RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5913
(341 letters)
>gnl|CDD|203350 pfam05920, Homeobox_KN, Homeobox KN domain. This is a homeobox
transcription factor KN domain conserved from fungi to
human and plants.
Length = 40
Score = 72.9 bits (180), Expect = 7e-17
Identities = 21/40 (52%), Positives = 26/40 (65%)
Query: 22 WLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
WL EH NPYP++ EK LA T ++ Q+ WF NARRR
Sbjct: 1 WLLEHLHNPYPSEEEKSELARQTGLSRKQIDNWFINARRR 40
>gnl|CDD|238039 cd00086, homeodomain, Homeodomain; DNA binding domains involved
in the transcriptional regulation of key eukaryotic
developmental processes; may bind to DNA as monomers or
as homo- and/or heterodimers, in a sequence-specific
manner.
Length = 59
Score = 65.7 bits (161), Expect = 4e-14
Identities = 21/60 (35%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+R T E L+ +KNPYP++ E+ LA +T QV WF N R +LK+
Sbjct: 3 KRTRFTPEQLEELEKEF---EKNPYPSREEREELAKELGLTERQVKIWFQNRRAKLKRSE 59
>gnl|CDD|197696 smart00389, HOX, Homeodomain. DNA-binding factors that are
involved in the transcriptional regulation of key
developmental processes.
Length = 57
Score = 60.7 bits (148), Expect = 3e-12
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 3/57 (5%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
+R + T E L+ +KNPYP++ E+ LA ++ QV WF N R + K
Sbjct: 4 KRTSFTPEQLEELEKEF---QKNPYPSREEREELAKKLGLSERQVKVWFQNRRAKWK 57
>gnl|CDD|200956 pfam00046, Homeobox, Homeobox domain.
Length = 57
Score = 47.1 bits (113), Expect = 2e-07
Identities = 20/58 (34%), Positives = 28/58 (48%), Gaps = 3/58 (5%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+R T E L+ E +KN YP+ E+ LA +T QV WF N R + K+
Sbjct: 3 KRTTFTPEQLEELEK---EFEKNRYPSAEEREELAKKLGLTERQVKVWFQNRRAKWKR 57
>gnl|CDD|227863 COG5576, COG5576, Homeodomain-containing transcription factor
[Transcription].
Length = 156
Score = 43.6 bits (103), Expect = 2e-05
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+ K R T L E + NPYP+ +I L+++ M V WF N R + KK+
Sbjct: 51 PKSKR-RRTTDEQLMVLEREFEINPYPSSITRIKLSLLLNMPPKSVQIWFQNKRAKEKKK 109
Query: 66 NKMTWEPRNRVEDEDNNNDDH 86
E R E+ D
Sbjct: 110 RSGKVEQRPGEEEADLAKIGS 130
>gnl|CDD|214716 smart00548, IRO, Motif in Iroquois-class homeodomain proteins
(only). Unknown function.
Length = 18
Score = 30.6 bits (70), Expect = 0.058
Identities = 9/13 (69%), Positives = 11/13 (84%)
Query: 194 KPRIWSLADMASK 206
KP+IWSLAD A+
Sbjct: 5 KPKIWSLADTATS 17
>gnl|CDD|222127 pfam13436, Gly-zipper_OmpA, Glycine-zipper containing OmpA-like
membrane domain.
Length = 116
Score = 32.7 bits (75), Expect = 0.088
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
Query: 264 EQYQRHISSLSSNNANSSPLSS--VGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSS 321
QY + A S VGA AAA A++GGG G A A +A+ +
Sbjct: 32 RQYAASQVGGKAQEAARSAAGGAAVGAAAGAAAGAAAGGGGDGAAIGAAAGALVGAAAGA 91
Query: 322 GSSVSES 328
GS S
Sbjct: 92 GSGQYSS 98
>gnl|CDD|234367 TIGR03828, pfkB, 1-phosphofructokinase. This enzyme acts in
concert with the fructose-specific phosphotransferase
system (PTS) which imports fructose as
fructose-1-phosphate. The action of
1-phosphofructokinase results in
beta-D-fructose-1,6-bisphosphate and is an entry point
into glycolysis (GenProp0688).
