Query psy5913
Match_columns 341
No_of_seqs 212 out of 1267
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 21:39:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5913.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5913hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.7 5.6E-18 1.9E-22 132.4 5.6 64 4-67 14-77 (80)
2 2h1k_A IPF-1, pancreatic and d 99.7 8.3E-18 2.8E-22 125.7 5.4 61 5-65 1-61 (63)
3 1nk2_P Homeobox protein VND; h 99.7 1.6E-17 5.4E-22 129.0 6.6 66 3-68 5-70 (77)
4 2dmu_A Homeobox protein goosec 99.7 1.3E-17 4.5E-22 126.9 6.0 64 4-67 4-67 (70)
5 1ahd_P Antennapedia protein mu 99.7 1.2E-17 4E-22 127.0 5.1 62 7-68 2-63 (68)
6 2cra_A Homeobox protein HOX-B1 99.7 9.9E-18 3.4E-22 127.7 4.7 64 4-67 4-67 (70)
7 2vi6_A Homeobox protein nanog; 99.7 8.3E-18 2.8E-22 125.2 4.0 61 5-65 1-61 (62)
8 2cue_A Paired box protein PAX6 99.7 1.8E-17 6.3E-22 129.4 6.1 65 4-68 4-68 (80)
9 2kt0_A Nanog, homeobox protein 99.7 1.1E-17 3.8E-22 131.4 4.9 64 4-67 19-82 (84)
10 2r5y_A Homeotic protein sex co 99.7 1.3E-17 4.4E-22 132.5 5.2 64 3-66 24-87 (88)
11 2da2_A Alpha-fetoprotein enhan 99.7 1.5E-17 5.2E-22 126.4 5.2 64 4-67 4-67 (70)
12 1fjl_A Paired protein; DNA-bin 99.7 2E-17 6.7E-22 129.4 5.9 65 3-67 14-78 (81)
13 2dms_A Homeobox protein OTX2; 99.7 2.2E-17 7.6E-22 128.8 6.2 64 4-67 4-67 (80)
14 2da3_A Alpha-fetoprotein enhan 99.7 1.2E-17 4E-22 129.8 4.4 64 4-67 14-77 (80)
15 2m0c_A Homeobox protein arista 99.7 2.2E-17 7.5E-22 126.6 5.8 67 2-68 4-70 (75)
16 2l7z_A Homeobox protein HOX-A1 99.7 2.9E-17 1E-21 126.3 6.4 66 2-67 2-67 (73)
17 2dmq_A LIM/homeobox protein LH 99.7 3.2E-17 1.1E-21 127.6 6.6 64 4-67 4-67 (80)
18 2da1_A Alpha-fetoprotein enhan 99.7 1.5E-17 5E-22 126.5 4.5 64 4-67 4-67 (70)
19 2djn_A Homeobox protein DLX-5; 99.7 1.4E-17 4.9E-22 126.9 4.3 64 4-67 4-67 (70)
20 1b8i_A Ultrabithorax, protein 99.7 1.8E-17 6.2E-22 130.0 5.0 64 4-67 17-80 (81)
21 2hdd_A Protein (engrailed home 99.7 2E-17 6.8E-22 122.8 4.9 58 7-64 3-60 (61)
22 2e1o_A Homeobox protein PRH; D 99.7 3.6E-17 1.2E-21 124.7 6.2 64 4-67 4-67 (70)
23 1puf_A HOX-1.7, homeobox prote 99.7 3.3E-17 1.1E-21 127.1 6.1 64 4-67 10-73 (77)
24 3a01_A Homeodomain-containing 99.7 3.3E-17 1.1E-21 131.9 6.2 65 4-68 14-78 (93)
25 1yz8_P Pituitary homeobox 2; D 99.7 1.2E-17 4.3E-22 126.5 3.5 64 5-68 1-64 (68)
26 1zq3_P PRD-4, homeotic bicoid 99.7 5.1E-17 1.7E-21 123.3 6.4 62 7-68 2-63 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.7 4.8E-17 1.6E-21 123.4 6.1 63 6-68 1-63 (68)
28 1bw5_A ISL-1HD, insulin gene e 99.7 2.9E-17 9.9E-22 123.7 4.7 62 6-67 2-63 (66)
29 2da4_A Hypothetical protein DK 99.7 3.2E-17 1.1E-21 127.9 5.0 64 4-67 5-72 (80)
30 1ig7_A Homeotic protein MSX-1; 99.7 5.1E-17 1.7E-21 119.1 5.6 57 8-64 1-57 (58)
31 1jgg_A Segmentation protein EV 99.7 6.2E-17 2.1E-21 119.7 5.3 58 8-65 2-59 (60)
32 1uhs_A HOP, homeodomain only p 99.7 1.5E-16 5.1E-21 121.8 7.1 61 8-68 2-63 (72)
33 3rkq_A Homeobox protein NKX-2. 99.7 9.3E-17 3.2E-21 117.1 5.4 57 7-63 2-58 (58)
34 2hi3_A Homeodomain-only protei 99.6 1.7E-16 5.7E-21 122.0 6.9 62 7-68 2-64 (73)
35 1akh_A Protein (mating-type pr 99.6 5.6E-17 1.9E-21 120.0 4.0 60 4-63 2-61 (61)
36 1wh5_A ZF-HD homeobox family p 99.6 3.3E-17 1.1E-21 128.8 2.8 61 4-64 14-78 (80)
37 3a02_A Homeobox protein arista 99.6 7.5E-17 2.6E-21 119.3 4.3 58 10-67 2-59 (60)
38 2k40_A Homeobox expressed in E 99.6 1.6E-16 5.4E-21 120.0 6.0 61 7-67 1-61 (67)
39 2da5_A Zinc fingers and homeob 99.6 1.1E-16 3.8E-21 123.8 5.3 60 9-68 9-68 (75)
40 2ecc_A Homeobox and leucine zi 99.6 1.8E-16 6.2E-21 124.3 5.9 57 9-65 5-61 (76)
41 1b72_A Protein (homeobox prote 99.6 1.5E-16 5.1E-21 128.6 5.6 63 5-67 32-94 (97)
42 1x2n_A Homeobox protein pknox1 99.6 2.6E-16 8.9E-21 120.6 6.5 64 4-67 4-70 (73)
43 1wh7_A ZF-HD homeobox family p 99.6 4.7E-17 1.6E-21 128.2 2.1 60 4-64 14-78 (80)
44 2ecb_A Zinc fingers and homeob 99.6 2.1E-16 7.2E-21 127.2 5.9 57 11-67 15-71 (89)
45 2dn0_A Zinc fingers and homeob 99.6 1.6E-16 5.5E-21 123.0 4.9 62 7-68 8-69 (76)
46 3a03_A T-cell leukemia homeobo 99.6 1.9E-16 6.4E-21 115.9 4.9 54 12-65 2-55 (56)
47 2ly9_A Zinc fingers and homeob 99.6 3E-16 1E-20 120.4 6.2 63 6-68 5-67 (74)
48 1puf_B PRE-B-cell leukemia tra 99.6 3.2E-16 1.1E-20 120.1 6.2 62 7-68 1-65 (73)
49 2cuf_A FLJ21616 protein; homeo 99.6 3.3E-16 1.1E-20 126.1 5.8 65 4-68 4-83 (95)
50 3nar_A ZHX1, zinc fingers and 99.6 2.9E-16 9.8E-21 126.8 5.1 62 5-66 23-84 (96)
51 1b72_B Protein (PBX1); homeodo 99.6 4E-16 1.4E-20 123.2 5.8 62 7-68 1-65 (87)
52 2dmn_A Homeobox protein TGIF2L 99.6 9.5E-16 3.3E-20 120.9 6.6 64 4-67 4-70 (83)
53 1au7_A Protein PIT-1, GHF-1; c 99.6 5.2E-16 1.8E-20 134.4 4.5 63 3-65 83-145 (146)
54 2dmp_A Zinc fingers and homeob 99.6 1.2E-15 4E-20 122.0 6.2 59 10-68 16-74 (89)
55 1du6_A PBX1, homeobox protein 99.6 2.6E-16 9E-21 117.6 2.2 59 6-64 2-63 (64)
