BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5913
(341 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q4LDQ3|IRX5_XENTR Iroquois-class homeodomain protein irx-5 OS=Xenopus tropicalis
GN=irx5 PE=2 SV=1
Length = 482
Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/138 (61%), Positives = 101/138 (73%), Gaps = 3/138 (2%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A RKNATR+ T+TLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 111 AYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 170
Query: 66 NKMTWEPRNRVEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDRPPNHRLDLLDR 125
NKMTW PRNR EDE+++ + + + DP+ L+ K G + D R P+ +D DR
Sbjct: 171 NKMTWTPRNRSEDEEDDENIDLEKNEEDDPR-KLEEKGDQDGDAGDQKRSPS-AVD-FDR 227
Query: 126 PGGAVDTGSEWSESRPDS 143
G V G E ++R DS
Sbjct: 228 LEGEVRQGKELDQTRSDS 245
>sp|Q24248|ARA_DROME Homeobox protein araucan OS=Drosophila melanogaster GN=ara PE=1
SV=2
Length = 717
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 119/226 (52%), Gaps = 39/226 (17%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
ARRKNATRE+T+TLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 257 ARRKNATRESTATLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 316
Query: 66 NKMTWEPRNRV-------------EDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDG 112
NKMTWEP+NR + ED S G S + + +D + D
Sbjct: 317 NKMTWEPKNRTDDDDDALVSDDEKDKEDLEPSKGSQGSVSLAKDETKEEED-----AIDE 371
Query: 113 DRPPNHRLDLLDRPGGAVDTGSEWSESRPDSGPDSPECLFERPHHFLHPAYHGLHHPHAR 172
D+ + ++L G GS G S P+H HPAY+ A
Sbjct: 372 DQKCLGQANILRAGFGYPSAGSGSGGYPGGGGSSSGHPGGYHPYHHQHPAYY-----QAG 426
Query: 173 FQSSPPPSHGPGATIS----------------PVNVNKPRIWSLAD 202
Q P HG + + P+ KP+IWSLAD
Sbjct: 427 QQGGMLPFHGENSKLQTDLGDPKNQLGRDCGVPIPATKPKIWSLAD 472
>sp|P78412|IRX6_HUMAN Iroquois-class homeodomain protein IRX-6 OS=Homo sapiens GN=IRX6
PE=2 SV=3
Length = 446
Score = 152 bits (385), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 74/107 (69%), Positives = 89/107 (83%), Gaps = 3/107 (2%)
Query: 1 MDINGA-RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59
++++GA RRKNATRETTSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANAR
Sbjct: 142 VELSGAGRRKNATRETTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 201
Query: 60 RRLKKENKMTWEPRNR--VEDEDNNNDDHSDGRKSADPKDHLDSKDS 104
RRLKKENKMTW P+N+ E + ++ S G +AD K+ S+++
Sbjct: 202 RRLKKENKMTWAPKNKGGEERKAEGGEEDSLGCLTADTKEVTASQEA 248
>sp|P54269|CAUP_DROME Homeobox protein caupolican OS=Drosophila melanogaster GN=caup PE=2
SV=2
Length = 693
Score = 152 bits (384), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 81/132 (61%), Positives = 92/132 (69%), Gaps = 12/132 (9%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
ARRKNATRE+T+TLKAWL+EHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 228 ARRKNATRESTATLKAWLSEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 287
Query: 66 NKMTWEPRNRVE-------DEDNNNDDHSDGRK----SADPKDHLDSKDSGTGSSEDGDR 114
NKMTWEP+N+ E +D D DG K + DP + L + G E D
Sbjct: 288 NKMTWEPKNKTEDDDDGMMSDDEKEKDAGDGGKLSTEAFDPGNQLIKSELGKAEKEV-DS 346
Query: 115 PPNHRLDLLDRP 126
+ +LDL P
Sbjct: 347 SGDQKLDLDREP 358
>sp|P78413|IRX4_HUMAN Iroquois-class homeodomain protein IRX-4 OS=Homo sapiens GN=IRX4
PE=2 SV=2
Length = 519
Score = 150 bits (380), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 73/79 (92%), Gaps = 1/79 (1%)
Query: 1 MDINGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 60
MD +G RRKNATRETTSTLKAWL EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARR
Sbjct: 140 MD-SGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 198
Query: 61 RLKKENKMTWEPRNRVEDE 79
RLKKENKMTW PRN+ DE
Sbjct: 199 RLKKENKMTWPPRNKCADE 217
>sp|Q9QY61|IRX4_MOUSE Iroquois-class homeodomain protein IRX-4 OS=Mus musculus GN=Irx4
