RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5911
(1242 letters)
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 1036 bits (2681), Expect = 0.0
Identities = 389/592 (65%), Positives = 498/592 (84%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP NTL+AI
Sbjct: 10 GTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ DE VQ+D+ ++P+KI+AADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK +R
Sbjct: 130 YLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK + G
Sbjct: 190 IAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLESLV
Sbjct: 250 IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+++S++P +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDE 369
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
AVA+GA+VQ GVL+G VKDVLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTA
Sbjct: 370 AVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTA 429
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
EDNQ++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AK
Sbjct: 430 EDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAK 489
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKN 1190
DK +GKEQ I IK+S GL+E EI+ M++DAE N+E D+KF+ELV+ +N+ D + +K
Sbjct: 490 DKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGDHLLHSTRKQ 549
Query: 1191 LKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
+++ K+ ++K +IE +++ LE +KG+D I+ ++L ++S+ +++
Sbjct: 550 VEEAGDKLPADDKTAIESALTALETALKGEDKAAIEAKMQELAQVSQKLMEI 601
Score = 1007 bits (2607), Expect = 0.0
Identities = 392/616 (63%), Positives = 500/616 (81%), Gaps = 13/616 (2%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGR++ DE VQ + ++P+KI+AADNGDAWVEVK +K+APPQISAE+LKK
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKK 122
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE +L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K +R I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+
Sbjct: 183 KGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK + G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR
Sbjct: 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTR 302
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+KLESLVEDL+++S++P +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +
Sbjct: 303 AKLESLVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPR 362
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
KD+NPDEAVA+GA+VQ GVL+G VKDVLLLDVTPL+LGIETMGGVMT LI KNTTIPT+
Sbjct: 363 KDVNPDEAVAIGAAVQGGVLTGDVKDVLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKH 422
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+QVFSTAEDNQ++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+G
Sbjct: 423 SQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADG 482
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIII 543
IL+V+AKDK +GKEQ I IK+S GL+E EI+ M++DAE N+E D+KF+ELV+ +N+
Sbjct: 483 ILHVSAKDKNSGKEQKITIKASSGLNEDEIQKMVRDAEANAEADRKFDELVQTRNQGD-- 540
Query: 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKES 603
+ T+K+ + DK+ + IE+ + L +++ ++ + + K
Sbjct: 541 ------HLLHSTRKQVEEAGDKLPADDKTAIESALTAL---ETALK--GEDKAAIEAKMQ 589
Query: 604 EIIFLIFKLIKKFYKK 619
E+ + KL++ ++
Sbjct: 590 ELAQVSQKLMEIAQQQ 605
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 915 bits (2367), Expect = 0.0
Identities = 315/536 (58%), Positives = 397/536 (74%), Gaps = 31/536 (5%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVAVL G+ +VI N EG RTTPSVV + R+ VG AKRQAITNP
Sbjct: 3 KIIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERL-VGEVAKRQAITNP 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
N T+ +IKR +G Y VE++ K+ P +ISA IL+
Sbjct: 62 N-TIISIKRHMGTDY------------------------KVEIEGKQYTPQEISAIILQY 96
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+KS AE +L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 97 LKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLD 156
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K+ +D+ I+VYDLGGGTFD+S++E+ G+ FEV +T GD LGG+DFD II++L+
Sbjct: 157 KE-EDQTILVYDLGGGTFDVSILEL----GDGVFEVKATAGDNHLGGDDFDQVIIDYLVN 211
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
+FK E+G+DLS D +A+QRLK+AAEKAK ELS QT I+LP+I+A++NGP HL + +TR
Sbjct: 212 QFKQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTR 271
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+K E L L+ +++ P AL DA + + I ++ILVGG TR+P VQ+ + KE
Sbjct: 272 AKFEELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPH 331
Query: 364 KDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRK 423
K +NPDE VA+GA++Q GV++G VKDV+LLDVTPL+LGIETMGGV T LIE+NTTIPT K
Sbjct: 332 KGVNPDEVVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSK 391
Query: 424 TQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANG 483
+QVF+TA DNQT+V IH LQGER A+ NKSLG+F L I PAPRGVPQIEV+FD+DANG
Sbjct: 392 SQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANG 451
Query: 484 ILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
I++V AKD T KEQSI IKSS GLSE EI+ MIK+AE N+E D+K +E + +NE
Sbjct: 452 IVHVRAKDLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNE 507
Score = 897 bits (2320), Expect = 0.0
Identities = 309/531 (58%), Positives = 391/531 (73%), Gaps = 31/531 (5%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVAVL G+ +VI N EG RTTPSVV + R+ VG AKRQAITNPN T+ +I
Sbjct: 10 GTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERL-VGEVAKRQAITNPN-TIISI 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KR +G Y VE++ + P +ISA IL+ +KS AE
Sbjct: 68 KRHMGTDY------------------------KVEIEGKQYTPQEISAIILQYLKSYAED 103
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK+ +D+
Sbjct: 104 YLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGLDKE-EDQT 162
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I+VYDLGGGTFD+S++E+ G+ FEV +T GD LGG+DFD II++L+ +FK E+G
Sbjct: 163 ILVYDLGGGTFDVSILEL----GDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQFKQEHG 218
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DLS D +A+QRLK+AAEKAK ELS QT I+LP+I+A++NGP HL + +TR+K E L
Sbjct: 219 IDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAKFEELS 278
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
L+ +++ P AL DA + + I ++ILVGG TR+P VQ+ + KE K +NPDE
Sbjct: 279 AHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKRELGKEPHKGVNPDE 338
Query: 1011 AVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
VA+GA++Q GV++G VKDV+LLDVTPL+LGIETMGGV T LIE+NTTIPT K+QVF+TA
Sbjct: 339 VVAIGAAIQGGVIAGEVKDVVLLDVTPLSLGIETMGGVFTKLIERNTTIPTSKSQVFTTA 398
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAK 1130
DNQT+V IH LQGER A+ NKSLG+F L I PAPRGVPQIEV+FD+DANGI++V AK
Sbjct: 399 ADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDIDANGIVHVRAK 458
Query: 1131 DKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181
D T KEQSI IKSS GLSE EI+ MIK+AE N+E D+K +E + +NEAD
Sbjct: 459 DLGTNKEQSITIKSSSGLSEEEIQRMIKEAEENAEADRKRKEAAELRNEAD 509
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 864 bits (2234), Expect = 0.0
Identities = 288/548 (52%), Positives = 372/548 (67%), Gaps = 19/548 (3%)
Query: 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAIT 61
+GIDLGTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q
Sbjct: 3 KGPAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVAM 61
Query: 62 NPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVA-ADNGDAWVEVK--DKKLAPPQISA 118
NP NT++ KRLIGR++ D +VQ+ +K P+ +V A VE K K P ++S+
Sbjct: 62 NPTNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSS 121
Query: 119 EILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 178
+L KMK AE +L + + AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+
Sbjct: 122 MVLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAI 181
Query: 179 AYGLDKKPD-DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRI 237
AYGLDKK +R ++++DLGGGTFD+S++ I FEV ST GDT LGGEDFD R+
Sbjct: 182 AYGLDKKVGAERNVLIFDLGGGTFDVSILTI----AAGIFEVKSTAGDTHLGGEDFDNRM 237
Query: 238 INHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHL 297
+NH I EFK ++ D+S + A++RL+ A E+AK LS++ Q I + +
Sbjct: 238 VNHFIAEFKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DF 293
Query: 298 NVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEF 357
ITR++ E L DL +L P E AL DAK+DKS+I +I+LVGG TR+P +QK++ +F
Sbjct: 294 YTSITRARFEELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDF 353
Query: 358 FE-KEVKKDINPDEAVAVGASVQAGVLSG----VVKDVLLLDVTPLTLGIETMGGVMTPL 412
F KE+ K INPDEAVA GA+VQA +LSG V+D+LLLDVTPL+LGIET GGVMT L
Sbjct: 354 FNGKELNKSINPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVL 413
Query: 413 IEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQ 472
I++NTTIPT++TQ F+T DNQ V I +GER N LGKF+L I PAPRGVPQ
Sbjct: 414 IKRNTTIPTKQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQ 473
Query: 473 IEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKKFE 531
IEV+FD+DANGILNV+A DK TGKE I I + G LS+ +IE M+++AE D+K
Sbjct: 474 IEVTFDIDANGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQR 533
Query: 532 ELVKCKNE 539
+ V KN
Sbjct: 534 DKVSSKNS 541
Score = 859 bits (2223), Expect = 0.0
Identities = 286/552 (51%), Positives = 373/552 (67%), Gaps = 19/552 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q NP NT++
Sbjct: 12 GTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVAMNPTNTVFDA 70
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVA-ADNGDAWVEVKDQ--YCAPPQISAEILKKMKST 767
KRLIGR++ D +VQ D+K P+ +V A VE K + P ++S+ +L KMK
Sbjct: 71 KRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKEI 130
Query: 768 AETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPD 827
AE +L + + AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+AYGLDKK
Sbjct: 131 AEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKKVG 190
Query: 828 -DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFK 886
+R ++++DLGGGTFD+S++ I FEV ST GDT LGGEDFD R++NH I EFK
Sbjct: 191 AERNVLIFDLGGGTFDVSILTI----AAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 246
Query: 887 IENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 946
++ D+S + A++RL+ A E+AK LS++ Q I + + ITR++
Sbjct: 247 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGI----DFYTSITRARF 302
Query: 947 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFE-KEVKKD 1005
E L DL +L P E AL DAK+DKS+I +I+LVGG TR+P +QK++ +FF KE+ K
Sbjct: 303 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 362
Query: 1006 INPDEAVAVGASVQAGVLSG----VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPT 1061
INPDEAVA GA+VQA +LSG V+D+LLLDVTPL+LGIET GGVMT LI++NTTIPT
Sbjct: 363 INPDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPT 422
Query: 1062 RKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDA 1121
++TQ F+T DNQ V I +GER N LGKF+L I PAPRGVPQIEV+FD+DA
Sbjct: 423 KQTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDA 482
Query: 1122 NGILNVTAKDKKTGKEQSIIIKSSGG-LSEIEIENMIKDAELNSELDKKFEELVKCKNEA 1180
NGILNV+A DK TGKE I I + G LS+ +IE M+++AE D+K + V KN
Sbjct: 483 NGILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSL 542
Query: 1181 DSTISIVKKNLK 1192
+S +K ++
Sbjct: 543 ESYAFNMKATVE 554
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein
folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 769 bits (1989), Expect = 0.0
Identities = 149/619 (24%), Positives = 272/619 (43%), Gaps = 42/619 (6%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G NS +AV N ++ N R+TPSVVG+ NR + G K + +N NT+ +
Sbjct: 10 GNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNIKNTVANL 68
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV----KDQYCAPPQISAEILKKMKS 766
KR+IG Y +++ K K+V D+ EV + + Q++A + K+K
Sbjct: 69 KRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFIDKVKD 128
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK- 825
T + I I VP ++ + QR DA +IAGL +RI+N+ TAA ++YG+ K
Sbjct: 129 TVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGIFKTD 188
Query: 826 -----PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINH 880
RI+ D+G ++ S++ + Q +VL T D GG DFD+ I H
Sbjct: 189 LPEGEEKPRIVAFVDIGHSSYTCSIMAF----KKGQLKVLGTACDKHFGGRDFDLAITEH 244
Query: 881 LIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVK 940
EFK + +D+ + A R+ AAEK K LS ++ + ++ +
