Query psy5912
Match_columns 122
No_of_seqs 26 out of 28
Neff 2.0
Searched_HMMs 29240
Date Fri Aug 16 21:38:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5912.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5912hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1dl6_A Transcription factor II 49.8 7.9 0.00027 24.0 1.7 21 50-70 13-34 (58)
2 1pft_A TFIIB, PFTFIIBN; N-term 42.6 13 0.00043 21.7 1.7 23 51-73 8-32 (50)
3 3k7a_M Transcription initiatio 31.2 24 0.00084 27.5 2.2 26 49-74 22-51 (345)
4 2kr4_A Ubiquitin conjugation f 24.4 19 0.00064 22.7 0.3 21 50-70 15-38 (85)
5 4bbr_M Transcription initiatio 18.0 40 0.0014 26.7 1.1 26 49-74 22-51 (345)
6 3k1f_M Transcription initiatio 16.6 44 0.0015 26.3 1.0 27 48-74 21-51 (197)
7 2c2l_A CHIP, carboxy terminus 13.9 49 0.0017 23.3 0.5 24 47-70 206-232 (281)
8 2jxw_A WW domain-binding prote 13.1 59 0.002 20.2 0.7 17 52-68 53-69 (75)
9 2l5f_A PRE-mRNA-processing fac 12.9 82 0.0028 20.4 1.4 17 52-68 62-78 (92)
10 1e0n_A Hypothetical protein; Y 12.3 93 0.0032 16.6 1.3 16 53-68 8-23 (27)
No 1
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=49.79 E-value=7.9 Score=23.97 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=17.6
Q ss_pred CCCCCCC-ceecCCCCCceeec
Q psy5912 50 RCCDTGR-PIFTDPISGQTICS 70 (122)
Q Consensus 50 ~CCe~GR-Pi~TDPvtGQTVCS 70 (122)
.|=+-|+ +|+.|...|..||.
T Consensus 13 ~Cp~C~~~~lv~D~~~ge~vC~ 34 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRAGDMICP 34 (58)
T ss_dssp SBTTBSSSCCEECSSSCCEECT
T ss_pred cCcCCCCCceeEeCCCCeEEeC
Confidence 5766666 79999999999995
No 2
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=42.59 E-value=13 Score=21.65 Aligned_cols=23 Identities=30% Similarity=0.842 Sum_probs=17.6
Q ss_pred CCCCCC-ceecCCCCCceee-cccc
Q psy5912 51 CCDTGR-PIFTDPISGQTIC-SCQY 73 (122)
Q Consensus 51 CCe~GR-Pi~TDPvtGQTVC-SCQY 73 (122)
|=+-|. +|+.|+.+|..|| .|..
T Consensus 8 CP~C~~~~l~~d~~~gelvC~~CG~ 32 (50)
T 1pft_A 8 CPACESAELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CTTTSCCCEEEETTTTEEEESSSCC
T ss_pred CcCCCCcceEEcCCCCeEECcccCC
Confidence 434455 9999999999999 4655
No 3
>3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae}
Probab=31.22 E-value=24 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.401 Sum_probs=19.9
Q ss_pred CCCCCCCCc---eecCCCCCceeec-cccc
Q psy5912 49 SRCCDTGRP---IFTDPISGQTICS-CQYD 74 (122)
Q Consensus 49 ~~CCe~GRP---i~TDPvtGQTVCS-CQYD 74 (122)
..|-+=|.. |+.|..+|+.||. |.+-
T Consensus 22 ~~Cp~Cg~~~~~iv~D~~~G~~vC~~CG~V 51 (345)
T 3k7a_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCCSTTCCSCCCCCCCSSSCSCCCSSSCCC
T ss_pred CcCcCCCCCCCceEEECCCCCEecCCCCeE
Confidence 367666663 9999999999995 7663
No 4
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=24.39 E-value=19 Score=22.67 Aligned_cols=21 Identities=24% Similarity=0.254 Sum_probs=13.3
Q ss_pred CCCCCCCceecCCC---CCceeec
Q psy5912 50 RCCDTGRPIFTDPI---SGQTICS 70 (122)
Q Consensus 50 ~CCe~GRPi~TDPv---tGQTVCS 70 (122)
-+|-=-.-||.||| .|++.|.