PE=2 SV=1
Length = 515
Score = 150 bits (379), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 68/76 (89%), Positives = 71/76 (93%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
+G RRKNATRETTSTLKAWL EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK
Sbjct: 143 SGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 202
Query: 64 KENKMTWEPRNRVEDE 79
KENKMTW PRN+ DE
Sbjct: 203 KENKMTWPPRNKCADE 218
>sp|Q9JKQ4|IRX5_MOUSE Iroquois-class homeodomain protein IRX-5 OS=Mus musculus GN=Irx5
PE=2 SV=1
Length = 484
Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 106/239 (44%), Positives = 131/239 (54%), Gaps = 36/239 (15%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A RKNATR+ T+TLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 114 AYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 173
Query: 66 NKMTWEPRNR---VEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDRPPNHRLDL 122
NKMTW PRNR E+E+N + + +D + P+D D + +G +E RL
Sbjct: 174 NKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDLEGPESGGAEQKATAGCERLQG 233
Query: 123 LDRPGGAVDTGS--------EWSESRPDSGPDSPECLFERPHHFLHPAY------HGLHH 168
P G GS SE R D P P P PA G H+
Sbjct: 234 PLSPAGKETEGSLSDSDFKESSSEGRHDELPRPPRAGESSP---AGPATARLAEDAGPHY 290
Query: 169 PHARFQSSPPPSHG---PGATISPV-------------NVNKPRIWSLADMASKENDIR 211
P + P PS G PG+ S V + KP++WSLA++A+ + ++
Sbjct: 291 PASVPAPGPHPSAGELPPGSGGSSVIHSPPPPPPPPPAVLAKPKLWSLAEIATSSDKVK 349
>sp|Q90XW5|IRX5_XENLA Iroquois-class homeodomain protein irx-5 OS=Xenopus laevis GN=irx5
PE=2 SV=1
Length = 474
Score = 149 bits (377), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 95/242 (39%), Positives = 123/242 (50%), Gaps = 36/242 (14%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A RKNA+R+ T+TLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 111 AYRKNASRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 170
Query: 66 NKMTWEPRNR----------------------VEDEDNNNDDHSDGRKSADPKDHLDSKD 103
NKMTW PRNR +E+ N + D D ++S D D + +
Sbjct: 171 NKMTWTPRNRSEDEDDDENIDLEKNEEDDPSKLEENGNQDGDAGDQKRSPDGVDFVRLEG 230
Query: 104 SGTGSSEDGDRPPNHRLDLLDRPGGAVDTGSEWSESRPDSGPDSPEC-----LFERPHHF 158
E N L+ LD G + S SP+ L H
Sbjct: 231 EVHLGKELDQTRNNSELNELDERNGHLSNSSSPPTPPLCPPDQSPQAQEDQNLHGHTHQS 290
Query: 159 LHPAYHGLHHPHA--RFQSSPPPSHGPGATIS-------PVNVNKPRIWSLADMASKEND 209
+ H + PH + HGP + P + +KP++WSLA++A+ +
Sbjct: 291 IQQLLHHSNQPHPLDLVNRNTSVQHGPVTNNATSVIHSPPASTSKPKLWSLAEIATSSDK 350
Query: 210 IR 211
++
Sbjct: 351 VK 352
>sp|Q9YGS0|IRX4_CHICK Iroquois-class homeodomain protein IRX-4 OS=Gallus gallus GN=IRX4
PE=2 SV=1
Length = 485
Score = 149 bits (377), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 70/79 (88%), Positives = 72/79 (91%), Gaps = 1/79 (1%)
Query: 1 MDINGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 60
MD G RRKNATRETTSTLKAWL EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARR
Sbjct: 139 MD-GGTRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARR 197
Query: 61 RLKKENKMTWEPRNRVEDE 79
RLKKENKMTW PRN+ DE
Sbjct: 198 RLKKENKMTWPPRNKCSDE 216
>sp|B7ZRT8|IRX4B_XENLA Iroquois-class homeodomain protein irx-4-B OS=Xenopus laevis
GN=irx4-b PE=2 SV=1
Length = 495
Score = 148 bits (373), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 75/119 (63%), Positives = 83/119 (69%), Gaps = 12/119 (10%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
RRKNATRETTSTLKAWL EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN
Sbjct: 144 RRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 203
Query: 67 KMTWEPRNRVEDE------------DNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGD 113
KMTW PRN+ DE D+ + +K+ D + H + K ED D
Sbjct: 204 KMTWPPRNKCSDEKRPYDEEEEEEEDSQKATIKNEKKTVDEEIHREEKALDLSDLEDFD 262