Length = 304
Score = 33.3 bits (77), Expect = 0.15
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
Query: 282 PLSSVGA---VVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSSV 325
+S+VGA +VA A G S LAV AG+++A S G+ +
Sbjct: 243 VVSTVGAGDSMVAGFLAGLESGLSLEEALRLAVAAGSAAAFSEGTGL 289
>gnl|CDD|234133 TIGR03168, 1-PFK, hexose kinase, 1-phosphofructokinase family.
This family consists largely of 1-phosphofructokinases,
but also includes tagatose-6-kinases and
6-phosphofructokinases.
Length = 303
Score = 32.5 bits (75), Expect = 0.23
Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
Query: 282 PLSSVGA---VVAAAAAASSGGGSSTTPFGLAVTAGASSASSSG 322
+++VGA +VA A + G S AV AG+++A S G
Sbjct: 243 VVNTVGAGDSMVAGFLAGLARGLSLEEALRFAVAAGSAAAFSPG 286
>gnl|CDD|226365 COG3846, TrbL, Type IV secretory pathway, TrbL components
[Intracellular trafficking and secretion].
Length = 452
Score = 32.0 bits (73), Expect = 0.42
Identities = 17/46 (36%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 286 VGAVVAAAAAASSG--GGSSTTPFGLAVTAGASSASSSGSSVSESP 329
GA +A A A++G SS T G ++ + A+SA +SG S S
Sbjct: 306 AGAALAGARGATAGASLASSVTALGTSMASAAASAFASGRKGSGSG 351
>gnl|CDD|237537 PRK13875, PRK13875, conjugal transfer protein TrbL; Provisional.
Length = 440
Score = 32.2 bits (74), Expect = 0.43
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
Query: 283 LSSVGAVVAAAAA---ASSGGGSSTTPFGLAVTAGASSASSSGSSVSESP 329
L++ GA VAAAA A+ GG ++ A GA++A + S+ S
Sbjct: 279 LAAGGAAVAAAAGAGLAAGGGAAAAGGAAAAARGGAAAAGGASSAYSAGA 328
Score = 31.4 bits (72), Expect = 0.69
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 286 VGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSS 324
G AAA+ G ++ G A GASSA S+G++
Sbjct: 292 AGLAAGGGAAAAGGAAAAA-RGGAAAAGGASSAYSAGAA 329
Score = 31.0 bits (71), Expect = 0.88
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 284 SSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSSV 325
++VG +AA AA + + GLA GA++A + ++
Sbjct: 273 AAVGTGLAAGGAAVAAAAGA----GLAAGGGAAAAGGAAAAA 310
>gnl|CDD|131830 TIGR02783, TrbL_P, P-type conjugative transfer protein TrbL. The
TrbL protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbL
is a homolog of the F-type TraG protein (which is
believed to be a mating pair stabilization pore-forming
protein, pfam07916) as well as the vir system VirB6
protein [Cellular processes, Conjugation].
Length = 298
Score = 31.2 bits (71), Expect = 0.61
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 8/55 (14%)
Query: 270 ISSLSSNNANSSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSS 324
+SL S + +V A A A A++GG A+ AGASSA + S
Sbjct: 250 AASLVSGASVMGAGGAVAAAAAVAGVAAAGGA--------ALGAGASSAMAGASG 296
>gnl|CDD|224030 COG1105, FruK, Fructose-1-phosphate kinase and related
fructose-6-phosphate kinase (PfkB) [Carbohydrate
transport and metabolism].
Length = 310
Score = 30.6 bits (70), Expect = 0.95
Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 284 SSVGA---VVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSSVSESPGL 331
S+VGA +VA A G S AV GA++AS G+ + + L
Sbjct: 247 STVGAGDSMVAGFLAGLLKGKSLEEALRFAVACGAAAASQKGTGIPDLDQL 297
>gnl|CDD|165099 PHA02732, PHA02732, hypothetical protein; Provisional.
