RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5912
(122 letters)
>gnl|CDD|237874 PRK14971, PRK14971, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 614
Score = 32.4 bits (74), Expect = 0.036
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
P + A S SP+ SS + + + A T + +
Sbjct: 392 PSAAAAASPSPSQSSAAAQPSAPQSATQPAGTPPTVSVDPPAA 434
Score = 25.5 bits (56), Expect = 9.0
Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGS 49
+ + S++ + +PP S + V AP++ P
Sbjct: 409 AQPSAPQSATQPAGTPPTVSVDP--PAAVPVNPPSTAPQAVRPAQ 451
>gnl|CDD|237019 PRK11907, PRK11907, bifunctional 2',3'-cyclic nucleotide
2'-phosphodiesterase/3'-nucleotidase precursor protein;
Reviewed.
Length = 814
Score = 32.5 bits (74), Expect = 0.044
Identities = 17/68 (25%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 5 PESTVAPSSSPTSSSPPP--SSTRASNTSTTAVTS--TPAAPRSTSPGSRCCDTGRPIFT 60
P + A + + +P ++ A ++S TA TS T A +T+ +R +
Sbjct: 47 PVESDATEEADNTETPVAATTAAEAPSSSETAETSDPTSEATDTTTSEARTVTPAATETS 106
Query: 61 DPISGQTI 68
P+ GQT+
Sbjct: 107 KPVEGQTV 114
Score = 27.1 bits (60), Expect = 2.7
Identities = 9/45 (20%), Positives = 17/45 (37%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGS 49
T P++S + P + A+ + T A + +P S
Sbjct: 30 EIVTTTPATSTEAEQTTPVESDATEEADNTETPVAATTAAEAPSS 74
Score = 25.6 bits (56), Expect = 8.0
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 7 STVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
+ + ++ P +ST A T+ +T A + +P
Sbjct: 22 NPKLAQAEEIVTTTPATSTEAEQTTPVESDATEEADNTETP 62
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed.
Length = 1228
Score = 31.8 bits (73), Expect = 0.066
Identities = 11/43 (25%), Positives = 22/43 (51%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
P ST AP+++ +++ S+ A+ + PA P + +P
Sbjct: 38 PGSTAAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAP 80
Score = 26.0 bits (58), Expect = 6.4
Identities = 3/41 (7%), Positives = 11/41 (26%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRST 45
P + +++ + + + A + T
Sbjct: 78 AAPAAPPKPAAAAAAAAAPAAPPAAAAAAAPAAAAVEDEVT 118
>gnl|CDD|226406 COG3889, COG3889, Predicted solute binding protein [General
function prediction only].
Length = 872
Score = 31.0 bits (70), Expect = 0.12
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Query: 4 IPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDT 54
+ TV + T+SSP P+ T S T T+ T+T +P T+ G C
Sbjct: 805 VITKTVTQTQ-TTTSSPSPTQT-TSPTQTSTSTTTTTSPSQTTTGGGICGP 853
Score = 28.3 bits (63), Expect = 1.0
Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 3 KIPESTVAPSSSPT-SSSPPPSSTRASNTSTTAVTST 38
K T +SSP+ + + P+ T S T+TT+ + T
Sbjct: 808 KTVTQTQTTTSSPSPTQTTSPTQTSTSTTTTTSPSQT 844
Score = 26.4 bits (58), Expect = 4.9
Identities = 7/40 (17%), Positives = 17/40 (42%)
Query: 3 KIPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAP 42
+ S+ +P+ + + + S+T ++ S T P
Sbjct: 814 QTTTSSPSPTQTTSPTQTSTSTTTTTSPSQTTTGGGICGP 853
>gnl|CDD|233045 TIGR00601, rad23, UV excision repair protein Rad23. All proteins
in this family for which functions are known are
components of a multiprotein complex used for targeting
nucleotide excision repair to specific parts of the
genome. In humans, Rad23 complexes with the XPC protein.
