BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5916
(190 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8NFJ8|BHE22_HUMAN Class E basic helix-loop-helix protein 22 OS=Homo sapiens
GN=BHLHE22 PE=2 SV=1
Length = 381
Score = 139 bits (351), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 72/76 (94%)
Query: 77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
KK+++ K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL
Sbjct: 235 KKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 294
Query: 137 MQANALEELRRIITYI 152
MQA ALEE+RR++ Y+
Sbjct: 295 MQAQALEEMRRLVAYL 310
>sp|Q0V9X5|BHE22_XENTR Class E basic helix-loop-helix protein 22 OS=Xenopus tropicalis
GN=bhlhe22 PE=2 SV=1
Length = 296
Score = 139 bits (351), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 64/76 (84%), Positives = 73/76 (96%)
Query: 77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
KK+++ +T+RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL
Sbjct: 146 KKSKEQRTLRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 205
Query: 137 MQANALEELRRIITYI 152
MQA ALEE+RR++ Y+
Sbjct: 206 MQAQALEEMRRLVAYL 221
>sp|Q71T09|BHE22_CHICK Class E basic helix-loop-helix protein 22 OS=Gallus gallus
GN=BHLHE22 PE=2 SV=1
Length = 311
Score = 139 bits (349), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 64/77 (83%), Positives = 73/77 (94%)
Query: 76 AKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
+KK+++ K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI
Sbjct: 163 SKKSKEQKALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 222
Query: 136 LMQANALEELRRIITYI 152
LMQA ALEE+RR++ Y+
Sbjct: 223 LMQAQALEEMRRLVAYL 239
>sp|Q8C6A8|BHE22_MOUSE Class E basic helix-loop-helix protein 22 OS=Mus musculus
GN=Bhlhe22 PE=1 SV=1
Length = 355
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/70 (88%), Positives = 67/70 (95%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA AL
Sbjct: 215 KALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQAL 274
Query: 143 EELRRIITYI 152
EE+RR++ Y+
Sbjct: 275 EEMRRLVAYL 284
>sp|O09029|BHE22_MESAU Class E basic helix-loop-helix protein 22 OS=Mesocricetus auratus
GN=BHLHE22 PE=2 SV=2
Length = 365
Score = 135 bits (339), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 62/70 (88%), Positives = 67/70 (95%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K +RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA AL
Sbjct: 225 KALRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQAQAL 284
Query: 143 EELRRIITYI 152
EE+RR++ Y+
Sbjct: 285 EEMRRLVAYL 294
>sp|Q8BGW3|BHE23_MOUSE Class E basic helix-loop-helix protein 23 OS=Mus musculus
GN=Bhlhe23 PE=2 SV=1
Length = 223
Score = 133 bits (334), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 63/81 (77%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Query: 77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
++ R+ +++RL+INARERRRMHDLNDALD LRAVIPYAHSPSVRKLSKIATLLLAKNYIL
