RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5911
(1242 letters)
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 263 bits (673), Expect = 7e-82
Identities = 132/182 (72%), Positives = 159/182 (87%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
KIIGIDLGTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP
Sbjct: 1 KIIGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNP 60
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILKK 123
NTL+AIKRLIGR++ DE VQ + ++P+KI+AADNGDAWVEVK +K+APPQISAE+LKK
Sbjct: 61 QNTLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKK 120
Query: 124 MKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 183
MK TAE +L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLD
Sbjct: 121 MKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLD 180
Query: 184 KK 185
K
Sbjct: 181 KG 182
Score = 246 bits (628), Expect = 1e-75
Identities = 126/175 (72%), Positives = 152/175 (86%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
GTTNSCVA+++ P+V+EN+EG RTTPS++ YT+D +VG PAKRQA+TNP NTL+AI
Sbjct: 8 GTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQNTLFAI 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAET 770
KRLIGR++ DE VQ+D+ ++P+KI+AADNGDAWVEVK Q APPQISAE+LKKMK TAE
Sbjct: 68 KRLIGRRFQDEEVQRDVSIMPFKIIAADNGDAWVEVKGQKMAPPQISAEVLKKMKKTAED 127
Query: 771 FLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 825
+L E + +AVITVPAYFND+QRQATKDAG+IAGLEV RIINEPTAAALAYGLDK
Sbjct: 128 YLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGLDKG 182
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 260 bits (665), Expect = 1e-80
Identities = 138/197 (70%), Positives = 169/197 (85%)
Query: 188 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 247
+R I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK
Sbjct: 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKK 61
Query: 248 ENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLE 307
+ G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLE
Sbjct: 62 DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 308 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDIN 367
SLVEDL+++S++ +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+N
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 368 PDEAVAVGASVQAGVLS 384
PDEAVA+GA+VQ GVL+
Sbjct: 182 PDEAVAIGAAVQGGVLT 198
Score = 260 bits (665), Expect = 1e-80
Identities = 138/197 (70%), Positives = 169/197 (85%)
Query: 828 DRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKI 887
+R I VYDLGGGTFDIS+IEI VDGE FEVL+TNGDT LGGEDFD R+IN+L+ EFK
Sbjct: 2 NRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFKK 61
Query: 888 ENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLE 947
+ G+DL D LAMQRLKEAAEKAKIELS+A+QTD+NLPYITAD GPKH+N+K+TR+KLE
Sbjct: 62 DQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKVTRAKLE 121
Query: 948 SLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDIN 1007
SLVEDL+++S++ +VAL DA + S I ++ILVGGQTRMP+VQK V+EFF KE +KD+N
Sbjct: 122 SLVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFFGKEPRKDVN 181
Query: 1008 PDEAVAVGASVQAGVLS 1024
PDEAVA+GA+VQ GVL+
Sbjct: 182 PDEAVAIGAAVQGGVLT 198
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 230 bits (587), Expect = 4e-70
Identities = 100/186 (53%), Positives = 130/186 (69%), Gaps = 6/186 (3%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNP 63
+GIDLG+T SCV V +GK ++I N +G RTTPS V +T+ R+ +G AK Q NP
Sbjct: 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNP 60
Query: 64 NNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEV----KDKKLAPPQISAE 119
NT++ KRLIGR++ D +VQ+ +K P+ +V D G V+V + K P ++S+
