Query psy5913
Match_columns 341
No_of_seqs 212 out of 1267
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 21:39:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5913.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/5913hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2craa1 a.4.1.1 (A:7-64) Homeo 99.7 1E-18 7.4E-23 128.6 4.4 58 7-64 1-58 (58)
2 d1ig7a_ a.4.1.1 (A:) Msx-1 hom 99.7 2.5E-18 1.8E-22 126.1 5.6 57 8-64 1-57 (58)
3 d1zq3p1 a.4.1.1 (P:2-68) Homeo 99.7 3.1E-18 2.2E-22 129.2 6.1 61 8-68 2-62 (67)
4 d1pufa_ a.4.1.1 (A:) Homeobox 99.7 4E-18 2.9E-22 131.9 5.8 64 5-68 11-74 (77)
5 d1fjla_ a.4.1.1 (A:) Paired pr 99.7 4.7E-18 3.4E-22 127.4 5.9 62 6-67 1-62 (65)
6 d2e1oa1 a.4.1.1 (A:8-64) Homeo 99.7 4.9E-18 3.5E-22 124.3 5.5 57 8-64 1-57 (57)
7 d1jgga_ a.4.1.1 (A:) Even-skip 99.7 5.3E-18 3.9E-22 124.1 5.3 57 9-65 1-57 (57)
8 d9anta_ a.4.1.1 (A:) Antennape 99.7 4.9E-18 3.6E-22 124.2 5.1 55 11-65 1-55 (56)
9 d1ftta_ a.4.1.1 (A:) Thyroid t 99.7 1E-17 7.3E-22 126.7 6.2 61 7-67 2-62 (68)
10 d2cuea1 a.4.1.1 (A:7-74) Paire 99.7 1.9E-17 1.4E-21 125.2 5.7 62 7-68 1-62 (68)
11 d1b72a_ a.4.1.1 (A:) Homeobox 99.7 1.8E-17 1.3E-21 131.2 5.5 63 5-67 25-87 (88)
12 d1vnda_ a.4.1.1 (A:) VND/NK-2 99.7 5.4E-18 3.9E-22 131.1 2.2 64 4-67 6-69 (77)
13 d1uhsa_ a.4.1.1 (A:) Homeodoma 99.7 4E-17 2.9E-21 124.9 7.1 62 7-68 1-63 (72)
14 d1p7ia_ a.4.1.1 (A:) Engrailed 99.7 1.5E-17 1.1E-21 119.8 4.2 53 9-61 1-53 (53)
15 d1yz8p1 a.4.1.1 (P:1-60) Pitui 99.6 2.1E-17 1.5E-21 121.8 3.0 58 8-65 2-59 (60)
16 d1ocpa_ a.4.1.1 (A:) Oct-3 POU 99.6 3.8E-17 2.8E-21 123.2 3.8 62 4-65 5-66 (67)
17 d1bw5a_ a.4.1.1 (A:) Insulin g 99.6 1.2E-16 8.9E-21 120.0 4.7 61 6-66 2-62 (66)
18 d2cufa1 a.4.1.1 (A:8-89) Homeo 99.6 2.1E-16 1.5E-20 123.3 5.6 62 8-69 1-77 (82)
19 d1au7a1 a.4.1.1 (A:103-160) Pi 99.6 1.5E-16 1.1E-20 116.5 4.5 57 9-65 1-57 (58)
20 d1wi3a_ a.4.1.1 (A:) DNA-bindi 99.6 2.6E-16 1.9E-20 119.4 4.3 61 5-65 5-66 (71)
21 d1e3oc1 a.4.1.1 (C:104-160) Oc 99.6 5.6E-16 4.1E-20 113.2 4.7 56 10-65 1-56 (57)
22 d1le8a_ a.4.1.1 (A:) Mating ty 99.6 4.5E-16 3.3E-20 112.1 3.8 53 11-63 1-53 (53)
23 d2ecba1 a.4.1.1 (A:8-83) Zinc 99.6 2E-15 1.5E-19 115.9 6.8 54 14-67 11-64 (76)
24 d1pufb_ a.4.1.1 (B:) pbx1 {Hum 99.5 4.9E-15 3.6E-19 112.8 6.3 59 8-66 2-63 (73)
25 d1wh7a_ a.4.1.1 (A:) ZF-HD hom 99.5 1.2E-15 8.6E-20 118.5 2.3 61 4-64 14-78 (80)
26 d2ecca1 a.4.1.1 (A:1-76) Homeo 99.5 5.8E-15 4.2E-19 113.3 5.9 57 9-65 5-61 (76)
27 d1s7ea1 a.4.1.1 (A:103-152) He 99.5 3.8E-15 2.8E-19 105.6 2.4 50 10-59 1-50 (50)
28 d1k61a_ a.4.1.1 (A:) mat alpha 99.5 1.6E-14 1.1E-18 106.3 4.8 54 11-64 5-58 (60)
