%), Positives = 128/281 (45%), Gaps = 76/281 (27%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGT N+ V V K + I +E PSVV A R
Sbjct: 5 IGIDLGTANTLVYV----KGRGIVLNE-----PSVV-------------AIRTDRDAKTK 42
Query: 66 TLYAI----KRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEIL 121
++ A+ K ++G+ P IVA +KD +A +++ +++
Sbjct: 43 SILAVGHEAKEMLGK-------------TPGNIVAIR------PMKDGVIADFEVTEKMI 83
Query: 122 K---KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 178
K K + ++F +I VI VP+ +R+A K++ AG + +I EP AAA+
Sbjct: 84 KYFIKQVHSRKSFFKPRI---VICVPSGITPVERRAVKESALSAGAREVYLIEEPMAAAI 140
Query: 179 AYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
GL ++P ++V D+GGGT +++VI + + V+S + +GG++FD I
Sbjct: 141 GAGLPVEEPTGSMVV--DIGGGTTEVAVISLGGI-------VVSRS--IRVGGDEFDEAI 189
Query: 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE 278
IN++ + + G ++ AE+ KIE+ +A
Sbjct: 190 INYIRRTYNLLIG-------------EQTAERIKIEIGSAY 217
Score = 52.8 bits (127), Expect = 6e-07
Identities = 49/176 (27%), Positives = 91/176 (51%), Gaps = 31/176 (17%)
Query: 747 KDQYCAPPQISAEILK---KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAG 803
KD A +++ +++K K + ++F +I VI VP+ +R+A K++ AG
Sbjct: 69 KDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRI---VICVPSGITPVERRAVKESALSAG 125
Query: 804 LEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLST 862
+ +I EP AAA+ GL ++P ++V D+GGGT +++VI + + V+S
Sbjct: 126 AREVYLIEEPMAAAIGAGLPVEEPTGSMVV--DIGGGTTEVAVISLGGI-------VVSR 176
Query: 863 NGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAE 918
+ +GG++FD IIN++ + + G ++ AE+ KIE+ +A
Sbjct: 177 S--IRVGGDEFDEAIINYIRRTYNLLIG-------------EQTAERIKIEIGSAY 217
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 60.6 bits (148), Expect = 2e-09
Identities = 93/387 (24%), Positives = 166/387 (42%), Gaps = 91/387 (23%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGY-TEDNRII-VGLPAKRQAITNP 63
IGIDLGT N+ V V G ++ N PSVV T+ +++ VG AK+
Sbjct: 4 IGIDLGTANTLVYVKGKG---IVLNE------PSVVAINTKTKKVLAVGNEAKK------ 48
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILK- 122
++GR P IVA +KD +A +++ +LK
Sbjct: 49 ---------MLGR-------------TPGNIVAVR------PLKDGVIADFEVTEAMLKY 80
Query: 123 --KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAY 180
K + ++ VI VP+ + +R+A K+A K AG + +I EP AAA+
Sbjct: 81 FIKKVHGRRSLSKPRV---VICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGA 137
Query: 181 GLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIIN 239
GL ++P ++V D+GGGT +++VI + + V S + G++ D II
Sbjct: 138 GLPVEEPTGNMVV--DIGGGTTEVAVISLGGI-------VTSKSVRV--AGDEMDEAIIK 186
Query: 240 HLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG------ 293
++ ++ + G AE+ KIE+ +A T+ + G
Sbjct: 187 YIRKKYNLLIGE-------------RTAERIKIEIGSAYPTEEEE---KMEIRGRDLVTG 230
Query: 294 -PKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSK-ISE--IILVGGQTRMPL 349
PK ++I+ ++ +++ +S ++ + L + + I + I+L GG +
Sbjct: 231 LPK--TIEISSEEVREALKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALLRG 288
Query: 350 VQKMVSEFFEKEVKKDINPDEAVAVGA 376
+ K++S+ V +P VA+G
Sbjct: 289 LDKLLSDETGLPVHIAEDPLTCVALGT 315
Score = 53.3 bits (129), Expect = 4e-07
Identities = 60/250 (24%), Positives = 115/250 (46%), Gaps = 40/250 (16%)
Query: 778 KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDL 836
+ VI VP+ + +R+A K+A K AG + +I EP AAA+ GL ++P ++V D+
Sbjct: 95 RVVICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAIGAGLPVEEPTGNMVV--DI 152
Query: 837 GGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGD 896
GGGT +++VI + + V S + G++ D II ++ ++ + G
Sbjct: 153 GGGTTEVAVISLGGI-------VTSKSVRV--AGDEMDEAIIKYIRKKYNLLIGE----- 198
Query: 897 SLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG-------PKHLNVKITRSKLESL 949
AE+ KIE+ +A T+ + G PK ++I+ ++
Sbjct: 199 --------RTAERIKIEIGSAYPTEEEE---KMEIRGRDLVTGLPK--TIEISSEEVREA 245
Query: 950 VEDLISKSLKPCEVALNDAKIDKSK-ISE--IILVGGQTRMPLVQKMVSEFFEKEVKKDI 1006
+++ +S ++ + L + + I + I+L GG + + K++S+ V
Sbjct: 246 LKEPVSAIVEAVKEVLEKTPPELAADIVDRGIVLTGGGALLRGLDKLLSDETGLPVHIAE 305
Query: 1007 NPDEAVAVGA 1016
+P VA+G
Sbjct: 306 DPLTCVALGT 315
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 60.3 bits (146), Expect = 2e-09
Identities = 97/382 (25%), Positives = 163/382 (42%), Gaps = 81/382 (21%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGT N V N G +I N PSVV + + ++ + +
Sbjct: 7 IGIDLGTANILVYSKNKG---IILNE------PSVVAVDTETKAVLAIGTE--------- 48
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKKMK 125
K +IG+ P KIVA +KD +A ++ ++LK++
Sbjct: 49 ----AKNMIGK-------------TPGKIVAVR------PMKDGVIADYDMTTDLLKQIM 85
Query: 126 STAETFLNEKIEK--AVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
A + K V+ P+ +R+A DA K G + + +I EP AAA+ G D
Sbjct: 86 KKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI--GAD 143
Query: 184 KKPDDRII-VVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLI 242
D+ + VV D+GGGT ++++I V+S + +GG+ D I++ +
Sbjct: 144 LPVDEPVANVVVDIGGGTTEVAIISFGG--------VVSCH-SIRIGGDQLDEDIVSFVR 194
Query: 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA--EQTDINLPYITAD-KNG-PKHLN 298
++ + G + AE+ K+E+ A E + D G PK +
Sbjct: 195 KKYNLLIG-------------ERTAEQVKMEIGYALIEHEPETMEVRGRDLVTGLPKTIT 241
Query: 299 V---KITRSKLESLVEDL--ISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353
+ +I + ESL+ L I +L+ C L+ +D+ +IL GG + +++
Sbjct: 242 LESKEIQGAMRESLLHILEAIRATLEDCPPELSGDIVDRG----VILTGGGALLNGIKEW 297
Query: 354 VSEFFEKEVKKDINPDEAVAVG 375
+SE V NP E+VA+G
Sbjct: 298 LSEEIVVPVHVAANPLESVAIG 319
Score = 53.0 bits (127), Expect = 4e-07
Identities = 88/355 (24%), Positives = 156/355 (43%), Gaps = 64/355 (18%)
Query: 677 TPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI----KRLIGRKYTDEIVQKDIKMVPY 732
T +++ Y+++ II+ P+ A+ + AI K +IG+ P
Sbjct: 13 TANILVYSKNKGIILNEPSV-VAVDTETKAVLAIGTEAKNMIGK-------------TPG 58
Query: 733 KIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEK--AVITVPAYFNDS 790
KIVA +KD A ++ ++LK++ A + K V+ P+
Sbjct: 59 KIVAVR------PMKDGVIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAV 112
Query: 791 QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRII-VVYDLGGGTFDISVIEIA 849
+R+A DA K G + + +I EP AAA+ G D D+ + VV D+GGGT ++++I
Sbjct: 113 ERRAISDAVKNCGAKNVHLIEEPVAAAI--GADLPVDEPVANVVVDIGGGTTEVAIISFG 170
Query: 850 NVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEK 909
V+S + +GG+ D I++ + ++ + G + AE+
Sbjct: 171 G--------VVSCH-SIRIGGDQLDEDIVSFVRKKYNLLIG-------------ERTAEQ 208
Query: 910 AKIELSNA--EQTDINLPYITAD-KNG-PKHLNV---KITRSKLESLVEDL--ISKSLKP 960
K+E+ A E + D G PK + + +I + ESL+ L I +L+
Sbjct: 209 VKMEIGYALIEHEPETMEVRGRDLVTGLPKTITLESKEIQGAMRESLLHILEAIRATLED 268
Query: 961 CEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 1015
C L+ +D+ +IL GG + +++ +SE V NP E+VA+G
Sbjct: 269 CPPELSGDIVDRG----VILTGGGALLNGIKEWLSEEIVVPVHVAANPLESVAIG 319
>gnl|CDD|238252 cd00446, GrpE, GrpE is the adenine nucleotide exchange factor of
DnaK (Hsp70)-type ATPases. The GrpE dimer binds to the
ATPase domain of Hsp70 catalyzing the dissociation of
ADP, which enables rebinding of ATP, one step in the
Hsp70 reaction cycle in protein folding. In eukaryotes,
only the mitochondrial Hsp70, not the cytosolic form, is
GrpE dependent.