Sbjct: 245 FADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVM----NDVDVSSQ 300
Query: 941 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 1000
++R +LE LV+ L+ + +P AL AK+ ++ + ++GG TR+P +++ +SE F K
Sbjct: 301 LSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAFGK 360
Query: 1001 EVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGIETMGGV----MTPLIE 1054
+ +N DEA+A GA+ + S V+ D+ P ++ V +
Sbjct: 361 PLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVFP 420
Query: 1055 KNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDIS--PAPRGVPQ 1112
++ P+ K + D + + + + + +++ + VP
Sbjct: 421 AGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP- 477
Query: 1113 IEVSFDLDANGILNV----------TAKDKKTGKEQSIIIK-SSGGLSEIEIENMIKDAE 1161
+++ D +G+ + D KT K+ + I + GL ++ +I+
Sbjct: 478 VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKEN 537
Query: 1162 LNSELDKKFEELVKCKNEADSTISIVKKNLKDE-NTKITDEEKESIEKSISNLELLIKGD 1220
DK E KN + I ++ L++E +D EK ++ ++ E + +
Sbjct: 538 EMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYDE 597
Query: 1221 DIELIKKGNEDLLKISENI 1239
+ IK + ++
Sbjct: 598 GFDSIKAKYIAKYEELASL 616
Score = 755 bits (1951), Expect = 0.0
Identities = 149/647 (23%), Positives = 274/647 (42%), Gaps = 53/647 (8%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
G+DLG NS +AV N ++ N R+TPSVVG+ NR + G K + +N
Sbjct: 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYL-GETGKNKQTSNI 61
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAE 119
NT+ +KR+IG Y + K K+V D+ EV + + Q++A
Sbjct: 62 KNTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAM 121
Query: 120 ILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179
+ K+K T + I I VP ++ + QR DA +IAGL +RI+N+ TAA ++
Sbjct: 122 FIDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVS 181
Query: 180 YGLDKK------PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDF 233
YG+ K RI+ D+G ++ S++ + Q +VL T D GG DF
Sbjct: 182 YGIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAF----KKGQLKVLGTACDKHFGGRDF 237
Query: 234 DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNG 293
D+ I H EFK + +D+ + A R+ AAEK K LS ++ +
Sbjct: 238 DLAITEHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVM----N 293
Query: 294 PKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKM 353
++ +++R +LE LV+ L+ + +P AL AK+ ++ + ++GG TR+P +++
Sbjct: 294 DVDVSSQLSREELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQS 353
Query: 354 VSEFFEKEVKKDINPDEAVAVGASVQAGVLSGV--VKDVLLLDVTPLTLGIETMGGV--- 408
+SE F K + +N DEA+A GA+ + S V+ D+ P ++ V
Sbjct: 354 ISEAFGKPLSTTLNQDEAIAKGAAFICAIHSPTLRVRPFKFEDIHPYSVSYSWDKQVEDE 413
Query: 409 -MTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDIS--P 465
+ ++ P+ K + D + + + + + +++ +
Sbjct: 414 DHMEVFPAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPE 471
Query: 466 APRGVPQIEVSFDLDANGILNV----------TAKDKKTGKEQSIIIK-SSGGLSEIEIE 514
VP +++ D +G+ + D KT K+ + I + GL ++
Sbjct: 472 GQDSVP-VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLN 530
Query: 515 NMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKE-TDYDEDKIRKLKEIV 573
+I+ DK E KN LE ++ + + + ++
Sbjct: 531 ELIEKENEMLAQDKLVAETEDRKNT----LE----EYIYTLRGKLEEEYAPFASDAEKTK 582
Query: 574 IENIIIELIP-ITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKK 619
++ ++ + + D K + +E + + ++ K
Sbjct: 583 LQGMLNKAEEWLYDEGFDSIKAKYIAKYEELASLGN--IIRGRYLAK 627
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 732 bits (1892), Expect = 0.0
Identities = 270/381 (70%), Positives = 328/381 (86%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP
Sbjct: 3 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 62
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGR++ DE VQ + ++P+KI+AADNGDAWVEVK +K+APPQISAE+LKK
Sbjct: 63 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKK 122
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE +L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 123 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 182
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
K +R I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+
Sbjct: 183 KGTGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVE 242
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
EFK + G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR
Sbjct: 243 EFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTR 302
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+KLESLVEDL+++S++ +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +
Sbjct: 303 AKLESLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPR 362
Query: 364 KDINPDEAVAVGASVQAGVLS 384
KD+NPDEAVA+GA+VQ GVL+
Sbjct: 363 KDVNPDEAVAIGAAVQGGVLT 383
Score = 715 bits (1848), Expect = 0.0
Identities = 264/374 (70%), Positives = 321/374 (85%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP NTL+AI
Sbjct: 10 GTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAI 69
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ DE VQ+D+ ++P+KI+AADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 70 KRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 129
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI 830
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK +R
Sbjct: 130 YLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKGTGNRT 189
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK + G
Sbjct: 190 IAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKKDQG 249
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLESLV
Sbjct: 250 IDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLESLV 309
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
EDL+++S++ +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+NPDE
Sbjct: 310 EDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVNPDE 369
Query: 1011 AVAVGASVQAGVLS 1024
AVA+GA+VQ GVL+
Sbjct: 370 AVAIGAAVQGGVLT 383
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 607 bits (1569), Expect = 0.0
Identities = 201/387 (51%), Positives = 260/387 (67%), Gaps = 13/387 (3%)
Query: 2 YCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAIT 61
Y +IGIDLGTT SCVAV+ NGK +++ N +G R TPS V +T+D R+I G AK Q
Sbjct: 17 YGTVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLI-GDAAKNQVAA 75
Query: 62 NPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAW-VEVK--DKKLAPPQISA 118
NP NT++ IKRLIG KY D VQ +K +P+ +V D A V VK K P +IS
Sbjct: 76 NPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISG 135
Query: 119 EILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAAL 178
IL KMK AE +L K+ AV+TVPAYFND+QRQATKDAG IAGL VLRI+NEPTAAA+
Sbjct: 136 MILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAI 195
Query: 179 AYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRII 238
AYGLDK + I+VYDLGGGTFD+S++ I FEV +T+GDT LGGEDFD +I+
Sbjct: 196 AYGLDKSDKEHQIIVYDLGGGTFDVSLLSI----ENGVFEVQATSGDTHLGGEDFDYKIV 251
Query: 239 NHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLN 298
LI FK ++G+D+S ++ A+ +LK AEKAK LS+ T I + L+
Sbjct: 252 RQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDG----IDLS 307
Query: 299 VKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF 358
+TR+K E L DL K+LKP E L D+ ++K + +I+LVGG TR+P VQ+++ +F
Sbjct: 308 ETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLESYF 367
Query: 359 E-KEVKKDINPDEAVAVGASVQAGVLS 384
+ K+ K INPDEAVA GA+VQAGVLS
Sbjct: 368 DGKKASKGINPDEAVAYGAAVQAGVLS 394
Score = 594 bits (1534), Expect = 0.0
Identities = 200/390 (51%), Positives = 258/390 (66%), Gaps = 19/390 (4%)
Query: 639 AIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQ 698
IGI GTT SCVAV+ NGK +++ N +G R TPS V +T+D R+I G AK Q
Sbjct: 20 VIGI------DLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLI-GDAAKNQ 72
Query: 699 AITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAW-VEVKDQYC--APPQ 755
NP NT++ IKRLIG KY D VQKDIK +P+ +V D A V VK + P +
Sbjct: 73 VAANPQNTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEE 132
Query: 756 ISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTA 815
IS IL KMK AE +L K+ AV+TVPAYFND+QRQATKDAG IAGL VLRI+NEPTA
Sbjct: 133 ISGMILGKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTA 192
Query: 816 AALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDM 875
AA+AYGLDK + I+VYDLGGGTFD+S++ I FEV +T+GDT LGGEDFD
Sbjct: 193 AAIAYGLDKSDKEHQIIVYDLGGGTFDVSLLSI----ENGVFEVQATSGDTHLGGEDFDY 248
Query: 876 RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPK 935
+I+ LI FK ++G+D+S ++ A+ +LK AEKAK LS+ T I +
Sbjct: 249 KIVRQLIKAFKKKHGIDVSDNNKALAKLKREAEKAKRALSSQMSTRIEIDSFVDG----I 304
Query: 936 HLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVS 995
L+ +TR+K E L DL K+LKP E L D+ ++K + +I+LVGG TR+P VQ+++
Sbjct: 305 DLSETLTRAKFEELNLDLFKKTLKPVEKVLQDSGLEKKDVDDIVLVGGSTRIPKVQQLLE 364
Query: 996 EFFE-KEVKKDINPDEAVAVGASVQAGVLS 1024
+F+ K+ K INPDEAVA GA+VQAGVLS
Sbjct: 365 SYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 591 bits (1525), Expect = 0.0
Identities = 198/392 (50%), Positives = 260/392 (66%), Gaps = 16/392 (4%)
Query: 1 QYCKIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAI 60
Q IGIDLGTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q
Sbjct: 21 QSMPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQVA 79
Query: 61 TNPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVA-ADNGDAWVEVK--DKKLAPPQIS 117
NP NT++ KRLIGRK+ D VQ+ +K P+++V+ VE K K P +IS
Sbjct: 80 MNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEIS 139
Query: 118 AEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 177
+ +L KMK AE +L K+ AVITVPAYFNDSQRQATKDAG I GL VLRIINEPTAAA
Sbjct: 140 SMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAA 199
Query: 178 LAYGLDKKPD---DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFD 234
+AYGLDKK ++ ++++DLGGGTFD+S++ I + FEV ST GDT LGGEDFD
Sbjct: 200 IAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGEDFD 255
Query: 235 MRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGP 294
R+++HL EFK ++ D+ + A++RL+ A E+AK LS++ Q I + +
Sbjct: 256 NRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG---- 311
Query: 295 KHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMV 354
ITR++ E L DL +L+P E AL DAK+DK +I EI+LVGG TR+P +QK++
Sbjct: 312 VDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQKLL 371
Query: 355 SEFFE-KEVKKDINPDEAVAVGASVQAGVLSG 385
+FF KE+ K INPDEAVA GA+VQA +L G
Sbjct: 372 QDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403
Score = 576 bits (1488), Expect = 0.0
Identities = 196/394 (49%), Positives = 258/394 (65%), Gaps = 22/394 (5%)
Query: 639 AIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQ 698
AIGI GTT SCV V +GK ++I N +G RTTPS V +T+ R+I G AK Q
Sbjct: 25 AIGI------DLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLI-GDAAKNQ 77
Query: 699 AITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVA-ADNGDAWVEVKDQYC--APPQ 755
NP NT++ KRLIGRK+ D VQ D+K P+++V+ VE K + P +
Sbjct: 78 VAMNPTNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEE 137
Query: 756 ISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTA 815
IS+ +L KMK AE +L K+ AVITVPAYFNDSQRQATKDAG I GL VLRIINEPTA
Sbjct: 138 ISSMVLTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTA 197
Query: 816 AALAYGLDKKPD---DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 872
AA+AYGLDKK ++ ++++DLGGGTFD+S++ I + FEV ST GDT LGGED
Sbjct: 198 AAIAYGLDKKGCAGGEKNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGED 253
Query: 873 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKN 932
FD R+++HL EFK ++ D+ + A++RL+ A E+AK LS++ Q I + +
Sbjct: 254 FDNRMVSHLAEEFKRKHKKDIGPNKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG-- 311
Query: 933 GPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQK 992
ITR++ E L DL +L+P E AL DAK+DK +I EI+LVGG TR+P +QK
Sbjct: 312 --VDFYTSITRARFEELNADLFRGTLEPVEKALRDAKLDKGQIQEIVLVGGSTRIPKIQK 369
Query: 993 MVSEFFE-KEVKKDINPDEAVAVGASVQAGVLSG 1025
++ +FF KE+ K INPDEAVA GA+VQA +L G
Sbjct: 370 LLQDFFNGKELNKSINPDEAVAYGAAVQAAILIG 403
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A
2bpr_A 1dg4_A
Length = 219
Score = 341 bits (877), Expect = e-109
Identities = 121/210 (57%), Positives = 170/210 (80%)
Query: 1030 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKA 1089
VLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDNQ++VTIH LQGERK+A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 1090 SQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLS 1149
+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK +GKEQ I IK+S GL+
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 1150 EIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKS 1209
E EI+ M++DAE N+E D+KFEELV+ +N+ D + +K +++ K+ ++K +IE +
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESA 180
Query: 1210 ISNLELLIKGDDIELIKKGNEDLLKISENI 1239
++ LE +KG+D I+ ++L ++S+ +
Sbjct: 181 LTALETALKGEDKAAIEAKMQELAQVSQKL 210
Score = 294 bits (754), Expect = 4e-92
Identities = 114/192 (59%), Positives = 150/192 (78%), Gaps = 8/192 (4%)
Query: 390 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKA 449
VLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDNQ++VTIH LQGERK+A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 450 SQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLS 509
+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK +GKEQ I IK+S GL+
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSGLN 120
Query: 510 EIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKL 569
E EI+ M++DAE N+E D+KFEELV+ +N+ + T+K+ + DK+
Sbjct: 121 EDEIQKMVRDAEANAEADRKFEELVQTRNQGD--------HLLHSTRKQVEEAGDKLPAD 172
Query: 570 KEIVIENIIIEL 581
+ IE+ + L
Sbjct: 173 DKTAIESALTAL 184
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia coli}
SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 328 bits (844), Expect = e-104
Identities = 78/207 (37%), Positives = 131/207 (63%)
Query: 1033 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN 1092
+DV PL+LG+ETMGG++ +I +NTTIP + Q F+T +D QT+++IH +QGER+
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 1093 KSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIE 1152
+SL +F L I P G I V+F +DA+G+L+VTA +K TG E SI +K S GL++ E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 1153 IENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISN 1212
I +MIKD+ +E D K L + K EA + + L + ++ E++ I+ + ++
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 1213 LELLIKGDDIELIKKGNEDLLKISENI 1239
L + +GDD++ I++ +++ K +++
Sbjct: 181 LSEVAQGDDVDAIEQAIKNVDKQTQDF 207
Score = 280 bits (719), Expect = 5e-87
Identities = 72/189 (38%), Positives = 107/189 (56%), Gaps = 8/189 (4%)
Query: 393 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN 452
+DV PL+LG+ETMGG++ +I +NTTIP + Q F+T +D QT+++IH +QGER+
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 453 KSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIE 512
+SL +F L I P G I V+F +DA+G+L+VTA +K TG E SI +K S GL++ E
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYGLTDSE 120
Query: 513 IENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEI 572
I +MIKD+ +E D K L + K E + D + +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAA--------RVLESLHGALAADAALLSAAERQ 172
Query: 573 VIENIIIEL 581
VI++ L
Sbjct: 173 VIDDAAAHL 181
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 318 bits (816), Expect = e-101
Identities = 96/174 (55%), Positives = 125/174 (71%)
Query: 1019 QAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVT 1078
L +DVTPL+LGIET+GGV T LI +NTTIPT+K+QVFSTA D QT V
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 1079 IHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQ 1138
I QGER+ A NK LG+F L I PAPRGVPQIEV+FD+DANGI++V+AKDK TG+EQ
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 1139 SIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLK 1192
I+I+SSGGLS+ +IENM+K+AE +E D++ +E V+ N A+ I + ++
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
Score = 306 bits (785), Expect = 6e-97
Identities = 98/171 (57%), Positives = 123/171 (71%), Gaps = 2/171 (1%)
Query: 379 QAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVT 438
L +DVTPL+LGIET+GGV T LI +NTTIPT+K+QVFSTA D QT V
Sbjct: 9 SGVDLGTENLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQTQVE 68
Query: 439 IHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQ 498
I QGER+ A NK LG+F L I PAPRGVPQIEV+FD+DANGI++V+AKDK TG+EQ
Sbjct: 69 IKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGTGREQ 128
Query: 499 SIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKN--EQIIILEEK 547
I+I+SSGGLS+ +IENM+K+AE +E D++ +E V+ N E II E
Sbjct: 129 QIVIQSSGGLSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTET 179
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12, HSP70
protein, peptide-BIN domain, PSI-2, protein structure
initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 276 bits (709), Expect = 1e-86
Identities = 96/148 (64%), Positives = 122/148 (82%)
Query: 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 1093
DVTPL+LGIET+GG+MT LI +NTTIPT+K+QVFSTA D QT V I QGER+ A+ NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 1094 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEI 1153
LG+F L I PAPRGVPQ+EV+FD+DANGI+NV+A+D+ TGKEQ I+I+SSGGLS+ +I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 1154 ENMIKDAELNSELDKKFEELVKCKNEAD 1181
ENMIK+AE N+ D K +ELV+ N+A+
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQAE 151
Score = 272 bits (697), Expect = 4e-85
Identities = 95/146 (65%), Positives = 120/146 (82%)
Query: 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 453
DVTPL+LGIET+GG+MT LI +NTTIPT+K+QVFSTA D QT V I QGER+ A+ NK
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 454 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEI 513
LG+F L I PAPRGVPQ+EV+FD+DANGI+NV+A+D+ TGKEQ I+I+SSGGLS+ +I
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGGLSKDQI 123
Query: 514 ENMIKDAELNSELDKKFEELVKCKNE 539
ENMIK+AE N+ D K +ELV+ N+
Sbjct: 124 ENMIKEAEKNAAEDAKRKELVEVINQ 149
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 259 bits (663), Expect = 1e-80
Identities = 89/135 (65%), Positives = 113/135 (83%)
Query: 374 VGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDN 433
+G+S V + ++DVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDN
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 434 QTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKK 493
Q++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 494 TGKEQSIIIKSSGGL 508
+GKEQ I IK+S GL
Sbjct: 121 SGKEQKITIKASSGL 135
Score = 259 bits (663), Expect = 1e-80
Identities = 89/135 (65%), Positives = 113/135 (83%)
Query: 1014 VGASVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDN 1073
+G+S V + ++DVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDN
Sbjct: 1 MGSSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDN 60
Query: 1074 QTSVTIHTLQGERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKK 1133
Q++VTIH LQGERK+A+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK
Sbjct: 61 QSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKN 120
Query: 1134 TGKEQSIIIKSSGGL 1148
+GKEQ I IK+S GL
Sbjct: 121 SGKEQKITIKASSGL 135
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain, structural
genomics, APC90014. 2, protein structure initiative;
1.85A {Caenorhabditis elegans}
Length = 152
Score = 246 bits (630), Expect = 7e-76
Identities = 79/149 (53%), Positives = 106/149 (71%), Gaps = 1/149 (0%)
Query: 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 1093
DV PLTLGIET+GGVMT LI +NT IPT+K+QVFSTA D+Q++V+I +GER N
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 1094 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 1152
LG FD+ I PAPRGVPQIEV+F++D NGIL+V+A+DK TG + + I + LS +
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 1153 IENMIKDAELNSELDKKFEELVKCKNEAD 1181
IE MI DA+ + D+ +E V+ +NE +
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
Score = 244 bits (625), Expect = 4e-75
Identities = 79/147 (53%), Positives = 105/147 (71%), Gaps = 1/147 (0%)
Query: 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 453
DV PLTLGIET+GGVMT LI +NT IPT+K+QVFSTA D+Q++V+I +GER N
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 454 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 512
LG FD+ I PAPRGVPQIEV+F++D NGIL+V+A+DK TG + + I + LS +
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 513 IENMIKDAELNSELDKKFEELVKCKNE 539
IE MI DA+ + D+ +E V+ +NE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNE 150
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2; 1.92A
{Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 243 bits (623), Expect = 7e-75
Identities = 82/149 (55%), Positives = 107/149 (71%), Gaps = 1/149 (0%)
Query: 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 1093
DV LTLGIET GGVMTPLI++NT IPT+K+Q+FSTA DNQ +V I +GER + N
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 1094 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 1152
LGKF+L I PAPRGVPQIEV+F LDANGIL V+A DK TGK +SI I + G L++ E
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 1153 IENMIKDAELNSELDKKFEELVKCKNEAD 1181
I+ M+++AE + D + V+ +N+ +
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
Score = 241 bits (618), Expect = 3e-74
Identities = 82/147 (55%), Positives = 106/147 (72%), Gaps = 1/147 (0%)
Query: 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 453
DV LTLGIET GGVMTPLI++NT IPT+K+Q+FSTA DNQ +V I +GER + N
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 454 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 512
LGKF+L I PAPRGVPQIEV+F LDANGIL V+A DK TGK +SI I + G L++ E
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 513 IENMIKDAELNSELDKKFEELVKCKNE 539
I+ M+++AE + D + V+ +N+
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNK 150
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics, APC90015.11,
peptide-binding domain, HS 2, protein structure
initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 242 bits (619), Expect = 2e-74
Identities = 74/149 (49%), Positives = 104/149 (69%), Gaps = 1/149 (0%)
Query: 1034 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 1093
DV PL+LGIET GGVMT LI++NT IPT+ + F+T DNQ V+I +GER N
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 1094 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 1152
LG F+L+ I PAPRGVPQIEV+F++DANGILNV+A+DK TGK I I++ G L++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 1153 IENMIKDAELNSELDKKFEELVKCKNEAD 1181
I+ M+ +A+ + D + E V+ +N+ +
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
Score = 240 bits (615), Expect = 9e-74
Identities = 74/147 (50%), Positives = 103/147 (70%), Gaps = 1/147 (0%)
Query: 394 DVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNK 453
DV PL+LGIET GGVMT LI++NT IPT+ + F+T DNQ V+I +GER N
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 454 SLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG-LSEIE 512
LG F+L+ I PAPRGVPQIEV+F++DANGILNV+A+DK TGK I I++ G L++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 513 IENMIKDAELNSELDKKFEELVKCKNE 539
I+ M+ +A+ + D + E V+ +N+
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQ 150
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 144 bits (365), Expect = 2e-38
Identities = 63/377 (16%), Positives = 113/377 (29%), Gaps = 112/377 (29%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRII--VGLPAKRQAITNP 63
+ L N + + P VG I V +
Sbjct: 6 LEQKLNLLNDLI---VREIVNPLP-------PPYKVGVDLGTADIVLVVTDQEGI----- 50
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
V + A VKD + + +I+++
Sbjct: 51 -------------------------PVAGALKWAS------VVKDGLVVDYIGAIQIVRE 79
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
+K+ E L ++ +A +P +A AGLE++ +++EP AAA A G++
Sbjct: 80 LKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGIN 139
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
+V D+GGGT I+VIE + + D GG + +
Sbjct: 140 DG------IVVDIGGGTTGIAVIEKGKI-------TAT--FDEPTGGTHLSLVLAGSYKI 184
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
F E AE K + S +
Sbjct: 185 PF-------------------EEAETIKKDFSRHRE------------------------ 201
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
+ +V +I K + + + + + +VGG + + S F KEV+
Sbjct: 202 --IMRVVRPVIEKMALIVKEVIKNY----DQTLPVYVVGGTAYLTGFSEEFSRFLGKEVQ 255
Query: 364 KDINPDEAVAVGASVQA 380
I+P +G ++
Sbjct: 256 VPIHPLLVTPLGIALFG 272
Score = 133 bits (338), Expect = 7e-35
Identities = 62/372 (16%), Positives = 110/372 (29%), Gaps = 112/372 (30%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRII--VGLPAKRQAITNPNNTLY 708
