BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy5915
         (89 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2NRB|A Chain A, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
 pdb|2NRB|B Chain B, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
 pdb|2NRB|C Chain C, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
 pdb|2NRB|D Chain D, C28s Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
          Length = 481

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481


>pdb|2NRC|A Chain A, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
 pdb|2NRC|B Chain B, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
 pdb|2NRC|C Chain C, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
 pdb|2NRC|D Chain D, C28a Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
          Length = 481

 Score = 65.1 bits (157), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481


>pdb|1O9L|A Chain A, Succinate:coenzyme-A Transferase (Pig Heart)
 pdb|1O9L|B Chain B, Succinate:coenzyme-A Transferase (Pig Heart)
 pdb|1O9L|C Chain C, Succinate:coenzyme-A Transferase (Pig Heart)
 pdb|1O9L|D Chain D, Succinate:coenzyme-A Transferase (Pig Heart)
 pdb|1OOY|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
 pdb|1OOY|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
 pdb|3K6M|A Chain A, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
           Transferase From Pig Heart.
 pdb|3K6M|D Chain D, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
           Transferase From Pig Heart.
 pdb|3K6M|C Chain C, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
           Transferase From Pig Heart.
 pdb|3K6M|B Chain B, Dynamic Domains Of Succinyl-Coa:3-Ketoacid-Coenzyme A
           Transferase From Pig Heart
          Length = 481

 Score = 65.1 bits (157), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481


>pdb|3OXO|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           Covalently Bound To Coa
 pdb|3OXO|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           Covalently Bound To Coa
 pdb|3OXO|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           Covalently Bound To Coa
 pdb|3OXO|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           Covalently Bound To Coa
 pdb|3OXO|E Chain E, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           Covalently Bound To Coa
 pdb|3OXO|F Chain F, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           Covalently Bound To Coa
 pdb|3OXO|G Chain G, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           Covalently Bound To Coa
 pdb|3OXO|H Chain H, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           Covalently Bound To Coa
          Length = 488

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 29/51 (56%), Positives = 40/51 (78%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM Q+E
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQLE 480


>pdb|3DLX|A Chain A, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
 pdb|3DLX|B Chain B, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
 pdb|3DLX|C Chain C, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
 pdb|3DLX|D Chain D, Crystal Structure Of Human 3-Oxoacid Coa Transferase 1
          Length = 489

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 28/50 (56%), Positives = 39/50 (78%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
           +++   VF+VDK++GLTLIE+ EG+ V ++  STGCDFAVSP L PM Q+
Sbjct: 431 IITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 480


>pdb|1OOZ|A Chain A, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
           From Pig Heart
 pdb|1OOZ|B Chain B, Deletion Mutant Of Succinyl-coa:3-ketoacid Coa Transferase
           From Pig Heart
 pdb|1OPE|A Chain A, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
 pdb|1OPE|B Chain B, Deletion Mutant Of Succinyl-Coa:3-Ketoacid Coa Transferase
           From Pig Heart
          Length = 475

 Score = 64.3 bits (155), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 424 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 475


>pdb|1M3E|A Chain A, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           (Selenomethionine)
 pdb|1M3E|B Chain B, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           (Selenomethionine)
 pdb|1M3E|C Chain C, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           (Selenomethionine)
 pdb|1M3E|D Chain D, Succinyl-Coa:3-Ketoacid Coa Transferase From Pig Heart
           (Selenomethionine)
          Length = 481

 Score = 62.4 bits (150), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 29/52 (55%), Positives = 39/52 (75%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L P  QV T
Sbjct: 430 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPXQQVTT 481


>pdb|2AHV|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
           O157:h7 (Ydif)- Thioester Complex With Coa- 1
 pdb|2AHV|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
           O157:h7 (Ydif)- Thioester Complex With Coa- 1
 pdb|2AHV|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
           O157:h7 (Ydif)- Thioester Complex With Coa- 1
 pdb|2AHV|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
           O157:h7 (Ydif)- Thioester Complex With Coa- 1
 pdb|2AHW|A Chain A, Crystal Structure Of Acyl-Coa Transferase From E. Coli
           O157:h7 (Ydif)- Thioester Complex With Coa- 2
 pdb|2AHW|B Chain B, Crystal Structure Of Acyl-Coa Transferase From E. Coli
           O157:h7 (Ydif)- Thioester Complex With Coa- 2
 pdb|2AHW|C Chain C, Crystal Structure Of Acyl-Coa Transferase From E. Coli
           O157:h7 (Ydif)- Thioester Complex With Coa- 2
 pdb|2AHW|D Chain D, Crystal Structure Of Acyl-Coa Transferase From E. Coli
           O157:h7 (Ydif)- Thioester Complex With Coa- 2
          Length = 531