56 2xsd_C POU domain, class 3, tr 99.6 5.4E-16 1.9E-20 136.9 4.3 64 4-67 96-159 (164)
57 1e3o_C Octamer-binding transcr 99.6 6.6E-16 2.3E-20 135.4 4.7 62 4-65 98-159 (160)
58 1mnm_C Protein (MAT alpha-2 tr 99.6 8.4E-16 2.9E-20 121.8 4.6 60 5-64 25-87 (87)
59 1k61_A Mating-type protein alp 99.6 1.2E-15 4.2E-20 112.6 4.9 55 11-65 2-59 (60)
60 1lfb_A Liver transcription fac 99.6 6.8E-16 2.3E-20 126.3 3.3 68 1-68 3-91 (99)
61 3nau_A Zinc fingers and homeob 99.6 1.2E-15 4.1E-20 116.6 4.5 52 14-65 11-62 (66)
62 1le8_B Mating-type protein alp 99.6 1.6E-15 5.6E-20 119.4 5.0 58 8-65 3-63 (83)
63 2da6_A Hepatocyte nuclear fact 99.6 2.3E-15 7.8E-20 124.1 5.9 66 4-69 3-89 (102)
64 2cqx_A LAG1 longevity assuranc 99.6 6.4E-16 2.2E-20 119.2 2.1 60 7-66 8-68 (72)
65 3d1n_I POU domain, class 6, tr 99.6 2.4E-15 8.1E-20 130.5 5.9 61 4-64 90-150 (151)
66 2l9r_A Homeobox protein NKX-3. 99.6 2.6E-15 8.9E-20 115.4 5.0 59 9-67 6-64 (69)
67 3l1p_A POU domain, class 5, tr 99.5 6.4E-15 2.2E-19 128.7 4.5 61 5-65 94-154 (155)
68 1x2m_A LAG1 longevity assuranc 99.5 5.1E-15 1.8E-19 112.5 3.4 50 16-65 9-59 (64)
69 2d5v_A Hepatocyte nuclear fact 99.5 4.8E-15 1.6E-19 129.8 3.6 63 5-67 95-157 (164)
70 1wi3_A DNA-binding protein SAT 99.5 1.6E-14 5.5E-19 111.2 4.7 61 4-64 4-65 (71)
71 2e19_A Transcription factor 8; 99.5 1.3E-14 4.4E-19 109.6 3.7 54 11-64 7-60 (64)
72 3k2a_A Homeobox protein MEIS2; 99.5 1.9E-14 6.6E-19 109.3 4.0 57 11-67 5-61 (67)
73 2lk2_A Homeobox protein TGIF1; 99.4 1.7E-13 5.7E-18 110.4 3.7 58 10-67 11-68 (89)
74 1ic8_A Hepatocyte nuclear fact 99.3 2.1E-13 7.1E-18 123.7 1.0 60 5-64 113-193 (194)
75 1mh3_A Maltose binding-A1 home 99.2 2E-12 6.9E-17 124.0 0.1 55 9-63 367-421 (421)
76 2h8r_A Hepatocyte nuclear fact 99.2 8.9E-12 3.1E-16 115.1 3.6 59 4-62 139-218 (221)
77 2da7_A Zinc finger homeobox pr 99.1 7.1E-11 2.4E-15 91.2 4.1 47 16-62 14-60 (71)
78 2nzz_A Penetratin conjugated G 98.5 3.8E-08 1.3E-12 67.1 1.6 20 49-68 1-20 (37)
79 2ys9_A Homeobox and leucine zi 90.9 0.11 3.6E-06 40.0 2.1 38 20-57 19-56 (70)
80 2elh_A CG11849-PA, LD40883P; s 62.0 9.3 0.00032 28.9 4.3 48 6-58 15-62 (87)
81 3hug_A RNA polymerase sigma fa 52.2 12 0.00041 28.2 3.5 31 37-67 56-86 (92)
82 1hlv_A CENP-B, major centromer 43.3 31 0.0011 27.2 4.8 51 10-63 4-54 (131)
83 2glo_A Brinker CG9653-PA; prot 38.7 19 0.00065 25.0 2.5 23 37-59 28-50 (59)
84 2o8x_A Probable RNA polymerase 33.4 34 0.0011 23.7 3.1 48 14-66 16-63 (70)
85 3lph_A Protein REV; helix-loop 33.0 22 0.00075 27.2 2.1 31 23-67 22-52 (72)
86 2x7l_M HIV REV; nuclear export 30.8 12 0.00042 31.0 0.4 31 23-67 19-49 (115)
87 3c57_A Two component transcrip 29.1 50 0.0017 25.1 3.7 50 12-67 26-75 (95)
88 1tc3_C Protein (TC3 transposas 28.7 38 0.0013 21.1 2.6 21 37-57 24-44 (51)
89 3mzy_A RNA polymerase sigma-H 25.9 23 0.0008 28.0 1.3 32 36-67 126-157 (164)
90 2qtq_A Transcriptional regulat 24.6 30 0.001 28.1 1.8 50 12-62 15-64 (213)
91 1je8_A Nitrate/nitrite respons 24.2 54 0.0018 24.2 3.0 48 12-65 20-67 (82)
92 1s7o_A Hypothetical UPF0122 pr 23.5 69 0.0024 25.5 3.7 48 14-66 23-70 (113)
93 1rp3_A RNA polymerase sigma fa 23.0 62 0.0021 27.3 3.5 31 37-67 206-236 (239)
94 3bru_A Regulatory protein, TET 22.9 32 0.0011 28.3 1.7 46 15-61 32-77 (222)
95 2q24_A Putative TETR family tr 22.9 24 0.00083 28.7 0.9 45 15-61 17-61 (194)
96 1or7_A Sigma-24, RNA polymeras 22.9 64 0.0022 26.5 3.5 31 37-67 159-189 (194)
97 1tty_A Sigma-A, RNA polymerase 22.5 63 0.0022 24.0 3.1 49 15-66 20-70 (87)
98 1p4w_A RCSB; solution structur 22.4 88 0.003 24.3 4.0 49 11-65 32-80 (99)
99 2p7v_B Sigma-70, RNA polymeras 22.4 26 0.00089 24.7 0.8 52 14-66 6-57 (68)
100 1ku3_A Sigma factor SIGA; heli 22.2 76 0.0026 22.5 3.4 47 13-63 10-59 (73)
101 1jko_C HIN recombinase, DNA-in 22.2 26 0.0009 22.4 0.8 23 37-59 24-46 (52)
102 1fse_A GERE; helix-turn-helix 21.0 94 0.0032 21.5 3.6 49 11-65 9-57 (74)
103 2hxo_A Putative TETR-family tr 20.8 70 0.0024 27.8 3.5 55 9-64 11-66 (237)
104 2jpc_A SSRB; DNA binding prote 20.8 35 0.0012 23.1 1.2 28 38-65 17-44 (61)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.71 E-value=5.6e-18 Score=132.40 Aligned_cols=64 Identities=27% Similarity=0.325 Sum_probs=60.3
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..||..|+..|..++||+..+|..||..++|++.||+|||||||+|+||..+
T Consensus 14 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~~ 77 (80)
T 2dmt_A 14 AKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKSGP 77 (80)
T ss_dssp CCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCCCS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcccC
Confidence 4567889999999999999999999999999999999999999999999999999999998754
No 2
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.70 E-value=8.3e-18 Score=125.73 Aligned_cols=61 Identities=28% Similarity=0.467 Sum_probs=56.0
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
+++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||++||||||+|+||.