N + + P VG I V +
Sbjct: 11 NLLNDLI---VREIVNPLP-------PPYKVGVDLGTADIVLVVTDQEGI---------- 50
Query: 709 AIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTA 768
V + A VKD + +I++++K+
Sbjct: 51 --------------------PVAGALKWAS------VVKDGLVVDYIGAIQIVRELKAKV 84
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
E L ++ +A +P +A AGLE++ +++EP AAA A G++
Sbjct: 85 ERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPVAAARALGINDG--- 141
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
+V D+GGGT I+VIE + + D GG + + F
Sbjct: 142 ---IVVDIGGGTTGIAVIEKGKI-------TAT--FDEPTGGTHLSLVLAGSYKIPF--- 186
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
E AE K + S + +
Sbjct: 187 ----------------EEAETIKKDFSRHRE--------------------------IMR 204
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINP 1008
+V +I K + + + + + +VGG + + S F KEV+ I+P
Sbjct: 205 VVRPVIEKMALIVKEVIKNY----DQTLPVYVVGGTAYLTGFSEEFSRFLGKEVQVPIHP 260
Query: 1009 DEAVAVGASVQA 1020
+G ++
Sbjct: 261 LLVTPLGIALFG 272
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 101 bits (251), Expect = 3e-23
Identities = 46/381 (12%), Positives = 119/381 (31%), Gaps = 68/381 (17%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
++ ID G+TN + E+ + S + + + G N
Sbjct: 2 LVFIDDGSTNIKLQW--------QESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGE 53
Query: 65 NTLY---AIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEIL 121
+ + ++ + + V + ++ + + V++ L
Sbjct: 54 QYSFDPISPDAVVTTNIAWQYSDVNVVAVHHALLTSGLPVSEVDI-----------VCTL 102
Query: 122 KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 181
+ + + + + +++ T + G ++ ++++ E A
Sbjct: 103 P-----LTEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVL 157
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
+ D ++++ DLGG T DIS + + GD+ LG + + L
Sbjct: 158 QELDELDSLLII-DLGGTTLDISQVMGKLSG------ISKIYGDSSLGVSLVTSAVKDAL 210
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
+ LA + + + +I
Sbjct: 211 SLARTKGS------SYLADDIIIHRKDNNYL-------------------------KQRI 239
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRM--PLVQKMVSEFFE 359
S+V + ++++L+ E + + + S + ++++GG + V+K E
Sbjct: 240 NDENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDE 299
Query: 360 KEVKKDINPDEAVAVGASVQA 380
+ K + N + G +
Sbjct: 300 RFFKTN-NSQYDLVNGMYLIG 319
Score = 96.8 bits (240), Expect = 8e-22
Identities = 34/254 (13%), Positives = 85/254 (33%), Gaps = 41/254 (16%)
Query: 769 ETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD 828
+ + + + + +++ T + G ++ ++++ E A + D
Sbjct: 105 TEYYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQELDELD 164
Query: 829 RIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIE 888
++++ DLGG T DIS + + GD+ LG + + L
Sbjct: 165 SLLII-DLGGTTLDISQVMGKLSG------ISKIYGDSSLGVSLVTSAVKDALSLARTKG 217
Query: 889 NGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
+ LA + + + +I S
Sbjct: 218 S------SYLADDIIIHRKDNNYL-------------------------KQRINDENKIS 246
Query: 949 LVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRM--PLVQKMVSEFFEKEVKKDI 1006
+V + ++++L+ E + + + S + ++++GG + V+K E+ K +
Sbjct: 247 IVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAELICDAVKKHTQIRDERFFKTN- 305
Query: 1007 NPDEAVAVGASVQA 1020
N + G +
Sbjct: 306 NSQYDLVNGMYLIG 319
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 96.4 bits (239), Expect = 2e-21
Identities = 57/391 (14%), Positives = 115/391 (29%), Gaps = 94/391 (24%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
++G+D+G ++ + +GK + PS TE +G +
Sbjct: 22 VVVGLDVGYGDT-KVIGVDGKRIIF---------PSRWAVTETESWGIGGKIPVLSTDGG 71
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
K A + V D +LA + I
Sbjct: 72 QTKFIYGKY------------------------ASGNNIRVPQGDGRLASKEAFPLIAAA 107
Query: 124 MKSTAETFLNEKIEKAVIT-VPAYFNDSQRQATKDA------------GKIAGLEVLRII 170
+ + ++ + + P D + +A K+A G++ + R+I
Sbjct: 108 LWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNITRLI 167
Query: 171 NEPTAAALAYGL----DKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDT 226
P A L + VV D+G T D+ I + +++ V+ +
Sbjct: 168 MRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP-----VVELSFSL 222
Query: 227 FLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPY 286
+G D + + E D L + A + +Q
Sbjct: 223 QIGVGDAISALSRKIAKETGFVVPFD----------LAQEALSHPVMFRQ-KQVGGP--- 268
Query: 287 ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 346
+++ LE L +I + + + +++ +I VGG +
Sbjct: 269 -------------EVSGPILEDLANRIIEN-------IRLNLRGEVDRVTSLIPVGGGSN 308
Query: 347 MPLVQKMVSEFFEKEVKKDI--NPDEAVAVG 375
L+ E + K + A A+G
Sbjct: 309 --LIGDRFEEIAPGTLVKIKPEDLQFANALG 337
Score = 82.9 bits (204), Expect = 6e-17
Identities = 57/404 (14%), Positives = 112/404 (27%), Gaps = 100/404 (24%)
Query: 637 HEAIGIYPTFGKKK------GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRII 690
H + G+ P G ++ + +GK + PS TE
Sbjct: 9 HHSSGLVPRGSHMVVVGLDVGYGDT-KVIGVDGKRIIF---------PSRWAVTETESWG 58
Query: 691 VGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQY 750
+G + K A + V D
Sbjct: 59 IGGKIPVLSTDGGQTKFIYGKY------------------------ASGNNIRVPQGDGR 94
Query: 751 CAPPQISAEILKKMKSTAETFLNEKIEKAVIT-VPAYFNDSQRQATKDA----------- 798
A + I + + ++ + + P D + +A K+A
Sbjct: 95 LASKEAFPLIAAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGP 154
Query: 799 -GKIAGLEVLRIINEPTAAALAYGL----DKKPDDRIIVVYDLGGGTFDISVIEIANVDG 853
G++ + R+I P A L + VV D+G T D+ I + +++
Sbjct: 155 EGEVRQFNITRLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP 214
Query: 854 ETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIE 913
V+ + +G D + + E D L + A +
Sbjct: 215 -----VVELSFSLQIGVGDAISALSRKIAKETGFVVPFD----------LAQEALSHPVM 259
Query: 914 LSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKS 973
+Q +++ LE L +I + + +
Sbjct: 260 FRQ-KQVGGP----------------EVSGPILEDLANRIIEN-------IRLNLRGEVD 295
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDI--NPDEAVAVG 1015
+++ +I VGG + L+ E + K + A A+G
Sbjct: 296 RVTSLIPVGGGSN--LIGDRFEEIAPGTLVKIKPEDLQFANALG 337
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 83.0 bits (204), Expect = 5e-16
Identities = 69/406 (16%), Positives = 147/406 (36%), Gaps = 109/406 (26%)
Query: 872 DFDM--------RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDI- 922
DF+ I++ F + K+ + K LS E I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV----DNFD--------CKDVQDMPKSILSKEEIDHII 55
Query: 923 NLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKP----CEVALNDAKIDKSKISEI 978
+G L SK E +V+ + + L+ + + S ++ +
Sbjct: 56 MSK---DAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 979 -------ILVGGQ-------TRMPLVQKMVSEFFEKEVKKDINPDEAVAV-GASVQAGVL 1023
+ Q +R+ K+ ++ ++ P + V + G G
Sbjct: 112 YIEQRDRLYNDNQVFAKYNVSRLQPYLKL------RQALLELRPAKNVLIDG---VLG-- 160
Query: 1024 SGVVKDVLLLDVTPLTLGIE----------TMGGVMTP--LIEKNTTIPTRKTQVFSTAE 1071
SG K + LDV L+ ++ + +P ++E + + +++
Sbjct: 161 SG--KTWVALDVC-LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 1072 DNQTSV--TIHTLQGERKKASQNKSLGK--FDLNDISPAPRGVPQIEVSFDLDANGILNV 1127
D+ +++ IH++Q E ++ ++K L ++ + +F+L IL +
Sbjct: 218 DHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQN-----AKAWNAFNLSCK-IL-L 270
Query: 1128 TAKDK--------KTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 1179
T + K T S+ S L+ E++++ L LD + ++L E
Sbjct: 271 TTRFKQVTDFLSAATTTHISLD-HHSMTLTPDEVKSL-----LLKYLDCRPQDL---PRE 321
Query: 1180 ADST----ISIVKKNLKD-----ENTKITDEEK--ESIEKSISNLE 1214
+T +SI+ ++++D +N K + +K IE S++ LE
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367
Score = 78.0 bits (191), Expect = 2e-14
Identities = 85/685 (12%), Positives = 193/685 (28%), Gaps = 223/685 (32%)
Query: 232 DFDM--------RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDI- 282
DF+ I++ F + K+ + K LS E I
Sbjct: 8 DFETGEHQYQYKDILSVFEDAFV----DNFD--------CKDVQDMPKSILSKEEIDHII 55
Query: 283 NLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVG 342
+G L SK E +V+ + + L+ + K S I
Sbjct: 56 MSK---DAVSGTLRL-FWTLLSKQEEMVQKFVEEVLRI------NYKFLMSPIKT----- 100
Query: 343 GQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDVLL-LDVTPLTLG 401
+ R P M++ + ++ + N D V +V ++ LL L +
Sbjct: 101 -EQRQP---SMMTRMYIEQRDRLYN-DNQVFAKYNVSRLQPYLKLRQALLELRPAKN-VL 154
Query: 402 IETMGG----VMTPLIEKNTTIPTRKT-QVF--STAEDNQTSVTIHTLQGERKKASQNKS 454
I+ + G + + + + + ++F + N + LQ + N +
Sbjct: 155 IDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 455 LGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIE 514
+D S + +I L K K E +++ L ++
Sbjct: 215 ----SRSDHSSNIK--LRIH-----SIQAELRRLLKSKP--YENCLLV-----LLNVQ-- 254
Query: 515 NMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVI 574
N++ F + CK I++ T+ + D I +
Sbjct: 255 --------NAKAWNAFN--LSCK---ILLT----------TRFKQVTDFLSAATTTHISL 291
Query: 575 ENIIIELIPITDSMEMFAKNFDSNQTKESE--------IIFLIFKLIK------KFYKKF 620
++ + L P + + K D + +I + I+ +K
Sbjct: 292 DHHSMTLTP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 621 NIKQISET-----GVLFNPDIH----EAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIE-- 669
N +++ VL P + + + ++P + ++
Sbjct: 351 NCDKLTTIIESSLNVL-EPAEYRKMFDRLSVFP-----PSA---------HIPTILLSLI 395
Query: 670 --NSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI----------------- 710
+ ++ ++ L P + +I
Sbjct: 396 WFDVI----------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 711 -KRLIG-----RKY-TDEIVQKDIKM-----VPYKIVAADNGD------------AWVEV 746
+ ++ + + +D+++ + + + + ++ + ++E
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ 505
Query: 747 K-----DQYCAPPQISAEI--LKKMK--------------STAETFLNEKIEKAVITVP- 784
K + A I + LK K + FL KIE+ +I
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL-PKIEENLICSKY 564
Query: 785 -------------AYFNDSQRQATK 796
A F ++ +Q +
Sbjct: 565 TDLLRIALMAEDEAIFEEAHKQVQR 589
Score = 72.6 bits (177), Expect = 7e-13
Identities = 85/628 (13%), Positives = 187/628 (29%), Gaps = 198/628 (31%)
Query: 458 FDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMI 517
FD D+ P+ + LS+ EI+++I
Sbjct: 33 FDCKDVQDMPKSI-------------------------------------LSKEEIDHII 55
Query: 518 KDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYD--EDKIR---KLKEI 572
+ S + F L+ K E+++ +KF +E +Y I+ + +
Sbjct: 56 MSKDAVSGTLRLFWTLLS-KQEEMV---QKF----VEEVLRINYKFLMSPIKTEQRQPSM 107
Query: 573 VIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNI---------K 623
+ I + + + ++FAK N ++ + L L + N+ K
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYLKLRQAL-LELRPAKNVLIDGVLGSGK 163
Query: 624 QISETGVLFNPDIHEAI--GIY-PTFGKKKGTTNSCVAVLNN----GKPQVIENSEGGRT 676
V + + + I+ + + + +L P S+
Sbjct: 164 TWVALDVCLSYKVQCKMDFKIFWLNLKNCN-SPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 677 TPSVV--GYTEDNRIIVGLPAKRQAIT-----NPNNTLYAI----KRLI---GRKYTDEI 722
+ E R++ P + + N A K L+ ++ TD +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA-KAWNAFNLSCKILLTTRFKQVTDFL 281
Query: 723 ---VQKDIKMVPYKIV-AADNGDA----WVEVKDQYCAPPQ--------IS--AEILKKM 764
I + + + D + +++ + Q P + +S AE ++
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ-DLPREVLTTNPRRLSIIAESIRDG 340
Query: 765 KSTAETFLNEKIEKAVITVPAYFN----DSQRQATKDAG------KI--AGLEVL----- 807
+T + + + +K + + N R+ I L ++
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI 400
Query: 808 -----RIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFE---V 859
++N+ +L ++K+P + I + + ++ ++ E V
Sbjct: 401 KSDVMVVVNKLHKYSL---VEKQPKESTISIPSI---YLELK----VKLENEYALHRSIV 450
Query: 860 LSTNGDTFLGGEDF-----DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE------ 908
N +D D +H+ + K ++ +
Sbjct: 451 DHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK------------NIEHPERMTLFRMVFL 498
Query: 909 -----KAKIELS----NAEQTDINL--------PYITADKNGPKHLNVKITRSKLESLVE 951
+ KI NA + +N PYI N PK+ E LV
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKY----------ERLVN 546
Query: 952 DLISKSLKPCEVALNDAKIDKSKISEII 979
++ L E + SK ++++
Sbjct: 547 AIL-DFLPKIE-----ENLICSKYTDLL 568
Score = 71.4 bits (174), Expect = 1e-12
Identities = 115/789 (14%), Positives = 233/789 (29%), Gaps = 251/789 (31%)
Query: 457 KFDLNDISPAPRGVPQIEVSF--DLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIE 514
++ DI + E +F + D + ++ +SI LS+ EI+
Sbjct: 15 QYQYKDI------LSVFEDAFVDNFDCKDVQDMP---------KSI-------LSKEEID 52
