Query psy5915
Match_columns 89
No_of_seqs 128 out of 1019
Neff 4.8
Searched_HMMs 29240
Date Fri Aug 16 21:42:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5915.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5915hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3k6m_A Succinyl-COA:3-ketoacid 99.8 7.7E-20 2.6E-24 147.4 6.5 71 19-89 411-481 (481)
2 3rrl_B Succinyl-COA:3-ketoacid 99.7 3E-18 1E-22 125.4 7.7 59 19-78 148-206 (207)
3 1poi_B Glutaconate coenzyme A- 99.7 4.8E-17 1.6E-21 122.2 7.4 66 20-86 155-237 (260)
4 2ahu_A Putative enzyme YDIF; C 99.6 1.5E-15 5.2E-20 123.0 3.8 67 19-86 441-514 (531)
5 1xr4_A Putative citrate lyase 98.4 2.4E-08 8.3E-13 80.7 -1.8 61 19-81 418-483 (509)
6 2hj0_A Putative citrate lyase, 98.0 7.7E-07 2.6E-11 72.2 -0.8 61 19-82 422-488 (519)
7 2g39_A Acetyl-COA hydrolase; c 97.3 1.3E-05 4.6E-10 64.6 -2.3 41 19-62 407-447 (497)
8 3d3u_A 4-hydroxybutyrate COA-t 97.2 2E-05 6.8E-10 62.1 -2.8 41 19-62 367-410 (439)
9 3gk7_A 4-hydroxybutyrate COA-t 97.2 3.7E-05 1.3E-09 61.5 -1.3 59 19-78 371-437 (448)
10 2nvv_A Acetyl-COA hydrolase/tr 97.1 4E-05 1.4E-09 61.9 -1.9 41 19-62 403-443 (506)
11 2oas_A ATOA, 4-hydroxybutyrate 96.6 0.00077 2.6E-08 53.2 1.9 29 19-47 361-392 (436)
12 3qli_A Coenzyme A transferase; 96.5 0.0014 4.9E-08 52.6 3.0 29 19-47 392-421 (455)
13 3eh7_A 4-hydroxybutyrate COA-t 95.0 0.0091 3.1E-07 47.3 1.9 29 19-47 370-401 (434)
14 4eu9_A Succinyl-COA:acetate co 85.6 0.44 1.5E-05 38.1 2.6 28 20-47 414-441 (514)
15 4fu0_A D-alanine--D-alanine li 46.3 24 0.00083 25.8 4.2 28 48-75 303-336 (357)
16 1vig_A Vigilin; RNA-binding pr 41.0 15 0.0005 21.4 1.8 20 61-80 24-43 (71)
17 2hh2_A KH-type splicing regula 40.6 14 0.00047 23.3 1.8 20 61-80 26-45 (107)
18 1x4m_A FAR upstream element bi 38.0 16 0.00054 22.4 1.7 20 61-80 34-53 (94)
19 3n2o_A ADC, biosynthetic argin 37.8 37 0.0013 28.1 4.4 34 43-76 568-601 (648)
20 1dtj_A RNA-binding neurooncolo 37.2 13 0.00044 21.5 1.2 20 61-80 22-41 (76)
21 2axy_A Poly(RC)-binding protei 36.5 11 0.00038 22.0 0.8 20 61-80 24-43 (73)
22 3nzq_A ADC, biosynthetic argin 36.3 41 0.0014 28.0 4.4 34 43-76 585-618 (666)
23 2opv_A KHSRP protein; KH domai 34.3 14 0.00049 22.1 1.1 20 61-80 33-52 (85)
24 1sou_A 5,10-methenyltetrahydro 32.8 24 0.00083 24.3 2.2 22 32-53 166-187 (194)
25 3se7_A VANA; alpha-beta struct 31.7 58 0.002 23.5 4.2 29 48-76 296-330 (346)
26 3sbc_A Peroxiredoxin TSA1; alp 31.6 73 0.0025 22.5 4.6 33 39-71 141-176 (216)
27 2ctl_A Vigilin; K homology typ 30.9 24 0.0008 21.9 1.7 20 61-80 36-55 (97)
28 2hh3_A KH-type splicing regula 30.6 18 0.0006 23.0 1.1 20 61-80 30-49 (106)
29 1x4n_A FAR upstream element bi 29.6 19 0.00066 21.9 1.1 20 61-80 34-53 (92)
30 1e4e_A Vancomycin/teicoplanin 29.3 70 0.0024 22.9 4.3 28 48-75 296-329 (343)
31 1w2w_B 5-methylthioribose-1-ph 29.0 19 0.00067 25.2 1.2 20 28-47 160-179 (191)
32 1zzk_A Heterogeneous nuclear r 28.6 18 0.00063 21.4 0.9 20 61-80 26-45 (82)
33 3i12_A D-alanine-D-alanine lig 28.3 70 0.0024 23.4 4.2 29 48-76 306-340 (364)
34 1wvn_A Poly(RC)-binding protei 28.2 19 0.00066 21.3 0.9 20 61-80 25-44 (82)
35 2dgr_A Ring finger and KH doma 28.2 39 0.0013 20.4 2.4 19 61-79 29-47 (83)
36 2p2r_A Poly(RC)-binding protei 27.5 19 0.00064 20.9 0.7 20 61-80 24-43 (76)
37 1ec6_A RNA-binding protein NOV 26.9 21 0.00071 21.4 0.9 20 61-80 22-41 (87)
38 2ctm_A Vigilin; K homology typ 26.6 31 0.0011 21.3 1.7 20 61-80 36-55 (95)
39 1vkk_A GMF-gamma, GLIA maturat 25.9 69 0.0024 21.2 3.5 31 41-71 42-73 (154)
40 1j5k_A Heterogeneous nuclear r 25.7 23 0.00077 21.4 0.9 20 61-80 33-52 (89)
41 1we8_A Tudor and KH domain con 25.2 26 0.00089 21.8 1.1 20 61-80 34-53 (104)
42 3nzp_A Arginine decarboxylase; 23.6 1E+02 0.0034 25.3 4.6 36 40-76 533-568 (619)
43 1vb5_A Translation initiation 23.0 29 0.00098 25.4 1.2 21 27-47 251-271 (276)
44 2ctk_A Vigilin; K homology typ 22.8 29 0.001 21.8 1.0 20 61-80 36-55 (104)
45 1v6f_A MGMF-beta, GLIA maturat 21.6 89 0.003 20.4 3.3 31 41-71 36-67 (151)
46 3vmm_A Alanine-anticapsin liga 21.0 75 0.0026 24.5 3.2 28 48-75 317-348 (474)
47 2l32_A Small archaeal modifier 20.4 70 0.0024 18.8 2.4 23 54-76 13-35 (74)