>sp|Q90XW6|IRX4A_XENLA Iroquois-class homeodomain protein irx-4-A OS=Xenopus laevis
GN=irx4-a PE=2 SV=1
Length = 496
Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/74 (90%), Positives = 70/74 (94%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+RRKNATRETTSTLKAWL EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 143 SRRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 202
Query: 66 NKMTWEPRNRVEDE 79
NKMTW PRN+ DE
Sbjct: 203 NKMTWPPRNKCSDE 216
>sp|Q688D0|IRX4_XENTR Iroquois-class homeodomain protein irx-4 OS=Xenopus tropicalis
GN=irx4 PE=2 SV=1
Length = 496
Score = 147 bits (370), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 67/73 (91%), Positives = 69/73 (94%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
RRKNATRETTSTLKAWL EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN
Sbjct: 144 RRKNATRETTSTLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 203
Query: 67 KMTWEPRNRVEDE 79
KMTW PRN+ DE
Sbjct: 204 KMTWPPRNKCSDE 216
>sp|Q9BZI1|IRX2_HUMAN Iroquois-class homeodomain protein IRX-2 OS=Homo sapiens GN=IRX2
PE=1 SV=2
Length = 471
Score = 147 bits (370), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 100/234 (42%), Positives = 128/234 (54%), Gaps = 42/234 (17%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A RKNATR+ T+TLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 116 AYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 175
Query: 66 NKMTWEPRNR-----------VEDEDNNNDDHSDGRKSADPKD----HLDSKDSGTGSSE 110
NKMTW PRN+ +D + D +G +++ + H+DS + S+E
Sbjct: 176 NKMTWAPRNKSEDEDEDEGDATRSKDESPDKAQEGTETSAEDEGISLHVDSLTDHSCSAE 235
Query: 111 -DGDRPPNHRLDLLDRPGGAVDTGSEWSESRPDSGPDSPECL-----FERPHHFLHPAYH 164
DG++ P D L ++GSE + D D + P
Sbjct: 236 SDGEKLPCRAGDPL------CESGSECKDKYDDLEDDEDDDEEGERGLAPPKPVTSSPLT 289
Query: 165 GLHHPHARFQSSPPPSHGP--------GATISPVN---VNKPRIWSLADMASKE 207
GL P SPPP P G+ SP +KP++WSLA++A+ +
Sbjct: 290 GLEAPLL----SPPPEAAPRGGRKTPQGSRTSPGAPPPASKPKLWSLAEIATSD 339
>sp|P81066|IRX2_MOUSE Iroquois-class homeodomain protein IRX-2 OS=Mus musculus GN=Irx2
PE=2 SV=2
Length = 474
Score = 146 bits (369), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 98/237 (41%), Positives = 129/237 (54%), Gaps = 46/237 (19%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A RKNATR+ T+TLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 117 AYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 176
Query: 66 NKMTWEPRNR-----------VEDEDNNNDDHSDGRKSADPKD----HLDSKDSGTGSSE 110
NKMTW PRN+ ++ ++D DG +++ + H+DS + S+E
Sbjct: 177 NKMTWAPRNKSEDEDEDEGDASRSKEESSDKAQDGTETSAEDEGISLHVDSLTDHSCSAE 236
Query: 111 -DGDRPPNHRLDLLDRPGGAVDTGSEWSE-------------------SRPDSGPDSPEC 150
DG++ P D L ++GSE + + P SP
Sbjct: 237 SDGEKLPCRAGDAL------CESGSECKDKFEDLEDEEDEEDECERDLAPPKPVTSSPLT 290
Query: 151 LFERPHHFLHPAYHGLHHPHARFQSSPPPSHGPGATISPVNVNKPRIWSLADMASKE 207
E P L PA + ++ PGA P +KP++WSLA++A+ +
Sbjct: 291 GVEAP--LLSPAPEAAPRGGSGGKTPLGSRTSPGA---PPPASKPKLWSLAEIATSD 342
>sp|Q6NVN3|IRX3_XENTR Iroquois-class homeodomain protein irx-3 OS=Xenopus tropicalis
GN=irx3 PE=2 SV=1
Length = 448
Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 103/237 (43%), Positives = 120/237 (50%), Gaps = 48/237 (20%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+R KNATRE+TSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 110 SRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 169
Query: 66 NKMTWEPRNRVEDEDN-------------------NNDDHSDGRKSADPKD-----HLDS 101
NKMTW PR+R ++E N N D D D D H DS
Sbjct: 170 NKMTWAPRSRTDEEGNAYGSDHEEDKHEDDEEIDLENIDTEDIESKEDLDDPDTDIHSDS 229
Query: 102 KDSGTGSSEDGD-----RPPNHRLDLLDRPGGAVDTGSEWSESRPDSGPDSPECLFERPH 156
K SE D P RL L G +E + + C
Sbjct: 230 KTDARSDSEASDGFEDLNAPEDRL--LKSVVGQRQVLNEEPQDK---------CALSSDA 278
Query: 157 HFLHPAYHGLHHPHARFQSSPPPSHGPGATISPVNVNKPRIWSLADMASKENDIRSS 213