Sbjct: 91 RRPREQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYIL 150
Query: 137 MQANALEELRRIITYI-QAQG 156
MQA ALEE+RR++ Y+ Q QG
Sbjct: 151 MQAQALEEMRRLVAYLNQGQG 171
>sp|Q8NDY6|BHE23_HUMAN Class E basic helix-loop-helix protein 23 OS=Homo sapiens
GN=BHLHE23 PE=2 SV=1
Length = 225
Score = 129 bits (323), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 61/81 (75%), Positives = 74/81 (91%), Gaps = 1/81 (1%)
Query: 77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
++ R+ +++RL+INARERRRMHDLNDALD LRAVIPYAHSPSVRKLSKIATLLLAKNYIL
Sbjct: 93 RRPREQRSLRLSINARERRRMHDLNDALDGLRAVIPYAHSPSVRKLSKIATLLLAKNYIL 152
Query: 137 MQANALEELRRIITYI-QAQG 156
MQA AL+E+RR++ ++ Q QG
Sbjct: 153 MQAQALDEMRRLVAFLNQGQG 173
>sp|Q13516|OLIG2_HUMAN Oligodendrocyte transcription factor 2 OS=Homo sapiens GN=OLIG2
PE=1 SV=2
Length = 323
Score = 108 bits (269), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 61/70 (87%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
+ +RL IN+RER+RMHDLN A+D LR V+PYAH PSVRKLSKIATLLLA+NYILM N+L
Sbjct: 107 QQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSL 166
Query: 143 EELRRIITYI 152
EE++R+++ I
Sbjct: 167 EEMKRLVSEI 176
>sp|Q9EQW6|OLIG2_MOUSE Oligodendrocyte transcription factor 2 OS=Mus musculus GN=Olig2
PE=1 SV=1
Length = 323
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 61/70 (87%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
+ +RL IN+RER+RMHDLN A+D LR V+PYAH PSVRKLSKIATLLLA+NYILM N+L
Sbjct: 107 QQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSL 166
Query: 143 EELRRIITYI 152
EE++R+++ I
Sbjct: 167 EEMKRLVSEI 176
>sp|Q90XB3|OLIG2_CHICK Oligodendrocyte transcription factor 2 OS=Gallus gallus GN=OLIG2
PE=2 SV=1
Length = 298
Score = 107 bits (267), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 48/70 (68%), Positives = 61/70 (87%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
+ +RL IN+RER+RMHDLN A+D LR V+PYAH PSVRKLSKIATLLLA+NYILM N+L
Sbjct: 105 QQLRLKINSRERKRMHDLNIAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTNSL 164
Query: 143 EELRRIITYI 152
EE++R+++ I
Sbjct: 165 EEMKRLVSEI 174
>sp|Q7RTU3|OLIG3_HUMAN Oligodendrocyte transcription factor 3 OS=Homo sapiens GN=OLIG3
PE=1 SV=2
Length = 272
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 59/70 (84%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
+ +RL IN RER+RMHDLN A+D LR V+PYAH PSVRKLSKIATLLLA+NYILM ++L
Sbjct: 82 QQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSL 141
Query: 143 EELRRIITYI 152
EE++R++ I
Sbjct: 142 EEMKRLVGEI 151
>sp|Q6PFG8|OLIG3_MOUSE Oligodendrocyte transcription factor 3 OS=Mus musculus GN=Olig3
PE=2 SV=1
Length = 273
Score = 103 bits (257), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 47/70 (67%), Positives = 59/70 (84%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
+ +RL IN RER+RMHDLN A+D LR V+PYAH PSVRKLSKIATLLLA+NYILM ++L
Sbjct: 83 QQLRLKINGRERKRMHDLNLAMDGLREVMPYAHGPSVRKLSKIATLLLARNYILMLTSSL 142
Query: 143 EELRRIITYI 152