No 1
>3k6m_A Succinyl-COA:3-ketoacid-coenzyme A transferase 1, mitochondrial; SCOT, COA transferase, dynamic domain, glycerol, mitochondri transferase; 1.50A {Sus scrofa} PDB: 1m3e_A* 1o9l_A 1ooy_A 2nrc_A 2nrb_A 3oxo_A* 1ooz_A 1ope_A 3dlx_A
Probab=99.79 E-value=7.7e-20 Score=147.43 Aligned_cols=71 Identities=44% Similarity=0.671 Sum_probs=67.0
Q ss_pred cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCceeecCCCCCCCcccC
Q psy5915 19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89 (89)
Q Consensus 19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~va~~l~~m~~~~~ 89 (89)
.+|+++|++|+|+.++|++||||+|||++|++++|+|+|+|||+|+|||+++|||++.+++++++|+|+++
T Consensus 411 ~~Iv~~~~~~~t~~~~v~~vVTE~gV~~l~~~~gl~L~eiapGv~~edv~~~t~~~~~v~~~l~~m~~~~~ 481 (481)
T 3k6m_A 411 HKIMEKCTLPLTGKQCVNRIITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 481 (481)
T ss_dssp BSEESSCSSCCSBSSCCCEEECSSEEEEEETTTEEEEEEECTTCCHHHHHHTCBSCCEEEEEEEECCCCC-
T ss_pred eEEecccccCCCCCCcceEEEcCcEEEEecCCCcEEEEEeCCCCCHHHHHHhcCCceEeCCCcccCCCCCC
Confidence 46899999999999999999999999999767899999999999999999999999999999999999875
No 2
>3rrl_B Succinyl-COA:3-ketoacid-coenzyme A transferase SU; MCSG,PSI-biology, structural genomics, midwest center for ST genomics; 2.29A {Helicobacter pylori} PDB: 3cdk_B
Probab=99.74 E-value=3e-18 Score=125.45 Aligned_cols=59 Identities=20% Similarity=0.342 Sum_probs=55.5
Q ss_pred cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCceeec
Q psy5915 19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVS 78 (89)
Q Consensus 19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~va 78 (89)
.+|+++|++|+|+.++|++||||+|||++ .+++|+|+|+|||+|+|||+++|||+|.++
T Consensus 148 ~kiv~~~~~~~t~~~~v~~vVTe~gV~~l-~~~~l~L~eiapGv~~e~v~~~t~~~~~v~ 206 (207)
T 3rrl_B 148 SKVKKECSLPLTGKGVVHQLITDLAVFEF-SNNAMKLVELQEGVSLDQVKEKTEAEFEVR 206 (207)
T ss_dssp BSEESSCSSCCSBSSCCSEEECSSEEEEE-ETTEEEEEEECTTCCHHHHHHHCCSCCEEC
T ss_pred ceECccccccCCCCCceEEEECCceEEEE-cCCeEEEEEeCCCCCHHHHHHhcCCceEee
Confidence 46899999999999999999999999999 455999999999999999999999999986
No 3
>1poi_B Glutaconate coenzyme A-transferase; COA, glutamate, protein fermentation; 2.50A {Acidaminococcus fermentans} SCOP: c.124.1.3
Probab=99.68 E-value=4.8e-17 Score=122.24 Aligned_cols=66 Identities=14% Similarity=0.169 Sum_probs=59.3
Q ss_pred CccCCCC----------------CCCCCCCCccEEEcCceEEEeccC-CcEEEEEecCCCCHHHHHHhhCCceeecCCCC
Q psy5915 20 DALPTKP----------------TRLGLTALSSDVLSRDCVFEVDKE-RGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLK 82 (89)
Q Consensus 20 ~~~~~Ct----------------lPLTg~~~V~~IITdlaVf~~d~~-~~l~L~ei~pGvt~eeV~~~Tg~~l~va~~l~ 82 (89)
+++++|+ +|||+.+.+++||||+|||+++++ ++|+|+|+|||+|+|||+++|||++.++++++
T Consensus 155 k~V~~v~~vt~~G~~~~~~~r~~~~~t~~r~~~~vVTe~gV~~~~~~~~~l~L~e~~Pgvt~edv~~~t~f~~~v~~~~~ 234 (260)
T 1poi_B 155 RFMNKIDYVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPTSSPEDVLENTGFDLDVSKAVE 234 (260)
T ss_dssp TBCSSCSCCSBCCSTTSTTHHHHTTCCTTCCEEEEEETTEEEEECTTTCCEEEEEECTTCCHHHHHHTCSSCCCCTTCEE
T ss_pred eecccCceeeccCcccccccccccccccCCCCCEEEeCceEEEecCCCCcEEEEEeCCCCCHHHHHHhcCCCeecCCCCC
Confidence 6999999 999988234999999999999665 48999999999999999999999999999888
Q ss_pred CCCc
Q psy5915 83 PMGQ 86 (89)
Q Consensus 83 ~m~~ 86 (89)
|+.
T Consensus 235 -~~~ 237 (260)
T 1poi_B 235 -LEA 237 (260)
T ss_dssp -CCC
T ss_pred -CCC
Confidence 754
No 4
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester, structural genomi montreal-kingston bacterial structural genomics initiative; 1.90A {Escherichia coli} SCOP: c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Probab=99.55 E-value=1.5e-15 Score=123.03 Aligned_cols=67 Identities=31% Similarity=0.485 Sum_probs=61.6
Q ss_pred cCccCCCC-CCCCCC-----CCccEEEcCceEEEeccCCcEEEEEecCCCCHHH-HHHhhCCceeecCCCCCCCc
Q psy5915 19 ADALPTKP-TRLGLT-----ALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPE-IIVSTGCDFAVSPDLKPMGQ 86 (89)
Q Consensus 19 ~~~~~~Ct-lPLTg~-----~~V~~IITdlaVf~~d~~~~l~L~ei~pGvt~ee-V~~~Tg~~l~va~~l~~m~~ 86 (89)
+++|++|+ +|+||. ++|++||||+|||++ .+++|.|+|+|||+|+|+ |+++|||++.+++++++|+.