Length = 1467
Score = 30.9 bits (69), Expect = 1.2
Identities = 29/118 (24%), Positives = 44/118 (37%), Gaps = 14/118 (11%)
Query: 213 SLPSSVFSSGKMISPLAGRPHHLPHPNSYRHDLYRLYGSHLGAHPGSTEFLEQYQRHISS 272
S + S G I+ A P Y GS L P T +I
Sbjct: 1157 SYKFNALSLGFSITADAAIFSLFGIPAPQLLSSYIPTGSVLYQDPIFT--------YIPP 1208
Query: 273 LSSNNANSSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSSVSESPG 330
+ ++ + A + +AA+S ++ TP +SS+SSS S+S SPG
Sbjct: 1209 GIIGMSGTNTFTFKAAQLQLSAASSPPAATTPTP------PPSSSSSSSAQSISTSPG 1260
>gnl|CDD|177621 PHA03385, IX, capsid protein IX,hexon associated protein IX;
Provisional.
Length = 135
Score = 29.4 bits (66), Expect = 1.3
Identities = 19/53 (35%), Positives = 29/53 (54%), Gaps = 2/53 (3%)
Query: 271 SSLSSNNANSSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGS 323
S+L+ +SS L + A AAAAAA+S FG ++ +SS++S S
Sbjct: 46 STLTYATVSSSSLDTAAA--AAAAAAASTARGMALDFGYYPSSNSSSSASRSS 96
>gnl|CDD|235082 PRK02888, PRK02888, nitrous-oxide reductase; Validated.
Length = 635
Score = 30.7 bits (70), Expect = 1.3
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 288 AVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSSVSESPG 330
A+ AA AA S G A A A++A+++G +PG
Sbjct: 19 ALAGAAGAAGSTGLLGGALAAGAAAAAAAAAAAAGGKYEVAPG 61
>gnl|CDD|221391 pfam12042, RP1-2, Tubuliform egg casing silk strands structural
domain. Spiders use fibroins to make silk strands. This
family includes tubuliform silk fibroins which are used
to protect egg cases. This domain is a structural domain
which is found in repeats of up to 20 in many
individuals (although this is not necessarily the case).
RP1 makes up structural domains in the N terminal while
RP2 makes up structural domains in the C terminal.
Length = 167
Score = 29.8 bits (67), Expect = 1.3
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 273 LSSNNANSSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSSVSES 328
L+++NA+S S A+ A+AA++++ S++ A + A+SA S +S S S
Sbjct: 107 LNASNASSLASSFASALSASAASSAAQAASASAAAAAAQSQAAASAFSQAASQSSS 162
Score = 27.9 bits (62), Expect = 5.6
Identities = 14/55 (25%), Positives = 29/55 (52%), Gaps = 7/55 (12%)
Query: 270 ISSLSSNNANSSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGSS 324
S+LS++ A+S+ ++ + AAAA + + + + A + S+S S +S
Sbjct: 120 ASALSASAASSAAQAASASAAAAAAQSQAAASAFS-------QAASQSSSQSAAS 167
>gnl|CDD|182745 PRK10803, PRK10803, tol-pal system protein YbgF; Provisional.
Length = 263
Score = 30.2 bits (68), Expect = 1.4
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 283 LSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGS 323
LSS GA + + SG +S TP A TA A + SG
Sbjct: 101 LSSGGAAAQSTSGDQSGAAASATPAADAGTANAGAPVQSGD 141
>gnl|CDD|114045 pfam05297, Herpes_LMP1, Herpesvirus latent membrane protein 1
(LMP1). This family consists of several latent membrane
protein 1 or LMP1s mostly from Epstein-Barr virus. LMP1
of EBV is a 62-65 kDa plasma membrane protein possessing
six membrane spanning regions, a short cytoplasmic
N-terminus and a long cytoplasmic carboxy tail of 200
amino acids. EBV latent membrane protein 1 (LMP1) is
essential for EBV-mediated transformation and has been
associated with several cases of malignancies. EBV-like
viruses in Cynomolgus monkeys (Macaca fascicularis) have
been associated with high lymphoma rates in
immunosuppressed monkeys.