This family is based on the phylogenomic analysis of JA
Eisen (1999, Ph.D. Thesis, Stanford University) [DNA
metabolism, DNA replication, recombination, and repair].
Length = 378
Score = 31.0 bits (70), Expect = 0.13
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 3/53 (5%)
Query: 5 PESTVAPSSSPTSS-SPPPSSTRASNTST--TAVTSTPAAPRSTSPGSRCCDT 54
P T +P +SP S S P+S + + +A + P +P ++ P S
Sbjct: 95 PTPTPSPPASPASGMSAAPASAVEEKSPSEESATATAPESPSTSVPSSGSDAA 147
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex
dihydrolipoamide acetyltransferase, long form. This
model represents one of several closely related clades
of the dihydrolipoamide acetyltransferase subunit of the
pyruvate dehydrogenase complex. It includes sequences
from mitochondria and from alpha and beta branches of
the proteobacteria, as well as from some other bacteria.
Sequences from Gram-positive bacteria are not included.
The non-enzymatic homolog protein X, which serves as an
E3 component binding protein, falls within the clade
phylogenetically but is rejected by its low score
[Energy metabolism, Pyruvate dehydrogenase].
Length = 436
Score = 30.5 bits (69), Expect = 0.19
Identities = 32/130 (24%), Positives = 48/130 (36%), Gaps = 23/130 (17%)
Query: 5 PESTVAPSSSPTSSSPP-PSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDTGRPIFTDPI 63
ES+ +P+ P+ +P P S + + + P++P S G IF P+
Sbjct: 90 LESSASPAPKPSEIAPTAPPSAPKPSPAPQKQSPEPSSPAPLSDKES----GDRIFASPL 145
Query: 64 SGQTICSCQYDLLNYQRLAAGGGPG-----------LPLSMYSAPYPEGMAAYFPALGAD 112
+ + DL AG GP +P S A + AA PA
Sbjct: 146 AKKLAKEKGIDLSA----VAGSGPNGRIVKKDIESFVPQS--PASANQQAAATTPATYPA 199
Query: 113 QAPFYSSASY 122
AP S+ SY
Sbjct: 200 AAPV-STGSY 208
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 29.3 bits (65), Expect = 0.49
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 16 TSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDTGRPIFTDPISG 65
++SSP + S T+TT +S P+AP SR T TD ISG
Sbjct: 273 STSSPSTTRPSGSTTTTTPASSGPSAPGGPGSSSRNAVTRS---TDSISG 319
>gnl|CDD|215592 PLN03126, PLN03126, Elongation factor Tu; Provisional.
Length = 478
Score = 28.8 bits (64), Expect = 0.68
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 7 STVAPSSSPTSSS-PPPSSTRASNTSTTAVTSTPAAPRSTSPGS 49
+ A ++S +SS P SS+ + ++ST + ST +S + S
Sbjct: 2 AISASAASSSSSLLLPSSSSSSPSSSTFSFKSTSGKLKSLTLSS 45
>gnl|CDD|220603 pfam10152, DUF2360, Predicted coiled-coil domain-containing protein
(DUF2360). This is the conserved 140 amino acid region
of a family of proteins conserved from nematodes to
humans. One C. elegans member is annotated as a
Daf-16-dependent longevity protein 1 but this could not
be confirmed. The function is unknown.
Length = 147
Score = 28.1 bits (63), Expect = 0.74
Identities = 11/61 (18%), Positives = 23/61 (37%)
Query: 2 LKIPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDTGRPIFTD 61
+ + + P+S+ T+ PPP + ++ PA P + + + D
Sbjct: 53 VTVQTTPPPPASAITNGGPPPPPPARAEAASPPPPEAPAEPPAEPEPEAPAENTVTVAKD 112
Query: 62 P 62
P
Sbjct: 113 P 113
>gnl|CDD|236776 PRK10856, PRK10856, cytoskeletal protein RodZ; Provisional.