T Consensus 441 ~kiV~~v~~v~~~G~~~~~~~~v~~vVTE~gV~~l-~~~gl~l~e~apgv~~e~dv~~~t~~~~~v~~~~~~~~~ 514 (531)
T 2ahu_A 441 KKFIRELPEITFSGKIALERGLDVRYITERAVFTL-KEDGLHLIEIAPGVDLQKDILDKMDFTPVISPELKLMDE 514 (531)
T ss_dssp ESEESCCSSCSBCHHHHHHTTCEEEEECSSEEEEE-ETTEEEEEEECTTCCHHHHTGGGSSSCCEEEEEEEECCG
T ss_pred ceECCCCccCCCCCcccccCCCcEEEECCCEEEEe-cCCCceeeeeCCCCCHHHHHHHhcCCCeeecCccccccH
Confidence 56999999 999998 899999999999999 445999999999999998 99999999999988887754
No 5
>1xr4_A Putative citrate lyase alpha chain/citrate-ACP TR; the midwest center for structural genomics, MCSG, structural genomics; 2.37A {Salmonella typhimurium} SCOP: c.124.1.2 c.124.1.2
Probab=98.36 E-value=2.4e-08 Score=80.72 Aligned_cols=61 Identities=5% Similarity=-0.046 Sum_probs=54.5
Q ss_pred cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCC-----CCHHHHHHhhCCceeecCCC
Q psy5915 19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEG-----VEVPEIIVSTGCDFAVSPDL 81 (89)
Q Consensus 19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pG-----vt~eeV~~~Tg~~l~va~~l 81 (89)
++||++|++|+|+.++|+.||||+|||+. ..++.|.|.+++ .+.|++++++...+.+++++
T Consensus 418 skIV~~~~~v~t~~~~V~~iVTE~Gva~~--l~g~~l~Era~~l~iAh~~~e~L~~~a~~~~~~p~~~ 483 (509)
T 1xr4_A 418 PCVVEKVLTTVTPGASVDVLVTDHGIAVN--PARQDLLDNLRAAGVALMTIEQLQQRAEQLTGKPQPI 483 (509)
T ss_dssp ESBCSSCSSCSBCGGGCCEEEETTEEEEC--TTCHHHHHHHHHTTCCCBCHHHHHHHHHHHHCCCCCC
T ss_pred CeEeeCCCCcccCcCeeCEEECCcEEEEc--CCCCCHHHHhhccCCCcCCHHHHHHHHHHhhCCCccC
Confidence 57999999999999999999999999994 348999999998 89999999998888777654
No 6
>2hj0_A Putative citrate lyase, ALFA subunit; alpha beta protein., structural genomics, PSI-2, protein STR initiative; HET: CIT; 2.70A {Streptococcus mutans}
Probab=97.96 E-value=7.7e-07 Score=72.16 Aligned_cols=61 Identities=10% Similarity=0.025 Sum_probs=51.6
Q ss_pred cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEE------ecCCCCHHHHHHhhCCceeecCCCC
Q psy5915 19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIE------IAEGVEVPEIIVSTGCDFAVSPDLK 82 (89)
Q Consensus 19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~e------i~pGvt~eeV~~~Tg~~l~va~~l~ 82 (89)
++||++|++++|+.++|+.||||+|||+. -.++.|.| ++. .+.|++++++...+.+++++.
T Consensus 422 skiV~~~~~vtt~~~~V~~VVTE~Gva~~--l~g~~l~Era~~l~ia~-~~~~~L~~~a~~~~~~~~~~~ 488 (519)
T 2hj0_A 422 PTFVDKVNTVITPGTSVDVVVTEVGIAIN--PNRPDLIEYFKDLKVPQ-LTIEELKEKAYAIVGNPQPIQ 488 (519)
T ss_dssp ESBCSSCSSCSBCGGGCCEEECSSCEEEC--TTCHHHHHHTTTCSSCE-ECHHHHHHHHHHHHCSCCCCC
T ss_pred CeeccCCCCcccCCCCCCEEECCCEEEEC--CCCCCHHHHHHHcCCCc-ccHHHHHHHHHHhhCCCcccC
Confidence 46999999999999999999999999993 23677777 666 899999999988888776653
No 7
>2g39_A Acetyl-COA hydrolase; coenzyme A transferase, structural G PSI, protein structure initiative, midwest center for struc genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: c.124.1.2 c.124.1.2
Probab=97.31 E-value=1.3e-05 Score=64.56 Aligned_cols=41 Identities=12% Similarity=0.103 Sum_probs=36.4
Q ss_pred cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCC
Q psy5915 19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGV 62 (89)
Q Consensus 19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGv 62 (89)
++||+.|+.++|+.++|+.||||+|||++ . ++.+.|.++++
T Consensus 407 skIv~~~~~v~t~~~~v~~vVTE~gva~l-~--G~~~~era~~l 447 (497)
T 2g39_A 407 SSVVPMVSHVDHTEHDVDILVTEQGLADL-R--GLAPRERARVI 447 (497)
T ss_dssp ESEESSCSSCSBCGGGCCEEEETTEEEEC-T--TCCHHHHHHHH
T ss_pred CeEeeCCCCeecCCCceeEEECCCEEEEc-c--CCCHHHHHHHH
Confidence 46999999999999999999999999999 3 77777777766
No 8
>3d3u_A 4-hydroxybutyrate COA-transferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.80A {Porphyromonas gingivalis}
Probab=97.16 E-value=2e-05 Score=62.06 Aligned_cols=41 Identities=20% Similarity=0.136 Sum_probs=32.3
Q ss_pred cCccCCC---CCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCC
Q psy5915 19 ADALPTK---PTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGV 62 (89)
Q Consensus 19 ~~~~~~C---tlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGv 62 (89)
.+||++| +++.|..++|+.||||+|||++ . ++.|.|.++++
T Consensus 367 s~iv~~~~~g~~v~~~~~~v~~vVTE~gva~l-~--g~~l~e~a~~l 410 (439)
T 3d3u_A 367 SRIVPILKEGACVTTGRNEVDYVVTEYGVARL-R--GATLRQRAEAL 410 (439)