Length = 137
Score = 56.4 bits (137), Expect = 3e-09
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 10/111 (9%)
Query: 556 KKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIF---LIFKL 612
+K T+ + ++ RK IE +L+P+ D++E A + + ++ + K
Sbjct: 19 RKRTEREREEARKY---AIEKFAKDLLPVLDNLER-ALEAAKKEEELKNLVEGVEMTLKQ 74
Query: 613 IKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663
+ +K +++I G F+P++HEA+ P+ + GT V VL G
Sbjct: 75 LLDVLEKHGVEKIEPEGEPFDPNLHEAVMQVPSPDVEPGT---VVEVLQKG 122
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 56.6 bits (137), Expect = 8e-09
Identities = 26/147 (17%), Positives = 66/147 (44%), Gaps = 14/147 (9%)
Query: 509 SEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRK 568
E + ++ + +EL+ + EEL ++ + + +F + T++E +
Sbjct: 31 EPEEENELEEEQQEIAELEAQLEEL----KDKYLRAQAEFENLRKRTERE-------REE 79
Query: 569 LKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIF---LIFKLIKKFYKKFNIKQI 625
K+ IE +L+P+ D++E + + ++ E ++ + + +K +++I
Sbjct: 80 AKKYAIEKFAKDLLPVIDNLERALEAAEDDKDPEKALLEGVEMTLDQLLDALEKLGVEEI 139
Query: 626 SETGVLFNPDIHEAIGIYPTFGKKKGT 652
G F+P++HEA+ + + T
Sbjct: 140 GPEGEKFDPNLHEAVQRVESEDVEPNT 166
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 58.0 bits (141), Expect = 1e-08
Identities = 75/275 (27%), Positives = 119/275 (43%), Gaps = 67/275 (24%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGT N+ V V G I +E PSVV + + V L +A
Sbjct: 9 IGIDLGTANTLVYVKGKG----IVLNE-----PSVVAIESEGKTKVVLAVGEEA------ 53
Query: 66 TLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK-M 124
K+++GR P IVA +KD +A +++ +LK +
Sbjct: 54 -----KQMLGR-------------TPGNIVAI------RPMKDGVIADFEVTELMLKYFI 89
Query: 125 KSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD- 183
K + + + VI VP+ D +R+A K+A + AG + +I EP AAA+ GL
Sbjct: 90 KKVHKNGSSFPKPRIVICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPI 149
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTF-LGGEDFDMRIINHLI 242
+P +V D+GGGT +++VI G + + +GG+ D II ++
Sbjct: 150 MEPTGS--MVVDIGGGTTEVAVI----SLGGI------VSSSSVRVGGDKMDEAIIVYVR 197
Query: 243 YEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 277
++ + G + AEK KIE+ +A
Sbjct: 198 KKYNLLIG-------------ERTAEKIKIEIGSA 219
Score = 51.1 bits (123), Expect = 2e-06
Identities = 42/140 (30%), Positives = 68/140 (48%), Gaps = 27/140 (19%)
Query: 780 VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGG 838
VI VP+ D +R+A K+A + AG + +I EP AAA+ GL +P +V D+GG
Sbjct: 105 VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMAAAIGAGLPIMEPTGS--MVVDIGG 162
Query: 839 GTFDISVIEIANVDGETQFEVLSTNGDTF-LGGEDFDMRIINHLIYEFKIENGVDLSGDS 897
GT +++VI G + + +GG+ D II ++ ++ + G
Sbjct: 163 GTTEVAVI----SLGGI------VSSSSVRVGGDKMDEAIIVYVRKKYNLLIG------- 205
Query: 898 LAMQRLKEAAEKAKIELSNA 917
+ AEK KIE+ +A
Sbjct: 206 ------ERTAEKIKIEIGSA 219
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 57.2 bits (139), Expect = 2e-08
Identities = 68/250 (27%), Positives = 112/250 (44%), Gaps = 67/250 (26%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNN 65
IGIDLGT N V V GK V+ PSVV AI N
Sbjct: 6 IGIDLGTAN--VLVYVKGKGIVLNE-------PSVV-----------------AIDKNTN 39
Query: 66 TLYAI----KRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEIL 121
+ A+ +R++GR P IVA ++D +A ++ ++L
Sbjct: 40 KVLAVGEEARRMVGR-------------TPGNIVAIR------PLRDGVIADYDVTEKML 80
Query: 122 KKMKSTA---ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 178
K + A F +I +I +P +++A ++A + AG + + +I EP AAA+
Sbjct: 81 KYFINKACGKRFFSKPRI---MICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAI 137
Query: 179 AYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
GLD +P ++V D+GGGT DI+V+ + + V S++ + G+ FD I
Sbjct: 138 GAGLDISQPSGNMVV--DIGGGTTDIAVLSLGGI-------VTSSS--IKVAGDKFDEAI 186
Query: 238 INHLIYEFKI 247
I ++ ++K+
Sbjct: 187 IRYIRKKYKL 196
Score = 54.1 bits (131), Expect = 2e-07
Identities = 33/111 (29%), Positives = 63/111 (56%), Gaps = 12/111 (10%)
Query: 778 KAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDL 836
+ +I +P +++A ++A + AG + + +I EP AAA+ GLD +P ++V D+
Sbjct: 97 RIMICIPTGITSVEKRAVREAAEQAGAKKVYLIEEPLAAAIGAGLDISQPSGNMVV--DI 154
Query: 837 GGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 887
GGGT DI+V+ + + V S++ + G+ FD II ++ ++K+
Sbjct: 155 GGGTTDIAVLSLGGI-------VTSSS--IKVAGDKFDEAIIRYIRKKYKL 196
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 56.4 bits (137), Expect = 2e-08
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 117 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 176
+ I++++K+T E L ++ A +P ++ +A + + AGLEV +++EPTAA
Sbjct: 69 AVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAA 128
Query: 177 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 207
A G+D V D+GGGT IS+++
Sbjct: 129 AAVLGIDNG------AVVDIGGGTTGISILK 153
Score = 56.4 bits (137), Expect = 2e-08
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 757 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
+ I++++K+T E L ++ A +P ++ +A + + AGLEV +++EPTAA
Sbjct: 69 AVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAA 128
Query: 817 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 847
A G+D V D+GGGT IS+++
Sbjct: 129 AAVLGIDNG------AVVDIGGGTTGISILK 153
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 54.5 bits (131), Expect = 3e-08
Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 11/114 (9%)
Query: 104 VEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT-------- 155
+ + E L+++ A L +I+ IT P R+
Sbjct: 30 PVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLI 89
Query: 156 --KDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 207
A + G + ++N+ AAALA GL K +D ++VV DLG GT I+++E
Sbjct: 90 PLALALEDLGGVPVAVVNDAVAAALAEGLFGKEEDTVLVV-DLGTGTTGIAIVE 142
Score = 53.7 bits (129), Expect = 5e-08