Sbjct: 61 TNTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSM 119
Query: 120 ILKKMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALA 179
+L KMK AE +L + + AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+A
Sbjct: 120 VLTKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIA 179
Query: 180 YGLDKK 185
YGLDKK
Sbjct: 180 YGLDKK 185
Score = 215 bits (549), Expect = 5e-65
Identities = 96/179 (53%), Positives = 125/179 (69%), Gaps = 6/179 (3%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLPAKRQAITNPNNTLYAI 710
G+T SCV V +GK ++I N +G RTTPS V +T+ R+ +G AK Q NP NT++
Sbjct: 9 GSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERL-IGDAAKNQVAMNPTNTVFDA 67
Query: 711 KRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEV----KDQYCAPPQISAEILKKMKS 766
KRLIGR++ D +VQ D+K P+ +V D G V+V + + P ++S+ +L KMK
Sbjct: 68 KRLIGRRFDDAVVQSDMKHWPFMVVN-DAGRPKVQVEYKGETKSFYPEEVSSMVLTKMKE 126
Query: 767 TAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLDKK 825
AE +L + + AV+TVPAYFNDSQRQATKDAG IAGL VLRIINEPTAAA+AYGLDKK
Sbjct: 127 IAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGLDKK 185
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 217 bits (554), Expect = 1e-65
Identities = 95/199 (47%), Positives = 133/199 (66%), Gaps = 9/199 (4%)
Query: 187 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFK 246
+R ++++DLGGGTFD+S++ I + FEV ST GDT LGGEDFD R++NH I EFK
Sbjct: 3 AERNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 247 IENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 306
++ D+S + A++RL+ A E+AK LS++ Q I + + ITR++
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARF 114
Query: 307 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKD 365
E L DL +L P E AL DAK+DKS+I +I+LVGG TR+P +QK++ +FF KE+ K
Sbjct: 115 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 174
Query: 366 INPDEAVAVGASVQAGVLS 384
INPDEAVA GA+VQA +LS
Sbjct: 175 INPDEAVAYGAAVQAAILS 193
Score = 217 bits (554), Expect = 1e-65
Identities = 95/199 (47%), Positives = 133/199 (66%), Gaps = 9/199 (4%)
Query: 827 DDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFK 886
+R ++++DLGGGTFD+S++ I + FEV ST GDT LGGEDFD R++NH I EFK
Sbjct: 3 AERNVLIFDLGGGTFDVSILTI----EDGIFEVKSTAGDTHLGGEDFDNRMVNHFIAEFK 58
Query: 887 IENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKL 946
++ D+S + A++RL+ A E+AK LS++ Q I + + ITR++
Sbjct: 59 RKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEG----IDFYTSITRARF 114
Query: 947 ESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFF-EKEVKKD 1005
E L DL +L P E AL DAK+DKS+I +I+LVGG TR+P +QK++ +FF KE+ K
Sbjct: 115 EELNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKS 174
Query: 1006 INPDEAVAVGASVQAGVLS 1024
INPDEAVA GA+VQA +LS
Sbjct: 175 INPDEAVAYGAAVQAAILS 193
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 196 bits (500), Expect = 1e-58
Identities = 91/159 (57%), Positives = 113/159 (71%), Gaps = 1/159 (0%)
Query: 1024 SGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQ 1083
S V+D+LLLDVTPL+LGIET GGVMT LI++NTTIPT++TQ F+T DNQ V I +
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 1084 GERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIK 1143
GER N LGKF+L I PAPRGVPQIEV+FD+DANGILNV+A DK TGKE I I
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 1144 S-SGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEAD 1181
+ G LS+ +IE M+++AE D+K + V KN +
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
Score = 193 bits (492), Expect = 1e-57
Identities = 91/157 (57%), Positives = 112/157 (71%), Gaps = 1/157 (0%)
Query: 384 SGVVKDVLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQ 443