T ss_dssp ESEESSCC------CCSTTCSEEEETTEEEEC-T--TCCHHHHHHHH
T ss_pred CeEeECccCCCCceeCCCcceEEECCCEEEEe-C--CCCHHHHHHHH
Confidence 4699999 6999999999999999999998 3 77788887776
No 9
>3gk7_A 4-hydroxybutyrate COA-transferase; alpha/beta protein; HET: SPD; 1.85A {Clostridium aminobutyricum} PDB: 3qdq_A*
Probab=97.16 E-value=3.7e-05 Score=61.53 Aligned_cols=59 Identities=17% Similarity=0.094 Sum_probs=49.4
Q ss_pred cCccCCCCC---CCCCCCCccEEEcCceEEEeccCC-----cEEEEEecCCCCHHHHHHhhCCceeec
Q psy5915 19 ADALPTKPT---RLGLTALSSDVLSRDCVFEVDKER-----GLTLIEIAEGVEVPEIIVSTGCDFAVS 78 (89)
Q Consensus 19 ~~~~~~Ctl---PLTg~~~V~~IITdlaVf~~d~~~-----~l~L~ei~pGvt~eeV~~~Tg~~l~va 78 (89)
++||+.|+. ++|..++|+.||||+||+++ ... ...|++++..-..+++++.+...+.++
T Consensus 371 s~IV~~~~~g~~v~t~~~~v~~iVTE~Gva~L-~G~~~~era~~li~iAhp~fr~~L~~~~~~~~~~~ 437 (448)
T 3gk7_A 371 SKIVPFIDHGAAVTTSRNDADYVVTEYGIAEM-KGKSLQDRARALINIAHPDFKDELKAEFEKRFNAA 437 (448)
T ss_dssp ESEESSCCTTCCCSBCTTTCCEEEETTEEEEC-TTCCHHHHHHHHHHTSCGGGHHHHHHHHHHHHSSC
T ss_pred CeEeecCCCCCCceeCcCceEEEEeceEEEEc-cCCCHHHHHHHHHhcCCCcCHHHHHHHHHHhhccc
Confidence 569999999 99999999999999999999 421 255778999999999998887665554
No 10
>2nvv_A Acetyl-COA hydrolase/transferase family protein; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Porphyromonas gingivalis}
Probab=97.07 E-value=4e-05 Score=61.88 Aligned_cols=41 Identities=15% Similarity=0.075 Sum_probs=36.1
Q ss_pred cCccCCCCCCCCCCCCccEEEcCceEEEeccCCcEEEEEecCCC
Q psy5915 19 ADALPTKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGV 62 (89)
Q Consensus 19 ~~~~~~CtlPLTg~~~V~~IITdlaVf~~d~~~~l~L~ei~pGv 62 (89)
++||++|+.+.|..++|+.||||+|||++ . ++.+.|.++++
T Consensus 403 s~iV~~~~~v~~~~~~v~~vVTE~Gva~L-~--G~~~~era~~i 443 (506)
T 2nvv_A 403 SSFVPMVAHHDHSEHSVKVIISEWGVADL-R--GKNPRERAHEI 443 (506)
T ss_dssp ESEESSCSSCSBCTTTCCEEEETTEEEEC-T--TCCHHHHHHHH
T ss_pred CeEEeCCCCcccCCCceeEEECCCEEEEc-c--CCCHHHHHHHH
Confidence 46999999999999999999999999999 3 67777777765
No 11
>2oas_A ATOA, 4-hydroxybutyrate coenzyme A transferase; alpha beta protein, structural genomics, PSI-2, protein STRU initiative; HET: COA; 2.40A {Shewanella oneidensis}
Probab=96.57 E-value=0.00077 Score=53.24 Aligned_cols=29 Identities=3% Similarity=-0.083 Sum_probs=27.4
Q ss_pred cCccCCC---CCCCCCCCCccEEEcCceEEEe
Q psy5915 19 ADALPTK---PTRLGLTALSSDVLSRDCVFEV 47 (89)
Q Consensus 19 ~~~~~~C---tlPLTg~~~V~~IITdlaVf~~ 47 (89)
++||++| +.++|+.++|+.||||+||+++
T Consensus 361 skiv~~~~~g~~v~t~~~~v~~vvTE~Gva~l 392 (436)
T 2oas_A 361 SRIASVLSPGAGVVTTRAHVHYIVTEYGAANL 392 (436)
T ss_dssp ESEESSCCTTCCEEECTTTCCEEEETTEEEEC
T ss_pred CEEeeccCCCCCcccCcccCCEEECCCEEEEC
Confidence 4699999 9999999999999999999988
No 12
>3qli_A Coenzyme A transferase; COEN transferase; 1.90A {Yersinia pestis} PDB: 3qlk_A 3s8d_A
Probab=96.49 E-value=0.0014 Score=52.61 Aligned_cols=29 Identities=3% Similarity=0.008 Sum_probs=26.5
Q ss_pred cCccCCCCCCC-CCCCCccEEEcCceEEEe
Q psy5915 19 ADALPTKPTRL-GLTALSSDVLSRDCVFEV 47 (89)
Q Consensus 19 ~~~~~~CtlPL-Tg~~~V~~IITdlaVf~~ 47 (89)
.+||+.|++|+ |+.++|+.||||+||+++
T Consensus 392 s~Iv~~~~~~vtt~~~~v~~vvTE~Gva~l 421 (455)
T 3qli_A 392 SRIIPRIDGPVTTPRIDTHYIVTEFGAVNL 421 (455)
T ss_dssp ESEESCCSSSCSBCTTTCCEEEETTEEEEC
T ss_pred CeEeccCCCCcccCcccccEEEeccEEEEC
Confidence 56999999886 699999999999999998
No 13
>3eh7_A 4-hydroxybutyrate COA-transferase; citrate lyase, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.05A {Porphyromonas gingivalis}
Probab=94.98 E-value=0.0091 Score=47.33 Aligned_cols=29 Identities=10% Similarity=0.077 Sum_probs=27.3
Q ss_pred cCccCCCCC---CCCCCCCccEEEcCceEEEe
Q psy5915 19 ADALPTKPT---RLGLTALSSDVLSRDCVFEV 47 (89)
Q Consensus 19 ~~~~~~Ctl---PLTg~~~V~~IITdlaVf~~ 47 (89)
++||++|+. +.|..++|+.||||+|||++
T Consensus 370 s~iv~~~~~g~~v~~~~~~v~~vVTE~Gva~L 401 (434)
T 3eh7_A 370 SRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQL 401 (434)
T ss_dssp ESEESSCCTTCCEEECTTTCCEEEETTEEEEC
T ss_pred CeEeeCCCCCCCceeCccceeEEEcccEEEEC
Confidence 569999999 99999999999999999997
No 14
>4eu9_A Succinyl-COA:acetate coenzyme A transferase; HET: COA; 1.48A {Acetobacter aceti} PDB: 4eua_A* 4eu3_A* 4eu4_A* 4eu5_A* 4eu6_A* 4eu7_A* 4eu8_A* 4eub_A* 4euc_A* 4eud_A*