29 d1x2na1 a.4.1.1 (A:6-67) Homeo 99.4 5E-14 3.7E-18 104.3 5.3 55 10-64 8-62 (62)
30 d1x2ma1 a.4.1.1 (A:8-59) Lag1 99.4 1.8E-14 1.3E-18 103.3 2.4 49 16-64 2-51 (52)
31 d1lfba_ a.4.1.1 (A:) Hepatocyt 99.4 2.2E-14 1.6E-18 110.9 2.9 56 11-66 1-77 (78)
32 d2cqxa1 a.4.1.1 (A:8-66) LAG1 99.3 1.3E-13 9.3E-18 101.2 2.0 54 10-63 4-58 (59)
33 d1hlva1 a.4.1.7 (A:1-66) DNA-b 70.8 2.3 0.00017 30.2 4.2 47 13-62 7-53 (66)
34 d1or7a1 a.4.13.2 (A:120-187) S 41.9 11 0.00078 25.5 3.4 30 37-66 37-66 (68)
35 d1rp3a2 a.4.13.2 (A:164-234) S 37.1 14 0.001 24.7 3.4 45 16-65 24-68 (71)
36 d1ijwc_ a.4.1.2 (C:) HIN recom 32.7 16 0.0012 23.7 3.0 41 11-56 3-43 (47)
No 1
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.72 E-value=1e-18 Score=128.57 Aligned_cols=58 Identities=26% Similarity=0.385 Sum_probs=55.4
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
+||.|+.|+..|+..|+..|..++||+..+|+.||..+||++.||+|||||||+|+||
T Consensus 1 Grr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNrR~k~kk 58 (58)
T d2craa1 1 GRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58 (58)
T ss_dssp CCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHcCCCHHHeeecccchhhhccC
Confidence 3667899999999999999999999999999999999999999999999999999986
No 2
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.71 E-value=2.5e-18 Score=126.06 Aligned_cols=57 Identities=32% Similarity=0.415 Sum_probs=55.4
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
||.|+.|+..|+..|+..|..++||+..+|..||..+||++.||+|||||+|+|+||
T Consensus 1 rr~Rt~ft~~Ql~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr 57 (58)
T d1ig7a_ 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhheeecCcchHhHhcc
Confidence 568999999999999999999999999999999999999999999999999999997
No 3
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.71 E-value=3.1e-18 Score=129.20 Aligned_cols=61 Identities=26% Similarity=0.317 Sum_probs=57.7
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
||.|+.|+..||..|+..|..++||+..+|..||..+||++.||+|||||||+|+|+....
T Consensus 2 rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFqNrR~k~kk~~~~ 62 (67)
T d1zq3p1 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSDQ 62 (67)
T ss_dssp SCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCcCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccceeeccccHHHhHhhhhhh
Confidence 5678999999999999999999999999999999999999999999999999999987553
No 4
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.70 E-value=4e-18 Score=131.95 Aligned_cols=64 Identities=30% Similarity=0.331 Sum_probs=59.8
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
+.+||.|++|+..||..|+..|..++||+..+|+.||..+||++.||+|||||||+|+|+..+.
