Query psy5912
Match_columns 122
No_of_seqs 26 out of 28
Neff 2.0
Searched_HMMs 13730
Date Fri Aug 16 21:39:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5912.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5912hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e0na_ b.72.1.1 (A:) Hypothet 39.0 4.5 0.00033 21.9 0.7 9 53-61 8-16 (27)
2 d2bv3a4 d.58.11.1 (A:404-478) 37.1 7.1 0.00052 23.5 1.6 18 58-75 37-54 (75)
3 d1pfta_ g.41.3.1 (A:) Transcri 33.2 9.6 0.0007 21.8 1.6 18 56-73 14-32 (50)
4 d1zunb2 b.44.1.1 (B:330-434) S 32.2 8.4 0.00061 24.1 1.4 21 49-69 79-99 (105)
5 d1pina1 b.72.1.1 (A:6-39) Mito 21.2 18 0.0013 19.0 1.2 15 54-68 14-28 (34)
6 d1zaka2 g.41.2.1 (A:128-158) M 19.8 15 0.0011 20.0 0.7 8 60-67 4-11 (31)
7 d1pyia1 g.38.1.1 (A:30-71) PPR 18.4 29 0.0021 18.6 1.7 9 58-66 33-41 (42)
8 d1kloa1 g.3.11.2 (A:11-65) Lam 18.3 35 0.0025 19.2 2.1 22 53-74 4-26 (55)
9 d2dy1a4 d.58.11.1 (A:378-454) 17.9 26 0.0019 20.7 1.5 18 58-75 37-54 (77)
10 d1dl6a_ g.41.3.1 (A:) Transcri 15.3 27 0.002 20.4 1.1 19 56-74 20-39 (58)
No 1
>d1e0na_ b.72.1.1 (A:) Hypothetical protein Yjq8 (Set2p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=39.02 E-value=4.5 Score=21.92 Aligned_cols=9 Identities=33% Similarity=1.121 Sum_probs=7.1
Q ss_pred CCCCceecC
Q psy5912 53 DTGRPIFTD 61 (122)
Q Consensus 53 e~GRPi~TD 61 (122)
|||||++-+
T Consensus 8 engrpmyyn 16 (27)
T d1e0na_ 8 ENGRPLYYN 16 (27)
T ss_dssp SSSSEEEEE
T ss_pred cCCceeeee
Confidence 899998743
No 2
>d2bv3a4 d.58.11.1 (A:404-478) Elongation factor G (EF-G) {Thermus thermophilus [TaxId: 274]}
Probab=37.11 E-value=7.1 Score=23.54 Aligned_cols=18 Identities=39% Similarity=0.440 Sum_probs=15.5
Q ss_pred eecCCCCCceeecccccc
Q psy5912 58 IFTDPISGQTICSCQYDL 75 (122)
Q Consensus 58 i~TDPvtGQTVCSCQYD~ 75 (122)
+..|+.|||++++++=++
T Consensus 37 ~~~d~et~e~il~g~Gel 54 (75)
T d2bv3a4 37 VSTHPETGSTIISGMGEL 54 (75)
T ss_dssp EEECSSSSCEEEEBSSHH
T ss_pred EEEcCcCCcEEEeeCCHh
Confidence 567999999999998774
No 3
>d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]}
Probab=33.20 E-value=9.6 Score=21.81 Aligned_cols=18 Identities=33% Similarity=0.960 Sum_probs=14.9
Q ss_pred CceecCCCCCceeec-ccc
Q psy5912 56 RPIFTDPISGQTICS-CQY 73 (122)
Q Consensus 56 RPi~TDPvtGQTVCS-CQY 73 (122)
.-|++|-.+|..||. |.+
T Consensus 14 ~~iv~D~~~Ge~vC~~CG~ 32 (50)
T d1pfta_ 14 AELIYDPERGEIVCAKCGY 32 (50)
T ss_dssp CCEEEETTTTEEEESSSCC
T ss_pred CcEEEECCCCeEecccCCc
Confidence 349999999999995 654
No 4
>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]}
Probab=32.16 E-value=8.4 Score=24.13 Aligned_cols=21 Identities=29% Similarity=0.316 Sum_probs=17.9
Q ss_pred CCCCCCCCceecCCCCCceee
Q psy5912 49 SRCCDTGRPIFTDPISGQTIC 69 (122)
Q Consensus 49 ~~CCe~GRPi~TDPvtGQTVC 69 (122)
..|=.+||=|+.|+.+|+||-
T Consensus 79 ~~n~~~G~fiLiD~~~~~Tva 99 (105)
T d1zunb2 79 SSNRTTGAFIVIDRLTNGTVA 99 (105)
T ss_dssp TTCTTTTEEEEECTTTCCEEE
T ss_pred ccCcCceeEEEEECCCCCEEE
Confidence 355678999999999999984
No 5
>d1pina1 b.72.1.1 (A:6-39) Mitotic rotamase PIN1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.22 E-value=18 Score=19.00 Aligned_cols=15 Identities=20% Similarity=0.437 Sum_probs=13.1
Q ss_pred CCCceecCCCCCcee
Q psy5912 54 TGRPIFTDPISGQTI 68 (122)
Q Consensus 54 ~GRPi~TDPvtGQTV 68 (122)
+||+.+.|.+||+|.