T Consensus 15 ~~CpI~~~~m~dPV~~~cGhtf~r 38 (85)
T 2kr4_A 15 FRDPLMDTLMTDPVRLPSGTVMDR 38 (85)
T ss_dssp TBCTTTCSBCSSEEECTTSCEEEH
T ss_pred eECcccCchhcCCeECCCCCEECH
Confidence 44444455788988 5777663
No 5
>4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M
Probab=18.00 E-value=40 Score=26.66 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=20.4
Q ss_pred CCCCCCCC---ceecCCCCCceeec-cccc
Q psy5912 49 SRCCDTGR---PIFTDPISGQTICS-CQYD 74 (122)
Q Consensus 49 ~~CCe~GR---Pi~TDPvtGQTVCS-CQYD 74 (122)
..|-|=|+ -|+.|..+|++||. |.+-
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~~vC~~CGlV 51 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTEEEETTTCBE
T ss_pred CcCCCCCCCCCceeEECCCCcEEeCCCCCC
Confidence 36877775 48999999999995 7654
No 6
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae}
Probab=16.57 E-value=44 Score=26.35 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=20.6
Q ss_pred CCCCCCCCC---ceecCCCCCceeec-cccc
Q psy5912 48 GSRCCDTGR---PIFTDPISGQTICS-CQYD 74 (122)
Q Consensus 48 ~~~CCe~GR---Pi~TDPvtGQTVCS-CQYD 74 (122)
-..|=|=|+ -|++|..+|.+||. |.+-
T Consensus 21 ~~~CPECGs~~t~IV~D~erGE~VCsdCGLV 51 (197)
T 3k1f_M 21 VLTCPECKVYPPKIVERFSEGDVVCALCGLV 51 (197)
T ss_dssp CCCCTTTCCSSCCEEEEGGGTEEEETTTCBB
T ss_pred CeECcCCCCcCCeEEEeCCCCEEEEcCCCCC
Confidence 336866676 39999999999995 6653
No 7
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=13.90 E-value=49 Score=23.33 Aligned_cols=24 Identities=21% Similarity=0.340 Sum_probs=16.1
Q ss_pred CCCCCCCCCCceecCCCC---Cceeec
Q psy5912 47 PGSRCCDTGRPIFTDPIS---GQTICS 70 (122)
Q Consensus 47 p~~~CCe~GRPi~TDPvt---GQTVCS 70 (122)
+.--+|---.-+|.|||+ |++.|.
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~ 232 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDR 232 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEET
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECH
Confidence 344566555667889984 777774
No 8
>2jxw_A WW domain-binding protein 4; WW domain containing protein, FBP21, WBP4, metal- binding, mRNA processing, mRNA splicing, nucleus, polymorphism; NMR {Homo sapiens}
Probab=13.13 E-value=59 Score=20.23 Aligned_cols=17 Identities=12% Similarity=0.341 Sum_probs=15.0
Q ss_pred CCCCCceecCCCCCcee
Q psy5912 52 CDTGRPIFTDPISGQTI 68 (122)
Q Consensus 52 Ce~GRPi~TDPvtGQTV 68 (122)
++.||..+-+.+|++++
T Consensus 53 ~~~Gr~YyyN~~T~~s~ 69 (75)
T 2jxw_A 53 SEDGFTYYYNTETGESR 69 (75)
T ss_dssp ETTTEEEEEETTTTEEE
T ss_pred CCCCCEEEEECcCCCEe
Confidence 46899999999999985
No 9
>2l5f_A PRE-mRNA-processing factor 40 homolog A; 2WW, HYPA, FBP11, protein binding; NMR {Homo sapiens}
Probab=12.95 E-value=82 Score=20.41 Aligned_cols=17 Identities=12% Similarity=0.395 Sum_probs=15.2
Q ss_pred CCCCCceecCCCCCcee
Q psy5912 52 CDTGRPIFTDPISGQTI 68 (122)
Q Consensus 52 Ce~GRPi~TDPvtGQTV 68 (122)
+++||..+.|..|++++
T Consensus 62 ~~~Gr~Yy~N~~T~~s~ 78 (92)
T 2l5f_A 62 SDSGKTYYYNSQTKESR 78 (92)
T ss_dssp CTTCCEEEEETTTTEEE
T ss_pred CCCCCEEEEECCCCCee
Confidence 46899999999999986
No 10
>1e0n_A Hypothetical protein; YJQ8WW domain, WW domain, saccharomyces cerevisae, YJQ8 protein; NMR {Saccharomyces cerevisiae} SCOP: b.72.1.1
Probab=12.29 E-value=93 Score=16.61 Aligned_cols=16 Identities=19% Similarity=0.623 Sum_probs=13.3
Q ss_pred CCCCceecCCCCCcee
Q psy5912 53 DTGRPIFTDPISGQTI 68 (122)
Q Consensus 53 e~GRPi~TDPvtGQTV 68 (122)
++||+-+-+..|+++.
T Consensus 8 ~~g~~YYyN~~T~~s~ 23 (27)
T 1e0n_A 8 ENGRPLYYNAEQKTKL 23 (27)
T ss_dssp SSSSEEEEETTTTEEE
T ss_pred CCCCeEEEECCCCCEe
Confidence 4789999999998874
Done!