Length = 331
Score = 28.5 bits (64), Expect = 0.81
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 4 IPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
+ AP+ P ++ S +T+ T + PA P +P
Sbjct: 193 AVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPATPDGAAP 236
Score = 26.1 bits (58), Expect = 5.5
Identities = 7/43 (16%), Positives = 17/43 (39%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
T A +++P + P + + + T+ AP + +
Sbjct: 188 NSQTPAVATAPAPAVDPQQNAVVAPSQANVDTAATPAPAAPAT 230
>gnl|CDD|147982 pfam06112, Herpes_capsid, Gammaherpesvirus capsid protein. This
family consists of several Gammaherpesvirus capsid
proteins. The exact function of this family is unknown.
Length = 148
Score = 28.3 bits (63), Expect = 0.83
Identities = 15/64 (23%), Positives = 29/64 (45%), Gaps = 9/64 (14%)
Query: 7 STVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDTGRPIFTDPISGQ 66
+ +SS ++S P + + S +S +A++S P + S+S S + +G
Sbjct: 89 GSALSASSSSASGVPGGANQLSGSSGSALSSGPGSLSSSSSLS---------GSGAGAGD 139
Query: 67 TICS 70
T S
Sbjct: 140 TAPS 143
>gnl|CDD|178145 PLN02530, PLN02530, histidine-tRNA ligase.
Length = 487
Score = 28.6 bits (64), Expect = 0.84
Identities = 14/59 (23%), Positives = 20/59 (33%), Gaps = 3/59 (5%)
Query: 10 APSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRS---TSPGSRCCDTGRPIFTDPISG 65
PS +S S + A ++ RS T+P S D I +P G
Sbjct: 17 RPSLPLSSRCSFLLSASSPRGGRCAASAAAGGGRSGGTTAPPSVQEDGKPKIDVNPPKG 75
>gnl|CDD|165021 PHA02638, PHA02638, CC chemokine receptor-like protein;
Provisional.
Length = 417
Score = 28.4 bits (63), Expect = 0.89
Identities = 11/32 (34%), Positives = 22/32 (68%)
Query: 7 STVAPSSSPTSSSPPPSSTRASNTSTTAVTST 38
+ + P+ PTS SP P+S +S++S+++ + T
Sbjct: 41 TEIIPTEIPTSESPSPNSNSSSSSSSSSSSIT 72
>gnl|CDD|237864 PRK14950, PRK14950, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 585
Score = 28.2 bits (63), Expect = 0.96
Identities = 11/42 (26%), Positives = 15/42 (35%)
Query: 3 KIPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRS 44
+P VAP T S P + A + PA P+
Sbjct: 411 PVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPPAPPKE 452
Score = 27.5 bits (61), Expect = 1.9
Identities = 7/43 (16%), Positives = 13/43 (30%)
Query: 3 KIPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRST 45
K + P P + P + + +AP+ T
Sbjct: 390 KAAAAANIPPKEPVRETATPPPVPPRPVAPPVPHTPESAPKLT 432
Score = 26.3 bits (58), Expect = 4.6
Identities = 9/40 (22%), Positives = 14/40 (35%)
Query: 8 TVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
T P + P P + ++ T A P+ T P
Sbjct: 408 TPPPVPPRPVAPPVPHTPESAPKLTRAAIPVDEKPKYTPP 447
>gnl|CDD|221093 pfam11359, gpUL132, Glycoprotein UL132. Glycoprotein UL132 is a
low-abundance structural component of Human
cytomegalovirus (HCMV). The function of this protein is
not fully understood.
Length = 235
Score = 28.1 bits (62), Expect = 1.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 16 TSSSPPPSSTRASNTSTTAVTSTP 39
TSS+ P++T A+ T T A ++T
Sbjct: 2 TSSTTTPANTTATVTVTVATSNTT 25
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 28.4 bits (63), Expect = 1.1
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 3/50 (6%)
Query: 4 IPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTS---TPAAPRSTSPGSR 50
+P+ T PS S + +S A+ +S++ + S P + R S G R
Sbjct: 138 LPDGTTFPSRSQGTRPAGGTSAVAATSSSSHLVSQQTPPPSLRGVSSGYR 187
>gnl|CDD|219419 pfam07462, MSP1_C, Merozoite surface protein 1 (MSP1) C-terminus.