PA + R SSPP + A +KP+IWSLA+ A+ ++ R S
Sbjct: 279 KASQPACEQIKL--DRIPSSPPLENNIPA------AHKPKIWSLAETATTPDNPRRS 327
>sp|P78411|IRX5_HUMAN Iroquois-class homeodomain protein IRX-5 OS=Homo sapiens GN=IRX5
PE=1 SV=3
Length = 483
Score = 145 bits (365), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 69/100 (69%), Positives = 77/100 (77%), Gaps = 9/100 (9%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A RKNATR+ T+TLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 115 AYRKNATRDATATLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 174
Query: 66 NKMTWEPRNR---------VEDEDNNNDDHSDGRKSADPK 96
NKMTW PRNR ++ E N+ D+ DP+
Sbjct: 175 NKMTWTPRNRSEDEEEEENIDLEKNDEDEPQKPEDKGDPE 214
>sp|Q9ER75|IRX6_MOUSE Iroquois-class homeodomain protein IRX-6 OS=Mus musculus GN=Irx6
PE=2 SV=2
Length = 438
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 91/212 (42%), Positives = 117/212 (55%), Gaps = 11/212 (5%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
+ RRKNATRE+TS LKAWL+EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK
Sbjct: 143 SAGRRKNATRESTSALKAWLHEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 202
Query: 64 KENKMTWEPRNR-VEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDRPPNHRLDL 122
KENKMTW P+N+ E+ ++ + S G + D KD S+++ D + +
Sbjct: 203 KENKMTWAPKNKGGEERKADSGEDSLGCLNGDTKDATASQEARGLRLSDLEDLEEEEEEE 262
Query: 123 LDRPGGAVDTGSEWSESRPDSGPDSPECLFERPHHFLHPAYHGLHHPHARFQSSPPPSH- 181
AV ++ + + P C + L GL P F +P
Sbjct: 263 EAEEEAAVSAARRLADFQKSTQPLPAPCAAAQ-ERCLESRECGLGLPRFSFTEAPQSGEA 321
Query: 182 --------GPGATISPVNVNKPRIWSLADMAS 205
GP + + +KPRIWSLA A+
Sbjct: 322 DFITAEPGGPTMILHYPSGHKPRIWSLAHTAA 353
>sp|P81067|IRX3_MOUSE Iroquois-class homeodomain protein IRX-3 OS=Mus musculus GN=Irx3
PE=1 SV=2
Length = 507
Score = 144 bits (364), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 72/76 (94%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+R KNATRE+TSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 132 SRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 191
Query: 66 NKMTWEPRNRVEDEDN 81
NKMTW PR+R ++E N
Sbjct: 192 NKMTWAPRSRTDEEGN 207
>sp|O42261|IRX3_XENLA Iroquois-class homeodomain protein irx-3 OS=Xenopus laevis GN=irx3
PE=2 SV=2
Length = 448
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 72/76 (94%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+R KNATRE+TSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 110 SRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 169
Query: 66 NKMTWEPRNRVEDEDN 81
NKMTW PR+R ++E N
Sbjct: 170 NKMTWAPRSRTDEEGN 185
>sp|P78415|IRX3_HUMAN Iroquois-class homeodomain protein IRX-3 OS=Homo sapiens GN=IRX3
PE=2 SV=3
Length = 501
Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/76 (86%), Positives = 72/76 (94%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+R KNATRE+TSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 129 SRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 188
Query: 66 NKMTWEPRNRVEDEDN 81
NKMTW PR+R ++E N
Sbjct: 189 NKMTWAPRSRTDEEGN 204
>sp|Q6DCQ1|IRX2_XENLA Iroquois-class homeodomain protein irx-2 OS=Xenopus laevis GN=irx2
PE=2 SV=1
Length = 455
Score = 143 bits (360), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 80/149 (53%), Positives = 94/149 (63%), Gaps = 22/149 (14%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A RKNATR+ T+TLKAWL EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 112 AYRKNATRDATATLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 171
Query: 66 NKMTWEPRN-------------RVEDEDNNNDDHSDGRKSADP--KDHLDS-KDSGTGSS 109
NKMTW PRN RV++E + S+ + D H+DS D +
Sbjct: 172 NKMTWAPRNKSDDEDDDEGDGERVKEEQSEKAQDSNETSAEDEGISLHVDSLTDHSCSAD 231
Query: 110 EDGDRPPNHRLDLLDRPGGAVDTGSEWSE 138
DG++ P D L ++GSE E