Probab=85.62 E-value=0.44 Score=38.11 Aligned_cols=28 Identities=4% Similarity=0.027 Sum_probs=26.5
Q ss_pred CccCCCCCCCCCCCCccEEEcCceEEEe
Q psy5915 20 DALPTKPTRLGLTALSSDVLSRDCVFEV 47 (89)
Q Consensus 20 ~~~~~CtlPLTg~~~V~~IITdlaVf~~ 47 (89)
+||+.|+..-|....|+.||||.||.++
T Consensus 414 ~ivp~~~~v~~~~~~v~~vVTE~Gva~L 441 (514)
T 4eu9_A 414 AIVPMAAHVDHIMQDAQIFVTEQGLADL 441 (514)
T ss_dssp SEESSCSSCSBCGGGCCEEEETTEEEEC
T ss_pred ccccCCCCccCCCCcCCEEEcCCEEEEe
Confidence 5899999999999999999999999998
No 15
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=46.28 E-value=24 Score=25.82 Aligned_cols=28 Identities=18% Similarity=0.424 Sum_probs=20.7
Q ss_pred ccCCcEEEEEec--CCCCH----HHHHHhhCCce
Q psy5915 48 DKERGLTLIEIA--EGVEV----PEIIVSTGCDF 75 (89)
Q Consensus 48 d~~~~l~L~ei~--pGvt~----eeV~~~Tg~~l 75 (89)
|++|++++.|+- ||.|. -...+++|.++
T Consensus 303 ~~dg~~~vlEvNt~PG~t~~S~~p~~~~~~G~~~ 336 (357)
T 4fu0_A 303 TPSGEIVFNEVNTIPGFTSHSRYPNMMKGIGLSF 336 (357)
T ss_dssp CTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCH
T ss_pred eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCcCH
Confidence 566789999998 88873 45566778765
No 16
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=41.01 E-value=15 Score=21.44 Aligned_cols=20 Identities=20% Similarity=0.371 Sum_probs=18.1
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 24 G~~I~~I~e~tg~~I~i~~~ 43 (71)
T 1vig_A 24 GANINRIKDQYKVSVRIPPD 43 (71)
T ss_dssp CCHHHHHHHHTCCEEECCCC
T ss_pred CccHHHHHHHHCCEEEECCC
Confidence 78899999999999999864
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=40.61 E-value=14 Score=23.30 Aligned_cols=20 Identities=30% Similarity=0.315 Sum_probs=18.2
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.|+++
T Consensus 26 G~~Ik~I~~~TGa~I~I~~~ 45 (107)
T 2hh2_A 26 GENVKAINQQTGAFVEISRQ 45 (107)
T ss_dssp TCHHHHHHHHSSSEEEECCC
T ss_pred cHHHHHHHHHhCCEEEEcCc
Confidence 78899999999999999865
No 18
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=38.02 E-value=16 Score=22.39 Aligned_cols=20 Identities=15% Similarity=0.356 Sum_probs=18.3
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 34 G~~Ik~I~~~tga~I~I~~~ 53 (94)
T 1x4m_A 34 GETIKQLQERAGVKMVMIQD 53 (94)
T ss_dssp SSHHHHHHHHHTSEEEECCS
T ss_pred CHHHHHHHHHHCCeEEecCC
Confidence 88999999999999999865
No 19
>3n2o_A ADC, biosynthetic arginine decarboxylase; lyase; HET: PLP; 2.30A {Vibrio vulnificus}
Probab=37.82 E-value=37 Score=28.11 Aligned_cols=34 Identities=21% Similarity=0.260 Sum_probs=28.4
Q ss_pred eEEEeccCCcEEEEEecCCCCHHHHHHhhCCcee
Q psy5915 43 CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFA 76 (89)
Q Consensus 43 aVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~ 76 (89)
..+.+|++|++.+..+.+|=|++||+...+++..
T Consensus 568 v~v~~~~~g~~~~~~~~~g~t~~~~l~~~~y~~~ 601 (648)
T 3n2o_A 568 VVVNVGDQGEINIDFINEGDTVEDMMRYVHIDVD 601 (648)
T ss_dssp EEEEECTTSCEEEEEEECCCBHHHHHHHTTCCHH
T ss_pred EEEEEcCCCCEEEEEeecCCCHHHHHHhcCCCHH
Confidence 4455666789999999999999999999988653
No 20
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=37.16 E-value=13 Score=21.50 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.8
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 22 G~~Ik~I~~~tga~I~i~~~ 41 (76)
T 1dtj_A 22 GKTLVEYQELTGARIQISKK 41 (76)
T ss_dssp THHHHHHHHHHCCEEEECCT
T ss_pred chHHHHHHHHhCCEEEECcC
Confidence 67889999999999999864
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=36.52 E-value=11 Score=22.05 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.9
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 24 G~~Ik~I~~~tga~I~i~~~ 43 (73)
T 2axy_A 24 GESVKKMREESGARINISEG 43 (73)
T ss_dssp GHHHHHHHHHHCCEEEECSS
T ss_pred CHHHHHHHHHHCCEEEEecC
Confidence 67889999999999999865
No 22
>3nzq_A ADC, biosynthetic arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; 3.10A {Escherichia coli}
Probab=36.25 E-value=41 Score=27.98 Aligned_cols=34 Identities=15% Similarity=0.033 Sum_probs=28.4
Q ss_pred eEEEeccCCcEEEEEecCCCCHHHHHHhhCCcee
Q psy5915 43 CVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFA 76 (89)
Q Consensus 43 aVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~ 76 (89)
..+.+|++|++.+..+.+|=|++||+...+++..