Identities = 30/100 (30%), Positives = 47/100 (47%), Gaps = 11/100 (11%)
Query: 758 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQAT----------KDAGKIAGLEVL 807
E L+++ A L +I+ IT P R+ A + G +
Sbjct: 44 EEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVIILPNLLLIPLALALEDLGGVPV 103
Query: 808 RIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIE 847
++N+ AAALA GL K +D ++VV DLG GT I+++E
Sbjct: 104 AVVNDAVAAALAEGLFGKEEDTVLVV-DLGTGTTGIAIVE 142
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 54.0 bits (130), Expect = 1e-07
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 117 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 176
+ EI++++K T E L ++ A +P + + + + AG+EVL +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 177 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 211
A + V D+GGGT IS+++ V
Sbjct: 102 AAVLQIKNG------AVVDVGGGTTGISILKKGKV 130
Score = 54.0 bits (130), Expect = 1e-07
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 757 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
+ EI++++K T E L ++ A +P + + + + AG+EVL +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 817 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 851
A + V D+GGGT IS+++ V
Sbjct: 102 AAVLQIKNG------AVVDVGGGTTGISILKKGKV 130
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 52.9 bits (127), Expect = 3e-07
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 117 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 176
+ EI++++K T E L + A +P + + + + AGLEVL +++EPTAA
Sbjct: 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA 133
Query: 177 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 211
A LD V D+GGGT IS+++ V
Sbjct: 134 ADVLQLDDG------GVVDIGGGTTGISIVKKGKV 162
Score = 52.9 bits (127), Expect = 3e-07
Identities = 31/95 (32%), Positives = 49/95 (51%), Gaps = 6/95 (6%)
Query: 757 SAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
+ EI++++K T E L + A +P + + + + AGLEVL +++EPTAA
Sbjct: 74 AVEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAA 133
Query: 817 ALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANV 851
A LD V D+GGGT IS+++ V
Sbjct: 134 ADVLQLDDG------GVVDIGGGTTGISIVKKGKV 162
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 47.8 bits (115), Expect = 2e-05
Identities = 76/292 (26%), Positives = 118/292 (40%), Gaps = 105/292 (35%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRII--VGLPAKRQAITNP 63
+GIDLGT N+ V V GK V+ +E PSVV D + + VG AK+
Sbjct: 8 LGIDLGTANTLVYV--KGKGIVL--NE-----PSVVAIRTDTKKVLAVGEEAKQ------ 52
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
++GR P IVA ++
Sbjct: 53 ---------MLGR-------------TPGNIVA------------------------IRP 66
Query: 124 MKS-------TAETFLNEKIEKA----------VITVPAYFNDSQRQATKDAGKIAGLEV 166
MK E L I+K VI VP+ + +R+A +++ AG
Sbjct: 67 MKDGVIADFDVTEKMLKYFIKKVHKNFRPSPRVVICVPSGITEVERRAVRESALGAGARE 126
Query: 167 LRIINEPTAAALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGD 225
+ +I EP AAA+ GL +P ++V D+GGGT +++VI + + V S +
Sbjct: 127 VYLIEEPMAAAIGAGLPVTEPTGSMVV--DIGGGTTEVAVISLGGI-------VYSKS-- 175
Query: 226 TFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 277
+GG+ FD IIN++ + + L G+ AE+ KIE+ +A
Sbjct: 176 VRVGGDKFDEAIINYVRRNYNL-----LIGER--------TAERIKIEIGSA 214
Score = 42.0 bits (100), Expect = 0.002
Identities = 46/162 (28%), Positives = 77/162 (47%), Gaps = 35/162 (21%)
Query: 767 TAETFLNEKIEKA----------VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAA 816
E L I+K VI VP+ + +R+A +++ AG + +I EP AA
Sbjct: 77 VTEKMLKYFIKKVHKNFRPSPRVVICVPSGITEVERRAVRESALGAGAREVYLIEEPMAA 136
Query: 817 ALAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDM 875
A+ GL +P ++V D+GGGT +++VI + + V S + +GG+ FD
Sbjct: 137 AIGAGLPVTEPTGSMVV--DIGGGTTEVAVISLGGI-------VYSKS--VRVGGDKFDE 185
Query: 876 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 917
IIN++ + + L G+ AE+ KIE+ +A
Sbjct: 186 AIINYVRRNYNL-----LIGER--------TAERIKIEIGSA 214
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 47.7 bits (114), Expect = 3e-05
Identities = 59/280 (21%), Positives = 100/280 (35%), Gaps = 55/280 (19%)
Query: 145 AYFNDSQRQATKDAGKIAGL--EVLRIINEPTA--------AALAYGLDKKPDDRIIVVY 194
+F+ ++R +K+ L L + E + A GL + V
Sbjct: 177 GWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAG----VPVA- 231
Query: 195 DLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE-----DFDMRI--INHLIYEFKI 247
GGG I VD L T+G D + H + +
Sbjct: 232 -AGGGDNAAGAIGTGTVDPGDAMMSLGTSG-VVYAVTDKPLPDPAGAVHGFCHALPGGWL 289
Query: 248 ENGVDLSGDSLAMQRLKEAAEKAKIELSN--AEQTDIN------LPYITADK---NGPK- 295
GV LS S +++ +E K +E N AEQ+ LPY+ ++ P+
Sbjct: 290 PMGVTLSATS-SLEWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQA 348
Query: 296 ----------HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQT 345
+TR+ LE ++ +L+ L +A I I L+GG
Sbjct: 349 RGSFIGLTHNTTRADLTRAVLEG-----VTFALRDSLDILREAGGIP--IQSIRLIGGGA 401
Query: 346 RMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 385
+ P ++M+++ F V +E A+GA++ A G
Sbjct: 402 KSPAWRQMLADIFGTPVDV-PEGEEGPALGAAILAAWALG 440
Score = 47.7 bits (114), Expect = 3e-05
Identities = 59/280 (21%), Positives = 100/280 (35%), Gaps = 55/280 (19%)
Query: 785 AYFNDSQRQATKDAGKIAGL--EVLRIINEPTA--------AALAYGLDKKPDDRIIVVY 834
+F+ ++R +K+ L L + E + A GL + V
Sbjct: 177 GWFDVAKRAWSKELLDALDLPESQLPELIESSEKAGTVRPEVAARLGLSAG----VPVA- 231
Query: 835 DLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGE-----DFDMRI--INHLIYEFKI 887
GGG I VD L T+G D + H + +
Sbjct: 232 -AGGGDNAAGAIGTGTVDPGDAMMSLGTSG-VVYAVTDKPLPDPAGAVHGFCHALPGGWL 289
Query: 888 ENGVDLSGDSLAMQRLKEAAEKAKIELSN--AEQTDIN------LPYITADK---NGPK- 935
GV LS S +++ +E K +E N AEQ+ LPY+ ++ P+
Sbjct: 290 PMGVTLSATS-SLEWFRELFGKEDVEALNELAEQSPPGAEGVTFLPYLNGERTPHLDPQA 348