Sbjct: 232 SDGEKLPCRAADHL------CESGSESKE 254
>sp|Q66IK1|IRX2_XENTR Iroquois-class homeodomain protein irx-2 OS=Xenopus tropicalis
GN=irx2 PE=2 SV=1
Length = 456
Score = 142 bits (358), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 79/149 (53%), Positives = 93/149 (62%), Gaps = 22/149 (14%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
A RKNATR+ T+TLKAWL EH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 112 AYRKNATRDATATLKAWLQEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 171
Query: 66 NKMTWEPRN-------------RVEDEDNNNDDHSDGRKSADP--KDHLDS-KDSGTGSS 109
NKMTW PRN RV++E + + + D H+DS D +
Sbjct: 172 NKMTWAPRNKSEDEDDDEGDGERVKEEQSEKAQDCNETSAEDEGISLHVDSLTDHSCSAD 231
Query: 110 EDGDRPPNHRLDLLDRPGGAVDTGSEWSE 138
DG++ P D L ++GSE E
Sbjct: 232 SDGEKLPCRATDHL------CESGSESKE 254
>sp|P81068|IRX1_MOUSE Iroquois-class homeodomain protein IRX-1 OS=Mus musculus GN=Irx1
PE=2 SV=4
Length = 480
Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 107/263 (40%), Positives = 134/263 (50%), Gaps = 38/263 (14%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
R KNATRE+TSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN
Sbjct: 130 RPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 189
Query: 67 KMTWEPRNRVE------------DEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDR 114
K+TW R++ + D + DD +S D D +D +D + ++ D+
Sbjct: 190 KVTWGARSKDQEDGALFGSDTEGDPEKAEDDEEIDLESID-IDQIDERDGDQSNEDEEDK 248
Query: 115 PPNHRLDLLDRPGGAVDTGSEWSESRPDSGPDSPECLFERPHHFLHPAYHGLHHPHAR-- 172
R + P A D S S + DSP L + P L P A
Sbjct: 249 AEAPRARVAP-PASARDQSSPLSAAETLKSQDSPLGLVK---EVSEPGSTRLLSPGAAAV 304
Query: 173 -FQSSPPPSHGPGATISPVNVNKPRIWSLADMASKENDIRSSLPSSVFSSGKMISPLAGR 231
Q +P H +KP+IWSLA+ A+ + + P S P +G
Sbjct: 305 GLQGAP---H-----------SKPKIWSLAETATSPDGAPKASPPPPSSHASAHGPPSGS 350
Query: 232 PHHLPHPNSYRHDLYRLYGSHLG 254
P L HP + LY H+G
Sbjct: 351 P--LQHPAFLPS--HGLYTCHIG 369
>sp|Q6F2E3|IRX1_XENTR Iroquois-class homeodomain protein irx-1 OS=Xenopus tropicalis
GN=irx1 PE=2 SV=1
Length = 467
Score = 138 bits (348), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 103/250 (41%), Positives = 132/250 (52%), Gaps = 36/250 (14%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
R KNATRE+TSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN
Sbjct: 129 RPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 188
Query: 67 KMTWEPRNRVEDEDNNNDDHSDGRKSADPKD-HLDSKDSGTGSSEDGDRPPNHRLDLLDR 125
K+TW R++ +D +D D K+ D ++ L+S D DG++ + L+
Sbjct: 189 KVTWGARSKEDDNIFGSDTEGDHEKNEDDEEIDLESIDIDKIDDNDGEQSNEEEDEKLEH 248
Query: 126 PGGAVDTGSEWSESRPDSGPDSPECLFERPHHFLHPAYHGLHHPHARFQSSPPPSHGPGA 185
+ G + S F++ + P+ GL +
Sbjct: 249 ----LRQGEKES--------------FKKESEVMIPSSDGLKSKDSLSLGKESSDTSNTR 290
Query: 186 TISP-----VNV---NKPRIWSLADMA-SKENDIRSSLPSSVFSSGKMISPLAGRPHHLP 236
+SP + V NKP+IWSLA+ A S + ++SS P S SP P LP
Sbjct: 291 IVSPGGQGNIQVPPHNKPKIWSLAETATSPDGALKSSPPP---SQANHTSPPIQHPAFLP 347
Query: 237 HPNSYRHDLY 246
H LY
Sbjct: 348 -----SHGLY 352
>sp|Q9YGK8|IRX1A_XENLA Iroquois-class homeodomain protein irx-1-A OS=Xenopus laevis
GN=irx1-a PE=2 SV=1
Length = 467
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 65/89 (73%), Positives = 74/89 (83%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
R KNATRE+T TLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 128 GRPKNATRESTGTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 187
Query: 66 NKMTWEPRNRVEDEDNNNDDHSDGRKSAD 94
NK+TW R++ +D +D+ D K+ D
Sbjct: 188 NKVTWGARSKEDDNIFGSDNEGDHEKNED 216
>sp|Q2TAQ8|IRX1B_XENLA Iroquois-class homeodomain protein irx-1-B OS=Xenopus laevis
GN=irx1-b PE=2 SV=1
Length = 462
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 103/245 (42%), Positives = 127/245 (51%), Gaps = 24/245 (9%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