T Consensus 585 v~v~~~~~g~~~~~~~~~g~t~~~vl~~~~y~~~ 618 (666)
T 3nzq_A 585 VDVFVFPDGSVEVELSDEGDTVADMLQYVQLDPK 618 (666)
T ss_dssp EEEEECTTSCEEEEEEECCCBHHHHHHHTTCCHH
T ss_pred EEEEEcCCCCEEEEEeecCCCHHHHHHhcCCCHH
Confidence 3455666788999999999999999999998753
No 23
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=34.34 E-value=14 Score=22.05 Aligned_cols=20 Identities=15% Similarity=0.345 Sum_probs=17.9
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.+.++
T Consensus 33 G~~Ik~I~~~tga~I~i~~~ 52 (85)
T 2opv_A 33 GETIKQLQERAGVKMILIQD 52 (85)
T ss_dssp THHHHHHHHHHTCEEEECSS
T ss_pred CHHHHHHHHHHCCEEEEcCC
Confidence 77899999999999999864
No 24
>1sou_A 5,10-methenyltetrahydrofolate synthetase; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium; NMR {Aquifex aeolicus} SCOP: c.124.1.6
Probab=32.78 E-value=24 Score=24.33 Aligned_cols=22 Identities=14% Similarity=0.132 Sum_probs=17.1
Q ss_pred CCCccEEEcCceEEEeccCCcE
Q psy5915 32 TALSSDVLSRDCVFEVDKERGL 53 (89)
Q Consensus 32 ~~~V~~IITdlaVf~~d~~~~l 53 (89)
.-.++.|||+.+++.+...+++
T Consensus 166 Di~ld~iiTe~~~~~~~~~~~~ 187 (194)
T 1sou_A 166 DIPVDVLVTEKNVRRLRDGRSL 187 (194)
T ss_dssp CCCCSEEECSSCEEESCCCCCC
T ss_pred cccCCEEEECCeEEEecCCCcc
Confidence 4477999999999999544454
No 25
>3se7_A VANA; alpha-beta structure, D-alanine-D-lactate ligase, ligase; HET: ATP; 3.07A {}
Probab=31.70 E-value=58 Score=23.52 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=20.5
Q ss_pred ccCCcEEEEEec--CCCCH----HHHHHhhCCcee
Q psy5915 48 DKERGLTLIEIA--EGVEV----PEIIVSTGCDFA 76 (89)
Q Consensus 48 d~~~~l~L~ei~--pGvt~----eeV~~~Tg~~l~ 76 (89)
|+++++++.|+. ||.|. ....+++|.++.
T Consensus 296 ~~~g~~~vlEiN~rPG~t~~s~~p~~~~~~G~~~~ 330 (346)
T 3se7_A 296 TEDGKVVLNEVNTFPGMTSYSRYPRMMTAAGLSRA 330 (346)
T ss_dssp CTTSCEEEEEEESSCCCSTTCHHHHHHHHTTCCHH
T ss_pred eCCCCEEEEEEeCCCCCCcccHHHHHHHHhCCCHH
Confidence 445679999999 88753 455667887653
No 26
>3sbc_A Peroxiredoxin TSA1; alpha-beta fold, peroxidase, cytosol, oxidoreductase; 2.80A {Saccharomyces cerevisiae}
Probab=31.56 E-value=73 Score=22.55 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=25.8
Q ss_pred EcCceEEEeccCCcEEEEEecC---CCCHHHHHHhh
Q psy5915 39 LSRDCVFEVDKERGLTLIEIAE---GVEVPEIIVST 71 (89)
Q Consensus 39 ITdlaVf~~d~~~~l~L~ei~p---Gvt~eeV~~~T 71 (89)
++-+++|=+|++|.++..++.| |-+++||++..
T Consensus 141 ~~~R~tFiID~~G~Ir~~~v~~~~~grn~dEiLr~l 176 (216)
T 3sbc_A 141 VALRGLFIIDPKGVIRHITINDLPVGRNVDEALRLV 176 (216)
T ss_dssp EECEEEEEECTTSBEEEEEEECTTBCCCHHHHHHHH
T ss_pred ceeeEEEEECCCCeEEEEEEcCCCCCCCHHHHHHHH
Confidence 4568999999999888888776 56778876543
No 27
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=30.90 E-value=24 Score=21.88 Aligned_cols=20 Identities=10% Similarity=0.275 Sum_probs=18.2
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|.++.+|++.||+.+.++++
T Consensus 36 G~~Ik~I~~etg~~I~i~~~ 55 (97)
T 2ctl_A 36 GAVITQIRLEHDVNIQFPDK 55 (97)
T ss_dssp SCHHHHHHHHHTCEEECCCT
T ss_pred chhHHHHHHHHCCEEEecCC
Confidence 88999999999999999864
No 28
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=30.58 E-value=18 Score=22.98 Aligned_cols=20 Identities=20% Similarity=0.322 Sum_probs=17.9
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|.++.+|++.||+.+.|+++
T Consensus 30 G~~Ik~I~~~TGakI~I~~~ 49 (106)
T 2hh3_A 30 GEMIKKIQNDAGVRIQFKQD 49 (106)
T ss_dssp THHHHHHHHHHTCEEEECSS
T ss_pred cHHHHHHHHHHCcEEEEecC
Confidence 77899999999999999754
No 29
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=29.64 E-value=19 Score=21.89 Aligned_cols=20 Identities=30% Similarity=0.808 Sum_probs=18.2
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 34 G~~Ik~I~~~tga~I~I~~~ 53 (92)
T 1x4n_A 34 GEQISRIQQESGCKIQIAPD 53 (92)
T ss_dssp SHHHHHHHHHSCCEEEECSC
T ss_pred chHHHHHHHHhCCEEEEcCC
Confidence 78899999999999999865
No 30
>1e4e_A Vancomycin/teicoplanin A-type resistance protein; ligase, cell WALL, antibiotic resistance, membrane, peptidog synthesis; HET: ADP PHY; 2.5A {Enterococcus faecium} SCOP: c.30.1.2 d.142.1.1 PDB: 1e4e_B*
Probab=29.30 E-value=70 Score=22.95 Aligned_cols=28 Identities=18% Similarity=0.464 Sum_probs=19.8
Q ss_pred ccCCcEEEEEecC--CCC----HHHHHHhhCCce
Q psy5915 48 DKERGLTLIEIAE--GVE----VPEIIVSTGCDF 75 (89)
Q Consensus 48 d~~~~l~L~ei~p--Gvt----~eeV~~~Tg~~l 75 (89)
|+++++++.|+.| |.| ...+.+.+|.++
T Consensus 296 ~~~g~~~viEiN~rpg~t~~s~~p~~~~~~G~~~ 329 (343)
T 1e4e_A 296 QDNGRIVLNEVNTLPGFTSYSRYPRMMAAAGISL 329 (343)
T ss_dssp CTTCCEEEEEEESSCCCSTTCHHHHHHHHTTCCH
T ss_pred eCCCCEEEEEeeCCCCCCcccHHHHHHHHhCCCH
Confidence 3567899999984 665 355666778775
No 31
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5
Probab=29.01 E-value=19 Score=25.19 Aligned_cols=20 Identities=15% Similarity=0.313 Sum_probs=15.9
Q ss_pred CCCCCCCccEEEcCceEEEe
Q psy5915 28 RLGLTALSSDVLSRDCVFEV 47 (89)
Q Consensus 28 PLTg~~~V~~IITdlaVf~~ 47 (89)
=.|-..-++.||||+|++..