EE++R++ I
Sbjct: 143 EEMKRLVGEI 152
>sp|Q8TAK6|OLIG1_HUMAN Oligodendrocyte transcription factor 1 OS=Homo sapiens GN=OLIG1
PE=1 SV=2
Length = 271
Score = 77.8 bits (190), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 44/77 (57%), Positives = 55/77 (71%), Gaps = 5/77 (6%)
Query: 78 KNRQGKTVRLNINARERRRMHDLNDALDELRAVI-PY--AHSPSV--RKLSKIATLLLAK 132
K Q + +R IN+RER+RM DLN A+D LR VI PY AH RKLSKIATLLLA+
Sbjct: 99 KEEQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLLAR 158
Query: 133 NYILMQANALEELRRII 149
NYIL+ ++L+ELRR +
Sbjct: 159 NYILLLGSSLQELRRAL 175
>sp|Q9JKN5|OLIG1_MOUSE Oligodendrocyte transcription factor 1 OS=Mus musculus GN=Olig1
PE=1 SV=2
Length = 260
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Query: 76 AKKNRQGKTVRLNINARERRRMHDLNDALDELRAVI-PY--AHSPSV--RKLSKIATLLL 130
AK+ +Q + +R IN+RER+RM DLN A+D LR VI PY AH RKLSKIATLLL
Sbjct: 86 AKEEQQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLL 145
Query: 131 AKNYILMQANALEELRRII 149
A+NYIL+ ++L+ELRR +
Sbjct: 146 ARNYILLLGSSLQELRRAL 164
>sp|Q9WUQ3|OLIG1_RAT Oligodendrocyte transcription factor 1 OS=Rattus norvegicus
GN=Olig1 PE=2 SV=2
Length = 261
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 45/79 (56%), Positives = 58/79 (73%), Gaps = 5/79 (6%)
Query: 76 AKKNRQGKTVRLNINARERRRMHDLNDALDELRAVI-PY--AHSPSV--RKLSKIATLLL 130
AK+ +Q + +R IN+RER+RM DLN A+D LR VI PY AH RKLSKIATLLL
Sbjct: 87 AKEEQQQQQLRRKINSRERKRMQDLNLAMDALREVILPYSAAHCQGAPGRKLSKIATLLL 146
Query: 131 AKNYILMQANALEELRRII 149
A+NYIL+ ++L+ELRR +
Sbjct: 147 ARNYILLLGSSLQELRRAL 165
>sp|Q60867|NDF1_MOUSE Neurogenic differentiation factor 1 OS=Mus musculus GN=Neurod1 PE=1
SV=2
Length = 357
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 60/113 (53%), Gaps = 22/113 (19%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIP-YAHSPSVRKLSKIATLLLAKNYILMQANA 141
K R+ NARER RMH LN ALD LR V+P Y+ +KLSKI TL LAKNYI A
Sbjct: 100 KLRRMKANARERNRMHGLNAALDNLRKVVPCYS---KTQKLSKIETLRLAKNYIW----A 152
Query: 142 LEELRR------IITYIQAQGTMTMPPGFDLQA--------TMLPVQQPDTPP 180
L E+ R +++++Q P +L A T LP Q PD PP
Sbjct: 153 LSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNPDMPP 205
>sp|Q60430|NDF1_MESAU Neurogenic differentiation factor 1 OS=Mesocricetus auratus
GN=NEUROD1 PE=1 SV=2
Length = 355
Score = 70.5 bits (171), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 58/112 (51%), Gaps = 20/112 (17%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R+ NARER RMH LN ALD LR V+P +KLSKI TL LAKNYI AL
Sbjct: 99 KLRRMKANARERNRMHGLNAALDNLRKVVPCYS--KTQKLSKIETLRLAKNYIW----AL 152
Query: 143 EELRR------IITYIQAQGTMTMPPGFDLQA--------TMLPVQQPDTPP 180
E+ R +++++Q P +L A T LP Q PD PP
Sbjct: 153 SEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNPDMPP 204
>sp|Q64289|NDF1_RAT Neurogenic differentiation factor 1 OS=Rattus norvegicus GN=Neurod1
PE=1 SV=1
Length = 357
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 60/113 (53%), Gaps = 22/113 (19%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIP-YAHSPSVRKLSKIATLLLAKNYILMQANA 141