Length = 382
Score = 30.4 bits (68), Expect = 1.5
Identities = 23/80 (28%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 75 RVEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGS-----SEDGDRPPNHRLDLLDRPGGA 129
R DE +++D +++ D H +S G S GD PP +L PGG
Sbjct: 190 RHSDEHHHDDSLPHPQQATDDSGHESDSNSNEGRHHLLVSGAGDGPPLCSQNL-GAPGGG 248
Query: 130 VDTGSEWSESRPDSGPDSPE 149
D G + ++ D+GP P+
Sbjct: 249 PDNGPQDPDNTDDNGPQDPD 268
>gnl|CDD|238570 cd01164, FruK_PfkB_like, 1-phosphofructokinase (FruK), minor
6-phosphofructokinase (pfkB) and related sugar kinases.
FruK plays an important role in the predominant pathway
for fructose utilisation.This group also contains
tagatose-6-phophate kinase, an enzyme of the tagatose
6-phosphate pathway, which responsible for breakdown of
the galactose moiety during lactose metabolism by
bacteria such as L. lactis.
Length = 289
Score = 30.2 bits (69), Expect = 1.6
Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 282 PLSSVGA---VVAAAAAASSGGGSSTTPFGLAVTAGASSASSSG 322
+S+VGA +VA A + G S LAV AG+++A S G
Sbjct: 244 VVSTVGAGDSMVAGFVAGLAQGLSLEEALRLAVAAGSATAFSPG 287
>gnl|CDD|219500 pfam07655, Secretin_N_2, Secretin N-terminal domain. This is a
short domain found in bacterial type II/III secretory
system proteins. The architecture of these proteins
suggest that this family may be functionally analogous
to pfam03958.
Length = 95
Score = 28.1 bits (63), Expect = 2.0
Identities = 10/31 (32%), Positives = 21/31 (67%)
Query: 311 VTAGASSASSSGSSVSESPGLHNNNNNNNNN 341
VT+G+ S+S S SS S S + +++++++
Sbjct: 21 VTSGSVSSSGSNSSSSSSNSSNGGSSSSSSS 51
>gnl|CDD|236720 PRK10577, PRK10577, iron-hydroxamate transporter permease subunit;
Provisional.
Length = 668
Score = 30.2 bits (69), Expect = 2.0
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 5/46 (10%)
Query: 280 SSPLSSVGAVVAAAAAASSGGGSSTTPF-----GLAVTAGASSASS 320
S + G ++AAA + GG +P G+ V+ + ++
Sbjct: 122 SQLAAFAGGLLAAALVFALAGGKRLSPLRLVLAGMVVSLYLGALTT 167
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 28.8 bits (65), Expect = 2.0
Identities = 11/71 (15%), Positives = 24/71 (33%), Gaps = 15/71 (21%)
Query: 59 RRRLKKENKMTWEPR--------NRVEDEDNNNDDHSDGRKSADPKDHL-------DSKD 103
R+R+++E K E + +E+E+++ +D D +
Sbjct: 54 RKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDY 113
Query: 104 SGTGSSEDGDR 114
ED +
Sbjct: 114 EEEYIDEDKYK 124
>gnl|CDD|227717 COG5430, COG5430, Uncharacterized secreted protein [Function
unknown].
Length = 174
Score = 29.0 bits (65), Expect = 2.2
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 280 SSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSASSSGS 323
+ ++ A AA A S G ++T V+ + S
Sbjct: 11 GTLACALLLACALAAGAVSSGLAATATTTFTVSITVGADCMISS 54
>gnl|CDD|215032 PLN00022, PLN00022, electron transfer flavoprotein subunit alpha;
Provisional.
Length = 356
Score = 29.4 bits (66), Expect = 3.0
Identities = 27/78 (34%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Query: 267 QRHISSLSSNNANSSPLSSV-------GAV----VAAAAAASSGGGSSTT------PFGL 309
R ISS SS + S +S++ G+V ++A AAA S G S+ G
Sbjct: 11 PRAISSRSSIASQSRQISTLVVAEHEGGSVKPQSLSAVAAAKSLLGESSPISLLLAGSGP 70
Query: 310 AVTAGASSASSSGSSVSE 327
++ AS A+SS SVSE
Sbjct: 71 SLQQAASHAASSHPSVSE 88
>gnl|CDD|151550 pfam11106, YjbE, Exopolysaccharide production protein YjbE. YjbE
is part of a four gene operon which is involved in
exopolysaccharide production. The expression of YjbE is
higher than the rest of the operon yjbEFGH. It appears
to be restricted to Enterobacteriaceae.