T Consensus 11 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~l~~~qV~iWFqNrR~k~kr~~~~ 74 (77)
T d1pufa_ 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHhhhhhhhhHHHHHHHHHH
Confidence 3467789999999999999999999999999999999999999999999999999999987553
No 5
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.70 E-value=4.7e-18 Score=127.38 Aligned_cols=62 Identities=27% Similarity=0.449 Sum_probs=58.9
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 6 krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
|+||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||+|+|+|++..
T Consensus 1 k~rr~Rt~ft~~Q~~~Le~~F~~n~yPs~~~r~~LA~~lgl~~~~V~~WFqNrR~k~kk~~~ 62 (65)
T d1fjla_ 1 KQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62 (65)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHhCCCHHHhhHhhhhHHHHHHhccc
Confidence 56789999999999999999999999999999999999999999999999999999998754
No 6
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.70 E-value=4.9e-18 Score=124.25 Aligned_cols=57 Identities=21% Similarity=0.361 Sum_probs=55.1
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
|+.|++|+..|+..|+..|..|+||+..++..||..+||++.||+|||||||+|+||
T Consensus 1 k~~R~~ft~~Q~~~Le~~F~~n~yp~~~~r~~LA~~l~L~~~qV~~WFqNrR~k~kk 57 (57)
T d2e1oa1 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57 (57)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHhhhhhhhhccC
Confidence 568899999999999999999999999999999999999999999999999999986
No 7
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.70 E-value=5.3e-18 Score=124.05 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=55.0
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 9 KNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 9 R~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
|.|+.|+..||..|+..|..++||+..+|..||..+||++.||+|||||+|+|+||+
T Consensus 1 R~Rt~fT~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgl~~~qV~vWFqNrR~k~kk~ 57 (57)
T d1jgga_ 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57 (57)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhHhhhcchhhhhhhhcC
Confidence 578999999999999999999999999999999999999999999999999999974
No 8
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.70 E-value=4.9e-18 Score=124.15 Aligned_cols=55 Identities=29% Similarity=0.347 Sum_probs=53.6
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
|+.||..|+..|+..|..++||+..+|..||..+||++.||+|||||||+|+||+
T Consensus 1 Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~~V~iWFQNrRak~kk~ 55 (56)
T d9anta_ 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 55 (56)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCChhHeeeccccchhhhhhc
Confidence 6899999999999999999999999999999999999999999999999999985
No 9
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.69 E-value=1e-17 Score=126.73 Aligned_cols=61 Identities=30% Similarity=0.432 Sum_probs=58.2
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
+||.|+.|+..|++.|+..|..++||+..+|..||..+||++.||+|||||+|+|+|+..+
T Consensus 2 krr~Rt~ft~~Ql~~Le~~F~~~~yPs~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kk~~~ 62 (68)
T d1ftta_ 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCccceeeecccHHHHHhhccc
Confidence 5779999999999999999999999999999999999999999999999999999998744
No 10
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=1.9e-17 Score=125.15 Aligned_cols=62 Identities=24% Similarity=0.438 Sum_probs=58.2
Q ss_pred CCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
+||.|+.|+..||..|+..|..|+||+..+|..||..+||++.+|++||||+|+|+|+..+.
T Consensus 1 grR~Rt~ft~~Ql~~Le~~F~~n~yP~~~~r~~LA~~l~L~~~~V~~WFqNrR~k~kr~~~~ 62 (68)
T d2cuea1 1 GQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKL 62 (68)
T ss_dssp SCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcChhheeecCcchhHHHHhhhhh
Confidence 36688999999999999999999999999999999999999999999999999999987553
No 11
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.67 E-value=1.8e-17 Score=131.19 Aligned_cols=63 Identities=29% Similarity=0.405 Sum_probs=56.1
Q ss_pred CCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 5 GARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
++.+|.|+.|+..||..|+..|..|+||+..+|+.||..+||++.||+|||||||+|+||..+
T Consensus 25 ~~~kr~Rt~ft~~Ql~~Le~~F~~n~yPs~~~r~~LA~~l~l~~~~V~vWFqNrR~k~Kk~~~ 87 (88)
T d1b72a_ 25 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 87 (88)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCCCHHHHHHHHHHHHhCCCCchHHHHHHHHHcCCCHHHeeeccHhHHHHHHHhcc
Confidence 355778999999999999999999999999999999999999999999999999999998754
No 12
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}
Probab=99.67 E-value=5.4e-18 Score=131.12 Aligned_cols=64 Identities=25% Similarity=0.357 Sum_probs=59.4
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
..++||.|+.|+..||..|+..|..++||+..+|+.||..+||++.||+|||||||+|+|+.+.