This family represents the C-terminal region of
merozoite surface protein 1 (MSP1) which are found in a
number of Plasmodium species. MSP-1 is a 200-kDa protein
expressed on the surface of the P. vivax merozoite.
MSP-1 of Plasmodium species is synthesised as a
high-molecular-weight precursor and then processed into
several fragments. At the time of red cell invasion by
the merozoite, only the 19-kDa C-terminal fragment
(MSP-119), which contains two epidermal growth
factor-like domains, remains on the surface. Antibodies
against MSP-119 inhibit merozoite entry into red cells,
and immunisation with MSP-119 protects monkeys from
challenging infections. Hence, MSP-119 is considered a
promising vaccine candidate.
Length = 574
Score = 28.0 bits (62), Expect = 1.2
Identities = 11/44 (25%), Positives = 18/44 (40%)
Query: 4 IPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
+P+ T + T +PP + S S S+ +A ST
Sbjct: 258 LPKGTTQEAKVTTVVTPPQADAAPSPLSVRPAGSSGSASGSTQI 301
>gnl|CDD|177773 PLN00178, PLN00178, sulfite reductase.
Length = 623
Score = 28.2 bits (63), Expect = 1.2
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Query: 9 VAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSR 50
S++ T+ S PS +R+ AV +TP +T P R
Sbjct: 13 ARQSAATTAFSTGPSRSRSGRLVIRAV-ATPVKKPTTEPPKR 53
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase
component of pyruvate dehydrogenase complex.
Length = 539
Score = 27.9 bits (62), Expect = 1.4
Identities = 12/62 (19%), Positives = 18/62 (29%), Gaps = 7/62 (11%)
Query: 3 KIPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDTGRPIFTDP 62
K S + S PPP +++ S G R IF P
Sbjct: 201 KPSSSAAPAAPKAKPSPPPPKEEEVEKPASSPEPKASKPSAPPSSGDR-------IFASP 253
Query: 63 IS 64
++
Sbjct: 254 LA 255
>gnl|CDD|215448 PLN02834, PLN02834, 3-dehydroquinate synthase.
Length = 433
Score = 27.8 bits (62), Expect = 1.5
Identities = 5/40 (12%), Positives = 15/40 (37%)
Query: 10 APSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGS 49
+PS + + S++ + + P + + S +
Sbjct: 20 SPSDAFFDQNSSIESSKEGDLTEVIHEKCPVSGANKSEVT 59
>gnl|CDD|183854 PRK13042, PRK13042, superantigen-like protein; Reviewed.
Length = 291
Score = 27.7 bits (61), Expect = 1.8
Identities = 16/53 (30%), Positives = 26/53 (49%), Gaps = 4/53 (7%)
Query: 2 LKIPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDT 54
++ P+ST PS+ + P++T +T A TP A T+P S +T
Sbjct: 38 VEAPQST-PPSTKVEAPQSKPNATTPPSTKVEAPQQTPNA---TTPSSTKVET 86
Score = 26.5 bits (58), Expect = 3.4
Identities = 8/41 (19%), Positives = 17/41 (41%)
Query: 7 STVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
+T S+ + P ST+ + +TP + + +P
Sbjct: 30 ATTPSSTKVEAPQSTPPSTKVEAPQSKPNATTPPSTKVEAP 70
Score = 25.7 bits (56), Expect = 6.8
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGS 49
P ST + ++ P ST+ T +TP++ + +P S
Sbjct: 45 PPSTKVEAPQSKPNATTPPSTKVEAPQQTPNATTPSSTKVETPQS 89
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 27.7 bits (61), Expect = 1.9
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTS 46
P ++ P S+P +S+PP S+ SNT + + A P S
Sbjct: 437 PPNSNTPYSNPPNSNPPYSNLPYSNTPYSNAPLSNAPPSSAK 478
>gnl|CDD|205978 pfam13805, Pil1, Eisosome component PIL1. In the budding yeast,
S. cerevisiae, Pil1 and another cytoplasmic protein,
Lsp1, together form large immobile assemblies at the
plasma membrane that mark sites for endocytosis, called
eisosomes. Endocytosis functions to recycle plasma
membrane components, to regulate cell-surface
expression of signalling receptors and to internalise
nutrients in all eukaryotic cells.