R KNATRE+TSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE
Sbjct: 123 GRPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 182
Query: 66 NKMTWEPRNRVEDEDNNNDDHSDGRKSADPKD-HLDSKDSGTGSSEDGDRPPNHRLDLLD 124
NK+TW + +D +D+ D K+ D ++ L+S D DG++ + LD
Sbjct: 183 NKVTWGAMGKEDDNIFGSDNEGDHEKNEDDEEIDLESIDIDKIDDNDGEQSNEEEDEKLD 242
Query: 125 --RPGGAVDTGSEWSESRPDSGPDSPECLFERPHHFLHPAYHGLHHPHARFQSSPPPSHG 182
R G V E P S P+ + + P + PP
Sbjct: 243 HFRHGEKVSLKKESEVMIPSSDGLKPKDSLSLGKECSDTSNTRIVSPGGQGNIQAPPH-- 300
Query: 183 PGATISPVNVNKPRIWSLADMA-SKENDIRSSLPSSVFSSGKMISPLAGRPHHLPHPNSY 241
+KP+IWSLA+ A S + ++SS P S SP P LP
Sbjct: 301 ----------SKPKIWSLAETATSPDGALKSSPPP---SQANHTSPQMQHPAFLP----- 342
Query: 242 RHDLY 246
H LY
Sbjct: 343 SHGLY 347
>sp|P78414|IRX1_HUMAN Iroquois-class homeodomain protein IRX-1 OS=Homo sapiens GN=IRX1
PE=1 SV=3
Length = 480
Score = 137 bits (345), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 73/112 (65%), Positives = 85/112 (75%), Gaps = 5/112 (4%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
R KNATRE+TSTLKAWLNEH+KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN
Sbjct: 130 RPKNATRESTSTLKAWLNEHRKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 189
Query: 67 KMTWEPRNRVEDEDN---NNDDHSDGRKSADPKD-HLDSKDSGTGSSEDGDR 114
K+TW R++ + ED +D D K+ D ++ L+S D DGD+
Sbjct: 190 KVTWGARSK-DQEDGALFGSDTEGDPEKAEDDEEIDLESIDIDKIDEHDGDQ 240
>sp|Q93348|IRX_CAEEL Putative iroquois-class homeodomain protein irx-1 OS=Caenorhabditis
elegans GN=irx-1 PE=3 SV=3
Length = 377
Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 77/218 (35%), Positives = 105/218 (48%), Gaps = 76/218 (34%)
Query: 3 INGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
++G +++NATRE T+ LK WL+ H+KNPYP+K +K+MLA+ T MTLTQVSTWFANARRRL
Sbjct: 114 LDGIKKRNATREATAPLKDWLHSHRKNPYPSKADKVMLAVGTGMTLTQVSTWFANARRRL 173
Query: 63 KKENKMTWEPRNRVEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDRPPNHRLDL 122
KKENKMTW P+NR DG + + D
Sbjct: 174 KKENKMTWSPQNR----------RGDGCDDDE----------------------DDDDDD 201
Query: 123 LDRPGGAVDTGSEWSESRPDSGPDSPECLFERPHHFLHPAYHGLHHPHARFQSSPPPSHG 182
++RP + SE E LF +PH +SP PS G
Sbjct: 202 MNRPSSSTSINSE----------RKGESLFGKPH-----------------LASPTPSGG 234
Query: 183 PGAT----------ISPVNVN-------KPRIWSLADM 203
G + +SP+ + KP++WS+AD+
Sbjct: 235 SGGSDELTTPKKELVSPIPNDDSESPKRKPKMWSIADV 272
>sp|Q8BIA3|MKX_MOUSE Homeobox protein Mohawk OS=Mus musculus GN=Mkx PE=2 SV=1
Length = 353
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 43/117 (36%), Positives = 67/117 (57%), Gaps = 14/117 (11%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK---K 64
++ A ++ LK WL +H+ NPYPTK EKI+LA+ ++MTL QVS WFANARRRLK +
Sbjct: 74 KRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNWFANARRRLKNTVR 133
Query: 65 ENKMTWEPRNRVEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDRPPNHRLD 121
+ ++W R ++ ++ + + L G SEDG+ PP + ++
Sbjct: 134 QPDLSWALRIKLYNKYVQGN-----------AERLSVSSDGDSCSEDGENPPRNHMN 179
>sp|Q8IYA7|MKX_HUMAN Homeobox protein Mohawk OS=Homo sapiens GN=MKX PE=2 SV=2
Length = 352
Score = 78.6 bits (192), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 44/112 (39%), Positives = 62/112 (55%), Gaps = 15/112 (13%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK---K 64
++ A ++ LK WL +H+ NPYPTK EKI+LA+ ++MTL QVS WFANARRRLK +
Sbjct: 74 KRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGSQMTLVQVSNWFANARRRLKNTVR 133
Query: 65 ENKMTWEPRNRVEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDRPP 116
+ ++W R ++ + K S S SEDG+ PP
Sbjct: 134 QPDLSWALRIKLYN------------KYVQGNAERLSVSSDDSCSEDGENPP 173
>sp|Q5R6P2|MKX_PONAB Homeobox protein Mohawk OS=Pongo abelii GN=MKX PE=2 SV=1
Length = 352