T Consensus 6 p~k~rr~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~~~ 69 (77)
T d1vnda_ 6 PNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp SSSSCSSCCCCCTTHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHSSSSCSSSCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChhhhhhcchhHHHHHHHHhh
Confidence 3567788999999999999999999999999999999999999999999999999999987643
No 13
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.67 E-value=4e-17 Score=124.89 Aligned_cols=62 Identities=16% Similarity=0.245 Sum_probs=57.6
Q ss_pred CCCCCCcccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhcc
Q psy5913 7 RRKNATRETTSTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKM 68 (341)
Q Consensus 7 rRR~Rt~fS~~QL~~Le~~F~~-npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k~ 68 (341)
.++.|+.||..||..|+..|.+ ++||+..+|+.||..+||++.||+|||||||+|+||...+
T Consensus 1 g~~~r~~fT~~Ql~~Le~~F~~~n~yP~~~~r~~LA~~lgL~~~~VqvWFqNrRak~rk~~~~ 63 (72)
T d1uhsa_ 1 GSEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEGL 63 (72)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHccccCCHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhccCC
Confidence 3678999999999999999986 7899999999999999999999999999999999997654
No 14
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila melanogaster [TaxId: 7227]}
Probab=99.66 E-value=1.5e-17 Score=119.83 Aligned_cols=53 Identities=25% Similarity=0.368 Sum_probs=51.3
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHH
Q psy5913 9 KNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61 (341)
Q Consensus 9 R~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K 61 (341)
|.|+.|+..|+..|+..|..++||+..+|.+||..+||++.||+|||||||+|
T Consensus 1 R~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~lgL~~~qV~vWFqNrRaK 53 (53)
T d1p7ia_ 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53 (53)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred CCCccCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCChHHhhhcccccCCC
Confidence 57899999999999999999999999999999999999999999999999986
No 15
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.64 E-value=2.1e-17 Score=121.81 Aligned_cols=58 Identities=28% Similarity=0.493 Sum_probs=56.1
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
||.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||+|+|+|+.
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yP~~~~r~~LA~~l~l~~~~V~~WFqNrR~k~kr~ 59 (60)
T d1yz8p1 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59 (60)
T ss_dssp SCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCChHHHHHHHHHHCCChHHHHHHhHHHHHHHHhc
Confidence 5789999999999999999999999999999999999999999999999999999985
No 16
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.64 E-value=3.8e-17 Score=123.22 Aligned_cols=62 Identities=21% Similarity=0.238 Sum_probs=58.2
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
-..+||.|+.|+..|+..|+..|..++||+..++..||..+||++.+|+|||||+|+|+||.
T Consensus 5 ~~~~rr~Rt~~t~~q~~~Le~~F~~n~~P~~~~r~~La~~~~l~~~~V~~WFqNrR~k~Kk~ 66 (67)
T d1ocpa_ 5 VQARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66 (67)
T ss_dssp SCCSSSCCSSCCHHHHHHHHHHHSSCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHSSSSSC
T ss_pred hhccCCCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHHHHcCCHHHHHHHhHHHHHHHhcC
Confidence 34567899999999999999999999999999999999999999999999999999999874
No 17
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.61 E-value=1.2e-16 Score=119.97 Aligned_cols=61 Identities=23% Similarity=0.252 Sum_probs=58.0
Q ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 6 krRR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
+.+|.|+.|+..|+..|+..|..|+||+..++..||..+||++.||++||||+|+|.|+..