S V+D+LLLDVTPL+LGIET GGVMT LI++NTTIPT++TQ F+T DNQ V I +
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 444 GERKKASQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIK 503
GER N LGKF+L I PAPRGVPQIEV+FD+DANGILNV+A DK TGKE I I
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 504 S-SGGLSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
+ G LS+ +IE M+++AE D+K + V KN
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNS 157
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 172 bits (437), Expect = 8e-51
Identities = 88/118 (74%), Positives = 108/118 (91%)
Query: 390 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKA 449
VLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDNQ++V+IH LQGERK+A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 450 SQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 507
+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK +GKEQ I IK+S G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
Score = 172 bits (437), Expect = 8e-51
Identities = 88/118 (74%), Positives = 108/118 (91%)
Query: 1030 VLLLDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKA 1089
VLLLDVTPL+LGIETMGGVMT LI KNTTIPT+ +QVFSTAEDNQ++V+IH LQGERK+A
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 1090 SQNKSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 1147
+ NKSLG+F+L+ I+PAPRG+PQIEV+FD+DA+GIL+V+AKDK +GKEQ I IK+S G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 155 bits (392), Expect = 1e-44
Identities = 55/115 (47%), Positives = 79/115 (68%)
Query: 393 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN 452
+DV PL+LG+ETMGG++ +I +NTTIP + Q F+T +D QT+++IH +QGER+
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 453 KSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 507
+SL +F L I P G I V+F +DA+G+L+VTA +K TG E SI +K S G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
Score = 155 bits (392), Expect = 1e-44
Identities = 55/115 (47%), Positives = 79/115 (68%)
Query: 1033 LDVTPLTLGIETMGGVMTPLIEKNTTIPTRKTQVFSTAEDNQTSVTIHTLQGERKKASQN 1092
+DV PL+LG+ETMGG++ +I +NTTIP + Q F+T +D QT+++IH +QGER+
Sbjct: 1 MDVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDC 60
Query: 1093 KSLGKFDLNDISPAPRGVPQIEVSFDLDANGILNVTAKDKKTGKEQSIIIKSSGG 1147
+SL +F L I P G I V+F +DA+G+L+VTA +K TG E SI +K S G
Sbjct: 61 RSLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 118 bits (296), Expect = 1e-31
Identities = 42/181 (23%), Positives = 64/181 (35%), Gaps = 45/181 (24%)
Query: 4 KIIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNR-IIVGLPAKRQAITN 62
K IGIDLGT N+ V + G PSV+ I+ + I
Sbjct: 1 KDIGIDLGTANTLVFLRGKGIVVNE---------PSVIAIDSTTGEILKVGLEAKNMIGK 51
Query: 63 PNNTLYAIKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKKLAPPQISAEILK 122
T+ AI+ + D ++ +L+
Sbjct: 52 TPATIKAIRPMRDGVIADY---------------------------------TVALVMLR 78
Query: 123 KMKSTAETFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGL 182
+ A+ +N + VI VP D +R+A DAG AG + +I EP AAA+ G
Sbjct: 79 YFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GS 136
Query: 183 D 183
+
Sbjct: 137 N 137
Score = 103 bits (258), Expect = 2e-26
Identities = 37/174 (21%), Positives = 60/174 (34%), Gaps = 45/174 (25%)
Query: 651 GTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNR-IIVGLPAKRQAITNPNNTLYA 709
GT N+ V + G PSV+ I+ + I T+ A
Sbjct: 8 GTANTLVFLRGKGIVVNE---------PSVIAIDSTTGEILKVGLEAKNMIGKTPATIKA 58
Query: 710 IKRLIGRKYTDEIVQKDIKMVPYKIVAADNGDAWVEVKDQYCAPPQISAEILKKMKSTAE 769
I+ ++D A ++ +L+ + A+
Sbjct: 59 IRP---------------------------------MRDGVIADYTVALVMLRYFINKAK 85
Query: 770 TFLNEKIEKAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYGLD 823