Query: 515 NMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYD--EDKIR---KL 569
++I + S + F L+ K E+++ +KF +E +Y I+ +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLS-KQEEMV---QKF----VEEVLRINYKFLMSPIKTEQRQ 104
Query: 570 KEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIKQISETG 629
++ I + + + ++FAK N ++ + KL + +
Sbjct: 105 PSMMTRMYIEQRDRLYNDNQVFAKY---NVSRLQPYL----KLRQALLE-----LRPAKN 152
Query: 630 VLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRI 689
VL I +G GK + VA+ V ++
Sbjct: 153 VL----IDGVLG----SGK------TWVAL-------------------DVC---LSYKV 176
Query: 690 IVGLPAKRQAITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQ 749
+ ++ + + + E V + ++ + Y+I W D
Sbjct: 177 Q----------CKMDFKIFWLN--LKNCNSPETVLEMLQKLLYQIDPN-----WTSRSDH 219
Query: 750 YCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRI 809
I +++ L K Y N L VL
Sbjct: 220 SSNIKLRIHSIQAELR----RLLKSK---------PYEN--------------CLLVLLN 252
Query: 810 INEP-TAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFL 868
+ A +I++ T V + + T L + T
Sbjct: 253 VQNAKAWNAFNLSC------KILLT------TRFKQVTDFLSAATTTHI-SLDHHSMTLT 299
Query: 869 GGEDFDM--RIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPY 926
E + + ++ + E L+ + L AE + L+ + N +
Sbjct: 300 PDEVKSLLLKYLDCRPQDLPRE---VLTTNPRR---LSIIAESIRDGLATWD----NWKH 349
Query: 927 ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 986
+ DK L I S L L K V A I + + +I
Sbjct: 350 VNCDK-----LTTIIESS-LNVLEPAEYRKMFDRLSVFPPSAHI-PTILLSLIWFDVIKS 402
Query: 987 MPLVQKMVSEFFEKE-VKKDINPDEAVAVGASVQAGVLSGVVKDVLLLDVTPLTLGIETM 1045
V +V++ + V+K P E +S + + L++
Sbjct: 403 --DVMVVVNKLHKYSLVEKQ--PKE----------STIS--IPS-IYLEL---------- 435
Query: 1046 GGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISP 1105
K ++ +N+ + +H R FD +D+ P
Sbjct: 436 -----------------KVKL-----ENEYA--LH-----RSIVDHYNIPKTFDSDDLIP 466
Query: 1106 AP-------------RGVPQIEVSFDLDANGILN---VTAKDKKTGKEQSIIIKSSGGLS 1149
+ + E L L+ + K + + L
Sbjct: 467 PYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQ 525
Query: 1150 EIEI-ENMIKDAE------LNSELD--KKFEE-LVKCKNEADSTISIVKKNLKDENTKIT 1199
+++ + I D + +N+ LD K EE L+ K D +++ L E+ I
Sbjct: 526 QLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSK-YTD----LLRIALMAEDEAIF 580
Query: 1200 DEEKESIEK 1208
+E + +++
Sbjct: 581 EEAHKQVQR 589
Score = 59.9 bits (144), Expect = 4e-09
Identities = 58/387 (14%), Positives = 114/387 (29%), Gaps = 134/387 (34%)
Query: 3 CKIIGIDLGTTNSCVA-VLNNGKPQVIENSEGGRTTPSVVGYTED----------NRIIV 51
CKI+ L T V L+ I + T D +
Sbjct: 266 CKIL---LTTRFKQVTDFLSAATTTHISLDH------HSMTLTPDEVKSLLLKYLDCRPQ 316
Query: 52 GLPAKRQAI-TNPNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKK 110
LP R+ + TNP + +I D + D W V K
Sbjct: 317 DLP--REVLTTNP----RRLS-IIAESIRDGLATW---------------DNWKHVNCDK 354
Query: 111 LAPP-QISAEILK--KMKSTAETFL----NEKIEKAVITVPAYFNDSQRQATKDAGKIAG 163
L + S +L+ + + + + I ++++ + D +
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL--IWFDVIKS---------- 402
Query: 164 LEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFE---VL 220
+V+ ++N+ +L ++K+P + I + + ++ ++ E V
Sbjct: 403 -DVMVVVNKLHKYSL---VEKQPKESTISIPSI---YLELK----VKLENEYALHRSIVD 451
Query: 221 STNGDTFLGGEDF-----DMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAE------- 268
N +D D +H+ + K ++ +
Sbjct: 452 HYNIPKTFDSDDLIPPYLDQYFYSHIGHHLK------------NIEHPERMTLFRMVFLD 499
Query: 269 ----KAKIELS----NAEQTDINL--------PYITADKNGPKHLNVKITRSKLESLVED 312
+ KI NA + +N PYI N PK+ E LV
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYIC--DNDPKY----------ERLVNA 547
Query: 313 LISKSLKPCEVALNDAKIDKSKISEII 339
++ L E + SK ++++
Sbjct: 548 IL-DFLPKIE-----ENLICSKYTDLL 568
Score = 53.3 bits (127), Expect = 6e-07
Identities = 84/564 (14%), Positives = 165/564 (29%), Gaps = 149/564 (26%)
Query: 46 DNRIIVGLPAKR-QAITNPNNTLYAIKRLIGRKYTDEIV--------QTVL-KMV--PYK 93
DN++ R Q L ++ ++ +T + V YK
Sbjct: 122 DNQVFAKYNVSRLQPYLKLRQALLELRPAKN------VLIDGVLGSGKTWVALDVCLSYK 175
Query: 94 IVAA-DNGDAWVEVKDKKLAPPQISAEILKKMKSTAETFLNEKIEKAVITVPAYFNDSQ- 151
+ D W+ +K+ P+ E+L+K+ + + + + + + Q
Sbjct: 176 VQCKMDFKIFWLNLKNCN--SPETVLEMLQKLLYQIDPNWTSRSDHS-SNIKLRIHSIQA 232
Query: 152 --RQATKDAGKIAGLEVLRIINEP-TAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEI 208
R+ K L VL + A +I++ T V +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSC------KILLT------TRFKQVTDF 280
Query: 209 ANVDGETQFEVLSTNGDTFLGGEDFDM--RIINHLIYEFKIENGVDLSGDSLAMQRLKEA 266
+ T L + T E + + ++ + E L+ + L
Sbjct: 281 LSAATTTHI-SLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE---VLTTNPRR---LSII 333
Query: 267 AEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALN 326
AE + L+ + N ++ DK L I S L L K V
Sbjct: 334 AESIRDGLATWD----NWKHVNCDK-----LTTIIESS-LNVLEPAEYRKMFDRLSVFPP 383
Query: 327 DAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKE-VKKDINPDEAVAVGASVQAGVLSG 385
A I + + +I V +V++ + V+K P E +S
Sbjct: 384 SAHI-PTILLSLIWFDVIKS--DVMVVVNKLHKYSLVEKQ--PKE----------STIS- 427
Query: 386 VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGE 445
+ + L++ K ++ +N+ + +H
Sbjct: 428 -IPS-IYLEL---------------------------KVKL-----ENEYA--LH----- 446
Query: 446 RKKASQNKSLGKFDLNDISPAP-------------RGVPQIEVSFDLDANGILN---VTA 489
R FD +D+ P + + E L L+ +
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPE-RMTLFRMVFLDFRFLEQ 505
Query: 490 KDKKTGKEQSIIIKSSGGLSEIEI-ENMIKDAELNSELDKKFEELVKC------KNEQII 542
K + + L +++ + I D D K+E LV K E+ +
Sbjct: 506 KIRHDSTAWNASGSILNTLQQLKFYKPYICDN------DPKYERLVNAILDFLPKIEENL 559
Query: 543 ILEEKFCSFV---LETKKETDYDE 563
I K+ + L + E ++E
Sbjct: 560 I-CSKYTDLLRIALMAEDEAIFEE 582
Score = 30.6 bits (68), Expect = 4.5
Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 25/95 (26%)
Query: 1148 LSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIE 1207
E + + KD + S + F + CK+ D SI ++ EE + I
Sbjct: 11 TGEHQYQY--KD--ILSVFEDAFVDNFDCKDVQDMPKSI-----------LSKEEIDHII 55
Query: 1208 KSISNLE--------LLIKGDDIELIKKGNEDLLK 1234
S + LL K +++ ++K E++L+
Sbjct: 56 MSKDAVSGTLRLFWTLLSKQEEM--VQKFVEEVLR 88
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 68.5 bits (167), Expect = 1e-11
Identities = 114/695 (16%), Positives = 195/695 (28%), Gaps = 288/695 (41%)
Query: 544 LEEKFCSFVLETKKETDYDEDKIRKLKEIVIENIIIELIPITDSMEMFAK--NFDSNQTK 601
L+E+F + E + D++ P T E+ K + S+ +
Sbjct: 33 LQEQFNKILPEPTEGFAADDE------------------P-TTPAELVGKFLGYVSSLVE 73
Query: 602 ESEIIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLN 661
S++ +++ +F E L DIH ++ TT
Sbjct: 74 PSKVG-QFDQVLNLCLTEF------ENCYLEGNDIHALAA---KLLQENDTTLVKTK--- 120
Query: 662 NGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKR-------QAITNPNNTLYAIKRLI 714
++I+N Y RI+ P + +A+ N L AI
Sbjct: 121 ----ELIKN------------YIT-ARIMAKRPFDKKSNSALFRAVGEGNAQLVAI---F 160
Query: 715 G-----RKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAE 769
G Y +E+ +D+ Y+ Y + I K +AE
Sbjct: 161 GGQGNTDDYFEEL--RDL----YQT---------------Y--HVLVGDLI----KFSAE 193
Query: 770 TFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDR 829
T ++ + + F GL +L + P PD
Sbjct: 194 TL--SELIRTTLDAEKVFTQ-------------GLNILEWLENP---------SNTPDKD 229
Query: 830 ----------IIVVYDLG-------------GGTFD------------ISVIEIANVDGE 854
+I V L G ++ + IA D
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSW 289
Query: 855 TQFEVLSTNGDTFL------GGEDFDMRIINHLIYEFKIENGVD-----LSGDSLAMQRL 903
F V T L E + + I E +EN LS +L +++
Sbjct: 290 ESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQV 349
Query: 904 KEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKIT---RSKLESLVEDLISKSLKP 960
++ K L +Q +I+L NG K+L V + +S L L L + K
Sbjct: 350 QDYVNKTNSHLPAGKQVEISL------VNGAKNLVV--SGPPQS-LYGLNLTL--RKAKA 398
Query: 961 CEVALNDAKIDKSKI--SEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGA-- 1016
+ +D+S+I SE R K + F P V +
Sbjct: 399 ------PSGLDQSRIPFSE--------RKL---KFSNRF---------LP-----VASPF 427
Query: 1017 ------SVQAGVLSGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTA 1070
+ +VK+ + + + IP V+
Sbjct: 428 HSHLLVPASDLINKDLVKNNVSFNAKDI-------------------QIP-----VY--- 460
Query: 1071 EDNQTSVTIHTLQGERKKASQNKSLGKFDLNDISP--APRGVPQI---------EVSFD- 1118
T G DL +S + R V I F
Sbjct: 461 ---------DTFDGS-------------DLRVLSGSISERIVDCIIRLPVKWETTTQFKA 498
Query: 1119 ---LD-----ANGILNVTAKDKKTGKEQSIIIKSS 1145
LD A+G+ +T ++K G +I+ +
Sbjct: 499 THILDFGPGGASGLGVLTHRNKD-GTGVRVIVAGT 532
Score = 63.5 bits (154), Expect = 4e-10
Identities = 107/635 (16%), Positives = 186/635 (29%), Gaps = 262/635 (41%)
Query: 397 PLTLGIETMGGVMTPLIEKNTTIPT----RKTQV---FST---------AEDNQTSVTIH 440
PLTL + G +E +PT +Q+ F+ A D++ +
Sbjct: 8 PLTL---SHGS-----LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE 59
Query: 441 TL---------QGERKKASQ-----NKSLGKFD---L--NDI-SPAPRGVPQIEVSFDLD 480
+ E K Q N L +F+ L NDI + A + + + + +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKT 119
Query: 481 ANGILN-----VTAKDKKTGKEQSIIIKSS-----------GG-------LSEI-EI--- 513
I N + AK K S + ++ GG E+ ++
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQT 179
Query: 514 -ENMIKDAELNSELDKKFEELVKCKNEQIII----------LEEK--------------- 547
++ D L + EL++ + + LE
Sbjct: 180 YHVLVGD--LIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPIS 237
Query: 548 --------FCSFVLETKKETDYDEDKIRKLKE---IVIENIII-ELIPITDSMEMFAKNF 595
+V+ T K + ++R + + ++ I TDS E +F
Sbjct: 238 CPLIGVIQLAHYVV-TAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE----SF 292
Query: 596 DSNQTKESEIIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNS 655
+ K ++F I GV +EA YP N+
Sbjct: 293 FVSVRKAITVLFFI-------------------GVRC----YEA---YP---------NT 317
Query: 656 CVAVLNNGKPQVIENS-EGGRTTPS----VVGYTED---------NRIIVGLPAKRQ--- 698
+ P ++E+S E PS + T++ N LPA +Q
Sbjct: 318 SLP------PSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS---HLPAGKQVEI 368
Query: 699 AITN-PNN--------TLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQ 749
++ N N +LY + + RK A +G DQ
Sbjct: 369 SLVNGAKNLVVSGPPQSLYGLNLTL-RK-----------------AKAPSG------LDQ 404
Query: 750 YCAP-----PQISAEIL--------KKMKSTAETFLNEKIEKAV------ITVPAYFNDS 790
P + S L + ++ + ++ V I +P Y
Sbjct: 405 SRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY---- 460
Query: 791 QRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDD----------RIIVVYDLG-GG 839
T D LR+++ + + + + P I+ D G GG
Sbjct: 461 ---DTFDG------SDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHIL---DFGPGG 508
Query: 840 TFDISVIEIANVDGETQFEV-----LSTNGDTFLG 869
+ V+ N DG T V L N D G
Sbjct: 509 ASGLGVLTHRNKDG-TGVRVIVAGTLDINPDDDYG 542
Score = 53.1 bits (127), Expect = 6e-07
Identities = 118/652 (18%), Positives = 203/652 (31%), Gaps = 238/652 (36%)
Query: 136 IEKAVITVPA--YFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRI-IV 192
+E V+ VP +F SQ Q + +I+ EPT + D +P +V
Sbjct: 16 LE-HVLLVPTASFFIASQLQE----------QFNKILPEPTEG---FAADDEPTTPAELV 61
Query: 193 VYDLGGGTFDISVIEIANVDGETQ--------FEVLSTNGDTFLGGEDFDMRIINHLIYE 244
LG + S++E + V Q FE + +L G D I+ L +
Sbjct: 62 GKFLG---YVSSLVEPSKVGQFDQVLNLCLTEFE------NCYLEGND-----IHALAAK 107
Query: 245 FKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRS 304
EN L K K + N YITA + + K + S
Sbjct: 108 LLQENDTTLV--------------KTKELIKN---------YITARIMAKRPFD-KKSNS 143
Query: 305 KLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQ---------------TRMPL 349
L +++ + + GGQ T L
Sbjct: 144 AL------------------FRAVGEGNAQL--VAIFGGQGNTDDYFEELRDLYQTYHVL 183
Query: 350 VQKMVSEFFEK---------EVKK------DIN---------PDEAVAVGASVQAGVLSG 385
V ++ E + +K +I PD+ + + + L G
Sbjct: 184 VGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPI-SCPLIG 242
Query: 386 VVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTT----IPTRKTQVFSTAED-----NQTS 436
V++ + VT LG G + ++ T + T + +
Sbjct: 243 VIQLAHYV-VTAKLLGFTP--GELRSYLKGATGHSQGLVT--AVAIAETDSWESFFVSVR 297
Query: 437 VTIHTL--QGER-KKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKK 493
I L G R +A N SL L D GVP S +L+++
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVP----SP------MLSIS----- 342
Query: 494 TGKEQSIIIKSSGGLSEIEIENMIKDAELNSEL--DKKFE-ELVKCKN--EQIII----- 543
L++ ++++ + + NS L K+ E LV N + +++
Sbjct: 343 -------------NLTQEQVQDYVN--KTNSHLPAGKQVEISLV---NGAKNLVVSGPPQ 384