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 50/72 (69%), Gaps = 3/72 (4%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK---K 64
++ A ++ LK WL +H+ NPYPTK EKI+LA+ +MTL QVS WFANARRRLK +
Sbjct: 74 KRQALQDMARPLKQWLYKHRDNPYPTKTEKILLALGPQMTLVQVSNWFANARRRLKNTVR 133
Query: 65 ENKMTWEPRNRV 76
+ ++W R ++
Sbjct: 134 QPDLSWALRIKL 145
>sp|Q90655|AKR_CHICK Homeobox protein AKR OS=Gallus gallus PE=2 SV=1
Length = 269
Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
RR N +E+ L+ WL EH+ N YP++ EK++L+ T ++ QV WF NARRRL
Sbjct: 38 RRGNLPKESVQILRDWLYEHRYNAYPSEQEKVLLSRQTHLSTLQVCNWFINARRRL 93
>sp|P41817|CUP9_YEAST Homeobox protein CUP9 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=CUP9 PE=1 SV=1
Length = 306
Score = 62.0 bits (149), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 33/58 (56%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
N RR N +ET L WL H NPYPT+ EK L I T +T Q+S WF N RRR
Sbjct: 162 NSGRRSNLPKETVQILNTWLLNHLNNPYPTQQEKRELLIKTGLTKIQLSNWFINVRRR 219
>sp|P70284|TGIF1_MOUSE Homeobox protein TGIF1 OS=Mus musculus GN=Tgif1 PE=2 SV=2
Length = 272
Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
RR N +E+ L+ WL EH+ N YP++ EK +L+ T ++ QV WF NARRRL
Sbjct: 38 RRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRL 93
>sp|Q8SRR1|HD12_ENCCU Homeobox protein HD-12 OS=Encephalitozoon cuniculi (strain GB-M1)
GN=HD-12 PE=3 SV=1
Length = 193
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 37/57 (64%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
RR N +E + L+ WL +H PYP+K EK ML+ T + L+Q+ WFANARRR+
Sbjct: 125 IRRINFPKEISKILRKWLKKHLTYPYPSKIEKKMLSKETGLKLSQIDNWFANARRRI 181
>sp|Q54VB4|HBX9_DICDI Homeobox protein 9 OS=Dictyostelium discoideum GN=hbx9 PE=3 SV=1
Length = 639
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 34/49 (69%)
Query: 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
E TS LK WL EH +PYPT+ EK+ LA T ++ Q++ WF NARRR+
Sbjct: 569 EATSILKKWLFEHNMHPYPTEEEKVALANSTFLSFNQINNWFTNARRRI 617
>sp|Q5IS58|TGIF1_PANTR Homeobox protein TGIF1 OS=Pan troglodytes GN=TGIF1 PE=2 SV=1
Length = 401
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
RR N +E+ L+ WL EH+ N YP++ EK +L+ T ++ QV WF NARRRL
Sbjct: 167 RRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRL 222
>sp|Q15583|TGIF1_HUMAN Homeobox protein TGIF1 OS=Homo sapiens GN=TGIF1 PE=1 SV=3
Length = 401
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
RR N +E+ L+ WL EH+ N YP++ EK +L+ T ++ QV WF NARRRL
Sbjct: 167 RRGNLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRL 222
>sp|Q99687|MEIS3_HUMAN Homeobox protein Meis3 OS=Homo sapiens GN=MEIS3 PE=1 SV=3
Length = 375
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 2 DINGARRKNATR-----ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFA 56
D++ RR+N R T+ ++AWL +H +PYP++ +K LA T +T+ QV+ WF
Sbjct: 255 DLDQERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFI 314
Query: 57 NARRRLKK 64
NARRR+ +
Sbjct: 315 NARRRIVQ 322
>sp|P97368|MEIS3_MOUSE Homeobox protein Meis3 OS=Mus musculus GN=Meis3 PE=2 SV=2
Length = 378
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 43/68 (63%), Gaps = 5/68 (7%)
Query: 2 DINGARRKNATR-----ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFA 56
D++ RR+N R T+ ++AWL +H +PYP++ +K LA T +T+ QV+ WF
Sbjct: 258 DLDLERRRNKKRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFI 317
Query: 57 NARRRLKK 64
NARRR+ +
Sbjct: 318 NARRRIVQ 325
>sp|O46339|HTH_DROME Homeobox protein homothorax OS=Drosophila melanogaster GN=hth PE=1
SV=1
Length = 487
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 43/74 (58%), Gaps = 5/74 (6%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR-- 61
N +R + T+ L+AWL +H +PYP++ +K LA T +T+ QV+ WF NARRR
Sbjct: 365 NQKKRGIFPKVATNILRAWLFQHLTHPYPSEDQKKQLAQDTGLTILQVNNWFINARRRIV 424