+N + VI VP D +R+A DAG AG + +I EP AAA+ G +
Sbjct: 86 GGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GSN 137
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 101 bits (251), Expect = 8e-25
Identities = 26/189 (13%), Positives = 67/189 (35%), Gaps = 21/189 (11%)
Query: 191 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 250
+V D+GGGT +++VI + ++ T + G++ D I+ ++ +++ G
Sbjct: 9 NMVVDIGGGTTEVAVISLGSIV---------TWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 251 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 310
+ +++ + D++ + + ++ +
Sbjct: 60 ERTAERVKIEIGNVFPSKENDELETTVSGIDLS---------TGLPRKLTLKGGEVREAL 110
Query: 311 EDLISKSLKPCEVALNDAKIDKSK---ISEIILVGGQTRMPLVQKMVSEFFEKEVKKDIN 367
++ ++ L + I L GG + + + ++ + V +
Sbjct: 111 RSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEE 170
Query: 368 PDEAVAVGA 376
P AVA GA
Sbjct: 171 PLTAVAKGA 179
Score = 101 bits (251), Expect = 8e-25
Identities = 26/189 (13%), Positives = 67/189 (35%), Gaps = 21/189 (11%)
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
+V D+GGGT +++VI + ++ T + G++ D I+ ++ +++ G
Sbjct: 9 NMVVDIGGGTTEVAVISLGSIV---------TWESIRIAGDEMDEAIVQYVRETYRVAIG 59
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+ +++ + D++ + + ++ +
Sbjct: 60 ERTAERVKIEIGNVFPSKENDELETTVSGIDLS---------TGLPRKLTLKGGEVREAL 110
Query: 951 EDLISKSLKPCEVALNDAKIDKSK---ISEIILVGGQTRMPLVQKMVSEFFEKEVKKDIN 1007
++ ++ L + I L GG + + + ++ + V +
Sbjct: 111 RSVVVAIVESVRTTLEKTPPELVSDIIERGIFLTGGGSLLRGLDTLLQKETGISVIRSEE 170
Query: 1008 PDEAVAVGA 1016
P AVA GA
Sbjct: 171 PLTAVAKGA 179
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 88.0 bits (217), Expect = 1e-20
Identities = 26/200 (13%), Positives = 64/200 (32%), Gaps = 42/200 (21%)
Query: 184 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 243
+ + +++ DLGG T DIS + + GD+ LG + + L
Sbjct: 2 ELDELDSLLIIDLGGTTLDISQVM------GKLSGISKIYGDSSLGVSLVTSAVKDALSL 55
Query: 244 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 303
+ + I + +L +I
Sbjct: 56 ART-------------------------------KGSSYLADDIIIHRKDNNYLKQRIND 84
Query: 304 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 363
S+V + ++++L+ E + + + S + ++++GG + + V + + +
Sbjct: 85 ENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDE 142
Query: 364 KDI---NPDEAVAVGASVQA 380
+ N + G +
Sbjct: 143 RFFKTNNSQYDLVNGMYLIG 162
Score = 88.0 bits (217), Expect = 1e-20
Identities = 26/200 (13%), Positives = 64/200 (32%), Gaps = 42/200 (21%)
Query: 824 KKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIY 883
+ + +++ DLGG T DIS + + GD+ LG + + L
Sbjct: 2 ELDELDSLLIIDLGGTTLDISQVM------GKLSGISKIYGDSSLGVSLVTSAVKDALSL 55
Query: 884 EFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITR 943
+ + I + +L +I
Sbjct: 56 ART-------------------------------KGSSYLADDIIIHRKDNNYLKQRIND 84
Query: 944 SKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVK 1003
S+V + ++++L+ E + + + S + ++++GG + + V + + +
Sbjct: 85 ENKISIVTEAMNEALRKLEQRVLNTLNEFSGYTHVMVIGGGAEL--ICDAVKKHTQIRDE 142
Query: 1004 KDI---NPDEAVAVGASVQA 1020
+ N + G +
Sbjct: 143 RFFKTNNSQYDLVNGMYLIG 162
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 84.4 bits (209), Expect = 3e-20
Identities = 32/92 (34%), Positives = 62/92 (67%)
Query: 1148 LSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIE 1207
L+E EI+ M++DAE N+E D+KFEELV+ +N+ D + +K +++ K+ ++K +IE
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 1208 KSISNLELLIKGDDIELIKKGNEDLLKISENI 1239
+++ LE +KG+D I+ ++L ++S+ +
Sbjct: 61 SALTALETALKGEDKAAIEAKMQELAQVSQKL 92
Score = 40.9 bits (96), Expect = 6e-05
Identities = 18/32 (56%), Positives = 27/32 (84%)