Query: 544 -LEEKFCSFVLETKKETDYDEDKI----RKLK---------------------EIVIE-- 575
L + + K + D+ +I RKLK +++ +
Sbjct: 385 SL-YGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDL 443
Query: 576 ---NIII---EL-IPITDSMEMFAKNFD-SN-QTKESEIIFLIFKLIKKFYKKFN---IK 623
N+ ++ IP+ D+ FD S+ + I I I
Sbjct: 444 VKNNVSFNAKDIQIPVYDT-------FDGSDLRVLSGSISERIVDCI--IRLPVKWETTT 494
Query: 624 QISETGVL-FNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIENSEGG 674
Q T +L F P +G+ T K GT V V+ G + + + G
Sbjct: 495 QFKATHILDFGPGGASGLGVL-THRNKDGT---GVRVIVAGTLDINPDDDYG 542
Score = 52.7 bits (126), Expect = 8e-07
Identities = 50/326 (15%), Positives = 102/326 (31%), Gaps = 102/326 (31%)
Query: 747 KDQYCAPPQISAEILKKMKSTAETFLNEKIEKAVITVPA----YFNDSQRQA-------- 794
D Y + ++ + + + I VI P +F + +
Sbjct: 1633 MDLYKTSK-AAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAM 1691
Query: 795 ---TKDAGKIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGT-FD---ISVIE 847
T GK+ ++ + INE + + + T F ++++E
Sbjct: 1692 IFETIVDGKLKTEKIFKEINEHSTSYTFRS----EKGLL----SA---TQFTQPALTLME 1740
Query: 848 IANVDGETQFEVLSTNG-----DTFLG---GEDFDMRIINHLIYE--------FKIENGV 891
A FE L + G TF G GE Y IE+ V
Sbjct: 1741 KA------AFEDLKSKGLIPADATFAGHSLGE-----------YAALASLADVMSIESLV 1783
Query: 892 DLSGDSLAMQR---LKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLES 948
++ + R ++ A + ++ SN IN P + ++ L+
Sbjct: 1784 EV----VF-YRGMTMQVAVPRDELGRSNYGMIAIN----------PGRVAASFSQEALQY 1828
Query: 949 LVEDLISKSLKPCEVA-LNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKK-DI 1006
+VE + ++ E+ N ++ + G R + + + +++K DI
Sbjct: 1829 VVERVGKRTGWLVEIVNYNVE-------NQQYVAAGDLRA--LDTVTNVLNFIKLQKIDI 1879
Query: 1007 NPDEAVAVGASVQAGVLSGVVKDVLL 1032
+ S++ V+ L
Sbjct: 1880 ---IELQKSLSLEE------VEGHLF 1896
Score = 52.7 bits (126), Expect = 9e-07
Identities = 62/376 (16%), Positives = 111/376 (29%), Gaps = 154/376 (40%)
Query: 250 GVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNV-------KIT 302
G+DL S A Q + A+ + DI N P +L + K
Sbjct: 1632 GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDI-------VINNPVNLTIHFGGEKGKRI 1684
Query: 303 RSKLESLVEDLISKSLKPCEVALNDAKIDKSKIS----EIILVGGQTR-----MPLVQKM 353
R +++ + I E + + + + +L T+ + L++K
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLL--SATQFTQPALTLMEKA 1742
Query: 354 VSEFFEKEVKKDINPDEAVA---VG-----ASVQAGVLSGVVKDVLLLDVTPLTLGIETM 405
E + + I D A +G AS+ A V+S ++ ++ +
Sbjct: 1743 AFEDLKSK--GLIPADATFAGHSLGEYAALASL-ADVMS--IESLVEV------------ 1785
Query: 406 GGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN----KSLGK--FD 459
VF R Q LG+ +
Sbjct: 1786 --------------------VF-----------------YRGMTMQVAVPRDELGRSNYG 1808
Query: 460 LNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGGLSEIEIENMIKD 519
+ I+P ++ SF +A + V + + K +G L +EI N
Sbjct: 1809 MIAINPG-----RVAASFSQEA--LQYVVER----------VGKRTGWL--VEIVN---- 1845
Query: 520 AELNSELDKKFEELVKCKNEQIII---LE--EKFCSFVLETKKETDYDEDKIRKLKEIVI 574
N E N+Q + L + + L I +
Sbjct: 1846 --YNVE------------NQQYVAAGDLRALDTVTNV-----------------LNFIKL 1874
Query: 575 ENI-IIELIPITDSME 589
+ I IIEL + S+E
Sbjct: 1875 QKIDIIEL-QKSLSLE 1889
Score = 50.0 bits (119), Expect = 6e-06
Identities = 44/293 (15%), Positives = 86/293 (29%), Gaps = 97/293 (33%)
Query: 153 QATKDAGKIAGLEVLRII-NEPTAAALAYG---------------LDKKPDDRIIVVYDL 196
+A G +L I+ N P + +G + D ++
Sbjct: 1648 RADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIF 1707
Query: 197 GGGTFDISVIEIANVDGE------TQ----------FEVLSTNG-----DTFLG---GED 232
+ + G TQ FE L + G TF G GE
Sbjct: 1708 KEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGE- 1766
Query: 233 FDMRIINHLIYE--------FKIENGVDLSGDSLAMQR---LKEAAEKAKIELSNAEQTD 281
Y IE+ V++ + R ++ A + ++ SN
Sbjct: 1767 ----------YAALASLADVMSIESLVEV----VF-YRGMTMQVAVPRDELGRSNYGMIA 1811
Query: 282 INLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVA-LNDAKIDKSKISEIIL 340
IN P + ++ L+ +VE + ++ E+ N ++ +
Sbjct: 1812 IN----------PGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVE-------NQQYV 1854
Query: 341 VGGQTRMPLVQKMVSEFFEKEVKK-DINPDEAVAVGASVQAGVLSGVVKDVLL 392
G R + + + +++K DI + S++ V+ L
Sbjct: 1855 AAGDLRA--LDTVTNVLNFIKLQKIDI---IELQKSLSLEE------VEGHLF 1896
Score = 48.1 bits (114), Expect = 2e-05
Identities = 57/346 (16%), Positives = 109/346 (31%), Gaps = 129/346 (37%)
Query: 73 LIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKD---------KKLAPPQISAEILKK 123
LIG ++Q + Y + A G E++ + L ++A +
Sbjct: 240 LIG------VIQ----LAHYVVTAKLLGFTPGELRSYLKGATGHSQGL----VTAVAIA- 284
Query: 124 MKSTAETFLNEKIEKAV-----I------TVP-AYFNDSQRQATKDAGK--------IAG 163
+ E+F + KA+ I P S + + + + I+
Sbjct: 285 ETDSWESFF-VSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISN 343
Query: 164 L---EVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVL 220
L +V +N+ T + L P + +EI+ V+G V+
Sbjct: 344 LTQEQVQDYVNK-TNSHL-------PAGK---------------QVEISLVNGAKNL-VV 379
Query: 221 STNGDTFLGGEDFDMRIINHLIYEFKIENGVD-----LSGDSLAMQR------------- 262
S G + +N + + K +G+D S +R
Sbjct: 380 S--------GPPQSLYGLNLTLRKAKAPSGLDQSRIPFS------ERKLKFSNRFLPVAS 425
Query: 263 ------LKEAAEKAKIELSNAE----QTDINLP-YITADKNGPKHLNVKITRSKLESLVE 311
L A++ +L DI +P Y T D + + L+ I+ E +V
Sbjct: 426 PFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS----ERIV- 480
Query: 312 DLISKSLKPCEVALNDAKIDKSKISEIILVG--GQTRM-PLVQKMV 354
D I + + + K + I+ G G + + L +
Sbjct: 481 DCI------IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNK 520
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 66.6 bits (162), Expect = 1e-11
Identities = 53/391 (13%), Positives = 111/391 (28%), Gaps = 85/391 (21%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
++ +D G V N + VI PS +G + +
Sbjct: 5 YVMALDFGNGF--VKGKINDEKFVI---------PSRIGRKTNENNQLKGFVDN----KL 49
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
+ + + I + + N + + +
Sbjct: 50 DVSEFIINGNNDEVL----------LFGNDLDKTTNTGKDTASTNDRYDIKSFKDLVECS 99
Query: 124 MKSTAETFLNEKIEKAVIT---VPAYFNDSQRQATKDAGKIAGLEV-----------LRI 169
+ A E + + T D Q + K K +E+ ++I
Sbjct: 100 IGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKTINVKGVKI 159
Query: 170 INEPTAAALAYGLDKKPDDRI-----IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNG 224
+ +P L ++ + V D G GT I + E F +
Sbjct: 160 VAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEEESFVIN---- 215
Query: 225 DTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINL 284
G DF RI +H+ + + G S+ + +++ E + +L+ D
Sbjct: 216 ---KGTIDFYKRIASHVSKKSE--------GASITPRMIEKGLEYKQCKLNQKTVIDFK- 263
Query: 285 PYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQ 344
+ +SL+E+++S + + I II+ GG
Sbjct: 264 ---------------DEFYKEQDSLIEEVMS--------NFEITVGNINSIDRIIVTGGG 300
Query: 345 TRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 375
+ +S ++ +K + + G
Sbjct: 301 AN--IHFDSLSHYYSDVFEKADDSQFSNVRG 329
Score = 58.5 bits (141), Expect = 5e-09
Identities = 47/341 (13%), Positives = 101/341 (29%), Gaps = 65/341 (19%)
Query: 699 AITNPNNTLYAIKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISA 758
I N +K + K + + D KD +
Sbjct: 30 RIGRKTNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKTTNTGKDTASTNDRYDI 89
Query: 759 EILKKMKSTAETFLNEKIEKA------VITVPAYFNDSQRQATK-------------DAG 799
+ K + + L ++ + +P+ + +QA
Sbjct: 90 KSFKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIA 149
Query: 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRI-----IVVYDLGGGTFDISVIEIANVDGE 854
K ++ ++I+ +P L ++ + V D G GT I + E
Sbjct: 150 KTINVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQNMKRVEE 209
Query: 855 TQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIEL 914
F + G DF RI +H+ + + G S+ + +++ E + +L
Sbjct: 210 ESFVIN-------KGTIDFYKRIASHVSKKSE--------GASITPRMIEKGLEYKQCKL 254
Query: 915 SNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSK 974
+ D + +SL+E+++S + +
Sbjct: 255 NQKTVIDFK----------------DEFYKEQDSLIEEVMS--------NFEITVGNINS 290
Query: 975 ISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVG 1015
I II+ GG + +S ++ +K + + G
Sbjct: 291 IDRIIVTGGGAN--IHFDSLSHYYSDVFEKADDSQFSNVRG 329
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 62.0 bits (150), Expect = 4e-10
Identities = 33/250 (13%), Positives = 70/250 (28%), Gaps = 55/250 (22%)
Query: 140 VITVPA--YFNDSQRQATKDA------------GKIAGLEVLRIINEPTAAALAYGLDKK 185
V+ P N ++ +D K E+ I + + + + +
Sbjct: 109 VLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQEN 168
Query: 186 PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEF 245
++ + V D GG S+ + G +D +R+ +
Sbjct: 169 FKNKNVAVIDFGGLNMGFSLYR----NCVVNPSERFIEE---HGVKDLIIRVGD----AL 217
Query: 246 KIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSK 305
N +L + A L K E+ T I +
Sbjct: 218 TDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVI--------------------KKV 257
Query: 306 LESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKD 365
E ++D I + ++ +I +GG T+ +++ +S+ +
Sbjct: 258 KEKFLKDAIKL--------IEKRGFKLDQLDSLIFIGGTTQ--KLKEQISKTYPNNSIIT 307
Query: 366 INPDEAVAVG 375
N G
Sbjct: 308 NNSQWTTCEG 317
Score = 62.0 bits (150), Expect = 4e-10
Identities = 33/250 (13%), Positives = 70/250 (28%), Gaps = 55/250 (22%)
Query: 780 VITVPA--YFNDSQRQATKDA------------GKIAGLEVLRIINEPTAAALAYGLDKK 825
V+ P N ++ +D K E+ I + + + + +
Sbjct: 109 VLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQEN 168
Query: 826 PDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEF 885
++ + V D GG S+ + G +D +R+ +
Sbjct: 169 FKNKNVAVIDFGGLNMGFSLYR----NCVVNPSERFIEE---HGVKDLIIRVGD----AL 217
Query: 886 KIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSK 945
N +L + A L K E+ T I +
Sbjct: 218 TDLNNGNLITNEQAESALNNGYMKKGGEIDTESSTVI--------------------KKV 257
Query: 946 LESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKD 1005
E ++D I + ++ +I +GG T+ +++ +S+ +
Sbjct: 258 KEKFLKDAIKL--------IEKRGFKLDQLDSLIFIGGTTQ--KLKEQISKTYPNNSIIT 307
Query: 1006 INPDEAVAVG 1015
N G
Sbjct: 308 NNSQWTTCEG 317
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 61.4 bits (149), Expect = 8e-10
Identities = 54/389 (13%), Positives = 128/389 (32%), Gaps = 67/389 (17%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
+ +G+++G + + ++ P + + R TP ++ + P
Sbjct: 14 EALGLEIGASALKLVEVSGNPPAL--KALASRPTPP--------GLL-----MEGMVAEP 58
Query: 64 NNTLYAIKRLI---GRKYTDEIV-----QTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQ 115
IK L+ + + +L+ + + + V + ++ P
Sbjct: 59 AALAQEIKELLLEARTRKRYVVTALSNLAVILRPIQVPKMPLKEMEEAVRWEAERYIPFP 118
Query: 116 ISAEIL--KKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEP 173
I +L + +E E+++ V +A + AGL + + +P
Sbjct: 119 IDEVVLDFAPLTPLSEVQEGEQVQVMVAAARQEAVAGVLEALRG----AGLVPVVLDVKP 174
Query: 174 TAAALAYG-LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGED 232
A + DR+ +V D+G + + ++ + L G+D
Sbjct: 175 FAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR----GDKPLA-----VRVLTLSGKD 225
Query: 233 FDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKN 292
F I + AAE+ K A + +
Sbjct: 226 FTEAIARSFNLDL-------------------LAAEEVKRTYGMATLPTEDEELLLDFDA 266
Query: 293 GPKHLNVKITRSKLESLVEDL---ISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPL 349
+ + + ++ +L + +SL+ + L +A + L+GG +++
Sbjct: 267 ERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEASPEV-----GYLLGGGSKLRG 321
Query: 350 VQKMVSEFFEKEVKKDINPDEAVAVGASV 378
+ ++++ ++ +NP EAVAV
Sbjct: 322 LASLLTDTLGVNLEP-VNPWEAVAVDPKR 349
Score = 52.9 bits (127), Expect = 3e-07
Identities = 36/230 (15%), Positives = 79/230 (34%), Gaps = 38/230 (16%)
Query: 793 QATKDAGKIAGLEVLRIINEPTAAALAYG-LDKKPDDRIIVVYDLGGGTFDISVIEIANV 851
+A + AGL + + +P A + DR+ +V D+G + + ++
Sbjct: 154 AGVLEALRGAGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLLR---- 209
Query: 852 DGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAK 911
+ L G+DF I + AAE+ K
Sbjct: 210 GDKPLA-----VRVLTLSGKDFTEAIARSFNLDL-------------------LAAEEVK 245
Query: 912 IELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVEDL---ISKSLKPCEVALNDA 968
A + + + + + ++ +L + +SL+ + L +A
Sbjct: 246 RTYGMATLPTEDEELLLDFDAERERYSPGRIYDAIRPVLVELTQELRRSLEFFRIQLEEA 305
Query: 969 KIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASV 1018
+ L+GG +++ + ++++ ++ +NP EAVAV
Sbjct: 306 SPEV-----GYLLGGGSKLRGLASLLTDTLGVNLEP-VNPWEAVAVDPKR 349