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 1 GSNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 3578899999999999999999999999999999999999999999999999999999986
No 3
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.70 E-value=1.6e-17 Score=128.96 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=61.4
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 3 INGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 3 ~~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
..+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||+|||||||+|+|+....
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~ 70 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNE 70 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhcc
Confidence 356778899999999999999999999999999999999999999999999999999999987553
No 4
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=1.3e-17 Score=126.89 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=60.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||++||||||+|+|+..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTST
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccCC
Confidence 4567889999999999999999999999999999999999999999999999999999998754
No 5
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.69 E-value=1.2e-17 Score=126.97 Aligned_cols=62 Identities=31% Similarity=0.399 Sum_probs=59.2
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
+||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 57889999999999999999999999999999999999999999999999999999998664
No 6
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=9.9e-18 Score=127.74 Aligned_cols=64 Identities=23% Similarity=0.359 Sum_probs=60.1
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||+|||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~ 67 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKSGP 67 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSSCT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcccCC
Confidence 3567889999999999999999999999999999999999999999999999999999998643
No 7
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.69 E-value=8.3e-18 Score=125.20 Aligned_cols=61 Identities=28% Similarity=0.382 Sum_probs=53.1
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
+++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||++||||||+|+||.
T Consensus 1 g~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 1 GTKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp -------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 4678899999999999999999999999999999999999999999999999999999985
No 8
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.69 E-value=1.8e-17 Score=129.44 Aligned_cols=65 Identities=23% Similarity=0.427 Sum_probs=61.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||+|||||||+|+||..+.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~ 68 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 68 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhh
Confidence 45678899999999999999999999999999999999999999999999999999999998664
No 9
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-17 Score=131.38 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=60.5
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..||..|+..|..++||+..+|..||..+||++.||+|||||||+|+||..+
T Consensus 19 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~k 82 (84)
T 2kt0_A 19 PVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQK 82 (84)
T ss_dssp CSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhh
Confidence 4577889999999999999999999999999999999999999999999999999999998754
No 10
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.69 E-value=1.3e-17 Score=132.55 Aligned_cols=64 Identities=30% Similarity=0.399 Sum_probs=55.7
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 3 INGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 3 ~~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
.+++.||.|+.|+..||..|+..|..++||+..+|..||..+||++.||+|||||||+|+||..
T Consensus 24 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 87 (88)
T 2r5y_A 24 ANGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEH 87 (88)
T ss_dssp -------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhhc
Confidence 4567788999999999999999999999999999999999999999999999999999999864
No 11
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.5e-17 Score=126.42 Aligned_cols=64 Identities=25% Similarity=0.402 Sum_probs=60.5
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..++||+..++..||..++|++.||++||||||+|+||..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKSGP 67 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCCSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhccc
Confidence 4678889999999999999999999999999999999999999999999999999999998644
No 12
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.69 E-value=2e-17 Score=129.44 Aligned_cols=65 Identities=26% Similarity=0.442 Sum_probs=59.5
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 3 INGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 3 ~~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
..+++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||++||||||+|+||+.+
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 35677889999999999999999999999999999999999999999999999999999999754
No 13
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.69 E-value=2.2e-17 Score=128.83 Aligned_cols=64 Identities=20% Similarity=0.335 Sum_probs=60.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..||..|+..|..++||+..+|..||..++|++.||+|||||||+|+|+..+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~ 67 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQ 67 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHH
Confidence 4577889999999999999999999999999999999999999999999999999999999755
No 14
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=129.80 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=60.1
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
..++||.|+.|+..||..|+..|..++||+..+|..||..|+|++.||+|||||||+|+||...
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 77 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKSGP 77 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999998754
No 15
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=126.60 Aligned_cols=67 Identities=28% Similarity=0.455 Sum_probs=62.5
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 2 DINGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 2 d~~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
...+++||.|+.|+..|+..|+..|..++||+..++..||..+||++.||+|||||||+|+||..+.
T Consensus 4 ~~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~r~ 70 (75)
T 2m0c_A 4 SNKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRERF 70 (75)
T ss_dssp CCCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCCC
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHHhh
Confidence 4567788899999999999999999999999999999999999999999999999999999987554
No 16
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.68 E-value=2.9e-17 Score=126.34 Aligned_cols=66 Identities=27% Similarity=0.287 Sum_probs=61.3
Q ss_pred CCCCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 2 DINGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 2 d~~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
....++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||++||||||+|+||...
T Consensus 2 s~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 67 (73)
T 2l7z_A 2 SHMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVIN 67 (73)
T ss_dssp CSSSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSSS
T ss_pred CCCCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHhc
Confidence 345677889999999999999999999999999999999999999999999999999999998744
No 17
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.68 E-value=3.2e-17 Score=127.62 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=60.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||+|||||||+|+||+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999999999999999754
No 18
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.68 E-value=1.5e-17 Score=126.53 Aligned_cols=64 Identities=16% Similarity=0.235 Sum_probs=60.3
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..++||+..++..||..++|++.||++||||||+|+|+..+
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSGP 67 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhcc
Confidence 4567889999999999999999999999999999999999999999999999999999998754
No 19
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=1.4e-17 Score=126.88 Aligned_cols=64 Identities=31% Similarity=0.387 Sum_probs=60.3
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||++||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKSGP 67 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhcccCC
Confidence 4677889999999999999999999999999999999999999999999999999999998643
No 20
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.68 E-value=1.8e-17 Score=130.04 Aligned_cols=64 Identities=33% Similarity=0.446 Sum_probs=54.8
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|+||..+
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 80 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEIQ 80 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC-
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhcc
Confidence 4677889999999999999999999999999999999999999999999999999999998743
No 21
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.68 E-value=2e-17 Score=122.76 Aligned_cols=58 Identities=24% Similarity=0.390 Sum_probs=53.3
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
+||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 5778999999999999999999999999999999999999999999999999999997
No 22
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=3.6e-17 Score=124.66 Aligned_cols=64 Identities=19% Similarity=0.326 Sum_probs=60.0
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
..++||.|++|+..|+..|+..|..++||+..+|..||..++|++.||++||||||+|+|+...
T Consensus 4 ~~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~~ 67 (70)
T 2e1o_A 4 GSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSGP 67 (70)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCCC
Confidence 3467778999999999999999999999999999999999999999999999999999999754
No 23
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.68 E-value=3.3e-17 Score=127.12 Aligned_cols=64 Identities=30% Similarity=0.345 Sum_probs=60.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.++.||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|+|+..+
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 4567789999999999999999999999999999999999999999999999999999999865
No 24
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.68 E-value=3.3e-17 Score=131.88 Aligned_cols=65 Identities=29% Similarity=0.355 Sum_probs=61.2
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|||+....
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 14 PPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 45778899999999999999999999999999999999999999999999999999999998654
No 25
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.68 E-value=1.2e-17 Score=126.52 Aligned_cols=64 Identities=27% Similarity=0.514 Sum_probs=60.6
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
+++||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|+..+.
T Consensus 1 g~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~~ 64 (68)
T 1yz8_P 1 GSQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREEF 64 (68)
T ss_dssp CCSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhhc
Confidence 4678899999999999999999999999999999999999999999999999999999997653
No 26
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.67 E-value=5.1e-17 Score=123.30 Aligned_cols=62 Identities=26% Similarity=0.307 Sum_probs=59.0
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
+||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|+|+..+.