T Consensus 2 k~kR~Rt~~t~~Q~~~Le~~F~~n~~Ps~~~~~~LA~~l~l~~~~V~~WFqNrR~k~kk~~ 62 (66)
T d1bw5a_ 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSCC
T ss_pred CCCCCCcCcCHHHHHHHHHHHHHCCCCCHHHHHHHHHHcCcCHHHhhhhhHhHHHHHHHHH
Confidence 5678999999999999999999999999999999999999999999999999999998764
No 18
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1 (Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.61 E-value=2.1e-16 Score=123.28 Aligned_cols=62 Identities=23% Similarity=0.378 Sum_probs=58.0
Q ss_pred CCCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------CCccccccchhhhHHHHhhhhccc
Q psy5913 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITK---------------MTLTQVSTWFANARRRLKKENKMT 69 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lg---------------LsesQVkvWFQNRR~K~KK~~k~~ 69 (341)
||.|+.|+..||..|+..|..++||+..+|++||..+| |++.+|+|||||||+|+||..++.
T Consensus 1 Rr~R~~ft~~Ql~~LE~~F~~n~yP~~~~R~~LA~~~~~~~~~~~~~~~~~~~l~~~~V~vWFqNRR~k~kk~~~~a 77 (82)
T d2cufa1 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRANIA 77 (82)
T ss_dssp CCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CcCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhccccccccccchhccCCCHHHHHHHHhhhHHHHHHhhhHH
Confidence 67899999999999999999999999999999999875 999999999999999999987653
No 19
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus norvegicus) [TaxId: 10116]}
Probab=99.61 E-value=1.5e-16 Score=116.52 Aligned_cols=57 Identities=23% Similarity=0.303 Sum_probs=54.9
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 9 KNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 9 R~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
|.|+.|+..|+..|+..|..++||+..++..||..+||++.||+|||||+|+|+|+.
T Consensus 1 r~Rt~~s~~q~~~Le~~F~~~~~P~~~~~~~La~~l~l~~~~V~~WFqNrR~k~kr~ 57 (58)
T d1au7a1 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 57 (58)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHccCCCHHHHHHHHHHhCCCHHHHHHHHHHHhHHHHhc
Confidence 578999999999999999999999999999999999999999999999999999874
No 20
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.59 E-value=2.6e-16 Score=119.44 Aligned_cols=61 Identities=15% Similarity=0.197 Sum_probs=56.7
Q ss_pred CCCCCCCCcccHHHHHHHHHHHh-cCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 5 GARRKNATRETTSTLKAWLNEHK-KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 5 ~krRR~Rt~fS~~QL~~Le~~F~-~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
...+|.|++|+..|++.|+..|. .++||+..+++.||.++||++.||++||||+|+|+|+.
T Consensus 5 ~~~~r~R~~~t~~Q~~~Le~~F~~~~~~P~~~~~~~La~~lgl~~~qV~~WFqNrR~k~kk~ 66 (71)
T d1wi3a_ 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHS 66 (71)
T ss_dssp CCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHCCSS
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHhhHhhhccc
Confidence 45677899999999999999997 59999999999999999999999999999999999874
No 21
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.57 E-value=5.6e-16 Score=113.17 Aligned_cols=56 Identities=23% Similarity=0.300 Sum_probs=54.0
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 10 NATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 10 ~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
+||.++..|+..|+..|..++||+..++..||..+||++.||++||||+|+|+||.
