RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5915
         (89 letters)



>d1ooya1 c.124.1.3 (A:261-481) Succinate:CoA transferase, C-terminal
           domain {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 221

 Score = 69.4 bits (169), Expect = 8e-17
 Identities = 30/52 (57%), Positives = 40/52 (76%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGCDFAVSPDLKPMGQVET 89
           +++   VF+VD+++GLTLIE+ EG+ V +I  STGCDFAVSP L PM QV T
Sbjct: 170 IITEKAVFDVDRKKGLTLIELWEGLTVDDIKKSTGCDFAVSPKLIPMQQVTT 221


>d1poib_ c.124.1.3 (B:) Glutaconate:CoA transferase beta
           {Acidaminococcus fermentans [TaxId: 905]}
          Length = 260

 Score = 50.4 bits (120), Expect = 2e-09
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 3/81 (3%)

Query: 5   RPGRESNPRPSAYKADALPTKPTRLGLTALS--SDVLSRDCVFEVDKERG-LTLIEIAEG 61
           R         ++      P    RLGL        V++   + + D++   + L      
Sbjct: 154 RRFMNKIDYVTSPGWIDGPGGRERLGLPGDVGPQLVVTDKGILKFDEKTKRMYLAAYYPT 213

Query: 62  VEVPEIIVSTGCDFAVSPDLK 82
               +++ +TG D  VS  ++
Sbjct: 214 SSPEDVLENTGFDLDVSKAVE 234


>d2ahua1 c.124.1.3 (A:283-529) Putative enzyme YdiF C-terminal
           domain {Escherichia coli [TaxId: 562]}
          Length = 247

 Score = 49.6 bits (118), Expect = 3e-09
 Identities = 17/48 (35%), Positives = 28/48 (58%), Gaps = 2/48 (4%)

Query: 38  VLSRDCVFEVDKERGLTLIEIAEGVEV-PEIIVSTGCDFAVSPDLKPM 84
            ++   VF + ++ GL LIEIA GV++  +I+        +SP+LK M
Sbjct: 184 YITERAVFTLKED-GLHLIEIAPGVDLQKDILDKMDFTPVISPELKLM 230


>d1dwka1 a.35.1.4 (A:1-86) Cyanase N-terminal domain {Escherichia
          coli [TaxId: 562]}
          Length = 86

 Score = 23.9 bits (52), Expect = 1.8
 Identities = 10/50 (20%), Positives = 18/50 (36%), Gaps = 9/50 (18%)

Query: 24 TKPTRLGLTALSSDVLSRDCVFEVDKERGLTLIEIAEGVEVPEIIVSTGC 73
           +  RL L            +     ++ L+  EIA+G  + E  V+   
Sbjct: 7  NRNIRLDLADA---------ILLSKAKKDLSFAEIADGTGLAEAFVTAAL 47


>d1j5xa_ c.80.1.1 (A:) Hypothetical protein TM0813 {Thermotoga
           maritima [TaxId: 2336]}
          Length = 329

 Score = 24.6 bits (52), Expect = 2.0
 Identities = 6/19 (31%), Positives = 12/19 (63%)

Query: 49  KERGLTLIEIAEGVEVPEI 67
           +  G T++E+ EG ++P  
Sbjct: 271 ESLGATVLEVGEGGDIPVS 289


>d1xr4a2 c.124.1.2 (A:237-505) Putative citrate lyase alpha chain,
           citF2 {Salmonella typhimurium [TaxId: 90371]}
          Length = 269

 Score = 22.9 bits (49), Expect = 6.7
 Identities = 4/22 (18%), Positives = 11/22 (50%)

Query: 49  KERGLTLIEIAEGVEVPEIIVS 70
           ++R   L    + +E  + +V+
Sbjct: 231 QQRAEQLTGKPQPIEFTDRVVA 252


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.314    0.134    0.382 

Gapped
Lambda     K      H
   0.267   0.0696    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 311,056
Number of extensions: 11441
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 8
Length of query: 89
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 36
Effective length of database: 1,679,906
Effective search space: 60476616
Effective search space used: 60476616
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (21.9 bits)