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange
factor, coiled-coil, complex (HSP24/HSP70); 2.80A
{Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Length = 197
Score = 58.5 bits (142), Expect = 1e-09
Identities = 39/174 (22%), Positives = 68/174 (39%), Gaps = 15/174 (8%)
Query: 488 TAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEK 547
++K++KT + Q+ EIE AE D+K L E +
Sbjct: 2 SSKEQKTPEGQAPEEIIMDQHEEIEAVEPEASAEQVDPRDEKVANLEAQLAEAQTRERDG 61
Query: 548 FCSFVLETKKETD-----YDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKE 602
L K E + + D K + +E I EL+P+ DS++ A +
Sbjct: 62 I----LRVKAEMENLRRRTELDI-EKAHKFALEKFINELLPVIDSLDR-ALEVADKANPD 115
Query: 603 SEIIF----LIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGT 652
+ L K + +KF ++ I+ET V +P++H+AI + + G
Sbjct: 116 MSAMVEDIELTLKSMLDVVRKFGVEVIAETNVPLDPNVHQAIAMVESDDVAPGN 169
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle,
dimer, chaperone, STRE response; 3.23A {Thermus
thermophilus}
Length = 177
Score = 51.5 bits (124), Expect = 2e-07
Identities = 22/139 (15%), Positives = 57/139 (41%), Gaps = 6/139 (4%)
Query: 510 EIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLET---KKETDYDEDKI 566
+ KD E + + EE +K E++ L++K+ + + +K + +
Sbjct: 4 RNHENTLEKDLEAVGQEAQALEERLKAAEEELKGLKDKYLRLLADFDNYRKRMEEELKAR 63
Query: 567 RKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNIKQIS 626
+ + + L+P+ D ++ + +++ + + I + ++++
Sbjct: 64 ER---EGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAIRDGFFRILAGLGVEEVP 120
Query: 627 ETGVLFNPDIHEAIGIYPT 645
G F+P HEA+G+ P
Sbjct: 121 GEGEAFDPRYHEAVGLLPG 139
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 52.9 bits (128), Expect = 3e-07
Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 82/281 (29%)
Query: 6 IGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGY-TEDNRII-VGLPAKRQAITNP 63
IGIDLGT N+ V + GK V+ +E PSV+ + I+ VGL AK
Sbjct: 6 IGIDLGTANTLVFL--RGKGIVV--NE-----PSVIAIDSTTGEILKVGLEAKN------ 50
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV---KDKKLAPPQISAEI 120
+IG+ P I A + +D +A ++ +
Sbjct: 51 ---------MIGK-------------TPATIKA---------IRPMRDGVIADYTVALVM 79
Query: 121 LK---KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAA 177
L+ ++ VI VP D +R+A DAG AG + +I EP AAA
Sbjct: 80 LRYFINKAKGGMNLFKPRV---VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAA 136
Query: 178 LAYGLD-KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMR 236
+ L+ ++P ++V D+GGGT +++VI + ++ V + + G++ D
Sbjct: 137 IGSNLNVEEPSGNMVV--DIGGGTTEVAVISLGSI-------VTWES--IRIAGDEMDEA 185
Query: 237 IINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNA 277
I+ ++ +++ G+ AE+ KIE+ N
Sbjct: 186 IVQYVRETYRV-----AIGER--------TAERVKIEIGNV 213
Score = 46.7 bits (112), Expect = 3e-05
Identities = 39/139 (28%), Positives = 69/139 (49%), Gaps = 25/139 (17%)
Query: 780 VITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD-KKPDDRIIVVYDLGG 838
VI VP D +R+A DAG AG + +I EP AAA+ L+ ++P ++V D+GG
Sbjct: 99 VIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAIGSNLNVEEPSGNMVV--DIGG 156
Query: 839 GTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSL 898
GT +++VI + ++ V + + G++ D I+ ++ +++ G+
Sbjct: 157 GTTEVAVISLGSI-------VTWES--IRIAGDEMDEAIVQYVRETYRV-----AIGER- 201
Query: 899 AMQRLKEAAEKAKIELSNA 917
AE+ KIE+ N
Sbjct: 202 -------TAERVKIEIGNV 213
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A
{Geobacillus kaustophilus}
Length = 213
Score = 48.6 bits (116), Expect = 3e-06
Identities = 27/172 (15%), Positives = 69/172 (40%), Gaps = 16/172 (9%)
Query: 488 TAKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEK 547
A + + + ++ +GG E AE + + EL ++ +E +
Sbjct: 26 EAAPQPEEESGGVPLEEAGGEEAAEPAEKAPTAEELAAAKAQIAEL----EAKLSEMEHR 81
Query: 548 FCSFVLETKKETD-----YDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKE 602
+ L + + ++ ++ +++ +L+P+ D+ E K N+ +
Sbjct: 82 Y----LRLYADFENFRRRTRQEM-EAAEKYRAQSLASDLLPVLDNFERALKIETDNEQAK 136
Query: 603 S--EIIFLIFKLIKKFYKKFNIKQISETGVLFNPDIHEAIGIYPTFGKKKGT 652
S + + ++++ + KK ++ I G F+P +H+A+ G + T
Sbjct: 137 SILQGMEMVYRSLVDALKKEGVEAIEAVGKPFDPYLHQAVMQAEAEGYEPNT 188
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 48.9 bits (117), Expect = 7e-06
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 287 ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 346
+T ++L R+ +E + S + C + I+ I+L+GG +
Sbjct: 389 MTLANTTRENL----ARAFVEG-----LLCSQRDCLELIRSLGA---SITRILLIGGGAK 436
Query: 347 MPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 389
++ + +V + DE VA+GA+ QA + +
Sbjct: 437 SEAIRTLAPSILGMDVTR-PATDEYVAIGAARQAAWVLSGETE 478
Score = 48.9 bits (117), Expect = 7e-06
Identities = 20/103 (19%), Positives = 41/103 (39%), Gaps = 13/103 (12%)
Query: 927 ITADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTR 986
+T ++L R+ +E + S + C + I+ I+L+GG +
Sbjct: 389 MTLANTTRENL----ARAFVEG-----LLCSQRDCLELIRSLGA---SITRILLIGGGAK 436
Query: 987 MPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 1029
++ + +V + DE VA+GA+ QA + +
Sbjct: 437 SEAIRTLAPSILGMDVTR-PATDEYVAIGAARQAAWVLSGETE 478
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 48.4 bits (116), Expect = 1e-05
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 278 EQTDINLPYITA------DKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKID 331
E+T N P ++GP L R+ LE + +L ++ I
Sbjct: 336 ERTPHNNPQAKGVFFGLTHQHGPNEL----ARAVLEG-----VGYALADGMDVVHACGI- 385
Query: 332 KSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDV 390
K + L+GG R ++M+++ +++ D A+GA+ A + + K +
Sbjct: 386 --KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSL 442
Score = 48.4 bits (116), Expect = 1e-05
Identities = 24/119 (20%), Positives = 47/119 (39%), Gaps = 18/119 (15%)
Query: 918 EQTDINLPYITA------DKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKID 971
E+T N P ++GP L R+ LE + +L ++ I
Sbjct: 336 ERTPHNNPQAKGVFFGLTHQHGPNEL----ARAVLEG-----VGYALADGMDVVHACGI- 385
Query: 972 KSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDV 1030
K + L+GG R ++M+++ +++ D A+GA+ A + + K +
Sbjct: 386 --KPQSVTLIGGGARSEYWRQMLADISGQQLDYRTGGDVGPALGAARLAQIAANPEKSL 442
>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum,
manolate, transferase, structural genomi 2; HET: ADP
XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*
Length = 511
Score = 42.6 bits (101), Expect = 7e-04
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 330 IDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 389
+ K+ + +VGG R +M+++ + + G + A V
Sbjct: 398 LGMEKVGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHS 457
Query: 390 V 390
+
Sbjct: 458 I 458
Score = 42.6 bits (101), Expect = 7e-04
Identities = 9/61 (14%), Positives = 21/61 (34%)
Query: 970 IDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 1029
+ K+ + +VGG R +M+++ + + G + A V
Sbjct: 398 LGMEKVGLLKVVGGGARSEAWLRMIADNLNVSLLVKPDAHLHPLRGLAALAAVELEWSHS 457
Query: 1030 V 1030
+
Sbjct: 458 I 458
>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics,
protein structure initiative; HET: MSE XUL EPE; 1.61A
{Yersinia pseudotuberculosis} PDB: 3gg4_A*
Length = 554
Score = 41.9 bits (99), Expect = 0.001
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 334 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDV 390
I ++ GG T+ P+ + + + EA+ +G+++ V +GV + +
Sbjct: 442 NIDTMMASGGGTKNPIFVQEHANATGCAMLL-PEESEAMLLGSAMMGTVAAGVFESL 497
Score = 41.9 bits (99), Expect = 0.001
Identities = 11/57 (19%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 974 KISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKDV 1030
I ++ GG T+ P+ + + + EA+ +G+++ V +GV + +
Sbjct: 442 NIDTMMASGGGTKNPIFVQEHANATGCAMLL-PEESEAMLLGSAMMGTVAAGVFESL 497
>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO
11200H, transferase, PSI-2; 2.30A {Rhodospirillum
rubrum}
Length = 508
Score = 39.5 bits (93), Expect = 0.006
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 301 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 360
+ R+ LE+ ++ + + L+D G TR + ++++ ++
Sbjct: 375 LWRALLEA-----VALAFRHHVAVLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQR 426
Query: 361 EVKKDINPDEAVAVGASVQAGVLSGVVKDV 390
V+ + AVGA+ A + G
Sbjct: 427 PVQL-LANPLGSAVGAAWVAAIGGGDDLGW 455
Score = 39.5 bits (93), Expect = 0.006
Identities = 15/90 (16%), Positives = 34/90 (37%), Gaps = 9/90 (10%)
Query: 941 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 1000
+ R+ LE+ ++ + + L+D G TR + ++++ ++
Sbjct: 375 LWRALLEA-----VALAFRHHVAVLDDIGH---APQRFFASDGGTRSRVWMGIMADVLQR 426
Query: 1001 EVKKDINPDEAVAVGASVQAGVLSGVVKDV 1030
V+ + AVGA+ A + G
Sbjct: 427 PVQL-LANPLGSAVGAAWVAAIGGGDDLGW 455
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 39.3 bits (92), Expect = 0.007
Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 46/213 (21%)
Query: 162 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQF-EVL 220
++ + + A L DR +VV +LG + + +G +
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEKDRGVVVVNLGYNFTGLIAYK----NGVPIKISYV 234
Query: 221 STNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT 280
+G + +I D+ S + E +E+ I NA
Sbjct: 235 P------VGMKH----VIK------------DV---SAVLDTSFEESERLIITHGNAVYN 269
Query: 281 DIN---LPYITADKNGPKHLNVKITRSKLESLVE-------DLISKSLKPCEVALNDAKI 330
D+ + Y D N K T KL ++ K + E + +
Sbjct: 270 DLKEEEIQYRGLDGNTIK----TTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGE 325
Query: 331 DKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
++L GG ++P + ++ +E F+ V+
Sbjct: 326 IG-IPGGVVLTGGGAKIPRINELATEVFKSPVR 357
Score = 39.3 bits (92), Expect = 0.007
Identities = 35/213 (16%), Positives = 69/213 (32%), Gaps = 46/213 (21%)
Query: 802 AGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQF-EVL 860
++ + + A L DR +VV +LG + + +G +
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEKDRGVVVVNLGYNFTGLIAYK----NGVPIKISYV 234
Query: 861 STNGDTFLGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQT 920
+G + +I D+ S + E +E+ I NA
Sbjct: 235 P------VGMKH----VIK------------DV---SAVLDTSFEESERLIITHGNAVYN 269
Query: 921 DIN---LPYITADKNGPKHLNVKITRSKLESLVE-------DLISKSLKPCEVALNDAKI 970
D+ + Y D N K T KL ++ K + E + +
Sbjct: 270 DLKEEEIQYRGLDGNTIK----TTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGE 325
Query: 971 DKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 1003
++L GG ++P + ++ +E F+ V+
Sbjct: 326 IG-IPGGVVLTGGGAKIPRINELATEVFKSPVR 357
Score = 29.3 bits (66), Expect = 9.9
Identities = 9/72 (12%), Positives = 20/72 (27%), Gaps = 19/72 (26%)
Query: 5 IIGIDLGTTNSCVAV--LNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITN 62
ID+G+ V + + + + + S GL I +
Sbjct: 10 YTSIDIGSRYIKGLVLGKRDQEWEAL----AFSSVKS-----------RGL--DEGEIKD 52
Query: 63 PNNTLYAIKRLI 74
++ L+
Sbjct: 53 AIAFKESVNTLL 64
>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose,
transferase, structural genomics, PSI-2, protein
structure initiative; HET: ATP DXP XUL ADP; 2.00A
{Lactobacillus acidophilus} PDB: 3gbt_A*
Length = 504
Score = 39.5 bits (93), Expect = 0.008
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 301 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 360
+ R+ +E I +L L K I GG + V+++ + F
Sbjct: 368 MARAVIEG-----IIFNLYDAASNLIKNTK---KPVAINATGGFLKSDFVRQLCANIFNV 419
Query: 361 EVKKDINPDEAVAVGASVQAGVLSGVVKDV 390
+ + ++ + A A G+ +D+
Sbjct: 420 PIVT-MKEQQSGTLAAMFLARQALGLNQDL 448
Score = 39.5 bits (93), Expect = 0.008
Identities = 15/90 (16%), Positives = 32/90 (35%), Gaps = 9/90 (10%)
Query: 941 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 1000
+ R+ +E I +L L K I GG + V+++ + F
Sbjct: 368 MARAVIEG-----IIFNLYDAASNLIKNTK---KPVAINATGGFLKSDFVRQLCANIFNV 419
Query: 1001 EVKKDINPDEAVAVGASVQAGVLSGVVKDV 1030
+ + ++ + A A G+ +D+
Sbjct: 420 PIVT-MKEQQSGTLAAMFLARQALGLNQDL 448
>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer,
hexokinas actin superfamily, L-rhamnulose kinase,
rhamnose metabolism kinase; HET: LRH ADP; 1.55A
{Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*
Length = 489
Score = 37.3 bits (87), Expect = 0.036
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 301 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 360
+ R +SL L A++ S++ +VGG + L+ ++ ++
Sbjct: 367 LARCIFDSLAL-----LYADVLHEL--AQLRGEDFSQLHIVGGGCQNTLLNQLCADACGI 419
Query: 361 EVKKDINPDEAVAVGASVQAGVLSGVVKDV 390