T Consensus 1 kRT~~~~~q~~~Le~~F~~~~~P~~~~~~~LA~~lgL~~~qV~~WFqNrR~k~kk~ 56 (57)
T d1e3oc1 1 KRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56 (57)
T ss_dssp CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHcc
Confidence 47899999999999999999999999999999999999999999999999999974
No 22
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.57 E-value=4.5e-16 Score=112.05 Aligned_cols=53 Identities=23% Similarity=0.207 Sum_probs=51.2
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHh
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~K 63 (341)
|+.++..|+..|+..|..++||+..++..||..+||++.||++||||+|+|.|
T Consensus 1 Rt~~s~~q~~~Le~~F~~~~~P~~~~~~~LA~~lgl~~~qV~~WFqNrR~k~K 53 (53)
T d1le8a_ 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTSCHHHHHHHHHHHHHTTC
T ss_pred CCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHCCCHHHHHHHHHhhhhccC
Confidence 68899999999999999999999999999999999999999999999999875
No 23
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1, ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.56 E-value=2e-15 Score=115.94 Aligned_cols=54 Identities=19% Similarity=0.286 Sum_probs=50.5
Q ss_pred ccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhhc
Q psy5913 14 ETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67 (341)
Q Consensus 14 fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~k 67 (341)
+|..||..|+..|..|+||+..+|+.||..+||++.||++||||||+|.|+..+
T Consensus 11 ~T~~Q~~~Le~~F~~~~~P~~~~r~~LA~~l~l~~~~V~~WFqNrR~r~k~~~~ 64 (76)
T d2ecba1 11 KTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCCS
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHhHHHHHHHHHHHhH
Confidence 478999999999999999999999999999999999999999999999877544
No 24
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.52 E-value=4.9e-15 Score=112.83 Aligned_cols=59 Identities=32% Similarity=0.443 Sum_probs=50.5
Q ss_pred CCCCCcccHHHHHHHHHHHh---cCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 8 RKNATRETTSTLKAWLNEHK---KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 8 RR~Rt~fS~~QL~~Le~~F~---~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
||.|+.|+..|+..|+..|. .+|||+..+|++||..+||++.||++||||+|+|+|+..
T Consensus 2 rk~R~~~t~~q~~~Le~~f~~~~~~pYPs~~~k~~La~~~gl~~~qv~~WF~N~R~r~k~~~ 63 (73)
T d1pufb_ 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCT
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcccc
Confidence 45667777777766666664 699999999999999999999999999999999999754
No 25
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=99.52 E-value=1.2e-15 Score=118.47 Aligned_cols=61 Identities=11% Similarity=0.088 Sum_probs=55.7
Q ss_pred CCCCCCCCCcccHHHHHHHHHHHhc----CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 4 NGARRKNATRETTSTLKAWLNEHKK----NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 4 ~~krRR~Rt~fS~~QL~~Le~~F~~----npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
.+++||.|+.|+..|++.|+..|++ ++||+..+++.||..|||++.||+|||||+|.++|+
T Consensus 14 ~~~~kR~Rt~ft~~Q~~~L~~~fe~~~~~~~~p~~~~~~~la~~~gl~~~~i~vWFqN~R~~~k~ 78 (80)
T d1wh7a_ 14 GGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHHHHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred ccCCCCccccCCHHHHHHHHHHHHHhcccccCcCHHHHHHHHHHHCCCHHHeeeecccCcCCCCC
Confidence 4567789999999999999888875 899999999999999999999999999999988764
No 26
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.51 E-value=5.8e-15 Score=113.27 Aligned_cols=57 Identities=19% Similarity=0.312 Sum_probs=53.2
Q ss_pred CCCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 9 KNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 9 R~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
+.+.+++..|+..|+..|..|+||+..++..||..|+|++.||++||||+|+|+|+.
