RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5913
(341 letters)
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 80.5 bits (199), Expect = 4e-20
Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+R + T+ +++WL +H +PYPT+ EK +A T +TL QV+ WF NARRR+ +
Sbjct: 5 KRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQ 62
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 76.0 bits (187), Expect = 2e-18
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
R T+E L++W ++ +NPY L T ++ Q+ W +N RR+ K
Sbjct: 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 73.1 bits (179), Expect = 3e-17
Identities = 25/68 (36%), Positives = 35/68 (51%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+R+N ++ T L + H NPYP++ K LA +T++QVS WF N R R KK
Sbjct: 4 KRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNI 63
Query: 67 KMTWEPRN 74
E N
Sbjct: 64 GKFQEEAN 71
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 62.3 bits (151), Expect = 2e-13
Identities = 13/61 (21%), Positives = 24/61 (39%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
AR++ T + K P P+ + +A + V WF N R++ K+
Sbjct: 7 ARKRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKRS 66
Query: 66 N 66
+
Sbjct: 67 S 67
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 59.5 bits (144), Expect = 2e-12
Identities = 17/61 (27%), Positives = 30/61 (49%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+R++ T + S L ++ YP + LA T +T ++ WF N R RL+K++
Sbjct: 2 QRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 61
Query: 67 K 67
Sbjct: 62 T 62
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 57.2 bits (138), Expect = 1e-11
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
RRK + + + K+ Y + E+ LA + +T TQV WF N R ++K++
Sbjct: 2 RRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61
Query: 67 K 67
K
Sbjct: 62 K 62
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 77
Score = 57.1 bits (138), Expect = 2e-11
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
+ RK T E N Y T+ + +A + +T QV WF N R ++KK
Sbjct: 12 STRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKI 71
Query: 66 NK 67
NK
Sbjct: 72 NK 73
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 56.4 bits (136), Expect = 2e-11
Identities = 15/62 (24%), Positives = 23/62 (37%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+ T L + NP P K L +T ++ + WF N R + KK +
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
Query: 67 KM 68
M
Sbjct: 63 IM 64
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 56.5 bits (136), Expect = 4e-11
Identities = 17/61 (27%), Positives = 26/61 (42%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
T TT L E N Y ++ ++ +A ++ TQV WF N R + KK
Sbjct: 27 PSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRE 86
Query: 67 K 67
+
Sbjct: 87 R 87
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 60
Score = 55.7 bits (134), Expect = 4e-11
Identities = 16/58 (27%), Positives = 28/58 (48%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
R+ T T+ L+ ++N YP + +A+ T +T +V WF N R + +K
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKR 59
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 52.5 bits (126), Expect = 6e-10
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
++N T T ++A E ++ YP + LA + ++ WF+N R + ++E K
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 68 M 68
+
Sbjct: 62 L 62
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 52.6 bits (126), Expect = 6e-10
Identities = 16/60 (26%), Positives = 24/60 (40%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENK 67
R+ T T+S + + Y T L+ + QV WF N RRR K ++
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 51.0 bits (122), Expect = 2e-09
Identities = 12/57 (21%), Positives = 25/57 (43%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
+ R + + + Y + E+ LA + +++ QV TWF N R + ++
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 50.2 bits (120), Expect = 3e-09
Identities = 21/59 (35%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
R+ TR T L+ E N Y T+ +I +A +T Q+ WF N R + KKEN
Sbjct: 1 RQTYTRYQTLELE---KEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 56
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 49.9 bits (119), Expect = 4e-09
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
+ + + + + L+ ++ EK +A +T QV WF N R R K
Sbjct: 1 KSSISPQARAFLEQVF---RRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 50.0 bits (119), Expect = 6e-09
Identities = 16/61 (26%), Positives = 27/61 (44%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+RK T + ++ Y + E+ LA + ++T TQV WF N R + K+
Sbjct: 9 KRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQ 68
Query: 67 K 67
Sbjct: 69 N 69
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 49.1 bits (117), Expect = 9e-09
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
RK + L+ E+ N + TK ++ ++ T ++ Q++ WF N R + KK
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 49.0 bits (116), Expect = 1e-08
Identities = 14/66 (21%), Positives = 24/66 (36%), Gaps = 3/66 (4%)
Query: 2 DINGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRR 61
D + K T E L+A + T E L TK+T ++ WF ++
Sbjct: 2 DFTPQKFKEKTAEQLRVLQASF---LNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKS 58
Query: 62 LKKENK 67
+ +
Sbjct: 59 KALKEE 64
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 48.2 bits (115), Expect = 2e-08
Identities = 8/53 (15%), Positives = 17/53 (32%), Gaps = 2/53 (3%)
Query: 12 TRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
T + + L+ +P + L+ + + WF R + K
Sbjct: 1 TAQPNAILEKVFTAI--TKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 48.2 bits (114), Expect = 3e-08