Query: 508 LSEIEIENMIKDAELNSELDKKFEELVKCKNE 539
L+E EI+ M++DAE N+E D+KFEELV+ +N+
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQ 32
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 74.2 bits (182), Expect = 2e-16
Identities = 23/95 (24%), Positives = 53/95 (55%)
Query: 1148 LSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIE 1207
L++ EI +MIKD+ +E D K L + K EA + + L + ++ E++ I+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 1208 KSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
+ ++L + +GDD++ I++ +++ K +++ +
Sbjct: 61 DAAAHLSEVAQGDDVDAIEQAIKNVDKQTQDFAAR 95
Score = 39.1 bits (91), Expect = 4e-04
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 8/74 (10%)
Query: 508 LSEIEIENMIKDAELNSELDKKFEELVKCKNEQIIILEEKFCSFVLETKKETDYDEDKIR 567
L++ EI +MIKD+ +E D K L + K E + D +
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVE--------AARVLESLHGALAADAALLS 52
Query: 568 KLKEIVIENIIIEL 581
+ VI++ L
Sbjct: 53 AAERQVIDDAAAHL 66
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 72.1 bits (176), Expect = 3e-15
Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 45/196 (22%)
Query: 182 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 241
++++P VV D+G T D+ I + +++ V+ + +G D + +
Sbjct: 1 IEQQP--GYGVVIDVGSRTTDVLTINLMDME-----PVVELSFSLQIGVGDAISALSRKI 53
Query: 242 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 301
+ + ++
Sbjct: 54 ---------------------------AKETGFVVPFDLAQEALSHPVMFRQKQVGGPEV 86
Query: 302 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK- 360
+ LE L +I ++ ++ +I VGG + + + E
Sbjct: 87 SGPILEDLANRIIENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGT 137
Query: 361 -EVKKDINPDEAVAVG 375
K + A A+G
Sbjct: 138 LVKIKPEDLQFANALG 153
Score = 72.1 bits (176), Expect = 3e-15
Identities = 24/196 (12%), Positives = 55/196 (28%), Gaps = 45/196 (22%)
Query: 822 LDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHL 881
++++P VV D+G T D+ I + +++ V+ + +G D + +
Sbjct: 1 IEQQP--GYGVVIDVGSRTTDVLTINLMDME-----PVVELSFSLQIGVGDAISALSRKI 53
Query: 882 IYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKI 941
+ + ++
Sbjct: 54 ---------------------------AKETGFVVPFDLAQEALSHPVMFRQKQVGGPEV 86
Query: 942 TRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEK- 1000
+ LE L +I ++ ++ +I VGG + + + E
Sbjct: 87 SGPILEDLANRIIENIRLNLRGEVDR-------VTSLIPVGGGSNL--IGDRFEEIAPGT 137
Query: 1001 -EVKKDINPDEAVAVG 1015
K + A A+G
Sbjct: 138 LVKIKPEDLQFANALG 153
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 191
Score = 42.6 bits (99), Expect = 1e-04
Identities = 24/185 (12%), Positives = 53/185 (28%), Gaps = 23/185 (12%)
Query: 191 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 250
+VV +LG + + +G +G + + L F+
Sbjct: 9 VVVVNLGYNFTGLIAYK----NGVPIK-----ISYVPVGMKHVIKDVSAVLDTSFEE--- 56
Query: 251 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 310
+RL A E+ K I ++L ++
Sbjct: 57 ---------SERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIM 107
Query: 311 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 370
K + E + + ++L GG ++P + ++ +E F+ V+ +
Sbjct: 108 S-KSKKFFREVEAKIVEEGEIGI-PGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANS 165
Query: 371 AVAVG 375
Sbjct: 166 DRPSI 170
Score = 42.6 bits (99), Expect = 1e-04
Identities = 24/185 (12%), Positives = 53/185 (28%), Gaps = 23/185 (12%)
Query: 831 IVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTFLGGEDFDMRIINHLIYEFKIENG 890
+VV +LG + + +G +G + + L F+
Sbjct: 9 VVVVNLGYNFTGLIAYK----NGVPIK-----ISYVPVGMKHVIKDVSAVLDTSFEE--- 56
Query: 891 VDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYITADKNGPKHLNVKITRSKLESLV 950