T Consensus 5 s~~~r~T~eQ~~~Le~~F~~n~~Ps~~~~~~La~~~gL~~~qV~~WF~NrR~k~k~~ 61 (76)
T d2ecca1 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhc
Confidence 345567899999999999999999999999999999999999999999999999985
No 27
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.48 E-value=3.8e-15 Score=105.62 Aligned_cols=50 Identities=26% Similarity=0.271 Sum_probs=48.5
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhH
Q psy5913 10 NATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59 (341)
Q Consensus 10 ~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR 59 (341)
.|+.|+..|+..|+..|..++||+..++..||..+||++.||++||||||
T Consensus 1 PRt~ft~~Q~~~Le~~F~~n~~P~~~~~~~LA~~l~l~~~~V~~WFqNrR 50 (50)
T d1s7ea1 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50 (50)
T ss_dssp CCSCCCHHHHHHHHHHTTSSCSSTHHHHHHHHTTSCSSSHHHHHHHHHCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhhcCCcCc
Confidence 47899999999999999999999999999999999999999999999997
No 28
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=99.46 E-value=1.6e-14 Score=106.26 Aligned_cols=54 Identities=28% Similarity=0.483 Sum_probs=43.8
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
++.....+|+.|+..+..+|||+..+|..||..+||++.||++||||+|+|.|+
T Consensus 5 ft~~q~~~L~~~f~~~~~~pyPs~~e~~~La~~~gL~~~qV~~WF~N~R~r~K~ 58 (60)
T d1k61a_ 5 FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHhHHhHhhcccccc
Confidence 444444445555555566799999999999999999999999999999999875
No 29
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=99.43 E-value=5e-14 Score=104.27 Aligned_cols=55 Identities=42% Similarity=0.763 Sum_probs=46.2
Q ss_pred CCCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 10 NATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 10 ~Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
.++.....+|+.|+..|..+|||+..++..||..+||+..||++||+|+|+|..+
T Consensus 8 ~~~~~~~~iL~~wf~~~~~nPyPs~~e~~~La~~~~l~~~qI~~WF~N~R~R~lq 62 (62)
T d1x2na1 8 VLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62 (62)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHhHHHHHHHHHHhcC
Confidence 3455556666666666678999999999999999999999999999999999753
No 30
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6, LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.42 E-value=1.8e-14 Score=103.30 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhh
Q psy5913 16 TSTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64 (341)
Q Consensus 16 ~~QL~~Le~~F~~-npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK 64 (341)
.+|+..|+..|.. ++||+..++..||..+||++.||++||||||+|.|+
T Consensus 2 ~~q~~iLE~~F~~~~~~P~~~~~~~LA~~~~ls~~qV~~WFqNrR~k~k~ 51 (52)
T d1x2ma1 2 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51 (52)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred hhHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccCc
Confidence 4678889999976 799999999999999999999999999999999875
No 31
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat (Rattus rattus) [TaxId: 10117]}
Probab=99.42 E-value=2.2e-14 Score=110.95 Aligned_cols=56 Identities=20% Similarity=0.280 Sum_probs=52.3
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhC---------------------CCccccccchhhhHHHHhhhh
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITK---------------------MTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lg---------------------LsesQVkvWFQNRR~K~KK~~ 66 (341)
|.+|+..||..|+..|+.++||+..+|+.||..++ |++.+|++||||||.|.|+..
T Consensus 1 R~~~tp~Ql~~Le~~F~~n~yPs~~~Re~LA~~ln~~~~~~~~~~~~~~~~~~~~~vt~~~V~~WF~NRR~~~kr~~ 77 (78)
T d1lfba_ 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFRH 77 (78)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHHHTTSCCC
T ss_pred CccCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhchhhhccccccccccccccccCCCHHHHHHHHHHHHHHHHHhc
Confidence 57899999999999999999999999999999994 899999999999999998753
No 32