K R+ NARER RMH LN ALD LR V+P Y+ +KLSKI TL LAKNYI A
Sbjct: 100 KLRRMKANARERNRMHGLNAALDNLRKVVPCYS---KTQKLSKIETLRLAKNYIW----A 152
Query: 142 LEELRR------IITYIQAQGTMTMPPGFDLQA--------TMLPVQQPDTPP 180
L E+ R +++++Q P +L A T LP Q PD PP
Sbjct: 153 LSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNPDMPP 205
>sp|O42202|NDF1_DANRE Neurogenic differentiation factor 1 OS=Danio rerio GN=neurod1 PE=1
SV=1
Length = 350
Score = 68.6 bits (166), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/112 (41%), Positives = 59/112 (52%), Gaps = 20/112 (17%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R+ NARER RMH LNDAL+ LR V+P +KLSKI TL LAKNYI AL
Sbjct: 95 KMRRMKANARERNRMHGLNDALESLRKVVPCY--SKTQKLSKIETLRLAKNYIW----AL 148
Query: 143 EELRR------IITYIQAQGTMTMPPGFDLQA--------TMLPVQQPDTPP 180
E+ R +++++QA P +L A T LP Q + PP
Sbjct: 149 SEILRSGKSPDLMSFVQALCKGLSQPTTNLVAGCLQLNPRTFLPEQSQEMPP 200
>sp|Q13562|NDF1_HUMAN Neurogenic differentiation factor 1 OS=Homo sapiens GN=NEUROD1 PE=1
SV=3
Length = 356
Score = 67.0 bits (162), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 59/113 (52%), Gaps = 22/113 (19%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIP-YAHSPSVRKLSKIATLLLAKNYILMQANA 141
K R+ NARER RMH LN ALD LR V+P Y+ +KLSKI TL LAKNYI A
Sbjct: 100 KLRRMKANARERNRMHGLNAALDNLRKVVPCYS---KTQKLSKIETLRLAKNYIW----A 152
Query: 142 LEELRR------IITYIQAQGTMTMPPGFDLQA--------TMLPVQQPDTPP 180
L E+ R +++++Q P +L A T LP Q D PP
Sbjct: 153 LSEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQNQDMPP 205
>sp|Q91616|NDF1_XENLA Neurogenic differentiation factor 1 OS=Xenopus laevis GN=neurod1
PE=1 SV=1
Length = 352
Score = 67.0 bits (162), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 46/109 (42%), Positives = 56/109 (51%), Gaps = 20/109 (18%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R+ NARER RMH LNDALD LR V+P +KLSKI TL LAKNYI AL
Sbjct: 101 KVRRMKANARERNRMHGLNDALDSLRKVVPCY--SKTQKLSKIETLRLAKNYIW----AL 154
Query: 143 EELRR------IITYIQAQGTMTMPPGFDLQA--------TMLPVQQPD 177
E+ R +++++Q P +L A T LP Q D
Sbjct: 155 SEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQSQD 203
>sp|Q6NYU3|NDF6A_DANRE Neurogenic differentiation factor 6-A OS=Danio rerio GN=neurod6a
PE=2 SV=1
Length = 327
Score = 66.6 bits (161), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 44/110 (40%), Positives = 60/110 (54%), Gaps = 4/110 (3%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R+ NARER RMH LN+ALD LR V+P +S +KLSKI TL LAKNYI + L
Sbjct: 87 KVRRMEANARERNRMHGLNNALDSLRKVVP-CYS-KTQKLSKIETLRLAKNYIWALSEIL 144
Query: 143 EELRR--IITYIQAQGTMTMPPGFDLQATMLPVQQPDTPPPSTSDPSNVS 190
+R ++T++Q P +L A L + + P S ++ S
Sbjct: 145 STGKRPDLLTFVQTLCKGLSQPTTNLVAGCLQLNARNFIPDQISGEASFS 194
>sp|Q15784|NDF2_HUMAN Neurogenic differentiation factor 2 OS=Homo sapiens GN=NEUROD2 PE=2
SV=2
Length = 382