V P EA +G + + +V
Sbjct: 420 RVI--AGPVEASTLGNIGIQLMTLDELNNV 447
Score = 37.3 bits (87), Expect = 0.036
Identities = 16/90 (17%), Positives = 33/90 (36%), Gaps = 9/90 (10%)
Query: 941 ITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK 1000
+ R +SL L A++ S++ +VGG + L+ ++ ++
Sbjct: 367 LARCIFDSLAL-----LYADVLHEL--AQLRGEDFSQLHIVGGGCQNTLLNQLCADACGI 419
Query: 1001 EVKKDINPDEAVAVGASVQAGVLSGVVKDV 1030
V P EA +G + + +V
Sbjct: 420 RVI--AGPVEASTLGNIGIQLMTLDELNNV 447
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 36.6 bits (85), Expect = 0.062
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 334 KISEIILVGG-QTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 389
++ E+ GG + L+ ++ ++ +E+K + A+GA++ A V +G
Sbjct: 439 EVHELYACGGLPQKNHLLMQIFADVTNREIKV-AASKQTPALGAAMFASVAAGSEVG 494
Score = 36.6 bits (85), Expect = 0.062
Identities = 12/57 (21%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Query: 974 KISEIILVGG-QTRMPLVQKMVSEFFEKEVKKDINPDEAVAVGASVQAGVLSGVVKD 1029
++ E+ GG + L+ ++ ++ +E+K + A+GA++ A V +G
Sbjct: 439 EVHELYACGGLPQKNHLLMQIFADVTNREIKV-AASKQTPALGAAMFASVAAGSEVG 494
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.28
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 359 EK-EVKK---DIN---PDEA--VAVGASVQ 379
EK +KK + D A +A+ A+++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 33.0 bits (74), Expect = 0.28
Identities = 8/30 (26%), Positives = 15/30 (50%), Gaps = 9/30 (30%)
Query: 999 EK-EVKK---DIN---PDEA--VAVGASVQ 1019
EK +KK + D A +A+ A+++
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 30.3 bits (67), Expect = 2.0
Identities = 7/29 (24%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 618 KKFNIKQISETGV-LFNPDIHEAIGIYPT 645
+K +K++ + + L+ D A+ I T
Sbjct: 18 EKQALKKL-QASLKLYADDSAPALAIKAT 45
Score = 29.5 bits (65), Expect = 3.5
Identities = 7/20 (35%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 1202 EKESIEKSISNLELLIKGDD 1221
EK++++K ++L+L DD
Sbjct: 18 EKQALKKLQASLKLY--ADD 35
>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar
kinase, RIBO H fold, sugar kinase/HSP70/actin
superfamily, domain rotati conformation; HET: NAG NDG;
1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB:
2ch6_A*
Length = 347
Score = 32.3 bits (73), Expect = 0.94
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGL--PAKRQAITN 62
G++ G T +L + +++ ++G T ++G + I + AKR+A +
Sbjct: 8 YGGVEGGGT-RSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVD 66
Query: 63 PNNTLYAI 70
P L ++
Sbjct: 67 PLVPLRSL 74
>2if6_A Hypothetical protein YIIX; structural genomics, metalloprotein,
PSI-2, PR structure initiative, NEW YORK SGX research
center for STRU genomics; 1.80A {Escherichia coli} SCOP:
d.3.1.21
Length = 186
Score = 31.6 bits (71), Expect = 1.1
Identities = 15/70 (21%), Positives = 25/70 (35%), Gaps = 2/70 (2%)
Query: 659 VLNNGKPQVIENSEGGRTTP--SVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGR 716
V+ N KP V E + TP + + E + +V ++ KR +G+
Sbjct: 38 VMRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQKLAQTAKRYLGK 97
Query: 717 KYTDEIVQKD 726
Y D
Sbjct: 98 PYDFSFSWSD 107
Score = 31.2 bits (70), Expect = 1.2
Identities = 14/63 (22%), Positives = 24/63 (38%), Gaps = 2/63 (3%)
Query: 19 VLNNGKPQVIENSEGGRTTP--SVVGYTEDNRIIVGLPAKRQAITNPNNTLYAIKRLIGR 76
V+ N KP V E + TP + + E + +V ++ KR +G+
Sbjct: 38 VMRNKKPYVFEAVGPVKYTPLKQWIAHGEKGKYVVRRVEGGLSVEQQQKLAQTAKRYLGK 97
Query: 77 KYT 79
Y
Sbjct: 98 PYD 100
>3k7n_A K-like; SVMP, hydrolase; HET: NAG FUC FUL; 2.30A {Naja atra}
Length = 397
Score = 31.9 bits (72), Expect = 1.3
Identities = 6/44 (13%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 579 IELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKFNI 622
IE I D+ M+ +++++ ++ + + ++ I
Sbjct: 11 IEFYVIVDN-RMYRY-YNNDKPAIKIKVYEMINAVNTKFRPLKI 52
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 31.3 bits (70), Expect = 1.5
Identities = 13/84 (15%), Positives = 31/84 (36%), Gaps = 14/84 (16%)
Query: 1152 EIENMIKDAELNSE-LDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSI 1210
E E++ K E + L + + E ++ K + + + E +EK+
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQE-------WREKAKKDLEEWNQRQSEQVEKNK 135
Query: 1211 -SNLELLIKGDDIELIKKGNEDLL 1233
+N D ++ + D++
Sbjct: 136 INNRI-----ADKAFYQQPDADII 154
Score = 29.7 bits (66), Expect = 3.8
Identities = 13/68 (19%), Positives = 27/68 (39%), Gaps = 12/68 (17%)
Query: 508 LSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKET-DYDEDKI 566
L E++ + + + E + K EE + ++EQ+ EK K D+
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWNQRQSEQV----EK-------NKINNRIADKAFY 146
Query: 567 RKLKEIVI 574
++ +I
Sbjct: 147 QQPDADII 154
Score = 29.4 bits (65), Expect = 5.5
Identities = 7/53 (13%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 260 MQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVED 312
+Q L A++ + E + D+ + + ++ ++K+ + + D
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWN--------QRQSEQVEKNKINNRIAD 142
Score = 29.4 bits (65), Expect = 5.5
Identities = 7/53 (13%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 900 MQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLVED 952
+Q L A++ + E + D+ + + ++ ++K+ + + D
Sbjct: 98 LQELDAASKVMEQEWREKAKKDLEEWN--------QRQSEQVEKNKINNRIAD 142
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 30.3 bits (68), Expect = 2.4
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 467 PRGVPQIEVSFDLDANGILNVTA-KDKKTGKEQSIIIKSSG 506
P V + ++ L ++G+L V + + +G E++I I
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREE 165
Score = 30.3 bits (68), Expect = 2.4
Identities = 10/41 (24%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 1107 PRGVPQIEVSFDLDANGILNVTA-KDKKTGKEQSIIIKSSG 1146
P V + ++ L ++G+L V + + +G E++I I
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPITREE 165
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system,
helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP;
2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Length = 1038
Score = 31.0 bits (70), Expect = 3.1
Identities = 29/180 (16%), Positives = 64/180 (35%), Gaps = 16/180 (8%)
Query: 446 RKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKE----QSII 501
R+K ++ K D +D+ + E++ D I ++K G+ + +I
Sbjct: 859 REKEAEKKEKSTTDWDDVVFEVDLLKSQEINLDYILGLIFEHNRQNKGKGEMIEEVKRLI 918
Query: 502 IKSSGGLSEIE-IENMIKDAELNSELDKK--FEELVKCKNEQIIILEEKFCSFVLETKKE 558
S G ++ + + I+ L+ DK + + E KE
Sbjct: 919 RSSLGNRAKEGLVVDFIQQTNLDDLPDKASIIDAFFTFAQREQQREAEALI-------KE 971
Query: 559 TDYDEDKIRKLKEIVI--ENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKF 616
+ +ED ++ + E + +++ + +TK+ + I I+KF
Sbjct: 972 ENLNEDAAKRYIRTSLKREYATENGTELNETLPKLSPLNPQYKTKKQAVFQKIVSFIEKF 1031
>3av4_A DNA (cytosine-5)-methyltransferase 1; CXXC-type zinc
finger/C5-methyltransferase family; HET: DNA; 2.75A {Mus
musculus} PDB: 3av5_A* 3av6_A*
Length = 1330
Score = 31.1 bits (69), Expect = 3.1
Identities = 13/143 (9%), Positives = 44/143 (30%), Gaps = 12/143 (8%)
Query: 489 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKF 548
++ ++ + ++ + + L+ K + +E ++ EK
Sbjct: 45 PVQSRSERKAAQSKSVIPKINSPKCPECGQH--LDDPNLKYQQHPEDAVDEPQMLTSEKL 102
Query: 549 CSFVLETKKETDYDEDKIRKLKEIVI-----ENIIIELIPITDSMEMFA-----KNFDSN 598
+ + Y++ + + + ++ I ++E++ D N
Sbjct: 103 SIYDSTSTWFDTYEDSPMHRFTSFSVYCSRGHLCPVDTGLIEKNVELYFSGCAKAIHDEN 162
Query: 599 QTKESEIIFLIFKLIKKFYKKFN 621
+ E I I +++
Sbjct: 163 PSMEGGINGKNLGPINQWWLSGF 185
>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break
repair, V(D)J recombination, protein-protein complex,
coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP:
b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*
Length = 213
Score = 30.2 bits (67), Expect = 3.2
Identities = 14/55 (25%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 521 ELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIRKLKEIVIE 575
+++ +FE+ V K L ++F VL KK KIR L ++
Sbjct: 153 RDWNDVQGRFEKAVSAKEALETDLYKRFIL-VLNEKKT------KIRSLHNKLLN 200
>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily,
ribonuc fold, sugar kinase, glucose, phosphoryl
transfer, transferase; HET: BGC; 1.65A {Sulfolobus
tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*
Length = 299
Score = 30.2 bits (68), Expect = 4.5
Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 3/65 (4%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPN 64
I+G+D G T AV + + I G VG T I A + A
Sbjct: 4 IVGVDAGGT-KTKAVAYDCEGNFIGEGSSGPGNYHNVGLTRAIENIKE--AVKIAAKGEA 60
Query: 65 NTLYA 69
+ +
Sbjct: 61 DVVGM 65
>3grd_A Uncharacterized NTF2-superfamily protein; NP_977240.1,
NTF2-superfamily protein with unknown function,
structural genomics; HET: MSE; 1.25A {Bacillus cereus
atcc 10987}
Length = 134
Score = 28.8 bits (64), Expect = 5.4
Identities = 8/82 (9%), Positives = 25/82 (30%), Gaps = 5/82 (6%)
Query: 611 KLIKKFYKKFNIKQISETGVLFNPDI-HEAIGIYPTFGKKKGTTNSCVAVLNNGKPQVIE 669
++I+ Y+ + + +P G G A++ N ++
Sbjct: 8 EIIRSTYEGSASSNAKHLAEALSEKVEWTEAEGFPYGGTYIGVE----AIMENVFSRLGS 63
Query: 670 NSEGGRTTPSVVGYTEDNRIIV 691
+ + ++ +I+
Sbjct: 64 EWNDYKASVNMYHEVSGKDVII 85
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 29.9 bits (67), Expect = 6.6
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 160 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEV 219
EV+ E A L + + DLG G+ D +++ N +G+
Sbjct: 381 ARLQTEVVVGGVEANMAIAG-ALTTPGCAAPLAILDLGAGSTDAAIV---NAEGQITAVH 436
Query: 220 LSTNGDT 226
L+ G+
Sbjct: 437 LAGAGNM 443
Score = 29.9 bits (67), Expect = 6.6
Identities = 14/67 (20%), Positives = 25/67 (37%), Gaps = 4/67 (5%)
Query: 800 KIAGLEVLRIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEV 859
EV+ E A L + + DLG G+ D +++ N +G+
Sbjct: 381 ARLQTEVVVGGVEANMAIAG-ALTTPGCAAPLAILDLGAGSTDAAIV---NAEGQITAVH 436
Query: 860 LSTNGDT 866
L+ G+
Sbjct: 437 LAGAGNM 443
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp
contractIle protein-transport protein complex; 24.00A
{Gallus gallus}
Length = 1080
Score = 29.7 bits (67), Expect = 7.5
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 3/83 (3%)
Query: 1151 IEIENMIKDAELN-SELDKKFEELVKCKNEADSTISIVKKNLKD--ENTKITDEEKESIE 1207
I +EN I + E +K+++ L++ N + T S + L+ E ++++EE ++
Sbjct: 924 IGLENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEEEAKNAT 983
Query: 1208 KSISNLELLIKGDDIELIKKGNE 1230
+ +L+ I EL + E
Sbjct: 984 NRVLSLQEEIAKLRKELHQTQTE 1006
>1dlc_A Delta-endotoxin CRYIIIA; 2.50A {Bacillus thuringiensis} SCOP:
b.18.1.3 b.77.2.1 f.1.3.1
Length = 584
Score = 29.4 bits (65), Expect = 7.9
Identities = 13/82 (15%), Positives = 28/82 (34%)
Query: 1152 EIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSIS 1211
++E ++ + +K EL +N + +S + K+ + + I + S
Sbjct: 52 QVEALMDQKIADYAKNKALAELQGLQNNVEDYVSALSSWQKNPVSSRNPHSQGRIRELFS 111
Query: 1212 NLELLIKGDDIELIKKGNEDLL 1233
E + G E L
Sbjct: 112 QAESHFRNSMPSFAISGYEVLF 133
>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 2.30A
{Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5
Length = 291
Score = 28.9 bits (64), Expect = 9.0
Identities = 14/101 (13%), Positives = 29/101 (28%), Gaps = 3/101 (2%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTE-DNRIIVGLPAKRQAITNP 63
I+ D G+T + + GK + + P E D + + +
Sbjct: 2 ILIGDSGSTKTDWCIAKEGK--SLGRFQTSGINPFQQDRNEIDTALRSEVLPAIGQKASS 59
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWV 104
+Y + + + M+P+ GD
Sbjct: 60 IRAVYFYGAGCTPAKAPMLNEALDSMLPHCDRIEVAGDMLG 100
>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A
{Thermus thermophilus}
Length = 302
Score = 29.1 bits (66), Expect = 9.4
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 4 KIIGIDLGTTNSCVAVLNNGK 24
K++G+DLG T V + +
Sbjct: 2 KVVGLDLGGTKIAAGVFDGKR 22
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.313 0.133 0.358
Gapped
Lambda K H
0.267 0.0622 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 18,581,743
Number of extensions: 1235769
Number of successful extensions: 3099
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2945
Number of HSP's successfully gapped: 190
Length of query: 1242
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1137
Effective length of database: 3,770,088
Effective search space: 4286590056
Effective search space used: 4286590056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 63 (28.3 bits)