RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5912
         (122 letters)



>d1gaia_ a.102.1.1 (A:) Glucoamylase {Aspergillus awamori, variant
           x100 [TaxId: 105351]}
          Length = 472

 Score = 26.2 bits (57), Expect = 1.4
 Identities = 7/39 (17%), Positives = 15/39 (38%)

Query: 10  APSSSPTSSSPPPSSTRASNTSTTAVTSTPAAPRSTSPG 48
                 ++SS P +    S + T +  +  + P   + G
Sbjct: 434 PSWGETSASSVPGTCAATSASGTYSSVTVTSWPSIVATG 472


>d1zunb2 b.44.1.1 (B:330-434) Sulfate adenylate transferase
          subunit cysN/C, EF-Tu domain 3-like domain {Pseudomonas
          syringae pv. tomato [TaxId: 323]}
          Length = 105

 Score = 25.0 bits (54), Expect = 2.0
 Identities = 8/32 (25%), Positives = 13/32 (40%)

Query: 38 TPAAPRSTSPGSRCCDTGRPIFTDPISGQTIC 69
          +  AP +    S    TG  I  D ++  T+ 
Sbjct: 68 SLDAPIALDGYSSNRTTGAFIVIDRLTNGTVA 99


>g1gg6.1 b.47.1.2 (A:,B:,C:) (alpha,gamma)-chymotrypsin(ogen) {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 238

 Score = 24.3 bits (51), Expect = 5.4
 Identities = 6/18 (33%), Positives = 8/18 (44%), Gaps = 1/18 (5%)

Query: 45  TSPGSRCCDTGRP-IFTD 61
            S GS  C T  P ++  
Sbjct: 206 VSWGSSTCSTSTPGVYAR 223


>d1jbqa_ c.79.1.1 (A:) Cystathionine beta-synthase {Human (Homo
          sapiens) [TaxId: 9606]}
          Length = 355

 Score = 23.7 bits (50), Expect = 8.4
 Identities = 7/32 (21%), Positives = 10/32 (31%)

Query: 8  TVAPSSSPTSSSPPPSSTRASNTSTTAVTSTP 39
              S SP   + P  S +        +  TP
Sbjct: 15 GRPASESPHHHTAPAKSPKILPDILKKIGDTP 46


>d1qu9a_ d.79.1.1 (A:) Conserved 'hypothetical' protein YjgF
          {Escherichia coli [TaxId: 562]}
          Length = 127

 Score = 23.2 bits (49), Expect = 8.7
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 3/35 (8%)

Query: 33 TAVTSTPAAPRSTSPGSRCCDTGRPIFTDPISGQT 67
          +   +T  AP +  P  +  D G  I     SGQ 
Sbjct: 1  SKTIATENAPAAIGPYVQGVDLGNMII---TSGQI 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.310    0.125    0.378 

Gapped
Lambda     K      H
   0.267   0.0404    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,233
Number of extensions: 16786
Number of successful extensions: 59
Number of sequences better than 10.0: 1
Number of HSP's gapped: 59
Number of HSP's successfully gapped: 10
Length of query: 122
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 47
Effective length of database: 1,377,846
Effective search space: 64758762
Effective search space used: 64758762
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.7 bits)