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/93 (44%), Positives = 51/93 (54%), Gaps = 4/93 (4%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMHDLN ALD LR V+P +KLSKI TL LAKNYI + L
Sbjct: 120 KLRRQKANARERNRMHDLNAALDNLRKVVPCY--SKTQKLSKIETLRLAKNYIWALSEIL 177
Query: 143 EELRR--IITYIQAQGTMTMPPGFDLQATMLPV 173
+R +++Y+Q P +L A L +
Sbjct: 178 RSGKRPDLVSYVQTLCKGLSQPTTNLVAGCLQL 210
>sp|Q62414|NDF2_MOUSE Neurogenic differentiation factor 2 OS=Mus musculus GN=Neurod2 PE=1
SV=3
Length = 383
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMHDLN ALD LR V+P +KLSKI TL LAKNYI + L
Sbjct: 121 KLRRQKANARERNRMHDLNAALDNLRKVVPCY--SKTQKLSKIETLRLAKNYIWALSEIL 178
Query: 143 EELRR--IITYIQAQGTMTMPPGFDLQATML 171
+R +++Y+Q P +L A L
Sbjct: 179 RSGKRPDLVSYVQTLCKGLSQPTTNLVAGCL 209
>sp|Q63689|NDF2_RAT Neurogenic differentiation factor 2 OS=Rattus norvegicus GN=Neurod2
PE=1 SV=2
Length = 382
Score = 66.2 bits (160), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 50/91 (54%), Gaps = 4/91 (4%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMHDLN ALD LR V+P +KLSKI TL LAKNYI + L
Sbjct: 120 KLRRQKANARERNRMHDLNAALDNLRKVVPCY--SKTQKLSKIETLRLAKNYIWALSEIL 177
Query: 143 EELRR--IITYIQAQGTMTMPPGFDLQATML 171
+R +++Y+Q P +L A L
Sbjct: 178 RSGKRPDLVSYVQTLCKGLSQPTTNLVAGCL 208
>sp|Q9W6C8|NDF2_DANRE Neurogenic differentiation factor 2 OS=Danio rerio GN=neurod2 PE=2
SV=1
Length = 363
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 40/93 (43%), Positives = 50/93 (53%), Gaps = 4/93 (4%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMHDLN ALD L V+P +KLSKI TL LAKNYI + L
Sbjct: 106 KVRRQKANARERTRMHDLNSALDNLLKVVPCY--SKTQKLSKIETLRLAKNYIWALSEIL 163
Query: 143 EELRR--IITYIQAQGTMTMPPGFDLQATMLPV 173
+R +++Y+Q P +L A L +
Sbjct: 164 RNGKRPDVVSYVQTLCKGLSQPTTNLVAGCLQL 196
>sp|P48986|NDF6_MOUSE Neurogenic differentiation factor 6 OS=Mus musculus GN=Neurod6 PE=2
SV=1
Length = 337
Score = 64.3 bits (155), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 12/77 (15%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMH LNDALD LR V+P +S +KLSKI TL LAKNYI AL
Sbjct: 93 KFRRQEANARERNRMHGLNDALDNLRKVVP-CYS-KTQKLSKIETLRLAKNYIW----AL 146
Query: 143 EELRRI------ITYIQ 153
E+ RI +T++Q
Sbjct: 147 SEILRIGKRPDLLTFVQ 163
>sp|Q4R5G6|NDF6_MACFA Neurogenic differentiation factor 6 OS=Macaca fascicularis
GN=NEUROD6 PE=2 SV=1
Length = 337
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 12/77 (15%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMH LNDALD LR V+P +S +KLSKI TL LAKNYI AL
Sbjct: 93 KFRRQEANARERNRMHGLNDALDNLRKVVP-CYS-KTQKLSKIETLRLAKNYIW----AL 146
Query: 143 EELRRI------ITYIQ 153
E+ RI +T++Q
Sbjct: 147 SEILRIGKRPDLLTFVQ 163
>sp|Q96NK8|NDF6_HUMAN Neurogenic differentiation factor 6 OS=Homo sapiens GN=NEUROD6 PE=2
SV=1
Length = 337
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 12/77 (15%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMH LNDALD LR V+P +S +KLSKI TL LAKNYI AL
Sbjct: 93 KFRRQEANARERNRMHGLNDALDNLRKVVP-CYS-KTQKLSKIETLRLAKNYIW----AL 146