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~~ 63 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 63 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhcc
Confidence 57799999999999999999999999999999999999999999999999999999998654
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=4.8e-17 Score=123.43 Aligned_cols=63 Identities=29% Similarity=0.399 Sum_probs=59.4
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 6 krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
.+||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|+..+.
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~~ 63 (68)
T 1ftt_A 1 MRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAKD 63 (68)
T ss_dssp CCSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhhH
Confidence 367899999999999999999999999999999999999999999999999999999997653
No 28
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.67 E-value=2.9e-17 Score=123.66 Aligned_cols=62 Identities=23% Similarity=0.237 Sum_probs=58.6
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 6 krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
++||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 63 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRSI 63 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHHhh
Confidence 46779999999999999999999999999999999999999999999999999999998643
No 29
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=3.2e-17 Score=127.91 Aligned_cols=64 Identities=14% Similarity=0.147 Sum_probs=60.3
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcC----CCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKN----PYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~n----pYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..+ +||+..+|..||..+||++.||+|||||||+|+|+...
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~~ 72 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMGI 72 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhccC
Confidence 46778899999999999999999999 99999999999999999999999999999999998643
No 30
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.67 E-value=5.1e-17 Score=119.12 Aligned_cols=57 Identities=32% Similarity=0.415 Sum_probs=55.4
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999997
No 31
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.66 E-value=6.2e-17 Score=119.72 Aligned_cols=58 Identities=24% Similarity=0.349 Sum_probs=55.5
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 32
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.5e-16 Score=121.82 Aligned_cols=61 Identities=16% Similarity=0.254 Sum_probs=57.4
Q ss_pred CCCCCcccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 8 RKNATRETTSTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~-npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
.+.|+.|+..|+..|+..|.. ++||+..+|..||..+||++.||++||||||+|+||..+.
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~~ 63 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhccC
Confidence 467899999999999999996 9999999999999999999999999999999999998654
No 33
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.65 E-value=9.3e-17 Score=117.05 Aligned_cols=57 Identities=32% Similarity=0.394 Sum_probs=54.8
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHh
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~K 63 (341)
+||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 567899999999999999999999999999999999999999999999999999986
No 34
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.65 E-value=1.7e-16 Score=121.98 Aligned_cols=62 Identities=15% Similarity=0.245 Sum_probs=58.0
Q ss_pred CCCCCCcccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 7 RRKNATRETTSTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~-npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
.++.|+.|+..|+..|+..|.. ++||+..+|..||..+||++.||++||||||+|+||..+.
T Consensus 2 ~~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~~ 64 (73)
T 2hi3_A 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 64 (73)
T ss_dssp CCSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhccC
Confidence 3568899999999999999995 9999999999999999999999999999999999998654
No 35
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.65 E-value=5.6e-17 Score=120.03 Aligned_cols=60 Identities=22% Similarity=0.196 Sum_probs=48.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHh
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~K 63 (341)
.+++||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 356788999999999999999999999999999999999999999999999999999986
No 36
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.65 E-value=3.3e-17 Score=128.80 Aligned_cols=61 Identities=13% Similarity=0.146 Sum_probs=57.7
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKK----NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~----npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
.+++||.|+.|+..||..|+..|+. ++||+..+|++||..|+|++.||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 3467889999999999999999999 999999999999999999999999999999999886
No 37
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.64 E-value=7.5e-17 Score=119.28 Aligned_cols=58 Identities=22% Similarity=0.361 Sum_probs=50.6
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 10 NATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 10 ~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.|+.|+..|+..|+..|..++||+..+|..||..+||++.||++||||||+|+||..+
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4789999999999999999999999999999999999999999999999999998754
No 38
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.64 E-value=1.6e-16 Score=119.96 Aligned_cols=61 Identities=26% Similarity=0.384 Sum_probs=57.9
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||+|+|+...
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~~ 61 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSHR 61 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSCC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhch
Confidence 4678999999999999999999999999999999999999999999999999999998754
No 39
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.64 E-value=1.1e-16 Score=123.82 Aligned_cols=60 Identities=25% Similarity=0.421 Sum_probs=56.3
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 9 KNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 9 R~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
++|++++..||..|+..|..++||+..+|..||..++|++.||+|||||||+|+|+..+.
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~~~ 68 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEETK 68 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSSCS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhhhc
Confidence 456789999999999999999999999999999999999999999999999999998654
No 40
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.8e-16 Score=124.28 Aligned_cols=57 Identities=19% Similarity=0.312 Sum_probs=54.1
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 9 KNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 9 R~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
+.+.+|+..||..|+..|..++||+..+|++||..|||+++||+|||||||+|+|+.
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 356679999999999999999999999999999999999999999999999999986
No 41
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.64 E-value=1.5e-16 Score=128.64 Aligned_cols=63 Identities=29% Similarity=0.405 Sum_probs=56.4
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
++.||.|+.|+..||..|+..|..++||+..+|..||..++|++.||+|||||||+|+||..+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 456778999999999999999999999999999999999999999999999999999999754
No 42
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=2.6e-16 Score=120.62 Aligned_cols=64 Identities=30% Similarity=0.441 Sum_probs=59.0
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKK---NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~---npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|.. ++||+..+|..||..+||++.||+|||||||+|+|+...
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 70 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGP 70 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhcccccc
Confidence 5677889999999999999999976 999999999999999999999999999999999998743
No 43
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.63 E-value=4.7e-17 Score=128.25 Aligned_cols=60 Identities=12% Similarity=0.099 Sum_probs=56.8
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhc-----CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKK-----NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~-----npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
.+++||.|+.|+..||..|+ .|.. ++||+..+|++||..|+|++.||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678899999999999999 8999 999999999999999999999999999999999986
No 44
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.63 E-value=2.1e-16 Score=127.19 Aligned_cols=57 Identities=18% Similarity=0.260 Sum_probs=53.6
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
+.+++..||..|+..|..++||+..+|.+||..|||+++||+|||||||+|||++.+
T Consensus 15 ~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~~ 71 (89)
T 2ecb_A 15 FKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71 (89)
T ss_dssp CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred hccCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHHH
Confidence 348999999999999999999999999999999999999999999999999998643
No 45
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=1.6e-16 Score=122.95 Aligned_cols=62 Identities=18% Similarity=0.323 Sum_probs=57.7
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
..+.|++|+..||..|+..|..++||+..+|..||..++|++.||++||||||+|+||..+.
T Consensus 8 ~~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~~~ 69 (76)
T 2dn0_A 8 ASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLKGS 69 (76)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCCSS
T ss_pred CCCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhccc
Confidence 34578999999999999999999999999999999999999999999999999999987553
No 46
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.63 E-value=1.9e-16 Score=115.87 Aligned_cols=54 Identities=28% Similarity=0.407 Sum_probs=51.0
Q ss_pred CcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 12 TRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 12 t~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
+.|+..|+..|+..|..++||+..+|..||..+||++.||++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 678999999999999999999999999999999999999999999999999985
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.63 E-value=3e-16 Score=120.39 Aligned_cols=63 Identities=22% Similarity=0.321 Sum_probs=58.8
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 6 krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
..++.|+.|+..|+..|+..|..++||+..+|..||..+||++.||++||||||+|+||.+..