+RL A E+ K I ++L ++
Sbjct: 57 ---------SERLIITHGNAVYNDLKEEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIM 107
Query: 951 EDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRMPLVQKMVSEFFEKEVKKDINPDE 1010
K + E + + ++L GG ++P + ++ +E F+ V+ +
Sbjct: 108 S-KSKKFFREVEAKIVEEGEIGI-PGGVVLTGGGAKIPRINELATEVFKSPVRTGCYANS 165
Query: 1011 AVAVG 1015
Sbjct: 166 DRPSI 170
>d1dkga1 b.73.1.1 (A:139-197) Head domain of nucleotide exchange
factor GrpE {Escherichia coli [TaxId: 562]}
Length = 59
Score = 36.1 bits (84), Expect = 0.001
Identities = 10/42 (23%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 622 IKQISETGVLFNPDIHEAIGIYPTFGKKKGTTNSCVAVLNNG 663
++ I+ET V +P++H+AI + + G + ++ G
Sbjct: 1 VEVIAETNVPLDPNVHQAIAMVESDDVAPGN---VLGIMQKG 39
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 32.5 bits (73), Expect = 0.28
Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 36/213 (16%)
Query: 168 RIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTF 227
+ ++E + A+ V D+GG + +E + F
Sbjct: 77 KQMSELSCHAMGASFIWPNVH---TVIDIGGQDVKVIHVENGTMTN-------------F 120
Query: 228 LGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYI 287
+ L D+ + L + + ++ A++ + ++ I+
Sbjct: 121 QMNDKCAAGTGRFL----------DVMANILEV----KVSDLAELGAKSTKRVAISSTCT 166
Query: 288 TADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRM 347
++ K + D+I+ + + + ++++ GG +
Sbjct: 167 VFAESEVISQLSK------GTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQN 220
Query: 348 PLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 380
V+ + E E+K A+GA++ A
Sbjct: 221 YGVRGALEEGLGVEIKTSPLAQYNGALGAALYA 253
Score = 32.5 bits (73), Expect = 0.28
Identities = 26/213 (12%), Positives = 67/213 (31%), Gaps = 36/213 (16%)
Query: 808 RIINEPTAAALAYGLDKKPDDRIIVVYDLGGGTFDISVIEIANVDGETQFEVLSTNGDTF 867
+ ++E + A+ V D+GG + +E + F
Sbjct: 77 KQMSELSCHAMGASFIWPNVH---TVIDIGGQDVKVIHVENGTMTN-------------F 120
Query: 868 LGGEDFDMRIINHLIYEFKIENGVDLSGDSLAMQRLKEAAEKAKIELSNAEQTDINLPYI 927
+ L D+ + L + + ++ A++ + ++ I+
Sbjct: 121 QMNDKCAAGTGRFL----------DVMANILEV----KVSDLAELGAKSTKRVAISSTCT 166
Query: 928 TADKNGPKHLNVKITRSKLESLVEDLISKSLKPCEVALNDAKIDKSKISEIILVGGQTRM 987
++ K + D+I+ + + + ++++ GG +
Sbjct: 167 VFAESEVISQLSK------GTDKIDIIAGIHRSVASRVIGLANRVGIVKDVVMTGGVAQN 220
Query: 988 PLVQKMVSEFFEKEVKKDINPDEAVAVGASVQA 1020
V+ + E E+K A+GA++ A
Sbjct: 221 YGVRGALEEGLGVEIKTSPLAQYNGALGAALYA 253
Score = 27.9 bits (61), Expect = 7.4
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 5 IIGIDLGTTNSCVAVLNNGK 24
+GID+G+T S +L +GK
Sbjct: 4 TLGIDVGSTASKCIILKDGK 23
>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK
{Human (Homo sapiens) [TaxId: 9606]}
Length = 117
Score = 30.1 bits (67), Expect = 0.53
Identities = 14/68 (20%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRIIVGLP--AKRQAITN 62
G++ G T +L + +++ ++G T ++G + I + AKR+A +
Sbjct: 5 YGGVEGGGT-RSEVLLVSEDGKILAEADGLSTNHWLIGTDKCVERINEMVNRAKRKAGVD 63
Query: 63 PNNTLYAI 70
P L ++
Sbjct: 64 PLVPLRSL 71
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 30.7 bits (68), Expect = 1.0
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 164 LEVLRIINEPT-AAALAYGLD--KKPDDRIIVVYDLGGGTFDIS 204
+ + EPT A LA L+ + + ++ L GG D S
Sbjct: 268 FTRTKQVVEPTGALPLAAVLEHGARLPQTLALL--LSGGNRDFS 309
Score = 30.7 bits (68), Expect = 1.0
Identities = 12/44 (27%), Positives = 19/44 (43%), Gaps = 5/44 (11%)
Query: 804 LEVLRIINEPT-AAALAYGLD--KKPDDRIIVVYDLGGGTFDIS 844
+ + EPT A LA L+ + + ++ L GG D S
Sbjct: 268 FTRTKQVVEPTGALPLAAVLEHGARLPQTLALL--LSGGNRDFS 309
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase
2C, C-terminal domain {Human (Homo sapiens) [TaxId:
9606]}
Length = 72