Query: 936 ----------HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQT 985
+TR+ LE ++ +L+ L +A I I L+GG
Sbjct: 349 RGSFIGLTHNTTRADLTRAVLEG-----VTFALRDSLDILREAGGIP--IQSIRLIGGGA 401
Query: 986 RMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSG 1025
+ P ++M+++ F V +E A+GA++ A G
Sbjct: 402 KSPAWRQMLADIFGTPVDV-PEGEEGPALGAAILAAWALG 440
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 43.4 bits (103), Expect = 2e-04
Identities = 35/154 (22%), Positives = 62/154 (40%), Gaps = 28/154 (18%)
Query: 509 SEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCS-------FVLETKKETD- 560
+E+E + +AEL ELD + +I LE + VL + E +
Sbjct: 19 AEVEQQEEADEAELEDELD--------EADARIAELEAQLAEAQAEERDSVLRARAEVEN 70
Query: 561 ------YDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIK 614
D +K K +E EL+P+ D++E + D +I + +K
Sbjct: 71 IRRRAEQDVEKAHKF---ALEKFANELLPVIDNLERALQAADKENEALKALIEGVELTLK 127
Query: 615 KFY---KKFNIKQISETGVLFNPDIHEAIGIYPT 645
KF ++ + G FNP++H+AI + +
Sbjct: 128 SLLDTVAKFGVEVVGPVGEPFNPEVHQAISMQES 161
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 43.4 bits (102), Expect = 2e-04
Identities = 40/129 (31%), Positives = 64/129 (49%), Gaps = 13/129 (10%)
Query: 525 ELDKKFEELVKCKNEQIII---LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIEL 581
EL +K ++ E + I L+ +F ++ T+KE + + KE VI +EL
Sbjct: 49 ELKQKLQQKEVEAQEYLDIAQRLKAEFENYRKRTEKEK---SEMVEYGKEQVI----LEL 101
Query: 582 IPITDSME-MFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAI 640
+P+ D+ E A + D N KE I LI++ KK KF +K+I G +F+P H A+
Sbjct: 102 LPVMDNFERALASSGDYNSLKEG--IELIYRQFKKILDKFGVKEIEAEGQIFDPYKHHAV 159
Query: 641 GIYPTFGKK 649
GK+
Sbjct: 160 MQEEVEGKQ 168
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 42.4 bits (99), Expect = 5e-04
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 4/91 (4%)
Query: 574 IENIIIELIPITDSMEMFAKNFDSNQTKE-SEIIFLIFKLIKKFYKKFNIKQISETGVLF 632
+E +I L+P+ DS+E + D N E + L KL +KF+++QI G F
Sbjct: 94 VEKLISALLPVVDSLEQALQLADKNSDPSMHEGLELTMKLFLDALQKFDVEQIDPLGQTF 153
Query: 633 NPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663
+P HEA+ + P G NS + V G
Sbjct: 154 DPQQHEAMSMQPAPGAPP---NSVITVFQKG 181
>gnl|CDD|184540 PRK14153, PRK14153, heat shock protein GrpE; Provisional.
Length = 194
Score = 41.4 bits (97), Expect = 0.001
Identities = 32/129 (24%), Positives = 64/129 (49%), Gaps = 21/129 (16%)
Query: 523 NSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEI------VIEN 576
E E KC E+I L+E+ + ++D + R +E+ V+E
Sbjct: 32 EPEDSTADSETEKC-REEIESLKEQL------FRLAAEFDNFRKRTAREMEENRKFVLEQ 84
Query: 577 IIIELIPITDSMEMFAKNFDSNQTKE--SEIIFLIFKLIKKFY---KKFNIKQISETGVL 631
++++L+ +TD+ F + +S +T E + I+ I + K+F+ +K+ +++I G
Sbjct: 85 VLLDLLEVTDN---FERALESARTAEDMNSIVEGIEMVSKQFFSILEKYGLERIECEGEE 141
Query: 632 FNPDIHEAI 640
F+P HEA+
Sbjct: 142 FDPHRHEAM 150
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 40.8 bits (96), Expect = 0.004
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP--DEAVAVGASVQA-GVLSG-VVKD 389
K +EI L+GG + P ++++++ EV + P +EA A+GA++QA L+G D
Sbjct: 394 KSTEIRLIGGGAKSPAWRQIIADIMNAEV---VVPDTEEAAALGAAIQAAWCLTGEDGAD 450
Query: 390 VLLLDVT 396
V L ++
Sbjct: 451 VALAELC 457
Score = 40.8 bits (96), Expect = 0.004
Identities = 22/67 (32%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP--DEAVAVGASVQA-GVLSG-VVKD 1029
K +EI L+GG + P ++++++ EV + P +EA A+GA++QA L+G D
Sbjct: 394 KSTEIRLIGGGAKSPAWRQIIADIMNAEV---VVPDTEEAAALGAAIQAAWCLTGEDGAD 450
Query: 1030 VLLLDVT 1036
V L ++
Sbjct: 451 VALAELC 457
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 40.0 bits (94), Expect = 0.007
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 276 NAEQTDINLPYITADKNGPKHLNVK--ITRSKLESLVEDLISKSLKPCEVALNDAKIDKS 333
N E+T N P G + + + R+ LE + SL+ C L+
Sbjct: 340 NGERTPYNDPNARGAFFGLTLSHTRGHLARAVLEGVA-----FSLRDCLEVLHGMGT--- 391
Query: 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 389
I L+GG + L ++++++ V+ N + A +VGA++ A V +G D
Sbjct: 392 APQRIKLIGGGAKSELWRQILADVLGVPVELPANAEGA-SVGAALLAAVGAGDFAD 446
Score = 40.0 bits (94), Expect = 0.007
Identities = 28/116 (24%), Positives = 50/116 (43%), Gaps = 11/116 (9%)
Query: 916 NAEQTDINLPYITADKNGPKHLNVK--ITRSKLESLVEDLISKSLKPCEVALNDAKIDKS 973
N E+T N P G + + + R+ LE + SL+ C L+
Sbjct: 340 NGERTPYNDPNARGAFFGLTLSHTRGHLARAVLEGVA-----FSLRDCLEVLHGMGT--- 391
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 1029
I L+GG + L ++++++ V+ N + A +VGA++ A V +G D
Sbjct: 392 APQRIKLIGGGAKSELWRQILADVLGVPVELPANAEGA-SVGAALLAAVGAGDFAD 446
>gnl|CDD|182379 PRK10325, PRK10325, heat shock protein GrpE; Provisional.
Length = 197
Score = 38.1 bits (88), Expect = 0.011
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 3/83 (3%)
Query: 563 EDKIRKLKEIVIENIIIELIPITDSMEM---FAKNFDSNQTKESEIIFLIFKLIKKFYKK 619
E I K + +E I EL+P+ DS++ A + + + E I L K + +K
Sbjct: 77 ELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEGIELTLKSMLDVVRK 136
Query: 620 FNIKQISETGVLFNPDIHEAIGI 642
F ++ I+ET V +P++H+AI +
Sbjct: 137 FGVEVIAETNVPLDPNVHQAIAM 159
>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
proteins with similarity to bacterial D-Xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 514
Score = 38.0 bits (89), Expect = 0.028
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 389
++ E+ VGG R L +++++ + +++ +P+EA A GA+ A V G++
Sbjct: 414 RLGELRFVGGGARSDLWCQIIADVLGRPIRRVEDPEEAGARGAAAIAAVGLGLLSF 469
Score = 38.0 bits (89), Expect = 0.028
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 1029
++ E+ VGG R L +++++ + +++ +P+EA A GA+ A V G++
Sbjct: 414 RLGELRFVGGGARSDLWCQIIADVLGRPIRRVEDPEEAGARGAAAIAAVGLGLLSF 469
>gnl|CDD|217229 pfam02782, FGGY_C, FGGY family of carbohydrate kinases, C-terminal
domain. This domain adopts a ribonuclease H-like fold
and is structurally related to the N-terminal domain.