T Consensus 5 ~~~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 67 (74)
T 2ly9_A 5 DSFGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKSN 67 (74)
T ss_dssp CCCCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTCS
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCcC
Confidence 346789999999999999999999999999999999999999999999999999999987553
No 48
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.63 E-value=3.2e-16 Score=120.14 Aligned_cols=62 Identities=31% Similarity=0.405 Sum_probs=57.7
Q ss_pred CCCCCCcccHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 7 RRKNATRETTSTLKAWLNEH---KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F---~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
+||.|+.|+..|+..|+..| ..++||+..+|..||..+||++.||+|||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 65 (73)
T 1puf_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (73)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccc
Confidence 36788999999999999999 999999999999999999999999999999999999987543
No 49
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.62 E-value=3.3e-16 Score=126.14 Aligned_cols=65 Identities=22% Similarity=0.362 Sum_probs=61.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------CCccccccchhhhHHHHhhhhcc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITK---------------MTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lg---------------LsesQVkvWFQNRR~K~KK~~k~ 68 (341)
.+++||.|+.|+..||..|+..|+.++||+..+|+.||..++ |++.||++||||||+|+|++.+.
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~~ 83 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANI 83 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhhc
Confidence 467888999999999999999999999999999999999999 99999999999999999998764
No 50
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.61 E-value=2.9e-16 Score=126.85 Aligned_cols=62 Identities=19% Similarity=0.325 Sum_probs=56.2
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
+..+|.|+.|+..|+..|+..|..++||+..+|..||..++|++.||++||||||+|+||.+
T Consensus 23 ~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~ 84 (96)
T 3nar_A 23 SGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGN 84 (96)
T ss_dssp ----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhc
Confidence 45677899999999999999999999999999999999999999999999999999999863
No 51
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.61 E-value=4e-16 Score=123.22 Aligned_cols=62 Identities=31% Similarity=0.405 Sum_probs=56.8
Q ss_pred CCCCCCcccHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 7 RRKNATRETTSTLKAWLNEH---KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F---~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
+||.|+.|+..|+..|+..| ..++||+..+|..||..+||++.||+|||||||+|+|+....
T Consensus 1 ~rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 1 ARRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp --CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 36789999999999999999 899999999999999999999999999999999999997543
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.60 E-value=9.5e-16 Score=120.95 Aligned_cols=64 Identities=31% Similarity=0.472 Sum_probs=55.5
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKK---NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~---npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
..++||.|+.|+..|+..|+..|.. ++||+..+|..||..++|++.||+|||||+|+|+|+...
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~ 70 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDML 70 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHH
Confidence 3466778888888888877776665 799999999999999999999999999999999998744
No 53
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.59 E-value=5.2e-16 Score=134.43 Aligned_cols=63 Identities=24% Similarity=0.322 Sum_probs=55.8
Q ss_pred CCCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 3 INGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 3 ~~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
..+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||+|||||||+|+||+
T Consensus 83 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 83 ANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 345778899999999999999999999999999999999999999999999999999999985
No 54
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=1.2e-15 Score=121.99 Aligned_cols=59 Identities=20% Similarity=0.373 Sum_probs=54.6
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 10 NATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 10 ~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
++.+++..||..|+..|..++||+..+|+.||..++|++.||+|||||||+|+|+..+.
T Consensus 16 k~k~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~~~ 74 (89)
T 2dmp_A 16 KFKEKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQA 74 (89)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCSC
T ss_pred ccccCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHhHh
Confidence 44569999999999999999999999999999999999999999999999999987553
No 55
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.59 E-value=2.6e-16 Score=117.58 Aligned_cols=59 Identities=31% Similarity=0.423 Sum_probs=55.3
Q ss_pred CCCCCCCcccHHHHHHHHHHH---hcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 6 ARRKNATRETTSTLKAWLNEH---KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 6 krRR~Rt~fS~~QL~~Le~~F---~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
..+|.|+.|+..|+..|+..| ..++||+..+|..||..+||++.||++||||+|+|+||
T Consensus 2 ~~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 2 SGHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 456788999999999999999 99999999999999999999999999999999999986
No 56
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.58 E-value=5.4e-16 Score=136.87 Aligned_cols=64 Identities=27% Similarity=0.323 Sum_probs=52.5
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||+|||||||+|+||..+
T Consensus 96 ~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~ 159 (164)
T 2xsd_C 96 QGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMTP 159 (164)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSCC
T ss_pred cccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhccC
Confidence 4677889999999999999999999999999999999999999999999999999999999754
No 57
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.58 E-value=6.6e-16 Score=135.44 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=55.0
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
..++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|+||.
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35778899999999999999999999999999999999999999999999999999999985
No 58
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.58 E-value=8.4e-16 Score=121.79 Aligned_cols=60 Identities=23% Similarity=0.296 Sum_probs=56.4
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKK---NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~---npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
.+++|.|+.|+..|+..|+..|.. ++||+..+|..||..+||++.||++||||||+|+|.
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k~ 87 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 87 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccC
Confidence 456678999999999999999999 999999999999999999999999999999999983
No 59
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.58 E-value=1.2e-15 Score=112.59 Aligned_cols=55 Identities=25% Similarity=0.300 Sum_probs=52.6
Q ss_pred CCcccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 11 ATRETTSTLKAWLNEHKK---NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~---npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
+++|+..|+..|+..|.. ++||+..+|..||..+||++.||++||||||+|+|+.
T Consensus 2 r~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk~ 59 (60)
T 1k61_A 2 GHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59 (60)
T ss_dssp CCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred cCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHcccccC
Confidence 578999999999999999 9999999999999999999999999999999999974
No 60
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.57 E-value=6.8e-16 Score=126.31 Aligned_cols=68 Identities=22% Similarity=0.314 Sum_probs=54.0
Q ss_pred CCCCCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHH------------------hC---CCccccccchhhhH
Q psy5913 1 MDINGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAII------------------TK---MTLTQVSTWFANAR 59 (341)
Q Consensus 1 ~d~~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~------------------lg---LsesQVkvWFQNRR 59 (341)
|+..+++||.|+.|+..||..|+..|..++||+..+|++||.. +| |++.||+|||||||
T Consensus 3 ~~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 3 IDPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ----------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 3556788899999999999999999999999999999999999 88 99999999999999
Q ss_pred HHHhhhhcc
Q psy5913 60 RRLKKENKM 68 (341)
Q Consensus 60 ~K~KK~~k~ 68 (341)
+|+|++.+.
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 998876543
No 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.57 E-value=1.2e-15 Score=116.62 Aligned_cols=52 Identities=17% Similarity=0.397 Sum_probs=50.0
Q ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 14 fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
.+..||..|+..|..++||+..+|.+||..|||+++||++||||||+|||+-
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 4789999999999999999999999999999999999999999999999975
No 62
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.56 E-value=1.6e-15 Score=119.36 Aligned_cols=58 Identities=22% Similarity=0.223 Sum_probs=53.1
Q ss_pred CCCCCcccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 8 RKNATRETTSTLKAWLNEHKK---NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~---npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
++.+++|+..|+..|+..|.. ++||+..+|..||..+||++.||+|||||||+|+|+.
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~ 63 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTI 63 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHcccccc
Confidence 445666999999999999999 9999999999999999999999999999999999986
No 63
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=2.3e-15 Score=124.06 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=61.6
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHh---------------------CCCccccccchhhhHHHH
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIIT---------------------KMTLTQVSTWFANARRRL 62 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~l---------------------gLsesQVkvWFQNRR~K~ 62 (341)
.+++||.|+.|+..|+..|+..|+.++||+..+|++||..+ .|++.+|+|||||||+|+
T Consensus 3 ~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k~ 82 (102)
T 2da6_A 3 SGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 82 (102)
T ss_dssp TCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHHH
Confidence 46788899999999999999999999999999999999999 799999999999999999
Q ss_pred hhhhccc
Q psy5913 63 KKENKMT 69 (341)
Q Consensus 63 KK~~k~~ 69 (341)
|++.+..