Query: 62 ---LKKENKMTWEP 72
+ + N+ + P
Sbjct: 425 QPMIDQSNRAVYTP 438
>sp|P53147|TOS8_YEAST Homeobox protein TOS8 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=TOS8 PE=3 SV=1
Length = 276
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 33/55 (60%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
+R N + T S L WL+EH NPYPT EK L T +T Q+S WF NARRR
Sbjct: 197 KRSNLPKATVSILNKWLHEHVNNPYPTVQEKRELLAKTGLTKLQISNWFINARRR 251
>sp|Q8S897|BLH5_ARATH BEL1-like homeodomain protein 5 OS=Arabidopsis thaliana GN=BLH5
PE=2 SV=2
Length = 431
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 9/79 (11%)
Query: 16 TSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPRNR 75
S L++WL EH +PYP +K+MLA T +T +QVS WF NAR R+ W+P
Sbjct: 240 VSVLRSWLFEHFLHPYPRDLDKVMLAKQTGLTKSQVSNWFINARVRM-------WKP--L 290
Query: 76 VEDEDNNNDDHSDGRKSAD 94
VE+ + D + RK +D
Sbjct: 291 VEELYSEEMDIEESRKGSD 309
>sp|Q9FXG8|BLH10_ARATH BEL1-like homeodomain protein 10 OS=Arabidopsis thaliana GN=BLH10
PE=1 SV=1
Length = 538
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 15 TTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEP 72
+ S L+AWL EH +PYP + EKIMLA T ++ QV+ WF NAR RL W+P
Sbjct: 362 SVSVLRAWLFEHFLHPYPKESEKIMLAKQTGLSKNQVANWFINARVRL-------WKP 412
>sp|Q5R6L1|PKNX2_PONAB Homeobox protein PKNOX2 OS=Pongo abelii GN=PKNOX2 PE=2 SV=1
Length = 472
Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
+R + T+ +++WL +H +PYPT+ EK +A T +TL QV+ WF NARRR+
Sbjct: 291 KRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFVNARRRI 346
>sp|Q96KN3|PKNX2_HUMAN Homeobox protein PKNOX2 OS=Homo sapiens GN=PKNOX2 PE=1 SV=2
Length = 472
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
+R + T+ +++WL +H +PYPT+ EK +A T +TL QV+ WF NARRR+
Sbjct: 291 KRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRI 346
>sp|Q8BG99|PKNX2_MOUSE Homeobox protein PKNOX2 OS=Mus musculus GN=Pknox2 PE=2 SV=1
Length = 474
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
+R + T+ +++WL +H +PYPT+ EK +A T +TL QV+ WF NARRR+
Sbjct: 291 KRGVLPKHATNIMRSWLFQHLMHPYPTEDEKRQIAAQTNLTLLQVNNWFINARRRI 346
>sp|Q9GZN2|TGIF2_HUMAN Homeobox protein TGIF2 OS=Homo sapiens GN=TGIF2 PE=1 SV=1
Length = 237
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62
RR N +E+ L+ WL H+ N YP++ EK+ L+ T +++ Q+ WF NARRRL
Sbjct: 21 RRGNLPKESVKILRDWLYLHRYNAYPSEQEKLSLSGQTNLSVLQICNWFINARRRL 76
>sp|Q9FWS9|BLH3_ARATH BEL1-like homeodomain protein 3 OS=Arabidopsis thaliana GN=BLH3
PE=1 SV=1
Length = 524
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%), Gaps = 7/58 (12%)
Query: 15 TTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEP 72
+ S L+AWL EH +PYP + EKIML+ T ++ QV+ WF NAR RL W+P
Sbjct: 357 SVSILRAWLFEHFLHPYPKESEKIMLSKQTGLSKNQVANWFINARVRL-------WKP 407
>sp|Q6DIF3|MEIS3_XENTR Homeobox protein meis3 OS=Xenopus tropicalis GN=meis3 PE=2 SV=2
Length = 453
Score = 57.4 bits (137), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+R + T+ ++AWL +H +PYP++ +K LA T +T+ QV+ WF NARRR+ +
Sbjct: 270 KRGIFPKVATNIMRAWLFQHLSHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQ 327
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.308 0.126 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 146,640,031
Number of Sequences: 539616
Number of extensions: 6911490
Number of successful extensions: 87246
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 511
Number of HSP's that attempted gapping in prelim test: 59764
Number of HSP's gapped (non-prelim): 23202
length of query: 341
length of database: 191,569,459
effective HSP length: 118
effective length of query: 223
effective length of database: 127,894,771
effective search space: 28520533933
effective search space used: 28520533933
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 61 (28.1 bits)