Length = 193
Score = 36.9 bits (86), Expect = 0.030
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 331 DKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 382
+ I II GG +R PL+ +++++ + V+ EA A+GA++ A V
Sbjct: 141 LGAPIDRIIASGGGSRNPLLLQLLADALGRPVEV-PETAEATALGAALLAAV 191
Score = 36.9 bits (86), Expect = 0.030
Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 971 DKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022
+ I II GG +R PL+ +++++ + V+ EA A+GA++ A V
Sbjct: 141 LGAPIDRIIASGGGSRNPLLLQLLADALGRPVEV-PETAEATALGAALLAAV 191
>gnl|CDD|237621 PRK14139, PRK14139, heat shock protein GrpE; Provisional.
Length = 185
Score = 36.5 bits (85), Expect = 0.039
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 8/103 (7%)
Query: 563 EDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKES--EIIFLIFKLIKKFYKKF 620
++ + K + IE+ L+P+ DS+E D + E E + L K + ++K
Sbjct: 70 QEDVAKAHKFAIESFAESLLPVKDSLEAALA--DESGDLEKLREGVELTLKQLTSAFEKG 127
Query: 621 NIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663
+ +I+ G F+P H+AI + P + N+ VAVL G
Sbjct: 128 RVVEINPVGEKFDPHQHQAISMVPA----EQEPNTVVAVLQKG 166
>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like
D-xylulose kinases; a subgroup of the FGGY family of
carbohydrate kinases. This subgroup is predominantly
composed of bacterial D-xylulose kinases (XK, also known
as xylulokinase; EC 2.7.1.17), which catalyze the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. D-xylulose has been used as a source of carbon
and energy by a variety of microorganisms. Some
uncharacterized sequences are also included in this
subgroup. The prototypical member of this CD is
Escherichia coli xylulokinase (EcXK), which exists as a
dimer. Each monomer consists of two large domains
separated by an open cleft that forms an active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain. The presence of Mg2+ or Mn2+
is required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 482
Score = 36.3 bits (85), Expect = 0.090
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 39/167 (23%)
Query: 250 GVDLS-GDSLA-MQRLKEAAEKAKIELSNAEQTDIN------LPYIT------------- 288
GV LS G SL + + + L+ AEQ LPY++
Sbjct: 293 GVTLSAGGSLKWFRDTFGPDDSYEELLAEAEQVPPGSEGLLFLPYLSGERTPHNDPNARG 352
Query: 289 -----ADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGG 343
+ HL TR+ LE ++ SL+ L + + I II +GG
Sbjct: 353 AFIGLTLSHTRAHL----TRAVLEG-----VAFSLRDSLEILRELGV---PIDRIIAIGG 400
Query: 344 QTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDV 390
R PL ++ ++ V + +E A+GA++ A V +G V
Sbjct: 401 GARSPLWLQIQADVLGLPVDT-LKGEEGPALGAAILAAVGAGWYPSV 446
Score = 36.3 bits (85), Expect = 0.090
Identities = 40/167 (23%), Positives = 64/167 (38%), Gaps = 39/167 (23%)
Query: 890 GVDLS-GDSLA-MQRLKEAAEKAKIELSNAEQTDIN------LPYIT------------- 928
GV LS G SL + + + L+ AEQ LPY++
Sbjct: 293 GVTLSAGGSLKWFRDTFGPDDSYEELLAEAEQVPPGSEGLLFLPYLSGERTPHNDPNARG 352
Query: 929 -----ADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGG 983
+ HL TR+ LE ++ SL+ L + + I II +GG
Sbjct: 353 AFIGLTLSHTRAHL----TRAVLEG-----VAFSLRDSLEILRELGV---PIDRIIAIGG 400
Query: 984 QTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDV 1030
R PL ++ ++ V + +E A+GA++ A V +G V
Sbjct: 401 GARSPLWLQIQADVLGLPVDT-LKGEEGPALGAAILAAVGAGWYPSV 446
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 35.7 bits (83), Expect = 0.13
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 118 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 177
A + M+ E + +++ I P Y S + V I++ P A
Sbjct: 9 AYLAPIMRRYLEGVEDA-LKERGIKAPLYVMQSD-GGLMSIEEARRKPVETILSGPAAGV 66
Query: 178 LAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGE 214
+ IVV D+GG + D+S+I +DGE
Sbjct: 67 VGAAYTLAGLKNAIVV-DMGGTSTDVSLI----IDGE 98
Score = 35.7 bits (83), Expect = 0.13
Identities = 23/97 (23%), Positives = 38/97 (39%), Gaps = 7/97 (7%)
Query: 758 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 817
A + M+ E + +++ I P Y S + V I++ P A
Sbjct: 9 AYLAPIMRRYLEGVEDA-LKERGIKAPLYVMQSD-GGLMSIEEARRKPVETILSGPAAGV 66
Query: 818 LAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGE 854
+ IVV D+GG + D+S+I +DGE
Sbjct: 67 VGAAYTLAGLKNAIVV-DMGGTSTDVSLI----IDGE 98
>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like
proteins; a subgroup of the FGGY family of carbohydrate
kinases. This subgroup is composed of uncharacterized
bacterial and archaeal xylulose kinases-like proteins
with similarity to bacterial D-xylulose kinases (XK,
also known as xylulokinase; EC 2.7.1.17), which catalyze
the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+
is required for catalytic activity. D-XK exists as a
dimer with an active site that lies at the interface
between the N- and C-terminal domains. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. Members of this subgroup belong to
the FGGY family of carbohydrate kinases.
Length = 492
Score = 35.6 bits (83), Expect = 0.19
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 389
K+S ++ VGG + L ++ ++ V N A ++G ++ A V GV D
Sbjct: 396 KVSRVVAVGGGAKSRLWMQIKADVLGLPVVTPENTVGA-SLGDALLAAVAVGVYDD 450
Score = 35.6 bits (83), Expect = 0.19
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 1/56 (1%)
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 1029
K+S ++ VGG + L ++ ++ V N A ++G ++ A V GV D
Sbjct: 396 KVSRVVAVGGGAKSRLWMQIKADVLGLPVVTPENTVGA-SLGDALLAAVAVGVYDD 450
>gnl|CDD|172637 PRK14148, PRK14148, heat shock protein GrpE; Provisional.