T Consensus 83 kr~~~~~ 89 (102)
T 2da6_A 83 AFRQKLA 89 (102)
T ss_dssp HHHHHHH
T ss_pred HHhhHhh
Confidence 9987653
No 64
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.56 E-value=6.4e-16 Score=119.21 Aligned_cols=60 Identities=13% Similarity=0.202 Sum_probs=54.1
Q ss_pred CCCCCCcccHHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 7 RRKNATRETTSTLKAWLNEH-KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F-~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
..+.+.+++..|+..||..| ..++||+..+|..||..++|++.||+|||||||+|+|+..
T Consensus 8 g~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~~~ 68 (72)
T 2cqx_A 8 GIKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKPSG 68 (72)
T ss_dssp CCCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSSCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCCCC
Confidence 34456667778899999999 9999999999999999999999999999999999999753
No 65
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.56 E-value=2.4e-15 Score=130.52 Aligned_cols=61 Identities=31% Similarity=0.395 Sum_probs=58.3
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 3567889999999999999999999999999999999999999999999999999999997
No 66
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.55 E-value=2.6e-15 Score=115.37 Aligned_cols=59 Identities=24% Similarity=0.338 Sum_probs=54.6
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 9 KNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 9 R~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.+....+..|+..|+..|..++||+..+|..||..++|+++||+|||||||+|+||...
T Consensus 6 ~~~~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~~ 64 (69)
T 2l9r_A 6 HHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQL 64 (69)
T ss_dssp CSCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSSS
T ss_pred CCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhhh
Confidence 35567899999999999999999999999999999999999999999999999998644
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.51 E-value=6.4e-15 Score=128.66 Aligned_cols=61 Identities=21% Similarity=0.272 Sum_probs=57.9
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
+++||.|+.|+..|+..|+..|..++||+..+|..||..++|++.||+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 4678899999999999999999999999999999999999999999999999999999974
No 68
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.51 E-value=5.1e-15 Score=112.47 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=46.3
Q ss_pred HHHHHHHHHHH-hcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 16 TSTLKAWLNEH-KKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 16 ~~QL~~Le~~F-~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
..|+..||..| ..++||+..+|..||.+|+|+++||++||||||+|+|+.
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~~ 59 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKPS 59 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCCS
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCCC
Confidence 34789999999 679999999999999999999999999999999999874
No 69
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.51 E-value=4.8e-15 Score=129.80 Aligned_cols=63 Identities=25% Similarity=0.254 Sum_probs=54.9
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.++||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|+|+...
T Consensus 95 ~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~~ 157 (164)
T 2d5v_A 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKWL 157 (164)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC--
T ss_pred CCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccCC
Confidence 356889999999999999999999999999999999999999999999999999999998643
No 70
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.49 E-value=1.6e-14 Score=111.20 Aligned_cols=61 Identities=15% Similarity=0.210 Sum_probs=57.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~-npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
++++||.||.++.+||..|+..|+. ++||+..+|+.||.+|||++++|+|||||+|--.|.
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~~~~ 65 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCS
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceeeecC
Confidence 5678899999999999999999999 999999999999999999999999999999987654
No 71
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=1.3e-14 Score=109.59 Aligned_cols=54 Identities=17% Similarity=0.159 Sum_probs=49.9
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
....+..|+..|+..|..++||+..+|..||..++|+++||+|||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 344568999999999999999999999999999999999999999999998765
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.47 E-value=1.9e-14 Score=109.26 Aligned_cols=57 Identities=39% Similarity=0.664 Sum_probs=45.7
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
++.....+|+.|+..|..++||+..+|..||..+||++.||++||||+|+|+||...
T Consensus 5 f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 5 FPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp -CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 344444455555555559999999999999999999999999999999999998744
No 73
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.38 E-value=1.7e-13 Score=110.42 Aligned_cols=58 Identities=40% Similarity=0.694 Sum_probs=53.4
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 10 NATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 10 ~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
..+..+..+|+.|+..+..++||+..+|..||..|||++.||++||||+|+|+|+...
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 4567788999999999999999999999999999999999999999999999998743
No 74
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.32 E-value=2.1e-13 Score=123.73 Aligned_cols=60 Identities=22% Similarity=0.300 Sum_probs=53.8
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCccccccchhhhHHHHh
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITK---------------------MTLTQVSTWFANARRRLK 63 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lg---------------------LsesQVkvWFQNRR~K~K 63 (341)
+++||.|+.|+..|+..|+..|..++||+..+|+.||..++ |++.||+|||||||+|+|
T Consensus 113 ~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~~k 192 (194)
T 1ic8_A 113 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEA 192 (194)
T ss_dssp ----CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHHCC
T ss_pred ccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhhhh
Confidence 56788999999999999999999999999999999999999 999999999999999987
Q ss_pred h
Q psy5913 64 K 64 (341)
Q Consensus 64 K 64 (341)
.
T Consensus 193 ~ 193 (194)
T 1ic8_A 193 F 193 (194)
T ss_dssp -
T ss_pred c
Confidence 4
No 75
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.18 E-value=2e-12 Score=124.01 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=51.5
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHh
Q psy5913 9 KNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (341)
Q Consensus 9 R~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~K 63 (341)
+.++.+...|+..|+..|+.++||+..+|.+||.+++|+++||+|||||||+|+|
T Consensus 367 ~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 367 AAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 3456788999999999999999999999999999999999999999999999976
No 76
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.17 E-value=8.9e-12 Score=115.06 Aligned_cols=59 Identities=24% Similarity=0.328 Sum_probs=52.9
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCccccccchhhhHHHH
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITK---------------------MTLTQVSTWFANARRRL 62 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lg---------------------LsesQVkvWFQNRR~K~ 62 (341)
.+++||.|+.|+..|+..|+..|..++||+..+|+.||..++ |++.||+|||||||++.
T Consensus 139 ~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR~~~ 218 (221)
T 2h8r_A 139 NKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKEE 218 (221)
T ss_dssp ---CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHHTTC
T ss_pred cCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhhhhh
Confidence 356788999999999999999999999999999999999987 89999999999999763
No 77
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.1e-11 Score=91.21 Aligned_cols=47 Identities=15% Similarity=0.215 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHH
Q psy5913 16 TSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62 (341)
Q Consensus 16 ~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~ 62 (341)
..||..|+..|.+|++|+..++..||..+||.++.|++||||||.+.
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~~ 60 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVYQ 60 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhccccc
Confidence 57899999999999999999999999999999999999999999743
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.47 E-value=3.8e-08 Score=67.12 Aligned_cols=20 Identities=35% Similarity=0.557 Sum_probs=17.9
Q ss_pred cccccchhhhHHHHhhhhcc
Q psy5913 49 TQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 49 sQVkvWFQNRR~K~KK~~k~ 68 (341)
+||+|||||||+||||....
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 59999999999999998664
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=90.86 E-value=0.11 Score=39.97 Aligned_cols=38 Identities=13% Similarity=0.209 Sum_probs=33.1
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhh
Q psy5913 20 KAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFAN 57 (341)
Q Consensus 20 ~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQN 57 (341)
+.|...|...+.+....-..|+.+++|+..||+.||..
T Consensus 19 e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 19 QPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp HHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 34566678888999999999999999999999999974
No 80
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=61.97 E-value=9.3 Score=28.87 Aligned_cols=48 Identities=10% Similarity=0.068 Sum_probs=31.5
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhh
Q psy5913 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANA 58 (341)
Q Consensus 6 krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNR 58 (341)
++|+.+..++..+.......+... + + ...+|+.+|++...|..|....