Length = 271
Score = 27.1 bits (60), Expect = 2.2
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 7 STVAPSSSPTSSSPPPSSTRASN 29
++ AP++S + PPP S+ S
Sbjct: 9 NSRAPTASQLQNPPPPPSSTKSG 31
>gnl|CDD|171499 PRK12438, PRK12438, hypothetical protein; Provisional.
Length = 991
Score = 26.7 bits (59), Expect = 3.4
Identities = 9/41 (21%), Positives = 13/41 (31%)
Query: 4 IPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRS 44
P V P + + PP + + T A RS
Sbjct: 922 APPQAVPPPRTTQPPAAPPRGPDVPPAAVAELRETLADLRS 962
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 26.4 bits (58), Expect = 4.2
Identities = 14/48 (29%), Positives = 19/48 (39%), Gaps = 3/48 (6%)
Query: 6 ESTVAPSSSPTSSSPPP---SSTRASNTSTTAVTSTPAAPRSTSPGSR 50
E P+ +S P SSTR S VTS+P P ++
Sbjct: 649 EKDGLPAPMDPVTSCSPVADSSTRVDTPSHELVTSSPQTPGDPPKKNK 696
>gnl|CDD|215064 PLN00122, PLN00122, serine/threonine protein phosphatase 2A;
Provisional.
Length = 170
Score = 26.2 bits (58), Expect = 4.4
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPG 48
S + SS+P +S P SS+ +++++ S+ P S G
Sbjct: 1 SSSASSGSSAPAVNSSPSSSSSGKSSNSSKSASSAVNPASVVAG 44
>gnl|CDD|185628 PTZ00449, PTZ00449, 104 kDa microneme/rhoptry antigen; Provisional.
Length = 943
Score = 26.6 bits (58), Expect = 4.9
Identities = 16/50 (32%), Positives = 22/50 (44%), Gaps = 4/50 (8%)
Query: 1 MLKIPESTVAPSSSPTSSSPPPSSTRASN---TSTTAVTSTPAAPRSTSP 47
+L IP+S P S P S PP R S+ + +P P+S P
Sbjct: 617 LLDIPKSPKRPES-PKSPKRPPPPQRPSSPERPEGPKIIKSPKPPKSPKP 665
>gnl|CDD|147051 pfam04698, MOBP_C-Myrip, Myelin-associated oligodendrocytic basic
protein (MOBP). MOBP is abundantly expressed in central
nervous system myelin, and shares several
characteristics with myelin basic protein (MBP), in
terms of regional distribution and function. This family
is the middle and C-terminal regions of MOBP which has
been shown to be essential for normal arrangement of the
radial component in central nervous system myelin. Most
member-proteins carry a FVHE-PHD type zinc-finger at
their N-terminus.
Length = 710
Score = 26.3 bits (57), Expect = 5.1
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 7 STVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDT 54
S + P S +P P T+A ++ + ++P++ S +P + C D+
Sbjct: 259 SKLCPPSQALLKNPQPQPTQAQSSDQGPIAASPSSALSPNPEAMCSDS 306
>gnl|CDD|215138 PLN02248, PLN02248, cellulose synthase-like protein.