Query: 143 EELRRI------ITYIQ 153
E+ RI +T++Q
Sbjct: 147 SEILRIGKRPDLLTFVQ 163
>sp|Q08DI0|NDF6_BOVIN Neurogenic differentiation factor 6 OS=Bos taurus GN=NEUROD6 PE=2
SV=1
Length = 337
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 41/77 (53%), Positives = 48/77 (62%), Gaps = 12/77 (15%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMH LNDALD LR V+P +S +KLSKI TL LAKNYI AL
Sbjct: 93 KFRRQEANARERNRMHGLNDALDNLRKVVP-CYS-KTQKLSKIETLRLAKNYIW----AL 146
Query: 143 EELRRI------ITYIQ 153
E+ RI +T++Q
Sbjct: 147 SEILRIGKRPDLLTFVQ 163
>sp|P79765|NDF1_CHICK Neurogenic differentiation factor 1 OS=Gallus gallus GN=NEUROD1
PE=2 SV=1
Length = 357
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 56/112 (50%), Gaps = 20/112 (17%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R+ NARER RMH LN ALD LR V+P +KLSKI TL LAKNYI AL
Sbjct: 103 KLRRMKANARERNRMHGLNAALDNLRKVVPCYS--KTQKLSKIETLRLAKNYIW----AL 156
Query: 143 EELRR------IITYIQAQGTMTMPPGFDLQA--------TMLPVQQPDTPP 180
E+ R +++++Q P +L A T LP Q D P
Sbjct: 157 SEILRSGKSPDLVSFVQTLCKGLSQPTTNLVAGCLQLNPRTFLPEQSADAAP 208
>sp|O09105|NDF4_MOUSE Neurogenic differentiation factor 4 OS=Mus musculus GN=Neurod4 PE=1
SV=1
Length = 330
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE 143
R+ NARER RMH LNDALD LR V+P +KLSKI TL LA+NYI + LE
Sbjct: 89 RVKANARERTRMHGLNDALDNLRRVMPCY--SKTQKLSKIETLRLARNYIWALSEVLE 144
>sp|Q9HD90|NDF4_HUMAN Neurogenic differentiation factor 4 OS=Homo sapiens GN=NEUROD4 PE=2
SV=2
Length = 331
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE 143
R+ NARER RMH LNDALD LR V+P +KLSKI TL LA+NYI + LE
Sbjct: 89 RVKANARERTRMHGLNDALDNLRRVMPCY--SKTQKLSKIETLRLARNYIWALSEVLE 144
>sp|Q9W6C7|NDF6B_DANRE Neurogenic differentiation factor 6-B OS=Danio rerio GN=neurod6b
PE=1 SV=3
Length = 317
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 40/91 (43%), Positives = 52/91 (57%), Gaps = 4/91 (4%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K R NARER RMH LNDAL+ LR V+P +S + +KLSKI TL LAKNYI + L
Sbjct: 77 KMRRQEANARERSRMHGLNDALESLRKVVP-CYSKT-QKLSKIETLRLAKNYIWALSETL 134
Query: 143 EELRR--IITYIQAQGTMTMPPGFDLQATML 171
+R ++ ++Q P +L A L
Sbjct: 135 SAGKRPDLLAFVQTLCKGLSQPTTNLVAGCL 165
>sp|O42606|NGN1_DANRE Neurogenin-1 OS=Danio rerio GN=neurog1 PE=2 SV=1
Length = 208
Score = 62.4 bits (150), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 42/82 (51%), Positives = 47/82 (57%), Gaps = 13/82 (15%)
Query: 75 LAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNY 134
+ KKNR RL N RER RMH+LNDALD LR+V+P P KL+KI TL A NY
Sbjct: 66 VVKKNR-----RLKANDRERNRMHNLNDALDALRSVLPAF--PDDTKLTKIETLRFAHNY 118
Query: 135 ILMQANALEELRRIITYIQAQG 156
I AL E RI Q QG
Sbjct: 119 IW----ALSETIRIAD--QKQG 134
>sp|P79766|NDF4_CHICK Neurogenic differentiation factor 4 OS=Gallus gallus GN=NEUROD4
PE=2 SV=1
Length = 330
Score = 62.0 bits (149), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 38/58 (65%), Gaps = 2/58 (3%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE 143