T Consensus 15 ~~~~~~~~ys~e~k~~~v~~~~~g-~-s---~~~iA~~~gIs~sTl~rW~k~~ 62 (87)
T 2elh_A 15 KGKRPLRSLTPRDKIHAIQRIHDG-E-S---KASVARDIGVPESTLRGWCKNE 62 (87)
T ss_dssp CCSSCCSSCCHHHHHHHHHHHHHT-C-C---HHHHHHHHTCCHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHCC-C-C---HHHHHHHHCcCHHHHHHHHHHH
Confidence 344456677776655555555422 1 2 4478999999999999997543
No 81
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=52.16 E-value=12 Score=28.23 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=27.2
Q ss_pred HHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 37 KIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 37 R~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
-.++|..+|++...|+++....|.|+|+..+
T Consensus 56 ~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 86 (92)
T 3hug_A 56 TAQIATDLGIAEGTVKSRLHYAVRALRLTLQ 86 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999999999999988754
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=43.29 E-value=31 Score=27.15 Aligned_cols=51 Identities=22% Similarity=0.135 Sum_probs=35.3
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHh
Q psy5913 10 NATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (341)
Q Consensus 10 ~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~K 63 (341)
.|..++.++..++...+..+..... ..+|+.+|++...|..|..+++....
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~~---~~~A~~~gvs~stl~~~~~~~~~~~~ 54 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLRK---GEIARRFNIPPSTLSTILKNKRAILA 54 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSCH---HHHHHHHTCCHHHHHHHHHTHHHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCcH---HHHHHHhCCCHHHHHHHHhchhhhcc
Confidence 3455666666556555555555442 36899999999999999988776443
No 83
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=38.66 E-value=19 Score=25.02 Aligned_cols=23 Identities=13% Similarity=0.202 Sum_probs=19.0
Q ss_pred HHHHHHHhCCCccccccchhhhH
Q psy5913 37 KIMLAIITKMTLTQVSTWFANAR 59 (341)
Q Consensus 37 R~~LA~~lgLsesQVkvWFQNRR 59 (341)
...+|..+|++..+|..|....+
T Consensus 28 ~~~vA~~~gIs~~tl~~W~~~~~ 50 (59)
T 2glo_A 28 QRATARKYNIHRRQIQKWLQCES 50 (59)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHH
Confidence 45789999999999999976443
No 84
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=33.42 E-value=34 Score=23.67 Aligned_cols=48 Identities=19% Similarity=0.080 Sum_probs=32.9
Q ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 14 fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
.+..+...+...|...- .-.++|..+|++...|+.+....|.+.|+..
T Consensus 16 L~~~~r~il~l~~~~g~-----s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l 63 (70)
T 2o8x_A 16 LTTDQREALLLTQLLGL-----SYADAAAVCGCPVGTIRSRVARARDALLADA 63 (70)
T ss_dssp SCHHHHHHHHHHHTSCC-----CHHHHHHHHTSCHHHHHHHHHHHHHHHHC--
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHh
Confidence 34555555555443331 2457899999999999999998888888653
No 85
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=32.99 E-value=22 Score=27.22 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=20.8
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 23 LNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 23 e~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
...|+.||||...-... |. .|||.||++.+.
T Consensus 22 kiLyQSNP~P~p~GTrq-aR-------------RNRRRRWR~RQr 52 (72)
T 3lph_A 22 KFLYQSNPPPNPEGTRQ-AR-------------RNRRRRWRERQR 52 (72)
T ss_dssp HHHHHTCCCCCCCSCHH-HH-------------HHHHHHHHHHHH
T ss_pred HHHHccCCCCCCCCchH-HH-------------HHHHHHHHHHHH
Confidence 33468899998654333 21 589999987643
No 86
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=30.79 E-value=12 Score=30.96 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=20.7
Q ss_pred HHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 23 LNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 23 e~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
...|+.||||...-... | -.|||+|||+.+.
T Consensus 19 kiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQr 49 (115)
T 2x7l_M 19 KFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQR 49 (115)
T ss_dssp HHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHHH
T ss_pred HHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHHH
Confidence 33468899998643222 1 2699999998754
No 87
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=29.07 E-value=50 Score=25.09 Aligned_cols=50 Identities=10% Similarity=-0.045 Sum_probs=35.1
Q ss_pred CcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 12 TRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 12 t~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
...+..+.+.+...++.. .-.++|..++++...|+.+..+-+.|++....
T Consensus 26 ~~Lt~~e~~vl~l~~~g~------s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGL------TNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -CCCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred hcCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 345666666665543322 23578999999999999999988888876544
No 88
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=28.66 E-value=38 Score=21.11 Aligned_cols=21 Identities=0% Similarity=-0.024 Sum_probs=17.5
Q ss_pred HHHHHHHhCCCccccccchhh
Q psy5913 37 KIMLAIITKMTLTQVSTWFAN 57 (341)
Q Consensus 37 R~~LA~~lgLsesQVkvWFQN 57 (341)
..++|+.+|++...|..|...
T Consensus 24 ~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 24 LHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp HHHHHHHHTCCHHHHHHHHHC
T ss_pred HHHHHHHHCcCHHHHHHHHhh
Confidence 457899999999999998753
No 89
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=25.89 E-value=23 Score=28.01 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=27.7
Q ss_pred HHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 36 EKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 36 eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
.-.++|..+|++...|+.+....|.|+|+..+
T Consensus 126 s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 126 SYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34578999999999999999999999988754
No 90
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=24.59 E-value=30 Score=28.08 Aligned_cols=50 Identities=14% Similarity=0.076 Sum_probs=38.1
Q ss_pred CcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHH
Q psy5913 12 TRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62 (341)
Q Consensus 12 t~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~ 62 (341)
...-..++......|....|-.... ..+|+..|++..-|-..|.++..=+
T Consensus 15 ~~~r~~Il~aa~~lf~~~G~~~~t~-~~Ia~~agvs~~t~Y~~F~sK~~L~ 64 (213)
T 2qtq_A 15 PGARDLLLQTASNIMREGDVVDISL-SELSLRSGLNSALVKYYFGNKAGLL 64 (213)
T ss_dssp TTHHHHHHHHHHHHHHHHTSSCCCH-HHHHHHHCCCHHHHHHHHSSHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCcccccH-HHHHHHhCCChhhHhHhcCCHHHHH
Confidence 3444666788888888888866553 4569999999999999999985543
No 91
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=24.16 E-value=54 Score=24.18 Aligned_cols=48 Identities=13% Similarity=0.043 Sum_probs=34.0
Q ss_pred CcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 12 TRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 12 t~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
...+..+.+.+...+ ..+ .-.++|..++++...|+.+..+-+.|++..
T Consensus 20 ~~Lt~~e~~vl~l~~--~g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 67 (82)
T 1je8_A 20 NQLTPRERDILKLIA--QGL----PNKMIARRLDITESTVKVHVKHMLKKMKLK 67 (82)
T ss_dssp GGSCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHTTCS
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCC
Confidence 445666666665532 221 345789999999999999998888887654
No 92
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=23.49 E-value=69 Score=25.49 Aligned_cols=48 Identities=8% Similarity=-0.116 Sum_probs=34.2
Q ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 14 fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
.+..+...+...|...- .-.++|..+|++...|+.|....|.+.|+..