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5, LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.33 E-value=1.3e-13 Score=101.23 Aligned_cols=54 Identities=13% Similarity=0.225 Sum_probs=46.2
Q ss_pred CCCcccHHHHHHHHHHHhc-CCCCCHHHHHHHHHHhCCCccccccchhhhHHHHh
Q psy5913 10 NATRETTSTLKAWLNEHKK-NPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63 (341)
Q Consensus 10 ~Rt~fS~~QL~~Le~~F~~-npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~K 63 (341)
.++++...+...|+..|.. ++||+..++..||.++||++.||++||||||+|.|
T Consensus 4 ~~~~~k~~~~~iLE~~F~~~~~yPs~~~~~~LA~~lgls~~qV~~WFqNrR~k~r 58 (59)
T d2cqxa1 4 DSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58 (59)
T ss_dssp CCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHS
T ss_pred CCCCCCccccHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHHHhhhcccC
Confidence 4455555566677888875 68999999999999999999999999999999976
No 33
>d1hlva1 a.4.1.7 (A:1-66) DNA-binding domain of centromere binding protein B (CENP-B) {Human (Homo sapiens) [TaxId: 9606]}
Probab=70.77 E-value=2.3 Score=30.16 Aligned_cols=47 Identities=23% Similarity=0.150 Sum_probs=35.6
Q ss_pred cccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHH
Q psy5913 13 RETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRL 62 (341)
Q Consensus 13 ~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~ 62 (341)
..+..+-..+...|+.++... +..+|+.+|+...+|..|..|+..=+
T Consensus 7 ~LT~~eK~~ii~~~e~g~k~s---q~eIA~~fGv~~STvs~IlKnK~kil 53 (66)
T d1hlva1 7 QLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAIL 53 (66)
T ss_dssp CCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred cCCHHHHHHHHHHHHcCCcch---HHHHHHHhCCChhHHHHHHHHHHHHH
Confidence 356666667777788886443 45789999999999999999965433
No 34
>d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]}
Probab=41.86 E-value=11 Score=25.47 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=26.3
Q ss_pred HHHHHHHhCCCccccccchhhhHHHHhhhh
Q psy5913 37 KIMLAIITKMTLTQVSTWFANARRRLKKEN 66 (341)
Q Consensus 37 R~~LA~~lgLsesQVkvWFQNRR~K~KK~~ 66 (341)
-.++|..+|++...|+++.+..|.+.|+..
T Consensus 37 ~~eIA~~lgis~~tv~~~l~ra~~~Lr~~l 66 (68)
T d1or7a1 37 YEEIAAIMDCPVGTVRSRIFRAREAIDNKV 66 (68)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHHHHHHc
Confidence 457899999999999999999999988753
No 35
>d1rp3a2 a.4.13.2 (A:164-234) Sigma factor sigma-28 (FliA) {Aquifex aeolicus [TaxId: 63363]}
Probab=37.14 E-value=14 Score=24.72 Aligned_cols=45 Identities=18% Similarity=0.052 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchhhhHHHHhhh
Q psy5913 16 TSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65 (341)
Q Consensus 16 ~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQNRR~K~KK~ 65 (341)
..+...+...|...- ...++|..+|++...|++.....|.+.|+.
T Consensus 24 ~~~r~v~~l~~~~~~-----s~~eIA~~lgis~~tv~~~~~ra~~~Lr~~ 68 (71)
T d1rp3a2 24 EREKLVIQLIFYEEL-----PAKEVAKILETSVSRVSQLKAKALERLREM 68 (71)
T ss_dssp HHHHHHHHHHHTSCC-----CHHHHHHHTTSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHhC-----CHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 344445554444432 356789999999999999999988888875
No 36
>d1ijwc_ a.4.1.2 (C:) HIN recombinase (DNA-binding domain) {Synthetic}
Probab=32.73 E-value=16 Score=23.71 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=31.1
Q ss_pred CCcccHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCccccccchh
Q psy5913 11 ATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFA 56 (341)
Q Consensus 11 Rt~fS~~QL~~Le~~F~~npYPs~~eR~~LA~~lgLsesQVkvWFQ 56 (341)
...++.+|++.....+.... -+..+|+.+|++...|-.||.
T Consensus 3 ~~~lt~~q~~~a~~l~~~G~-----s~~~iA~~~gVSr~TiYry~p 43 (47)
T d1ijwc_ 3 PRAINKHEQEQISRLLEKGH-----PRQQLAIIFGIGVSTLYRYFP 43 (47)
T ss_dssp CCSSCHHHHHHHHHHHHTTC-----CHHHHHHHHTCCHHHHHHHSC
T ss_pred CCcCCHHHHHHHHHHHHCCC-----CHHHHHHHHCcCHHHHHhhCC
Confidence 34567788877777776543 266889999999999988885
Done!