Length = 80
Score = 27.2 bits (59), Expect = 3.3
Identities = 17/48 (35%), Positives = 29/48 (60%), Gaps = 2/48 (4%)
Query: 271 SSLSSNNANSSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSA 318
+S+S+ +++++ S+VG+ V A AA+ GG S T G T S+A
Sbjct: 35 TSVSAGSSSATASSTVGSAVGVALAATGGGDGSNT--GTTTTTTTSTA 80
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 28.8 bits (64), Expect = 3.8
Identities = 17/88 (19%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 64 KENKMTWEPRNRVEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSED-----GDRPPNH 118
+E + E R E+ED S G + + + + + G+ ED G+R
Sbjct: 177 EEEERLEESDGREEEEDEEVGSDSYGEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKK 236
Query: 119 RLD--LLDRPGGAVDTGSEWSESRPDSG 144
+ + ++ + EW E P
Sbjct: 237 QGEEEEMEEEVINLFE-IEWEEESPSEE 263
>gnl|CDD|178228 PLN02619, PLN02619, nucleoside-diphosphate kinase.
Length = 238
Score = 28.7 bits (64), Expect = 4.4
Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 259 STEFLEQYQRHISSLSSNNANSSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGASSA 318
S++ R SL S+ N+S LS G VAAAAA S+GG G+S+A
Sbjct: 2 SSQICRSASRAARSLLSSAKNASFLSE-GRAVAAAAAVSAGGKPPLLASAFGRATGSSTA 60
Query: 319 SSS 321
S+
Sbjct: 61 SAQ 63
>gnl|CDD|132837 cd07198, Patatin, Patatin-like phospholipase. Patatin is a storage
protein of the potato tuber that shows Phospholipase A2
activity (PLA2; EC 3.1.1.4). Patatin catalyzes the
nonspecific hydrolysis of phospholipids, glycolipids,
sulfolipids, and mono- and diacylglycerols, thereby
showing lipid acyl hydrolase activity. The active site
includes an oxyanion hole with a conserved GGxR motif;
it is found in almost all the members of this family.
The catalytic dyad is formed by a serine and an
aspartate. Patatin belongs to the alpha-beta hydrolase
family which is identified by a characteristic
nucleophile elbow with a consensus sequence of
Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu =
nucleophile). Members of this family have been found
also in vertebrates. This family includes PNPLA (1-9),
TGL (3-5), ExoU-like, and SDP1-like subfamilies. There
are some additional hypothetical proteins included in
this family.
Length = 172
Score = 28.1 bits (63), Expect = 4.8
Identities = 14/48 (29%), Positives = 21/48 (43%), Gaps = 9/48 (18%)
Query: 250 GSHLGA-HPGSTEFLEQYQRHISSLSSNNANSSPLSSVGAVVAAAAAA 296
G LG H G + L + I ++ +S GA+VAA A+
Sbjct: 6 GGALGIYHVGVAKALRERGPLIDIIAG--------TSAGAIVAALLAS 45
>gnl|CDD|223505 COG0428, COG0428, Predicted divalent heavy-metal cations
transporter [Inorganic ion transport and metabolism].
Length = 266
Score = 28.1 bits (63), Expect = 5.6
Identities = 13/36 (36%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 280 SSPLSSVGAVVAAAAAASSGGGSSTTPFGLAVTAGA 315
S +GAV+ A S PF LA AGA
Sbjct: 189 SGLAEPLGAVIGAYLLGISSPL--VLPFALAFAAGA 222
>gnl|CDD|223039 PHA03307, PHA03307, transcriptional regulator ICP4; Provisional.