Length = 1135
Score = 26.1 bits (58), Expect = 5.2
Identities = 9/35 (25%), Positives = 18/35 (51%)
Query: 16 TSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSR 50
+SS P S +S++S ++ ++P+S R
Sbjct: 4 SSSKPSRKSLSSSSSSAGPPSNNSSSPQSVKFARR 38
>gnl|CDD|184918 PRK14954, PRK14954, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 620
Score = 26.1 bits (57), Expect = 5.5
Identities = 7/33 (21%), Positives = 10/33 (30%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTS 37
P S P P + P ++ V S
Sbjct: 424 PASAPTPEQQPPVARSAPLPPSPQASAPRNVAS 456
>gnl|CDD|219404 pfam07415, Herpes_LMP2, Gammaherpesvirus latent membrane protein
(LMP2) protein. This family consists of several
Gammaherpesvirus latent membrane protein (LMP2)
proteins. Epstein-Barr virus is a human
Gammaherpesvirus that infects and establishes latency
in B lymphocytes in vivo. The latent membrane protein 2
(LMP2) gene is expressed in latently infected B cells
and encodes two protein isoforms, LMP2A and LMP2B, that
are identical except for an additional N-terminal 119
aa cytoplasmic domain which is present in the LMP2A
isoform. LMP2A is thought to play a key role in either
the establishment or the maintenance of latency and/or
the reactivation of productive infection from the
latent state. The significance of LMP2B and its role in
pathogenesis remain unclear.
Length = 489
Score = 26.4 bits (58), Expect = 5.5
Identities = 19/78 (24%), Positives = 23/78 (29%), Gaps = 7/78 (8%)
Query: 18 SSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDTGRPIFTDPISGQTICSCQYDLLN 77
P S + + V AP P + R P+ Q D
Sbjct: 29 PYYPSSFGSSWDRPGPPVPEDYDAPSHRPPPYGGSNGDRHGGYQPLGQQ-------DPSL 81
Query: 78 YQRLAAGGGPGLPLSMYS 95
Y L GG GLP YS
Sbjct: 82 YAGLGQNGGGGLPPPPYS 99
>gnl|CDD|184900 PRK14907, rplD, 50S ribosomal protein L4; Provisional.
Length = 295
Score = 26.1 bits (57), Expect = 6.1
Identities = 10/41 (24%), Positives = 14/41 (34%)
Query: 6 ESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTS 46
E A + TS + A TST A ++ S
Sbjct: 15 EKKPAAKKATTSKETAKTKKTAKTTSTKAAKKAAKVKKTKS 55
>gnl|CDD|215182 PLN02321, PLN02321, 2-isopropylmalate synthase.
Length = 632
Score = 26.1 bits (57), Expect = 6.4
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 1/57 (1%)
Query: 17 SSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGSRCCDTG-RPIFTDPISGQTICSCQ 72
SP SS A++ + + TPA RS++ +R RP S + S
Sbjct: 2 LRSPNLSSATAASPAKSLSAFTPAPTRSSASSARFPAFLARPAAARSPSLASRASSA 58
>gnl|CDD|218056 pfam04388, Hamartin, Hamartin protein. This family includes the
hamartin protein which is thought to function as a
tumour suppressor. The hamartin protein interacts with
the tuberin protein pfam03542. Tuberous sclerosis
complex (TSC) is an autosomal dominant disorder and is
characterized by the presence of hamartomas in many
organs, such as brain, skin, heart, lung, and kidney. It
is caused by mutation either TSC1 or TSC2 tumour
suppressor gene. TSC1 encodes a protein, hamartin,
containing two coiled-coil regions, which have been
shown to mediate binding to tuberin. The TSC2 gene codes
for tuberin pfam03542. These two proteins function
within the same pathway(s) regulating cell cycle, cell
growth, adhesion, and vesicular trafficking.
Length = 667
Score = 26.1 bits (57), Expect = 6.8
Identities = 13/44 (29%), Positives = 19/44 (43%), Gaps = 1/44 (2%)
Query: 4 IPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
S+ P+SSP + PP S NTST+ + R +
Sbjct: 276 FSRSSAYPNSSPRQALPPSISL-PQNTSTSGSLHSAQTSRRPNT 318
>gnl|CDD|216257 pfam01034, Syndecan, Syndecan domain. Syndecans are transmembrane
heparin sulfate proteoglycans which are implicated in
the binding of extracellular matrix components and
growth factors.