Score = 27.7 bits (62), Expect = 1.8
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 1158 KDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDEN 1195
K+AEL+ L+ + EE++K + E + V + L EN
Sbjct: 8 KEAELDKYLECRVEEIIKKQGEGVPDLVHVMRTLASEN 45
>d1tjla1 a.2.14.1 (A:7-110) DnaK suppressor protein DksA,
alpha-hairpin domain {Escherichia coli [TaxId: 562]}
Length = 104
Score = 28.3 bits (63), Expect = 2.2
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 2/83 (2%)
Query: 1158 KDAELNSELDKKF--EELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISNLEL 1215
E +E L +N+ + +++DE D + ++ +LEL
Sbjct: 21 PGEEYMNEAQLAHFRRILEAWRNQLRDEVDRTVTHMQDEAANFPDPVDRAAQEEEFSLEL 80
Query: 1216 LIKGDDIELIKKGNEDLLKISEN 1238
+ + +LIKK + L K+ +
Sbjct: 81 RNRDRERKLIKKIEKTLKKVEDE 103
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 27.9 bits (61), Expect = 3.3
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 5 IIGIDLGTTNSCVAVLNNGKPQVIENSEGGRTTPSVVGYTEDNRI 49
+IGID+G T +++ K +++ T + +
Sbjct: 4 LIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAV 48
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 29.0 bits (64), Expect = 3.8
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 5 IIGIDLGTTNSCVAVLN-NGKPQVIENSEGGRTTPSVVGYTEDN 47
++ ID GTT+S + + NGK E + P G+ E N
Sbjct: 3 VMAIDQGTTSSRAIIFDRNGKKIGSSQKEFPQYFPK-SGWVEHN 45
>d1fc3a_ a.4.6.3 (A:) Spo0A {Bacillus stearothermophilus [TaxId:
1422]}
Length = 119
Score = 27.8 bits (62), Expect = 4.0
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 19/103 (18%)
Query: 596 DSNQTKESEIIFLIFKL-IKKFYKKFNIKQISETGVLFNPDIHEAI--GIYPTFGKKKGT 652
+ + ++ I +I ++ + K + + + V + ++ +I +YP KK T
Sbjct: 1 NKPKNLDASITSIIHEIGVPAHIKGYLYLREAIAMVYHDIELLGSITKVLYPDIAKKYNT 60
Query: 653 TNSCV---------AVLNNGKPQVIE-------NSEGGRTTPS 679
T S V + G + I + + T S
Sbjct: 61 TASRVERAIRHAIEVAWSRGNLESISSLFGYTVSVSKAKPTNS 103
>d2guka1 d.360.1.1 (A:4-114) Hypothetical protein PG1857
{Porphyromonas gingivalis [TaxId: 837]}
Length = 111
Score = 27.4 bits (61), Expect = 4.4
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 232 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRL-KEAAEKAKIELSNAEQTDINLPYITAD 290
+ D+R+ H IYEF+ GV S+ + L + A+ L + +PY
Sbjct: 4 NSDLRVFMHHIYEFE--KGV----RSMVLATLANDDIPYAEERLRSR-----QIPYFAQP 52
Query: 291 KNGPKHLNV 299
+ N+
Sbjct: 53 TPNTERTNL 61
Score = 27.4 bits (61), Expect = 4.4
Identities = 16/69 (23%), Positives = 28/69 (40%), Gaps = 12/69 (17%)
Query: 872 DFDMRIINHLIYEFKIENGVDLSGDSLAMQRL-KEAAEKAKIELSNAEQTDINLPYITAD 930
+ D+R+ H IYEF+ GV S+ + L + A+ L + +PY
Sbjct: 4 NSDLRVFMHHIYEFE--KGV----RSMVLATLANDDIPYAEERLRSR-----QIPYFAQP 52
Query: 931 KNGPKHLNV 939
+ N+
Sbjct: 53 TPNTERTNL 61
>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase
CV2896 {Chromobacterium violaceum [TaxId: 536]}
Length = 114
Score = 27.3 bits (60), Expect = 4.5
Identities = 5/17 (29%), Positives = 10/17 (58%)
Query: 5 IIGIDLGTTNSCVAVLN 21
+IG+D G T + + +
Sbjct: 6 LIGVDGGGTGTRIRLHA 22
>d2p3ra1 c.55.1.4 (A:2-253) Glycerol kinase {Escherichia coli
[TaxId: 562]}
Length = 252
Score = 28.2 bits (62), Expect = 6.0
Identities = 11/44 (25%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Query: 5 IIGIDLGTTNSCVAVLN-NGKPQVIENSEGGRTTPSVVGYTEDN 47
I+ +D GTT+S V++ + + E + P G+ E +
Sbjct: 5 IVALDQGTTSSRAVVMDHDANIISVSQREFEQIYPK-PGWVEHD 47
>d1qopb_ c.79.1.1 (B:) Tryptophan synthase, beta-subunit {Salmonella
typhimurium [TaxId: 90371]}
Length = 390
Score = 28.3 bits (62), Expect = 6.8
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 169 IINEP-TAAALAYGLD----KKPDDRIIVVYDLGGGTFDISVIE 207
II ++ ALA+ L + ++++VV G G DI +