Length = 195
Score = 33.6 bits (76), Expect = 0.36
Identities = 38/148 (25%), Positives = 65/148 (43%), Gaps = 22/148 (14%)
Query: 504 SSGGLSEIEIENMIKDA-----ELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKE 558
+SG L E+ +E ++ A EL D+ +E ++ K E + +K
Sbjct: 29 ASGALEELSVEEQLERAKDTIKELEDSCDQFKDEALRAKAE------------MENIRKR 76
Query: 559 TDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFD--SNQTKESEIIFLIFKLIKKF 616
+ D RK IE EL+P+ DS+E K+ E I L K++
Sbjct: 77 AERDVSNARKFG---IEKFAKELLPVIDSIEQALKHEVKLEEAIAMKEGIELTAKMLVDI 133
Query: 617 YKKFNIKQISETGVLFNPDIHEAIGIYP 644
KK ++++ G F+P++HEA+ + P
Sbjct: 134 LKKNGVEELDPKGEKFDPNLHEAMAMIP 161
>gnl|CDD|233811 TIGR02289, M3_not_pepF, oligoendopeptidase, M3 family. This family
consists of probable oligoendopeptidases in the M3
family, related to lactococcal PepF and group B
streptococcal PepB (TIGR00181) but in a distinct clade
with considerable sequence differences. The likely
substrate is small peptides and not whole proteins, as
with PepF, but members are not characterized and the
activity profile may differ. Several bacteria have both
a member of this family and a member of the PepF family.
Length = 549
Score = 34.3 bits (79), Expect = 0.47
Identities = 30/131 (22%), Positives = 60/131 (45%), Gaps = 26/131 (19%)
Query: 520 AELNSELDKKFEELVKCKNEQIIILE-EKFCSFVLETKKETDYDEDKIRKLKEIVIENII 578
AE+ ELD+ ++ELVK + + L + + + K TDY+ + + K + E+++
Sbjct: 173 AEVEEELDRIYDELVKVRTKIAKNLGFSNYVDYGYKLKNRTDYNAEDVYKYR----ESVL 228
Query: 579 IELIPIT-------------DSMEMFAKNF---DSNQTKESEIIFLIFKLIKKFYKKFNI 622
++P+T + + + ++F D N ++ F++ K KK YK+ +
Sbjct: 229 KYVVPLTTELRKRQQKRLGIEKLRPWDESFVFPDGNPKPFGDVDFIVEK-AKKMYKELS- 286
Query: 623 KQISETGVLFN 633
E FN
Sbjct: 287 ---LEFDEFFN 294
>gnl|CDD|172640 PRK14151, PRK14151, heat shock protein GrpE; Provisional.
Length = 176
Score = 33.2 bits (76), Expect = 0.48
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 563 EDKIRKLKEIVIENIIIELIPITDSMEM---FAKNFDSNQTKESEIIFLIFKLIKKFYKK 619
E + K + +E +L+P+ DS+E + D E + L K+ + K+
Sbjct: 58 EQDVEKAHKFALEKFAGDLLPVVDSLERGLELSSADDEAIKPMREGVELTLKMFQDTLKR 117
Query: 620 FNIKQISETGVLFNPDIHEAI 640
+ ++ + G FNP+ H+A+
Sbjct: 118 YQLEAVDPHGEPFNPEHHQAM 138
>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate
transport and metabolism].
Length = 502
Score = 34.3 bits (79), Expect = 0.50
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 386
S + +VGG R PL +++++ V + GA++ A L G+
Sbjct: 401 PPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGI 453
Score = 34.3 bits (79), Expect = 0.50
Identities = 13/53 (24%), Positives = 24/53 (45%)
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV 1026
S + +VGG R PL +++++ V + GA++ A L G+
Sbjct: 401 PPSRVRVVGGGARSPLWLQILADALGLPVVVPEVEEAGALGGAALAAAALGGI 453
>gnl|CDD|184546 PRK14163, PRK14163, heat shock protein GrpE; Provisional.
Length = 214
Score = 32.8 bits (74), Expect = 0.85
Identities = 29/108 (26%), Positives = 51/108 (47%), Gaps = 21/108 (19%)
Query: 562 DEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYK--- 618
+ D++ +KEI + N++ EL+P+ D D + +E + FK + + +
Sbjct: 78 ERDRV-TVKEIAVANLLSELLPVLD---------DVGRAREHGELVGGFKSVAESLETTV 127
Query: 619 -KFNIKQISETGVLFNPDIHEAI--GIYPTFGKKKGTTNSCVAVLNNG 663
K ++Q + G F+P IHEA+ P T +CVA+L G
Sbjct: 128 AKLGLQQFGKEGEPFDPTIHEALMHSYAPDV-----TETTCVAILQPG 170
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 33.4 bits (77), Expect = 0.91
Identities = 44/214 (20%), Positives = 85/214 (39%), Gaps = 53/214 (24%)
Query: 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQF-EVL 220
AGL+V I+ EP A+ALA L + + + + D+GGGT DI++ + +G ++ V+
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEKELGVALIDIGGGTTDIAIYK----NGALRYTGVI 231
Query: 221 STNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ- 279
GD + + K E AE+ KI+ +A
Sbjct: 232 PVGGD----------HVTKDIAKGLKTP---------------FEEAERIKIKYGSALIS 266
Query: 280 ---TDINLPYITADKNGPKHLNVK----ITRSKLE---SLVEDLISKSLKPCEVALNDAK 329
+ + + + P+ + I +++E LV+ + KS P +
Sbjct: 267 LADDEETIEVPSVGSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHL------ 320
Query: 330 IDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
++L GG ++P + ++ F + V+
Sbjct: 321 -----PGGVVLTGGGAQLPGIVELAERIFGRPVR 349
Score = 33.4 bits (77), Expect = 0.91
Identities = 44/214 (20%), Positives = 85/214 (39%), Gaps = 53/214 (24%)
Query: 802 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQF-EVL 860
AGL+V I+ EP A+ALA L + + + + D+GGGT DI++ + +G ++ V+
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEKELGVALIDIGGGTTDIAIYK----NGALRYTGVI 231
Query: 861 STNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQ- 919
GD + + K E AE+ KI+ +A
Sbjct: 232 PVGGD----------HVTKDIAKGLKTP---------------FEEAERIKIKYGSALIS 266
Query: 920 ---TDINLPYITADKNGPKHLNVK----ITRSKLE---SLVEDLISKSLKPCEVALNDAK 969
+ + + + P+ + I +++E LV+ + KS P +
Sbjct: 267 LADDEETIEVPSVGSDIPRQVTRSELSEIIEARVEEILELVKAELRKSGLPNHL------ 320
Query: 970 IDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 1003
++L GG ++P + ++ F + V+
Sbjct: 321 -----PGGVVLTGGGAQLPGIVELAERIFGRPVR 349
>gnl|CDD|237194 PRK12765, PRK12765, flagellar capping protein; Provisional.
Length = 595
Score = 33.3 bits (76), Expect = 1.0
Identities = 22/106 (20%), Positives = 47/106 (44%), Gaps = 18/106 (16%)
Query: 1119 LDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENM--------IKDAELNSE----- 1165
+++ GI V G +++K SGG +IEI+ + D +N +
Sbjct: 454 INSAGIEGVKVSVDSKGFR--LVLKGSGG-EDIEIKGDATALKELGLSDTTINGKSIETK 510
Query: 1166 -LDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSI 1210
+ K ++ ++ D +++ ++L +E +T KES ++ I
Sbjct: 511 GIFSKLKDTLQEMTGKDGSLTKYDESLTNEIKSLT-TSKESTQELI 555
>gnl|CDD|212686 cd11736, HSPA12B_like_NBD, Nucleotide-binding domain of HSPA12B and
similar proteins. Human HSPA12B (also known as 70-kDa
heat shock protein-12B, chromosome 20 open reading frame
60/C20orf60, dJ1009E24.2; the gene encoding HSPA12B maps
to 20p13) belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). No
co-chaperones have yet been identified for HSPA12B.
HSPA12B is predominantly expressed in endothelial cells,
is required for angiogenesis, and may interact with
known angiogenesis mediators. HSPA12B may be important
for host defense in microglia-mediated immune response.