Identities = 16/72 (22%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Query: 4 NGARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
+G+ K T+E + LK++ + + + + L IT + ++ WF + R LK
Sbjct: 3 SGSSGKRKTKEQLAILKSF---FLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALK 59
Query: 64 KENKMTWEPRNR 75
++ W N
Sbjct: 60 H-GQLKWFRDNA 70
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 47.8 bits (113), Expect = 4e-08
Identities = 10/61 (16%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
R + E L++++++ YP + L+ + + +F N R +K
Sbjct: 10 SRTKISLEALGILQSFIHDV--GLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKHSG 67
Query: 67 K 67
Sbjct: 68 P 68
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 46.8 bits (111), Expect = 5e-08
Identities = 18/57 (31%), Positives = 28/57 (49%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
RK T TT+ L A + ++ Y + E+ + +T TQV WF N R + K+
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 46.8 bits (111), Expect = 5e-08
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
R TR+ L+ E K Y ++ + LA + + + WF N R + K++
Sbjct: 2 YRTAFTRDQLGRLE---KEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 57
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 46.9 bits (111), Expect = 5e-08
Identities = 13/60 (21%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKEN 66
+R + L+ E+ PT + ++A M + WF+N R++ K+ N
Sbjct: 1 KRTSIETNIRVALEKSFMEN---QKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRIN 57
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 45.3 bits (107), Expect = 2e-07
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKK 64
RR + L+ EH P+ E + +A + V WF N R+R K+
Sbjct: 2 RRTTISIAAKDALERHFGEH---SKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKR 56
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 44.5 bits (105), Expect = 3e-07
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANAR 59
R T TL A K+N P+K +I ++ + L+ VS +F NAR
Sbjct: 2 RLVFTDVQRRTLHA---IFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 42.5 bits (100), Expect = 1e-06
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 12 TRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
T ++ L E +N Y T+ + L+ + Q+ WF N R K
Sbjct: 4 TAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQN--ARAK 53
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 43.5 bits (102), Expect = 1e-06
Identities = 14/76 (18%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 8 RKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLA---------------IITKMTLTQVS 52
R + L + +N YP + ++ +A + ++T +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 53 TWFANARRRLKKENKM 68
WFAN R+ +K+ +
Sbjct: 61 NWFANRRKEIKRRANI 76
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 42.4 bits (100), Expect = 2e-06
Identities = 10/57 (17%), Positives = 19/57 (33%), Gaps = 2/57 (3%)
Query: 7 RRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
E TL+ YP + L+ ++ ++ WF + R + K
Sbjct: 4 DSPVNKVEPNDTLEKVFVSV--TKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 39.6 bits (92), Expect = 3e-05
Identities = 13/70 (18%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 6 ARRKNA--TRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLK 63
A T + L+ +K N +P ++A +T Q WF +
Sbjct: 1 GSEGAATMTEDQVEILEYNF--NKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWR 58
Query: 64 KENKMTWEPR 73
+ + E R
Sbjct: 59 RSEGLPSECR 68
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1)
{Rat (Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 39.0 bits (90), Expect = 4e-05
Identities = 15/62 (24%), Positives = 24/62 (38%)
Query: 6 ARRKNATRETTSTLKAWLNEHKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
R+KN ++E TL N + + +T +V WFAN R+
Sbjct: 17 ERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAFR 76
Query: 66 NK 67
+K
Sbjct: 77 HK 78
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 38.8 bits (90), Expect = 7e-05
Identities = 6/55 (10%), Positives = 12/55 (21%), Gaps = 1/55 (1%)
Query: 12 TRETTSTLKAWLNE-HKKNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKE 65
T E + A+ + T + + W N +
Sbjct: 25 TAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPSS 79
>d1y0ea_ c.1.2.5 (A:) Putative N-acetylmannosamine-6-phosphate
2-epimerase NanE {Staphylococcus aureus [TaxId: 1280]}
Length = 222
Score = 27.1 bits (59), Expect = 2.6
Identities = 8/23 (34%), Positives = 9/23 (39%)
Query: 280 SSPLSSVGAVVAAAAAASSGGGS 302
PL S + A AA GG
Sbjct: 16 DEPLHSSFIMSKMALAAYEGGAV 38
>d1m0da_ c.52.1.17 (A:) Endonuclease I (Holliday junction
resolvase) {Bacteriophage T7 [TaxId: 10760]}
Length = 129
Score = 26.3 bits (58), Expect = 2.7
Identities = 8/42 (19%), Positives = 18/42 (42%)
Query: 28 KNPYPTKGEKIMLAIITKMTLTQVSTWFANARRRLKKENKMT 69
K + + K L I + + F+++R +L K + +
Sbjct: 51 KGLWESDDRKKHLLIREQHPELDIRIVFSSSRTKLYKGSPTS 92
>d1zhxa1 d.338.1.1 (A:2-434) Oxysterol-binding protein homolog 4,
KES1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 433
Score = 26.5 bits (58), Expect = 4.9
Identities = 4/36 (11%), Positives = 12/36 (33%), Gaps = 2/36 (5%)
Query: 58 ARRRLKKENKMTWEPR--NRVEDEDNNNDDHSDGRK 91
R+ ++ ++W+ R + + K
Sbjct: 344 ELRKEEEAKGISWQRRWFKDFDYSVTPEEGALVPEK 379
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.308 0.126 0.376
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,252,038
Number of extensions: 57880
Number of successful extensions: 131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 128
Number of HSP's successfully gapped: 36
Length of query: 341
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 255
Effective length of database: 1,226,816
Effective search space: 312838080
Effective search space used: 312838080
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.7 bits)
S2: 53 (24.4 bits)