BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5912
         (122 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q24248|ARA_DROME Homeobox protein araucan OS=Drosophila melanogaster GN=ara PE=1
           SV=2
          Length = 717

 Score = 66.2 bits (160), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 33/73 (45%), Positives = 43/73 (58%), Gaps = 10/73 (13%)

Query: 51  CCDTGRPIFTDPISGQTICSCQYD-----LLNYQRLAAGGGPGLPLSMYSAPYPEGMAAY 105
           CC+ GRPI TDP+SGQT+CSCQYD     L +Y RL     P   + +Y  PYP      
Sbjct: 132 CCENGRPIMTDPVSGQTVCSCQYDSARLALSSYSRL-----PAASVGVYGTPYPSTDQNP 186

Query: 106 FPALGADQAPFYS 118
           + ++G D + FYS
Sbjct: 187 YQSIGVDSSAFYS 199


>sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila melanogaster GN=caup PE=2
           SV=2
          Length = 693

 Score = 57.0 bits (136), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 24/35 (68%), Positives = 27/35 (77%), Gaps = 3/35 (8%)

Query: 51  CCDTGRPIFTDPISGQTICSCQYDLLNYQRLAAGG 85
           CC+ GRPI TDP+SGQT+CSCQYD     RLA GG
Sbjct: 106 CCENGRPIITDPVSGQTVCSCQYDP---ARLAIGG 137


>sp|Q8R3Q2|PP6R2_MOUSE Serine/threonine-protein phosphatase 6 regulatory subunit 2 OS=Mus
           musculus GN=Ppp6r2 PE=1 SV=1
          Length = 923

 Score = 32.0 bits (71), Expect = 1.0,   Method: Composition-based stats.
 Identities = 16/41 (39%), Positives = 23/41 (56%)

Query: 9   VAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGS 49
           +A  SSPT    P S + ++ T+ TAV   P  P S +PG+
Sbjct: 665 LAAPSSPTQKEGPRSESDSAGTTWTAVFDEPVNPLSATPGA 705


>sp|A0JPP8|CCD61_RAT Coiled-coil domain-containing protein 61 OS=Rattus norvegicus
           GN=Ccdc61 PE=2 SV=1
          Length = 512

 Score = 30.4 bits (67), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/55 (34%), Positives = 25/55 (45%)

Query: 44  STSPGSRCCDTGRPIFTDPISGQTICSCQYDLLNYQRLAAGGGPGLPLSMYSAPY 98
           S S   RC   G+P    P SG    S   +  N+QR  A  G  +P+  YS+ Y
Sbjct: 432 SVSKSRRCRGRGKPPSPIPWSGSKTKSTTRERNNHQRHLASSGAWVPIKEYSSDY 486


>sp|P06803|PIM1_MOUSE Serine/threonine-protein kinase pim-1 OS=Mus musculus GN=Pim1
          PE=1 SV=2
          Length = 397

 Score = 29.6 bits (65), Expect = 5.6,   Method: Composition-based stats.
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 11 PSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGS 49
          P   P SSS  PS+ RAS + +   T + +  R  SP S
Sbjct: 26 PRQRPQSSSDSPSALRASRSQSRNATRSLSPGRRLSPSS 64


>sp|P80664|LSHB_STRCA Lutropin subunit beta OS=Struthio camelus GN=LHB PE=1 SV=1
          Length = 128

 Score = 28.9 bits (63), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 52 CDTGRPIFTDPISGQTICSCQYDLLNYQRLA 82
          C T  P++  P+ G    +C Y  L Y+RLA
Sbjct: 47 CRTREPVYRSPLGGPAQQACGYGALRYERLA 77


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.310    0.125    0.378 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,710,585
Number of Sequences: 539616
Number of extensions: 2172169
Number of successful extensions: 27826
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 470
Number of HSP's that attempted gapping in prelim test: 18059
Number of HSP's gapped (non-prelim): 8432
length of query: 122
length of database: 191,569,459
effective HSP length: 89
effective length of query: 33
effective length of database: 143,543,635
effective search space: 4736939955
effective search space used: 4736939955
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 55 (25.8 bits)