T Consensus 160 DvTP~~lIt~iITE~Gv~~p 179 (191)
T 1w2w_B 160 DITPHELIDGIITEEGVFTK 179 (191)
T ss_dssp EEECGGGCSEEEETTEEECC
T ss_pred ccCCHHHcCEEEecCcccCC
Confidence 34556678999999999975
No 32
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=28.65 E-value=18 Score=21.40 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=17.8
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 26 G~~Ik~I~~~tga~I~i~~~ 45 (82)
T 1zzk_A 26 GQRIKQIRHESGASIKIDEP 45 (82)
T ss_dssp GHHHHHHHHHHCCEEEECCT
T ss_pred chHHHHHHHHHCCEEEEcCC
Confidence 67889999999999999864
No 33
>3i12_A D-alanine-D-alanine ligase A; D-alanyl-alanine synthetase A, ADP binding protein, csgid, A binding, cell shape; HET: ADP; 2.20A {Salmonella typhimurium} PDB: 3q1k_A*
Probab=28.34 E-value=70 Score=23.42 Aligned_cols=29 Identities=17% Similarity=0.422 Sum_probs=20.6
Q ss_pred ccCCcEEEEEec--CCCCH----HHHHHhhCCcee
Q psy5915 48 DKERGLTLIEIA--EGVEV----PEIIVSTGCDFA 76 (89)
Q Consensus 48 d~~~~l~L~ei~--pGvt~----eeV~~~Tg~~l~ 76 (89)
|+++++++.|+. ||.|. ....+++|.++.
T Consensus 306 ~~~g~~~vlEiN~~Pg~t~~s~~p~~~~a~G~~~~ 340 (364)
T 3i12_A 306 TADNEVVINEINTLPGFTNISMYPKLWQASGLGYT 340 (364)
T ss_dssp CTTCCEEEEEEESSCCCSTTCHHHHHHHTTTCCHH
T ss_pred ecCCCEEEEEeeCCCCCCCCCHHHHHHHHhCcCHH
Confidence 456789999999 99763 345566777653
No 34
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=28.20 E-value=19 Score=21.26 Aligned_cols=20 Identities=20% Similarity=0.415 Sum_probs=17.8
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.+++.
T Consensus 25 G~~Ik~I~~~sga~I~i~~~ 44 (82)
T 1wvn_A 25 GANINEIRQMSGAQIKIANP 44 (82)
T ss_dssp GHHHHHHHHHHCCEEEECCC
T ss_pred chhHHHHHHHhCCEEEEecC
Confidence 67889999999999999864
No 35
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=28.17 E-value=39 Score=20.40 Aligned_cols=19 Identities=16% Similarity=0.135 Sum_probs=17.4
Q ss_pred CCCHHHHHHhhCCceeecC
Q psy5915 61 GVEVPEIIVSTGCDFAVSP 79 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~ 79 (89)
|-++.+|++.||+.+.++.
T Consensus 29 G~tIk~Iqe~Tga~I~I~~ 47 (83)
T 2dgr_A 29 GATIKRIQQRTHTYIVTPG 47 (83)
T ss_dssp TSSHHHHHHHTTCEEECCC
T ss_pred chHHHHHHHHhCCeEEecC
Confidence 8899999999999999973
No 36
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=27.52 E-value=19 Score=20.95 Aligned_cols=20 Identities=20% Similarity=0.420 Sum_probs=17.6
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.+++.
T Consensus 24 G~~Ik~I~~~tga~I~i~~~ 43 (76)
T 2p2r_A 24 GAKINEIRQMSGAQIKIANP 43 (76)
T ss_dssp GHHHHHHHHHHCCEEEECCC
T ss_pred ChHHHHHHHHHCCEEEEcCC
Confidence 67889999999999999863
No 37
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=26.86 E-value=21 Score=21.35 Aligned_cols=20 Identities=25% Similarity=0.287 Sum_probs=17.6
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 22 G~~Ik~I~~~tga~I~I~~~ 41 (87)
T 1ec6_A 22 GKTLVEYQELTGARIQISKK 41 (87)
T ss_dssp GHHHHHHHHHHCCEEEECCT
T ss_pred cHhHHHHHHHhCCEEEEccC
Confidence 67789999999999999864
No 38
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=26.59 E-value=31 Score=21.27 Aligned_cols=20 Identities=15% Similarity=0.247 Sum_probs=18.1
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 36 G~~Ir~I~e~tg~~I~i~~~ 55 (95)
T 2ctm_A 36 GKAIRKIMDEFKVDIRFPQS 55 (95)
T ss_dssp SCHHHHHHHHHTCEEECCCT
T ss_pred cchHHHHHHHHCCeEEecCC
Confidence 78899999999999999764
No 39
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A
Probab=25.93 E-value=69 Score=21.23 Aligned_cols=31 Identities=19% Similarity=0.314 Sum_probs=24.5
Q ss_pred CceEEEeccCC-cEEEEEecCCCCHHHHHHhh
Q psy5915 41 RDCVFEVDKER-GLTLIEIAEGVEVPEIIVST 71 (89)
Q Consensus 41 dlaVf~~d~~~-~l~L~ei~pGvt~eeV~~~T 71 (89)
...+|.+|.++ .+.|.+...+.+.+|+.+..
T Consensus 42 ~~iifkId~~~~~I~v~~~~~~~~~~e~~~~L 73 (154)
T 1vkk_A 42 AAIIMKVDKDRQMVVLEDELQNISPEELKLEL 73 (154)
T ss_dssp EEEEEEEETTTTEEEEEEEEESCCHHHHHHHS
T ss_pred cEEEEEEcCCCCEEEEEEcCCCCCHHHHHHhC
Confidence 45689997765 78888877788999998864
No 40
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=25.65 E-value=23 Score=21.38 Aligned_cols=20 Identities=15% Similarity=0.361 Sum_probs=18.0
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.+++.