 Score = 29.3 bits (64), Expect = 0.63,   Method: Compositional matrix adjust.
 Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)

Query: 49  KERGLTLIEIAEGVEVPEIIVSTGCDF--AVSPDLKPM 84
           KE GL LIEIA GV++ + I+    DF   +SP+LK M
Sbjct: 476 KEDGLHLIEIAPGVDLQKDILDK-MDFTPVISPELKLM 512


>pdb|3CDK|B Chain B, Crystal Structure Of The Co-Expressed Succinyl-Coa
           Transferase A And B Complex From Bacillus Subtilis
 pdb|3CDK|D Chain D, Crystal Structure Of The Co-Expressed Succinyl-Coa
           Transferase A And B Complex From Bacillus Subtilis
          Length = 219

 Score = 27.7 bits (60), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)

Query: 43  CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVS 78
            VF+    R +TL E+ +GV + E+   T  DFAVS
Sbjct: 179 AVFDFVNGR-MTLTELQDGVTIEEVYEKTEADFAVS 213


>pdb|2AHU|A Chain A, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
           From Escherichia Coli O157:h7.
 pdb|2AHU|B Chain B, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
           From Escherichia Coli O157:h7.
 pdb|2AHU|C Chain C, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
           From Escherichia Coli O157:h7.
 pdb|2AHU|D Chain D, Crystal Structure Of Acyl-coa Transferase (ydif) Apoenzyme
           From Escherichia Coli O157:h7
          Length = 531

 Score = 27.3 bits (59), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 3/36 (8%)

Query: 49  KERGLTLIEIAEGVEVPEIIVSTGCDF--AVSPDLK 82
           KE GL LIEIA GV++ + I+    DF   +SP+LK
Sbjct: 476 KEDGLHLIEIAPGVDLQKDILDK-XDFTPVISPELK 510


>pdb|4EHI|A Chain A, An X-Ray Crystal Structure Of A Putative Bifunctional
          Phosphoribosylaminoimidazolecarboxamide
          FormyltransferaseIMP Cyclohydrolase
 pdb|4EHI|B Chain B, An X-Ray Crystal Structure Of A Putative Bifunctional
          Phosphoribosylaminoimidazolecarboxamide
          FormyltransferaseIMP Cyclohydrolase
          Length = 534

 Score = 26.9 bits (58), Expect = 2.7,   Method: Composition-based stats.
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 31 LTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEI 67
          L  L  ++LS    F++ KE G+ +IE+++  + PE+
Sbjct: 44 LENLGFEILSTGGTFKLLKENGIKVIEVSDFTKSPEL 80


>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
 pdb|4A5W|B Chain B, Crystal Structure Of C5b6
 pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
          Length = 913

 Score = 25.8 bits (55), Expect = 6.3,   Method: Composition-based stats.
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 3/58 (5%)

Query: 26  PTRLGLTALSSDVLSRDCVFEVDKERGLTLI---EIAEGVEVPEIIVSTGCDFAVSPD 80
           P R G           DC F + +  G   I   E  + V++PEI   +GC   V P+
Sbjct: 573 PQRGGKRCEGEKRQEEDCTFSIMENNGQPCINDDEEMKEVDLPEIEADSGCPQPVPPE 630


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.314    0.134    0.382 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,655,200
Number of Sequences: 62578
Number of extensions: 85768
Number of successful extensions: 155
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 146
Number of HSP's gapped (non-prelim): 12
length of query: 89
length of database: 14,973,337
effective HSP length: 56
effective length of query: 33
effective length of database: 11,468,969
effective search space: 378475977
effective search space used: 378475977
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 45 (21.9 bits)