Sbjct: 344 IIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVH 387
Score = 28.3 bits (62), Expect = 6.8
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 809 IINEP-TAAALAYGLD----KKPDDRIIVVYDLGGGTFDISVIE 847
II ++ ALA+ L + ++++VV G G DI +
Sbjct: 344 IIPALESSHALAHALKMMREQPEKEQLLVVNLSGRGDKDIFTVH 387
>d1zcba1 a.66.1.1 (A:76-201) Transducin (alpha subunit), insertion
domain {Mouse (Mus musculus) [TaxId: 10090]}
Length = 126
Score = 26.8 bits (59), Expect = 7.2
Identities = 9/80 (11%), Positives = 24/80 (30%), Gaps = 6/80 (7%)
Query: 561 YDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKF 620
+D+ + + + N+I + + D+ E + N+ + + F +
Sbjct: 1 FDQRAREEFRPTIYSNVIKGMRVLVDAREKLHIPWGDNKNQL------HGDKLMAFDTRA 54
Query: 621 NIKQISETGVLFNPDIHEAI 640
+ AI
Sbjct: 55 PMAAQGMVETRVFLQYLPAI 74
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 28.3 bits (62), Expect = 7.3
Identities = 14/114 (12%), Positives = 32/114 (28%), Gaps = 4/114 (3%)
Query: 1129 AKDKKTGKEQSIIIKSSGGLSEIEIENMIKDAELNSELDKKFEELVKCKNEADSTISIVK 1188
+ KE S +I ++ + + E+ N + +
Sbjct: 637 LGFPRFNKEGKPYYGSPNDEIAEQINDVKGATSDEEDEESSHEDTENVINGPEELYGTYE 696
Query: 1189 KNLKDENTKITDEEKESIEKSISNLELLIKGDDIELIKKGNEDLLKISENIIKK 1242
L +T E + + K E ++ L+K +D+ +
Sbjct: 697 YLLGMRIWSLTKERYQKLLKQKQEKETELE----NLLKLSAKDIWNTDLKAFEV 746
>d2p4wa1 a.4.5.64 (A:1-194) Transcriptional regulatory protein PF1790
{Pyrococcus furiosus [TaxId: 2261]}
Length = 194
Score = 27.7 bits (61), Expect = 7.6
Identities = 11/57 (19%), Positives = 33/57 (57%)
Query: 1158 KDAELNSELDKKFEELVKCKNEADSTISIVKKNLKDENTKITDEEKESIEKSISNLE 1214
+ AE EL+++ E+++ K E + +++ +++ ++ +E ++ IE+ ++E
Sbjct: 126 ELAEFLHELNERIREIIEEKRELEEARILIETYIENTMRRLAEENRQIIEEIFRDIE 182
>d2fs6a1 b.60.1.2 (A:2-137) Cellular retinoic-acid-binding protein
(CRABP) {Human (Homo sapiens), CRABP-II [TaxId: 9606]}
Length = 136
Score = 27.1 bits (60), Expect = 7.8
Identities = 17/69 (24%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 1139 SIIIKSSGGLSEIEIENMIKDAELNSELDKKFEEL----VKCKN----EADSTISIVKKN 1190
++ IK G I+ ++ E+N ++ ++FEE CK+ E+++ + +K
Sbjct: 39 AVEIKQEGDTFYIKTSTTVRTTEINFKVGEEFEEQTVDGRPCKSLVKWESENKMVCEQKL 98
Query: 1191 LKDENTKIT 1199
LK E K +
Sbjct: 99 LKGEGPKTS 107
>d1cipa1 a.66.1.1 (A:61-181) Transducin (alpha subunit), insertion
domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 121
Score = 26.8 bits (59), Expect = 8.4
Identities = 14/80 (17%), Positives = 28/80 (35%), Gaps = 13/80 (16%)
Query: 561 YDEDKIRKLKEIVIENIIIELIPITDSMEMFAKNFDSNQTKESEIIFLIFKLIKKFYKKF 620
Y E++ ++ K +V N I +I I +M +F + + F
Sbjct: 1 YSEEECKQYKAVVYSNTIQSIIAIIRAMGRLKIDFGDAARAD------------DARQLF 48
Query: 621 NIKQISETGVLFNPDIHEAI 640
+ +E G ++ I
Sbjct: 49 VLAGAAEEGF-MTAELAGVI 67
>d2ja9a2 d.51.1.1 (A:152-236) Ribosomal RNA-processing protein 40,
RRP40 {Saccharomyces cerevisiae [TaxId: 4932]}
Length = 85
Score = 25.9 bits (57), Expect = 9.0
Identities = 5/41 (12%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 70 IKRLIGRKYTDEIVQTVLKMVPYKIVAADNGDAWVEVKDKK 110
++L+ +++ + +++ NG WV+ ++
Sbjct: 12 ARQLLFNN-DFPLLKVLAAHTKFEVAIGLNGKIWVKCEELS 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.133 0.358
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,435,202
Number of extensions: 224396
Number of successful extensions: 822
Number of sequences better than 10.0: 1
Number of HSP's gapped: 793
Number of HSP's successfully gapped: 80
Length of query: 1242
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1146
Effective length of database: 1,089,516
Effective search space: 1248585336
Effective search space used: 1248585336
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.8 bits)