T Consensus 33 G~~Ik~I~~~tga~I~I~~~ 52 (89)
T 1j5k_A 33 GQRIKQIRHESGASIKIDEP 52 (89)
T ss_dssp GHHHHHHHHHTCCEEEECSC
T ss_pred CHhHHHHHHHhCCeEEecCC
Confidence 78899999999999999864
No 41
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=25.18 E-value=26 Score=21.76 Aligned_cols=20 Identities=15% Similarity=0.378 Sum_probs=17.9
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.|+++
T Consensus 34 G~~Ik~I~~~tga~I~I~~~ 53 (104)
T 1we8_A 34 GETIRSICKASGAKITCDKE 53 (104)
T ss_dssp SHHHHHHHHHHCCEEEECCS
T ss_pred CHHHHHHHHHHCCEEEEecC
Confidence 77899999999999999863
No 42
>3nzp_A Arginine decarboxylase; alpha-beta protein, structural genomics, PSI-biology, protei structure initiative; HET: PLP; 3.00A {Campylobacter jejuni subsp}
Probab=23.63 E-value=1e+02 Score=25.33 Aligned_cols=36 Identities=8% Similarity=0.243 Sum_probs=29.0
Q ss_pred cCceEEEeccCCcEEEEEecCCCCHHHHHHhhCCcee
Q psy5915 40 SRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFA 76 (89)
Q Consensus 40 TdlaVf~~d~~~~l~L~ei~pGvt~eeV~~~Tg~~l~ 76 (89)
|+-..+.+|++| +.+..+.+|=|++||....+++..
T Consensus 533 ~~~v~v~~~~~g-~~~~~~~~g~~~~~~l~~~~y~~~ 568 (619)
T 3nzp_A 533 PTEAIISINEKG-YEVEGIIEAQSILDTLEDLDYDIH 568 (619)
T ss_dssp CEEEEEEECSSC-EEEEEEECCCCHHHHHHHTTCCHH
T ss_pred CCEEEEEEcCCc-eEEEEeecCCCHHHHHHhcCCCHH
Confidence 555566675554 999999999999999999998753
No 43
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5
Probab=23.04 E-value=29 Score=25.37 Aligned_cols=21 Identities=0% Similarity=-0.133 Sum_probs=16.7
Q ss_pred CCCCCCCCccEEEcCceEEEe
Q psy5915 27 TRLGLTALSSDVLSRDCVFEV 47 (89)
Q Consensus 27 lPLTg~~~V~~IITdlaVf~~ 47 (89)
+-+|...-++.||||+|+|..
T Consensus 251 fD~tP~~lI~~iITe~Gv~~p 271 (276)
T 1vb5_A 251 FDVTPWKYVRGIITELGIVIP 271 (276)
T ss_dssp EEEECGGGCSEEEETTEEECT
T ss_pred eEecCHHHCCEEEeCCCccCc
Confidence 445667788999999999863
No 44
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=22.82 E-value=29 Score=21.75 Aligned_cols=20 Identities=10% Similarity=0.224 Sum_probs=18.1
Q ss_pred CCCHHHHHHhhCCceeecCC
Q psy5915 61 GVEVPEIIVSTGCDFAVSPD 80 (89)
Q Consensus 61 Gvt~eeV~~~Tg~~l~va~~ 80 (89)
|-++.+|++.||+.+.++++
T Consensus 36 G~~Ir~I~eetg~~I~I~~~ 55 (104)
T 2ctk_A 36 GSGIRKMMDEFEVNIHVPAP 55 (104)
T ss_dssp SHHHHHHHHHTCCEEECCCT
T ss_pred chHHHHHHHHHCCEEEecCC
Confidence 78899999999999999865
No 45
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2
Probab=21.65 E-value=89 Score=20.42 Aligned_cols=31 Identities=26% Similarity=0.291 Sum_probs=24.1
Q ss_pred CceEEEeccCC-cEEEEEecCCCCHHHHHHhh
Q psy5915 41 RDCVFEVDKER-GLTLIEIAEGVEVPEIIVST 71 (89)
Q Consensus 41 dlaVf~~d~~~-~l~L~ei~pGvt~eeV~~~T 71 (89)
...+|.+|.+. .+.|.+..++.+++|+.+..
T Consensus 36 ~~iifki~~~~~~I~v~~~~~~~~~~el~~~L 67 (151)
T 1v6f_A 36 AAIIMKIDKDERLVVLDEELEGVSPDELKDEL 67 (151)
T ss_dssp EEEEEEECSSSCEEEEEEEEESCCHHHHGGGS
T ss_pred cEEEEEEcCCCcEEEEEecCCCCCHHHHHhhC
Confidence 34589997765 68888877788999998754
No 46
>3vmm_A Alanine-anticapsin ligase BACD; ATP-grAsp domain, amino acid ligase, ATP binding; HET: ADP P0D; 2.50A {Bacillus subtilis}
Probab=20.98 E-value=75 Score=24.52 Aligned_cols=28 Identities=36% Similarity=0.330 Sum_probs=18.6
Q ss_pred ccCCcEEEEEecCCCC--H--HHHHHhhCCce
Q psy5915 48 DKERGLTLIEIAEGVE--V--PEIIVSTGCDF 75 (89)
Q Consensus 48 d~~~~l~L~ei~pGvt--~--eeV~~~Tg~~l 75 (89)
|+++++++.|+.|..+ . .-+...||+++
T Consensus 317 ~~dg~~~~iEvNpR~~G~~~~~~~~~~tG~dl 348 (474)
T 3vmm_A 317 MKNREPGLIESAARFAGWNMIPNIKKVFGLDM 348 (474)
T ss_dssp EGGGEEEEEEEESSCCSTTHHHHHHHHHCCCH
T ss_pred cCCCCEEEEEEeCCCCCCchHHHHHHHHCcCH
Confidence 4566799999999876 2 33445555543
No 47
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=20.37 E-value=70 Score=18.84 Aligned_cols=23 Identities=0% Similarity=0.081 Sum_probs=19.1
Q ss_pred EEEEecCCCCHHHHHHhhCCcee
Q psy5915 54 TLIEIAEGVEVPEIIVSTGCDFA 76 (89)
Q Consensus 54 ~L~ei~pGvt~eeV~~~Tg~~l~ 76 (89)
.-.++.+|.|+.|+.+..|.+..
T Consensus 13 ~~~ev~~g~Tv~dLL~~Lgl~~~ 35 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRAVDLSPH 35 (74)
T ss_dssp EEEECSTTCSHHHHHHTTCCCSS
T ss_pred eeEEcCCCCcHHHHHHHcCCCcc
Confidence 34689999999999999997643
Done!