BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5915
(89 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|B2GV06|SCOT1_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Rattus norvegicus GN=Oxct1 PE=1 SV=1
Length = 520
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
+++ VF+VDK+ GLTLIE+ EG+ V +I STGCDFAVSP+L PM Q+ T
Sbjct: 469 IITEKGVFDVDKKNGLTLIELWEGLTVDDIRKSTGCDFAVSPNLMPMQQIST 520
>sp|Q9D0K2|SCOT1_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Mus musculus GN=Oxct1 PE=1 SV=1
Length = 520
Score = 64.7 bits (156), Expect = 1e-10, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
+++ VF+VDK+ GLTLIE+ EG+ V +I STGCDFAVSP+L PM Q+ T
Sbjct: 469 IITEKGVFDVDKKNGLTLIELWEGLTVDDIKKSTGCDFAVSPNLMPMQQIST 520
>sp|P55809|SCOT1_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Homo sapiens GN=OXCT1 PE=1 SV=1
Length = 520
Score = 64.3 bits (155), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 28/50 (56%), Positives = 39/50 (78%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
+++ VF+VDK++GLTLIE+ EG+ V ++ STGCDFAVSP L PM Q+
Sbjct: 469 IITEKAVFDVDKKKGLTLIELWEGLTVDDVQKSTGCDFAVSPKLMPMQQI 518
>sp|Q29551|SCOT1_PIG Succinyl-CoA:3-ketoacid coenzyme A transferase 1, mitochondrial
OS=Sus scrofa GN=OXCT1 PE=1 SV=2
Length = 520
Score = 63.5 bits (153), Expect = 4e-10, Method: Composition-based stats.
Identities = 30/52 (57%), Positives = 39/52 (75%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
+++ VF+VD ++GLTLIE+ EG+ V +I STGCDFAVSP L PM QV T
Sbjct: 469 IITEKAVFDVDSKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 520
>sp|Q9JJN4|SCO2A_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial
OS=Mus musculus GN=Oxct2a PE=2 SV=2
Length = 520
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
+++ VFEV+ +GLTL+E+ EG V +I +T C FAVSP+LKPM Q++
Sbjct: 467 IITEKAVFEVNHSKGLTLVELWEGSSVDDIKATTACSFAVSPNLKPMQQIK 517
>sp|Q9ESL0|SCO2B_MOUSE Succinyl-CoA:3-ketoacid coenzyme A transferase 2B, mitochondrial
OS=Mus musculus GN=Oxct2b PE=2 SV=1
Length = 520
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
+++ VFEV+ +GLTL+E+ EG V +I +T C FAVSP+LKPM Q++
Sbjct: 467 IITEKAVFEVNHSKGLTLVELWEGSSVDDIKATTACSFAVSPNLKPMQQIK 517
>sp|Q5XIJ9|SCO2A_RAT Succinyl-CoA:3-ketoacid coenzyme A transferase 2A, mitochondrial
OS=Rattus norvegicus GN=Oxct2a PE=1 SV=1
Length = 520
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
+++ VFEVD+ +GL L+E+ EG + E+ +TGC F V P+LKPM Q+++
Sbjct: 467 IITEKAVFEVDRSKGLKLVELWEGSSLDEVKATTGCSFKVCPNLKPMQQIKS 518
>sp|Q9BYC2|SCOT2_HUMAN Succinyl-CoA:3-ketoacid coenzyme A transferase 2, mitochondrial
OS=Homo sapiens GN=OXCT2 PE=2 SV=2
Length = 517
Score = 53.9 bits (128), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 37/50 (74%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQV 87
+++ VF+V +++ LTL E+ EG+ V +I STGC FAVSP+L+PM QV
Sbjct: 466 IITEKAVFDVHRKKELTLRELWEGLTVDDIKKSTGCAFAVSPNLRPMQQV 515
>sp|Q09450|SCOT_CAEEL Probable succinyl-CoA:3-ketoacid coenzyme A transferase,
mitochondrial OS=Caenorhabditis elegans GN=C05C10.3 PE=3
SV=1
Length = 521
Score = 47.8 bits (112), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/51 (45%), Positives = 34/51 (66%)
Query: 36 SDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQ 86
S +++ VF+VD + GLTLIE+ + + V +I T C F +S +LKPMGQ
Sbjct: 465 SRIITDMAVFDVDTKNGLTLIEVRKDLTVDDIKKLTACKFEISENLKPMGQ 515
>sp|Q54JD9|SCOT_DICDI Probable succinyl-CoA:3-ketoacid coenzyme A transferase,