T Consensus 14 ~G~~YY~n~~T~~T~ 28 (34)
T d1pina1 14 SGRVYYFNHITNASQ 28 (34)
T ss_dssp SCCEEEEETTTCCEE
T ss_pred CCCEEEEECCCCCEE
Confidence 699999999999873
No 6
>d1zaka2 g.41.2.1 (A:128-158) Microbial and mitochondrial ADK, insert "zinc finger" domain {Maize (Zea mays) [TaxId: 4577]}
Probab=19.81 E-value=15 Score=20.03 Aligned_cols=8 Identities=38% Similarity=0.962 Sum_probs=6.4
Q ss_pred cCCCCCce
Q psy5912 60 TDPISGQT 67 (122)
Q Consensus 60 TDPvtGQT 67 (122)
+||+||.-
T Consensus 4 ~DP~TG~i 11 (31)
T d1zaka2 4 LDPVTGKI 11 (31)
T ss_dssp ECTTTCCE
T ss_pred CCCCCCcE
Confidence 69999963
No 7
>d1pyia1 g.38.1.1 (A:30-71) PPR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=18.42 E-value=29 Score=18.61 Aligned_cols=9 Identities=33% Similarity=0.744 Sum_probs=6.6
Q ss_pred eecCCCCCc
Q psy5912 58 IFTDPISGQ 66 (122)
Q Consensus 58 i~TDPvtGQ 66 (122)
++.||++|+
T Consensus 33 ~y~~p~~~R 41 (42)
T d1pyia1 33 VSLDPATGK 41 (42)
T ss_dssp EEECTTTCC
T ss_pred CCcCCCCCC
Confidence 467888775
No 8
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=18.27 E-value=35 Score=19.19 Aligned_cols=22 Identities=18% Similarity=0.475 Sum_probs=15.8
Q ss_pred CCCCceecCCCCCceeec-cccc
Q psy5912 53 DTGRPIFTDPISGQTICS-CQYD 74 (122)
Q Consensus 53 e~GRPi~TDPvtGQTVCS-CQYD 74 (122)
.++..-..++.+|+.||. |+-.
T Consensus 4 ~~~~~c~~~~~~~~~vC~~C~~~ 26 (55)
T d1kloa1 4 PGGSSCAIVPKTKEVVCTHCPTG 26 (55)
T ss_dssp CTTCCEEECSSSCCEEECSCCTT
T ss_pred cCCCccceeCCCCCEEcCCCCCC
Confidence 444556677888999994 8765
No 9
>d2dy1a4 d.58.11.1 (A:378-454) Elongation factor G (EF-G) {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Probab=17.91 E-value=26 Score=20.70 Aligned_cols=18 Identities=11% Similarity=0.091 Sum_probs=15.2
Q ss_pred eecCCCCCceeecccccc
Q psy5912 58 IFTDPISGQTICSCQYDL 75 (122)
Q Consensus 58 i~TDPvtGQTVCSCQYD~ 75 (122)
+..|..|||++.+++=++
T Consensus 37 v~~d~et~e~vl~g~Gel 54 (77)
T d2dy1a4 37 LERQEETGELLLWGHGEL 54 (77)
T ss_dssp EEECTTTCCEEEEESSHH
T ss_pred EEEcCCchhheEeccccc
Confidence 457999999999998774
No 10
>d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=15.27 E-value=27 Score=20.40 Aligned_cols=19 Identities=26% Similarity=0.532 Sum_probs=15.4
Q ss_pred CceecCCCCCceeec-cccc
Q psy5912 56 RPIFTDPISGQTICS-CQYD 74 (122)
Q Consensus 56 RPi~TDPvtGQTVCS-CQYD 74 (122)
+-|++|-..|..||. |.+-
T Consensus 20 ~~ii~D~~~Ge~vC~~CG~V 39 (58)
T d1dl6a_ 20 AILVEDYRAGDMICPECGLV 39 (58)
T ss_dssp SCCEECSSSCCEECTTTCCE
T ss_pred CCEEEECCCCcEecccCCCE
Confidence 458999999999995 6653
Done!