HSPA12B expression is up-regulated in lipopolysaccharide
(LPS)-induced inflammatory response in the spinal cord,
and mostly located in active microglia; this induced
expression may be regulated by activation of MAPK-p38,
ERK1/2 and SAPK/JNK signaling pathways. Overexpression
of HSPA12B also protects against LPS-induced cardiac
dysfunction and involves the preserved activation of the
PI3K/Akt signaling pathway.
Length = 468
Score = 33.0 bits (75), Expect = 1.1
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 121 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL------EVLRIINEPT 174
L+++K + + L + + V+TVPA + +Q ++A +AGL E L I EP
Sbjct: 125 LQELKDQSPSLLEKNEVRWVLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPE 184
Query: 175 AAAL 178
AA++
Sbjct: 185 AASI 188
Score = 33.0 bits (75), Expect = 1.1
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 6/64 (9%)
Query: 761 LKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGL------EVLRIINEPT 814
L+++K + + L + + V+TVPA + +Q ++A +AGL E L I EP
Sbjct: 125 LQELKDQSPSLLEKNEVRWVLTVPAIWKQPAKQFMREAAYLAGLVSPENPEQLLIALEPE 184
Query: 815 AAAL 818
AA++
Sbjct: 185 AASI 188
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 31.8 bits (72), Expect = 1.4
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 575 ENIIIELIPITDSMEMFAKNFDSNQTKES-EIIFLIFKLIKKFYKKFNIKQI-SETGVLF 632
E++I+E++P D+ME + D E I + ++ KKF + + +E G F
Sbjct: 90 ESLILEILPAVDNMERALDHADEESMSAIIEGIRMTLSMLLSTLKKFGVTPVEAEKGTPF 149
Query: 633 NPDIHEAIG 641
+P H+A+
Sbjct: 150 DPAYHQAMC 158
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 32.2 bits (74), Expect = 2.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 329 KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 382
KID KI ++I GG+T ++ + E VK DI D V + AS
Sbjct: 557 KIDPDKIRDVIGPGGKT----IKAITEET---GVKIDIEDDGTVKIAASDGESA 603
Score = 32.2 bits (74), Expect = 2.1
Identities = 18/54 (33%), Positives = 25/54 (46%), Gaps = 7/54 (12%)
Query: 969 KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGV 1022
KID KI ++I GG+T ++ + E VK DI D V + AS
Sbjct: 557 KIDPDKIRDVIGPGGKT----IKAITEET---GVKIDIEDDGTVKIAASDGESA 603
>gnl|CDD|143379 cd07874, STKc_JNK3, Catalytic domain of the Serine/Threonine
Kinase, c-Jun N-terminal Kinase 3. Serine/Threonine
Kinases (STKs), c-Jun N-terminal kinase 3 (JNK3)
subfamily, catalytic (c) domain. STKs catalyze the
transfer of the gamma-phosphoryl group from ATP to
serine/threonine residues on protein substrates. The
JNK3 subfamily is part of a larger superfamily that
includes the catalytic domains of other protein STKs,
protein tyrosine kinases, RIO kinases, aminoglycoside
phosphotransferase, choline kinase, and phosphoinositide
3-kinase. JNKs are mitogen-activated protein kinases
(MAPKs) that are involved in many stress-activated
responses including those during inflammation,
neurodegeneration, apoptosis, and persistent pain
sensitization, among others. Vetebrates harbor three
different JNK genes (Jnk1, Jnk2, and Jnk3). JNK3 is
expressed primarily in the brain, and to a lesser extent
in the heart and testis. Mice deficient in Jnk3 are
protected against kainic acid-induced seizures, stroke,
sciatic axotomy neural death, and neuronal death due to
NGF deprivation, oxidative stress, or exposure to
beta-amyloid peptide. This suggests that JNK3 may play
roles in the pathogenesis of these diseases.
Length = 355
Score = 32.0 bits (72), Expect = 2.2
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 728 KMVPYKIV--AADNGDAWVEVKDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPA 785
+MV +KI+ D D W +V +Q P E +KK++ T ++ + + A +T P
Sbjct: 210 EMVRHKILFPGRDYIDQWNKVIEQLGTP---CPEFMKKLQPTVRNYVENRPKYAGLTFPK 266
Query: 786 YFNDSQRQATKDAGKI 801
F DS A + K+
Sbjct: 267 LFPDSLFPADSEHNKL 282
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 32.0 bits (73), Expect = 2.5
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 1149 SEIEI-ENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIE 1207
E+E E +K E ELDK FEEL + + + ++K L++ K ++EE E +
Sbjct: 612 KELEREEKELKKLE--EELDKAFEELAETEKRLEE----LRKELEELEKKYSEEEYEELR 665
Query: 1208 KSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
+ L + G EL + E + + ++K
Sbjct: 666 EEYLELSRELAGLRAEL--EELEKRREEIKKTLEK 698
>gnl|CDD|223326 COG0248, GppA, Exopolyphosphatase [Nucleotide transport and
metabolism / Inorganic ion transport and metabolism].
Length = 492
Score = 31.1 bits (71), Expect = 3.9
Identities = 33/181 (18%), Positives = 59/181 (32%), Gaps = 51/181 (28%)
Query: 160 KIAGLEVLRIINEPTAAALAY-----GLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGE 214
K GL + +I+ A L Y L +K D +V D+GGG+ E+ D
Sbjct: 99 KELGLPI-EVISGEEEARLIYLGVASTLPRKGD---GLVIDIGGGS-----TELVLGDNF 149
Query: 215 TQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIEL 274
++S + + F D ++ + +A + + EL
Sbjct: 150 EIGLLIS-----------LPLGCVRLTERFF--------PDDPISEENFAKARDAVREEL 190
Query: 275 SNAEQTDI---------------NLPYITAD-KNGPKHL--NVKITRSKLESLVEDLISK 316
+ L + + P + +IT +LE L+E LI
Sbjct: 191 EEIAKEYRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRVLHGYEITAEELEKLLERLIRM 250
Query: 317 S 317
+
Sbjct: 251 T 251
Score = 31.1 bits (71), Expect = 3.9
Identities = 33/181 (18%), Positives = 59/181 (32%), Gaps = 51/181 (28%)
Query: 800 KIAGLEVLRIINEPTAAALAY-----GLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGE 854
K GL + +I+ A L Y L +K D +V D+GGG+ E+ D
Sbjct: 99 KELGLPI-EVISGEEEARLIYLGVASTLPRKGD---GLVIDIGGGS-----TELVLGDNF 149
Query: 855 TQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIEL 914
++S + + F D ++ + +A + + EL
Sbjct: 150 EIGLLIS-----------LPLGCVRLTERFF--------PDDPISEENFAKARDAVREEL 190
Query: 915 SNAEQTDI---------------NLPYITAD-KNGPKHL--NVKITRSKLESLVEDLISK 956
+ L + + P + +IT +LE L+E LI
Sbjct: 191 EEIAKEYRIAGWAGLVGTSGTIRALAKLHMAQGSYPLRVLHGYEITAEELEKLLERLIRM 250
Query: 957 S 957
+
Sbjct: 251 T 251
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 30.5 bits (69), Expect = 5.3
Identities = 40/211 (18%), Positives = 74/211 (35%), Gaps = 48/211 (22%)
Query: 168 RIINEPTAAALAYGLDK---KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNG 224
++ E A LD+ D +++V+ D+GGGT D+ V + +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVI-DIGGGTTDVVVFDNGKPVES--------SS 194
Query: 225 DTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINL 284
+ G + + E E G+DLS D + L+ K + +
Sbjct: 195 GSLELG---VSDLYEAIAKELNKEYGIDLS-DEEIEEILRNGKIKNYGKEEDIT------ 244
Query: 285 PYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQ 344
+I E E ++++ + S + ++ILVGG
Sbjct: 245 ---------------EIIEEAAEEYAEKILNE---------LKEFLGLSDVDKVILVGGG 280
Query: 345 TRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 375
L+++ + E F + V +P A A G
Sbjct: 281 A--ILLKEYLKELFPENVVLVDDPQFANARG 309
Score = 30.5 bits (69), Expect = 5.3
Identities = 40/211 (18%), Positives = 74/211 (35%), Gaps = 48/211 (22%)
Query: 808 RIINEPTAAALAYGLDK---KPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNG 864
++ E A LD+ D +++V+ D+GGGT D+ V + +
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVI-DIGGGTTDVVVFDNGKPVES--------SS 194
Query: 865 DTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINL 924
+ G + + E E G+DLS D + L+ K + +
Sbjct: 195 GSLELG---VSDLYEAIAKELNKEYGIDLS-DEEIEEILRNGKIKNYGKEEDIT------ 244
Query: 925 PYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQ 984
+I E E ++++ + S + ++ILVGG
Sbjct: 245 ---------------EIIEEAAEEYAEKILNE---------LKEFLGLSDVDKVILVGGG 280
Query: 985 TRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 1015
L+++ + E F + V +P A A G
Sbjct: 281 A--ILLKEYLKELFPENVVLVDDPQFANARG 309
>gnl|CDD|227038 COG4694, COG4694, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 758
Score = 30.7 bits (69), Expect = 6.2
Identities = 19/96 (19%), Positives = 38/96 (39%), Gaps = 9/96 (9%)
Query: 513 IENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEI 572
+++ K ++KK E+ +K + + ++ E K+E D+ D R L +
Sbjct: 114 NDDLEKIESKKESINKKNEKKIK-NEASLQVKTQR------EEKEEKDFIADCWRNLYKK 166
Query: 573 VIENI--IIELIPITDSMEMFAKNFDSNQTKESEII 606
E +E K F++ + SEI+
Sbjct: 167 NEERFKEYLENFKRKKFKRKILKEFENAKINASEIV 202
>gnl|CDD|236126 PRK07899, rpsA, 30S ribosomal protein S1; Reviewed.