T Consensus 23 L~~~~r~vl~l~y~~g~-----s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 23 LTDKQMNYIELYYADDY-----SLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp SCHHHHHHHHHHHHTCC-----CHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcCC-----CHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 34455555554443332 2457899999999999999999999988764
No 93
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=23.02 E-value=62 Score=27.30 Aligned_cols=31 Identities=26% Similarity=0.220 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 37 KIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 37 R~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
-.++|..+|++...|+.+....|.|+|+..+
T Consensus 206 ~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~ 236 (239)
T 1rp3_A 206 AKEVAKILETSVSRVSQLKAKALERLREMLS 236 (239)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence 4467999999999999999999999988654
No 94
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=22.94 E-value=32 Score=28.25 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=36.2
Q ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHH
Q psy5913 15 TTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (341)
Q Consensus 15 S~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K 61 (341)
...+|......|....|-.... ..+|+..|++..-|-..|.|+-.=
T Consensus 32 r~~Il~aA~~l~~~~G~~~~t~-~~IA~~aGvs~~t~Y~~F~sK~~L 77 (222)
T 3bru_A 32 HQSLIRAGLEHLTEKGYSSVGV-DEILKAARVPKGSFYHYFRNKADF 77 (222)
T ss_dssp HHHHHHHHHHHHHHSCTTTCCH-HHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHHHHHHHHcCCCcCcH-HHHHHHhCCCcchhhhhCCCHHHH
Confidence 3556677788899988866543 467999999999999999998543
No 95
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=22.90 E-value=24 Score=28.70 Aligned_cols=45 Identities=9% Similarity=-0.037 Sum_probs=36.7
Q ss_pred cHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHH
Q psy5913 15 TTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (341)
Q Consensus 15 S~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K 61 (341)
...+|..-...|....| . ..-..+|+..|++..-|...|.|+-.=
T Consensus 17 r~~Il~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L 61 (194)
T 2q24_A 17 RDKILAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREAL 61 (194)
T ss_dssp HHHHHHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHH
T ss_pred HHHHHHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHH
Confidence 35677778888998888 4 556788999999999999999998543
No 96
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=22.89 E-value=64 Score=26.46 Aligned_cols=31 Identities=16% Similarity=0.163 Sum_probs=26.8
Q ss_pred HHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 37 KIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 37 R~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
-.++|..+|++...|+++....|.|+|+..+
T Consensus 159 ~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l~ 189 (194)
T 1or7_A 159 YEEIAAIMDCPVGTVRSRIFRAREAIDNKVQ 189 (194)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 3468999999999999999999999988654
No 97
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=22.55 E-value=63 Score=23.96 Aligned_cols=49 Identities=8% Similarity=-0.069 Sum_probs=33.7
Q ss_pred cHHHHHHHHHHHhcC--CCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 15 TTSTLKAWLNEHKKN--PYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 15 S~~QL~~Le~~F~~n--pYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
+..+...+...|... .-. .-.++|..+|++...|+.+....+.|.|+..
T Consensus 20 ~~~er~vl~l~~~l~~~~~~---s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l 70 (87)
T 1tty_A 20 SPREAMVLRMRYGLLDGKPK---TLEEVGQYFNVTRERIRQIEVKALRKLRHPS 70 (87)
T ss_dssp CHHHHHHHHHHHTTTTSSCC---CHHHHHHHHTCCHHHHHHHHHHHHHHHBTTB
T ss_pred CHHHHHHHHHHHccCCCCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 455555666555411 111 2446899999999999999998888888653
No 98
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=22.44 E-value=88 Score=24.30 Aligned_cols=49 Identities=10% Similarity=-0.049 Sum_probs=34.7
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
....+..+.+.|...++-.. -.++|..+++++..|+.+..+-+.|+.-.
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~s------~~EIA~~L~iS~~TV~~~l~ri~~KLgv~ 80 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGFL------VTEIAKKLNRSIKTISSQKKSAMMKLGVD 80 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTCC------HHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred cCCCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 34566677666655443222 36789999999999999998888777543
No 99
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=22.44 E-value=26 Score=24.73 Aligned_cols=52 Identities=13% Similarity=-0.015 Sum_probs=34.0
Q ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 14 fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
.+..+.+.+...|..+.+-. ..-.++|..+|++...|+.+....+.|.|+..
T Consensus 6 L~~~er~il~l~~~l~~~~g-~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~ 57 (68)
T 2p7v_B 6 LTAREAKVLRMRFGIDMNTD-YTLEEVGKQFDVTRERIRQIEAKALRKLRHPS 57 (68)
T ss_dssp CCHHHHHHHHHHTTTTSSSC-CCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCC
T ss_pred CCHHHHHHHHHHHccCCCCC-CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 34555566665552211111 12356899999999999999888888887653
No 100
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=22.15 E-value=76 Score=22.51 Aligned_cols=47 Identities=11% Similarity=-0.023 Sum_probs=34.1
Q ss_pred cccHHHHHHHHHHHhc---CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHh
Q psy5913 13 RETTSTLKAWLNEHKK---NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (341)
Q Consensus 13 ~fS~~QL~~Le~~F~~---npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~K 63 (341)
..+..+...+...|.. .. . .-.++|..+|++...|+.|....+.|.+
T Consensus 10 ~L~~~er~il~l~~~l~~~~~-~---s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDGRE-H---TLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTSSC-C---CHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccCCC-C---CHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 3455666666666641 11 1 2347899999999999999999998888
No 101
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=22.15 E-value=26 Score=22.42 Aligned_cols=23 Identities=22% Similarity=0.397 Sum_probs=18.7
Q ss_pred HHHHHHHhCCCccccccchhhhH
Q psy5913 37 KIMLAIITKMTLTQVSTWFANAR 59 (341)
Q Consensus 37 R~~LA~~lgLsesQVkvWFQNRR 59 (341)
...+|..+|++...|..|+....
T Consensus 24 ~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 24 RQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp HHHHHHTTSCCHHHHHHHSCTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHcc
Confidence 45789999999999999987543
No 102
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=20.96 E-value=94 Score=21.51 Aligned_cols=49 Identities=12% Similarity=-0.014 Sum_probs=34.4
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
....+..+.+.+.. + ...+ .-.++|..+|++...|..++..-+.|.+..
T Consensus 9 ~~~L~~~e~~il~~-~-~~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 9 KPLLTKREREVFEL-L-VQDK----TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCHHHHHHHHH-H-TTTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHH-H-HcCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 34566666666655 3 2332 235789999999999999998888777654
No 103
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=20.80 E-value=70 Score=27.78 Aligned_cols=55 Identities=7% Similarity=-0.167 Sum_probs=38.2
Q ss_pred CCCCccc-HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 9 KNATRET-TSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 9 R~Rt~fS-~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
+.+...+ ..++..-...|....|-.... ..||+.+|++..-|...|.|+-.=+..
T Consensus 11 ~~~~~~~r~~Il~aA~~l~~~~G~~~~s~-~~IA~~aGvs~~tlY~hF~~K~~Ll~~ 66 (237)
T 2hxo_A 11 RRQEPLSRERIVGAAVELLDTVGERGLTF-RALAERLATGPGAIYWHITGKAELLGA 66 (237)
T ss_dssp -----CCHHHHHHHHHHHHHHTTTTTCCH-HHHHHHHTSCGGGGGGTCCCHHHHHHH
T ss_pred CCCCccCHHHHHHHHHHHHHhcCcccCCH-HHHHHHHCCChHHHHHhcCCHHHHHHH
Confidence 3344444 455677777788888776554 456999999999999999998665543
No 104
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=20.76 E-value=35 Score=23.13 Aligned_cols=28 Identities=18% Similarity=0.169 Sum_probs=24.2
Q ss_pred HHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 38 IMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 38 ~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
.++|..++++...|+.+..+-+.|++..
T Consensus 17 ~eIA~~l~is~~tV~~~~~~~~~kl~~~ 44 (61)
T 2jpc_A 17 HGISEKLHISIKTVETHRMNMMRKLQVH 44 (61)
T ss_dssp HHHHHHTCSCHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHCCC
Confidence 4689999999999999999888887754
Done!