mitochondrial OS=Dictyostelium discoideum GN=oxct1 PE=3
SV=1
Length = 509
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 38 VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVE 88
+++ VF+V + L LIE+ +G V +I T +F VS +LKP+ QVE
Sbjct: 459 IITELAVFDVVNGK-LELIEVVDGQTVDDIKSKTEAEFTVSKNLKPLQQVE 508
>sp|Q9A7Z2|BIOD_CAUCR ATP-dependent dethiobiotin synthetase BioD OS=Caulobacter
crescentus (strain ATCC 19089 / CB15) GN=bioD PE=3 SV=1
Length = 219
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 1 REQIRPGRESNPRPSAYKADALPTKPTRLGLTALSSDVLSRDCV-FEVDKERGLTLIEIA 59
R RP ++ P Y+A P RL L D L DC + + ++ GL LIE A
Sbjct: 58 RALGRPEAWTDVSPRRYRAPLAPNIAARLEGDTLQMDDLITDCREWLIGRDVGLALIEGA 117
Query: 60 EGVEVPEIIVSTGCDFAVSPDL 81
GV P +T D V+ L
Sbjct: 118 GGVMSPMTDEATNLDLMVALGL 139
>sp|B8GVE1|BIOD_CAUCN ATP-dependent dethiobiotin synthetase BioD OS=Caulobacter
crescentus (strain NA1000 / CB15N) GN=bioD PE=3 SV=1
Length = 219
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Query: 1 REQIRPGRESNPRPSAYKADALPTKPTRLGLTALSSDVLSRDCV-FEVDKERGLTLIEIA 59
R RP ++ P Y+A P RL L D L DC + + ++ GL LIE A
Sbjct: 58 RALGRPEAWTDVSPRRYRAPLAPNIAARLEGDTLQMDDLITDCREWLIGRDVGLALIEGA 117
Query: 60 EGVEVPEIIVSTGCDFAVSPDL 81
GV P +T D V+ L
Sbjct: 118 GGVMSPMTDEATNLDLMVALGL 139
>sp|Q8X5X6|YDIF_ECO57 Acetate CoA-transferase YdiF OS=Escherichia coli O157:H7 GN=ydiF
PE=1 SV=1
Length = 531
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 19/38 (50%), Positives = 25/38 (65%), Gaps = 3/38 (7%)
Query: 49 KERGLTLIEIAEGVEVPEIIVSTGCDF--AVSPDLKPM 84
KE GL LIEIA GV++ + I+ DF +SP+LK M
Sbjct: 476 KEDGLHLIEIAPGVDLQKDILDK-MDFTPVISPELKLM 512
>sp|P37766|YDIF_ECOLI Acetate CoA-transferase YdiF OS=Escherichia coli (strain K12)
GN=ydiF PE=3 SV=3
Length = 531
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 39 LSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDF--AVSPDLKPM 84
++ VF + KE GL LIEIA GV++ + I+ DF +SP+LK M
Sbjct: 467 ITERAVFTL-KEDGLHLIEIAPGVDLQKDILDK-MDFTPVISPELKLM 512
>sp|P0C7I8|SCOB_XANCP Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Xanthomonas campestris pv. campestris (strain ATCC
33913 / NCPPB 528 / LMG 568) GN=lpsJ PE=3 SV=1
Length = 213
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 43 CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAV 77
VF+V + GL L+E AEGV + E+ TG F V
Sbjct: 176 AVFDV-TDGGLVLVEAAEGVGLEELRAKTGVAFVV 209
>sp|B0RVK3|SCOB_XANCB Succinyl-CoA:3-ketoacid coenzyme A transferase subunit B
OS=Xanthomonas campestris pv. campestris (strain B100)
GN=lpsJ PE=3 SV=1
Length = 213
Score = 28.9 bits (63), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 43 CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAV 77
VF+V + GL L+E AEGV + E+ TG F V
Sbjct: 176 AVFDV-TDGGLVLVEAAEGVGLEELRAKTGVAFVV 209
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.314 0.134 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,483,255
Number of Sequences: 539616
Number of extensions: 1212135
Number of successful extensions: 2374
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 2364
Number of HSP's gapped (non-prelim): 17
length of query: 89
length of database: 191,569,459
effective HSP length: 59
effective length of query: 30
effective length of database: 159,732,115
effective search space: 4791963450
effective search space used: 4791963450
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 55 (25.8 bits)