R+ NARER RMH LNDALD LR V+P +KLSKI TL LA+NYI + LE
Sbjct: 89 RVKANARERTRMHGLNDALDNLRRVMPCYS--KTQKLSKIETLRLARNYIWALSEVLE 144
>sp|B6VQA1|DIMM_DROME Protein dimmed OS=Drosophila melanogaster GN=dimm PE=1 SV=1
Length = 390
Score = 61.6 bits (148), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/51 (62%), Positives = 34/51 (66%), Gaps = 2/51 (3%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
RL N RER RMH LNDA LR VIP H R+LSKI TL LAKNYI+
Sbjct: 158 RLESNERERMRMHSLNDAFQSLREVIP--HVEMERRLSKIETLTLAKNYII 206
>sp|P70447|NGN2_MOUSE Neurogenin-2 OS=Mus musculus GN=Neurog2 PE=1 SV=1
Length = 263
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/80 (46%), Positives = 43/80 (53%), Gaps = 6/80 (7%)
Query: 79 NRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQ 138
R KT RL N RER RMH+LN ALD LR V+P P KL+KI TL A NYI
Sbjct: 107 QRIKKTRRLKANNRERNRMHNLNAALDALREVLPT--FPEDAKLTKIETLRFAHNYIW-- 162
Query: 139 ANALEELRRIITYIQAQGTM 158
AL E R+ + G +
Sbjct: 163 --ALTETLRLADHCAGAGGL 180
>sp|Q9QYC3|BHA15_MOUSE Class A basic helix-loop-helix protein 15 OS=Mus musculus
GN=Bhlha15 PE=2 SV=1
Length = 197
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
RL N RER+RMH LN+A LR VIP H + +KLSKI TL LAKNYI
Sbjct: 74 RLESNERERQRMHKLNNAFQALREVIP--HVRADKKLSKIETLTLAKNYI 121
>sp|P70562|BHA15_RAT Class A basic helix-loop-helix protein 15 OS=Rattus norvegicus
GN=Bhlha15 PE=1 SV=1
Length = 197
Score = 59.3 bits (142), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
RL N RER+RMH LN+A LR VIP H + +KLSKI TL LAKNYI
Sbjct: 74 RLESNERERQRMHKLNNAFQALREVIP--HVRADKKLSKIETLTLAKNYI 121
>sp|Q7RTS1|BHA15_HUMAN Class A basic helix-loop-helix protein 15 OS=Homo sapiens
GN=BHLHA15 PE=1 SV=1
Length = 189
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/50 (62%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYI 135
RL N RER+RMH LN+A LR VIP H + +KLSKI TL LAKNYI
Sbjct: 77 RLESNERERQRMHKLNNAFQALREVIP--HVRADKKLSKIETLTLAKNYI 124
>sp|P79920|NDF4_XENLA Neurogenic differentiation factor 4 OS=Xenopus laevis GN=neurod4
PE=1 SV=1
Length = 315
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 38/55 (69%), Gaps = 2/55 (3%)
Query: 90 NARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE 144
NARER RMH LNDAL+ LR V+P +KLSKI TL LA+NYI ++ LE+
Sbjct: 84 NARERSRMHGLNDALENLRRVMPCY--SKTQKLSKIETLRLARNYIWALSDILEQ 136
>sp|Q92858|ATOH1_HUMAN Protein atonal homolog 1 OS=Homo sapiens GN=ATOH1 PE=2 SV=1
Length = 354
Score = 57.8 bits (138), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K RL NARERRRMH LN A D+LR VIP ++ +KLSK TL +A+ YI NAL
Sbjct: 158 KQRRLAANARERRRMHGLNHAFDQLRNVIPSFNND--KKLSKYETLQMAQIYI----NAL 211
Query: 143 EEL 145
EL
Sbjct: 212 SEL 214
>sp|Q5IS79|ATOH1_PANTR Protein atonal homolog 1 OS=Pan troglodytes GN=ATOH1 PE=2 SV=1
Length = 356
Score = 57.4 bits (137), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K RL NARERRRMH LN A D+LR VIP ++ +KLSK TL +A+ YI NAL