Length = 486
Score = 30.4 bits (69), Expect = 6.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 359 EKEVKKDINPDEAVAVGASVQAGVL 383
E +K D++P+E V VG V+A VL
Sbjct: 67 ELSIKHDVDPNEVVEVGDEVEALVL 91
Score = 30.4 bits (69), Expect = 6.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Query: 999 EKEVKKDINPDEAVAVGASVQAGVL 1023
E +K D++P+E V VG V+A VL
Sbjct: 67 ELSIKHDVDPNEVVEVGDEVEALVL 91
>gnl|CDD|237625 PRK14147, PRK14147, heat shock protein GrpE; Provisional.
Length = 172
Score = 29.5 bits (66), Expect = 6.9
Identities = 22/96 (22%), Positives = 41/96 (42%), Gaps = 3/96 (3%)
Query: 556 KKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKK 615
+K D ++ RK E ++ EL+P+ DS++ + + + + L +K + K
Sbjct: 52 RKRIARDVEQARKFAN---EKLLGELLPVFDSLDAGLTAAGTEPSPLRDGLELTYKQLLK 108
Query: 616 FYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKG 651
+ + G FNP+ H+AI G G
Sbjct: 109 VAADNGLTLLDPVGQPFNPEHHQAISQGEAEGVAPG 144
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 29.8 bits (67), Expect = 7.6
Identities = 25/158 (15%), Positives = 66/158 (41%), Gaps = 3/158 (1%)
Query: 1085 ERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKS 1144
R K S+ + + K D+ + +E++F+ + + ++ + ++
Sbjct: 48 SRLKKSKGRGIVKGDIEIEKDEGKKKTYVEITFENNKGKLKLRLIEESRELTKKKGKKVK 107
Query: 1145 SGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKE 1204
L +EI+ + + + + DK+ L+ + K + E + +E ++
Sbjct: 108 KSILEIVEIDELQEFIDELLKSDKEILPLLLYLGQERLEE---LKFKRKEKKERLEELEK 164
Query: 1205 SIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
+E+ +LL K + + KK E+L + E ++++
Sbjct: 165 ELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEE 202
>gnl|CDD|132722 cd02735, RNAP_I_Rpa1_C, Largest subunit (Rpa1) of Eukaryotic RNA
polymerase I (RNAP I), C-terminal domain. RNA
polymerase I (RNAP I) is a multi-subunit protein complex
responsible for the synthesis of rRNA precursor. It
consists of at least 14 different subunits, and the
largest one is homologous to subunit Rpb1 of yeast RNAP
II and subunit beta' of bacterial RNAP. Rpa1 is also
known as Rpa190 in yeast. Structure studies suggest that
different RNAP complexes share a similar crab-claw-shape
structure. The C-terminal domain of Rpb1, the largest
subunit of RNAP II, makes up part of the foot and jaw
structures of RNAP II. The similarity between this
domain and the C-terminal domain of Rpb1, its
counterpart in RNAP II, suggests a similar functional
and structural role.
Length = 309
Score = 29.9 bits (68), Expect = 9.4
Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 19/166 (11%)
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELN----SELDKKFE--ELVKCK 537
IL +K+ KT S+ + G S E + K L+ S++ +K E E++K
Sbjct: 53 ILMTASKNIKT---PSMTLPLKNGKSAERAETLKK--RLSRVTLSDVVEKVEVTEILKTI 107
Query: 538 NEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDS 597
L K+C ++ + + ++++ +I IP + +
Sbjct: 108 ERVFKKLLGKWCEVTIKLPLSSPK-LLLLSIVEKL-ARKAVIREIP---GITRCFVVEED 162
Query: 598 NQTKESEIIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIY 643
K ++ + +K +I ++ ++ DIH + Y
Sbjct: 163 KGGKTKYLVITEGVNLAALWKFSDILDVNR---IYTNDIHAMLNTY 205
>gnl|CDD|212661 cd07777, FGGY_SHK_like, sedoheptulokinase-like proteins; a
subfamily of the FGGY family of carbohydrate kinases.
This subfamily is predominantly composed of
uncharacterized bacterial and eukaryotic proteins with
similarity to human sedoheptulokinase (SHK, also known
as D-altro-heptulose or heptulokinase, EC 2.7.1.14)
encoded by the carbohydrate kinase-like (CARKL/SHPK)
gene. SHK catalyzes the ATP-dependent phosphorylation
of sedoheptulose to produce sedoheptulose 7-phosphate
and ADP. The presence of Mg2+ or Mn2+ might be required
for catalytic activity. Members of this subfamily
belong to the FGGY family of carbohydrate kinases, the
monomers of which contain two large domains, which are
separated by a deep cleft that forms the active site.
This model includes both the N-terminal domain, which
adopts a ribonuclease H-like fold, and the structurally
related C-terminal domain.
Length = 448
Score = 30.0 bits (68), Expect = 9.5
Identities = 8/28 (28%), Positives = 18/28 (64%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENS 31
++GID+GTT+ +L++ +V+ +
Sbjct: 2 YVLGIDIGTTSVKACLLDSETKEVLASQ 29
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.313 0.133 0.358
Gapped
Lambda K H
0.267 0.0849 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 63,152,398
Number of extensions: 6588267
Number of successful extensions: 6742
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6330
Number of HSP's successfully gapped: 328
Length of query: 1242
Length of database: 10,937,602
Length adjustment: 108
Effective length of query: 1134
Effective length of database: 6,147,370
Effective search space: 6971117580
Effective search space used: 6971117580
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 65 (28.6 bits)