Length = 207
Score = 25.5 bits (56), Expect = 6.9
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 3 KIPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTS---TPAAPRSTS 46
K+ ++ +PS+ T++S ++ +T+ T TS T +T+
Sbjct: 79 KLTTTSSSPSNDTTTASTSTKTSPTVSTTVTTTTSPSETDTEEATTT 125
>gnl|CDD|227889 COG5602, SIN3, Histone deacetylase complex, SIN3 component
[Chromatin structure and dynamics].
Length = 1163
Score = 26.0 bits (57), Expect = 7.0
Identities = 12/39 (30%), Positives = 15/39 (38%)
Query: 9 VAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
V P SS P SS + + TS P P + P
Sbjct: 211 VTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQP 249
>gnl|CDD|240274 PTZ00112, PTZ00112, origin recognition complex 1 protein;
Provisional.
Length = 1164
Score = 26.1 bits (57), Expect = 7.2
Identities = 10/46 (21%), Positives = 19/46 (41%), Gaps = 6/46 (13%)
Query: 6 ESTVAPSSSPTS-----SSPPPSSTRASNTSTTAVT-STPAAPRST 45
S+ + SS + SSP + SN+ ++ + +ST
Sbjct: 124 SSSSSSISSSLTNISFFSSPTSIYSCLSNSLSSKHSPKVIKENQST 169
>gnl|CDD|152115 pfam11679, DUF3275, Protein of unknown function (DUF3275). This
family of proteins with unknown function appear to be
restricted to Proteobacteria.
Length = 211
Score = 25.6 bits (56), Expect = 7.6
Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 2/35 (5%)
Query: 10 APSSSPTSSSPPPSSTRASN--TSTTAVTSTPAAP 42
AP+ +P+ SP P+S RAS +AP
Sbjct: 114 APAPAPSPQSPKPASRRASRDMRRIAPFGMNASAP 148
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295). This
family is conserved in fungi but the function is not
known.
Length = 509
Score = 25.7 bits (56), Expect = 7.9
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 6 ESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPGS 49
+T A + SS P ++ ++TS++ + + R SP
Sbjct: 125 STTSADCNDSEQSSTPNLNSSDTSTSSSGALPSTSVVRGFSPSH 168
>gnl|CDD|236160 PRK08136, PRK08136, glycosyl transferase family protein;
Provisional.
Length = 317
Score = 25.6 bits (57), Expect = 8.3
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 86 GPGLPLSMYSAP-YPEGMAAYFPALGAD 112
G L LS Y+ P Y + +A +F +GA
Sbjct: 194 GAALRLSSYTHPEYRDRLAEFFSDIGAR 221
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component.
Length = 463
Score = 25.5 bits (55), Expect = 8.7
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 3 KIPESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSP 47
++ S P ++ SPP + + V P AP S P
Sbjct: 174 QVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPP 218
>gnl|CDD|237865 PRK14951, PRK14951, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 618
Score = 25.4 bits (56), Expect = 9.6
Identities = 10/37 (27%), Positives = 18/37 (48%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAA 41
+ AP++ P ++ P P + A+ A + PAA
Sbjct: 408 AAAASAPAAPPAAAPPAPVAAPAAAAPAAAPAAAPAA 444
>gnl|CDD|237871 PRK14965, PRK14965, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 576
Score = 25.5 bits (56), Expect = 9.9
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 5 PESTVAPSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPG 48
P A + P ++ P P+ + + A ++ PAA S
Sbjct: 406 PPVPPAAPARPAAARPAPAPAPPAAAAPPARSADPAAAASAGDR 449
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.310 0.125 0.378
Gapped
Lambda K H
0.267 0.0630 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,921,806
Number of extensions: 480062
Number of successful extensions: 1528
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1308
Number of HSP's successfully gapped: 302
Length of query: 122
Length of database: 10,937,602
Length adjustment: 84
Effective length of query: 38
Effective length of database: 7,211,866
Effective search space: 274050908
Effective search space used: 274050908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)