Length = 1352
Score = 28.6 bits (64), Expect = 5.8
Identities = 22/128 (17%), Positives = 37/128 (28%), Gaps = 8/128 (6%)
Query: 72 PRNRVEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDRPPNHRLDLLDRPG---G 128
R+ ++ + GR +AD S S + SS G P N P
Sbjct: 208 RRSSPISASASSPAPAPGRSAADDAGASSSDSSSSESSGCGWGPENECPLPRPAPITLPT 267
Query: 129 AVDTGSEWSESRPDSGPDSPECLFERPHHFLHPAYHGLHHPHARFQSSPPPSHGPGATIS 188
+ S W+ GP S P+ P + S P + ++
Sbjct: 268 RIWEASGWNGPSSRPGPASSSSSPRERSPSPSPS-----SPGSGPAPSSPRASSSSSSSR 322
Query: 189 PVNVNKPR 196
+ +
Sbjct: 323 ESSSSSTS 330
>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related
aminotransferases [Amino acid transport and metabolism].
Length = 447
Score = 28.3 bits (64), Expect = 5.9
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 3/54 (5%)
Query: 213 SLPSSVFSSGKMISPLAGRPHHLPHPNSYRHDLYRLYGSHLGAHPGSTEFLEQY 266
SL S PL +H+P+PN YR + E++E+
Sbjct: 162 SLTGSKPPYKAGFGPLPPGVYHVPYPNPYRC---PFGIGGEECGDDALEYIERA 212
>gnl|CDD|222182 pfam13505, OMP_b-brl, Outer membrane protein beta-barrel domain.
This domain is found in a wide range of outer membrane
proteins. This domain assumes a membrane bound
beta-barrel fold.
Length = 172
Score = 27.7 bits (62), Expect = 5.9
Identities = 9/46 (19%), Positives = 12/46 (26%), Gaps = 2/46 (4%)
Query: 288 AVVAAAAAASSG--GGSSTTPFGLAVTAGASSASSSGSSVSESPGL 331
+A A S+ S F + G S G G
Sbjct: 1 LALALLLALSAPAFAASDFGGFYVGGGYGVSDIDGDGDGSDSGTGF 46
>gnl|CDD|185352 PRK15455, PRK15455, PrkA family serine protein kinase;
Provisional.
Length = 644
Score = 28.0 bits (63), Expect = 8.1
Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 4/46 (8%)
Query: 1 MDI--NGARRKNATRETTSTLKAWLNEHKKNP--YPTKGEKIMLAI 42
MDI + +R A +E +L+ +L K++P Y E++++AI
Sbjct: 1 MDIFDHYQQRYEAAKEEEFSLQEYLELCKQDPSAYANAAERLLMAI 46
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 28.0 bits (62), Expect = 8.3
Identities = 14/86 (16%), Positives = 27/86 (31%)
Query: 23 LNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMTWEPRNRVEDEDNN 82
LN K + + +L + Q + ++ N E VED ++
Sbjct: 336 LNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDE 395
Query: 83 NDDHSDGRKSADPKDHLDSKDSGTGS 108
ND + ++H + D
Sbjct: 396 NDHSKRICDDDELENHFRAADEKNSH 421
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 27.7 bits (62), Expect = 8.7
Identities = 17/120 (14%), Positives = 27/120 (22%), Gaps = 10/120 (8%)
Query: 71 EPRNRVEDEDNNNDDHSDGRKSADPKDHLDSKDSGTGSSEDGDRPPNHRLDLLDRPGGAV 130
P +++ED D S + D+ + S+ P P
Sbjct: 149 NPGPPLDEEDE--DADVATTNSDNSFPGEDADPASASPSDPPSSSPGV-PSFPSPPED-- 203
Query: 131 DTGSEWSESRPDSGPDSPECLFERPHHFLHPAYHGLHHPHARFQSSPPPSHGPGATISPV 190
S S P +P + P PPP +
Sbjct: 204 -----PSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPVQQVPPLSTAK 258
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.308 0.126 0.376
Gapped
Lambda K H
0.267 0.0792 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 17,189,746
Number of extensions: 1608926
Number of successful extensions: 1992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1922
Number of HSP's successfully gapped: 100
Length of query: 341
Length of database: 10,937,602
Length adjustment: 98
Effective length of query: 243
Effective length of database: 6,590,910
Effective search space: 1601591130
Effective search space used: 1601591130
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 59 (26.4 bits)