Sbjct: 160 KQRRLAANARERRRMHGLNHAFDQLRNVIPSFNND--KKLSKYETLQMAQIYI----NAL 213
Query: 143 EEL 145
EL
Sbjct: 214 SEL 216
>sp|P48985|ATOH1_MOUSE Protein atonal homolog 1 OS=Mus musculus GN=Atoh1 PE=2 SV=1
Length = 351
Score = 57.4 bits (137), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
K RL NARERRRMH LN A D+LR VIP ++ +KLSK TL +A+ YI NAL
Sbjct: 155 KQRRLAANARERRRMHGLNHAFDQLRNVIPSFNND--KKLSKYETLQMAQIYI----NAL 208
Query: 143 EEL 145
EL
Sbjct: 209 SEL 211
>sp|Q9H2A3|NGN2_HUMAN Neurogenin-2 OS=Homo sapiens GN=NEUROG2 PE=1 SV=2
Length = 272
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 41/73 (56%), Gaps = 6/73 (8%)
Query: 80 RQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA 139
R KT RL N RER RMH+LN ALD LR V+P P KL+KI TL A NYI
Sbjct: 108 RIKKTRRLKANNRERNRMHNLNAALDALREVLPT--FPEDAKLTKIETLRFAHNYIW--- 162
Query: 140 NALEELRRIITYI 152
AL E R+ +
Sbjct: 163 -ALTETLRLADHC 174
>sp|O16867|TAP_DROME Basic helix-loop-helix neural transcription factor TAP
OS=Drosophila melanogaster GN=tap PE=2 SV=2
Length = 398
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 34/58 (58%), Gaps = 2/58 (3%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE 143
R+ N RER RMH+LNDAL++LR +P P KL+KI L A NYI LE
Sbjct: 156 RMKANDRERNRMHNLNDALEKLRVTLPSL--PEETKLTKIEILRFAHNYIFALEQVLE 211
>sp|Q92886|NGN1_HUMAN Neurogenin-1 OS=Homo sapiens GN=NEUROG1 PE=1 SV=2
Length = 237
Score = 55.1 bits (131), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
++ R+ N RER RMH+LN ALD LR+V+P P KL+KI TL A NYI A L
Sbjct: 91 RSRRVKANDRERNRMHNLNAALDALRSVLP--SFPDDTKLTKIETLRFAYNYIWALAETL 148
>sp|P70595|NGN1_RAT Neurogenin-1 OS=Rattus norvegicus GN=Neurog1 PE=2 SV=1
Length = 244
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142
++ R+ N RER RMH+LN ALD LR+V+P P KL+KI TL A NYI A L
Sbjct: 92 RSRRVKANDRERNRMHNLNAALDALRSVLP--SFPDDTKLTKIETLRFAYNYIWALAETL 149
>sp|Q9Y4Z2|NGN3_HUMAN Neurogenin-3 OS=Homo sapiens GN=NEUROG3 PE=1 SV=2
Length = 214
Score = 55.1 bits (131), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/73 (45%), Positives = 42/73 (57%), Gaps = 6/73 (8%)
Query: 79 NRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQ 138
++Q ++ R N RER RMH+LN ALD LR V+P P KL+KI TL A NYI
Sbjct: 78 SKQRRSRRKKANDRERNRMHNLNSALDALRGVLPTF--PDDAKLTKIETLRFAHNYIW-- 133
Query: 139 ANALEELRRIITY 151
AL + RI +
Sbjct: 134 --ALTQTLRIADH 144
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.130 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,108,931
Number of Sequences: 539616
Number of extensions: 2985622
Number of successful extensions: 7095
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 6845
Number of HSP's gapped (non-prelim): 292
length of query: 190
length of database: 191,569,459
effective HSP length: 111
effective length of query: 79
effective length of database: 131,672,083
effective search space: 10402094557
effective search space used: 10402094557
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)