Query psy5916
Match_columns 190
No_of_seqs 141 out of 634
Neff 4.4
Searched_HMMs 46136
Date Fri Aug 16 21:43:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5916.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5916hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4029|consensus 99.7 3.5E-18 7.6E-23 145.0 4.1 68 77-146 101-169 (228)
2 KOG3960|consensus 99.7 1.6E-16 3.5E-21 139.0 10.1 69 77-148 110-178 (284)
3 KOG3898|consensus 99.7 4.5E-17 9.9E-22 141.7 6.5 64 81-146 68-131 (254)
4 PF00010 HLH: Helix-loop-helix 99.5 1.4E-13 3.1E-18 92.9 6.5 55 85-139 1-55 (55)
5 KOG4395|consensus 99.5 2.2E-13 4.7E-18 119.5 8.8 62 82-145 171-232 (285)
6 cd00083 HLH Helix-loop-helix d 99.4 3.8E-12 8.2E-17 85.9 7.7 57 84-142 3-59 (60)
7 smart00353 HLH helix loop heli 99.3 1.1E-11 2.5E-16 82.3 7.0 52 90-143 1-52 (53)
8 KOG3910|consensus 99.3 3.8E-12 8.3E-17 120.1 6.3 79 65-144 506-584 (632)
9 KOG0561|consensus 99.2 2.2E-11 4.9E-16 109.4 7.0 70 81-153 56-132 (373)
10 KOG4447|consensus 99.2 7.3E-12 1.6E-16 103.3 2.4 72 84-162 77-148 (173)
11 KOG1319|consensus 98.4 2E-06 4.3E-11 73.6 8.7 66 85-151 62-130 (229)
12 KOG1318|consensus 98.0 4.7E-05 1E-09 71.1 10.1 64 82-146 230-293 (411)
13 KOG2483|consensus 97.6 0.0005 1.1E-08 60.0 10.1 58 82-142 56-114 (232)
14 KOG4447|consensus 96.5 0.0011 2.5E-08 55.2 1.6 56 84-142 20-76 (173)
15 KOG2588|consensus 96.2 0.0082 1.8E-07 61.2 5.7 58 83-144 274-331 (953)
16 PLN03217 transcription factor 96.1 0.022 4.7E-07 43.5 6.3 56 97-152 19-75 (93)
17 KOG4304|consensus 96.1 0.0063 1.4E-07 53.6 3.8 57 85-141 32-91 (250)
18 KOG3561|consensus 95.7 0.018 4E-07 58.0 5.8 55 86-141 21-75 (803)
19 KOG3558|consensus 87.5 0.67 1.4E-05 46.6 4.0 43 93-136 54-96 (768)
20 KOG3560|consensus 68.4 4.2 9.1E-05 40.4 2.7 36 100-136 40-75 (712)
21 PF10392 COG5: Golgi transport 68.1 19 0.00041 28.3 6.0 50 94-150 78-127 (132)
22 PF05308 Mito_fiss_reg: Mitoch 67.0 24 0.00052 31.3 7.0 25 128-152 117-141 (253)
23 PF08651 DASH_Duo1: DASH compl 54.2 85 0.0018 23.1 7.0 44 90-150 3-46 (78)
24 PLN02705 beta-amylase 52.0 1.3E+02 0.0029 30.5 9.8 29 85-113 84-112 (681)
25 KOG3559|consensus 51.0 16 0.00034 35.5 3.2 42 96-138 12-53 (598)
26 KOG4514|consensus 47.5 24 0.00052 30.7 3.5 58 97-154 163-220 (222)
27 COG3755 Uncharacterized protei 42.9 57 0.0012 26.4 4.8 17 98-114 51-67 (127)
28 PF13815 Dzip-like_N: Iguana/D 37.9 69 0.0015 24.7 4.5 21 125-145 61-81 (118)
29 PF05687 DUF822: Plant protein 37.7 42 0.00091 28.0 3.4 28 85-112 11-38 (150)
30 PF15552 DUF4657: Domain of un 32.5 1.2E+02 0.0027 27.7 5.7 19 132-150 126-144 (301)
31 cd06257 DnaJ DnaJ domain or J- 30.6 41 0.00088 21.3 1.9 18 92-109 38-55 (55)
32 smart00271 DnaJ DnaJ molecular 30.2 41 0.00089 21.8 1.9 17 93-109 41-57 (60)
33 PF06602 Myotub-related: Myotu 27.2 1.2E+02 0.0025 27.9 4.9 59 95-156 173-231 (353)
34 PF15459 RRP14: 60S ribosome b 25.3 71 0.0015 22.7 2.4 20 95-114 2-21 (64)
35 PF11279 DUF3080: Protein of u 22.7 4.7E+02 0.01 23.6 7.8 46 100-145 205-252 (316)
36 PF01213 CAP_N: Adenylate cycl 22.0 1.3E+02 0.0028 27.5 4.1 25 132-156 182-206 (312)
37 PF02464 CinA: Competence-dama 21.1 97 0.0021 25.0 2.8 23 89-111 132-154 (154)
38 KOG4395|consensus 20.9 18 0.00038 32.8 -1.6 48 82-140 79-130 (285)
39 KOG2675|consensus 20.5 3.5E+02 0.0077 26.5 6.7 26 131-156 185-210 (480)
No 1
>KOG4029|consensus
Probab=99.72 E-value=3.5e-18 Score=145.04 Aligned_cols=68 Identities=41% Similarity=0.574 Sum_probs=61.2
Q ss_pred cccccchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPS-VRKLSKIATLLLAKNYILMQANALEELR 146 (190)
Q Consensus 77 ~k~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~-~kKLSKietLr~Ai~YI~~L~~~L~e~~ 146 (190)
.+......+|.++|+|||.||++||.||++||.+||.. +. ++|||||+|||+||.||.+|.++|+...
T Consensus 101 ~~~~~~~~~~~~~n~RER~Rv~~vN~~f~~Lr~~lP~~--~~~~kklSKveTLr~A~~YI~~L~~lL~~~~ 169 (228)
T KOG4029|consen 101 SKSSQTSAQRQARNARERQRVQSVNSAFAELRALLPTE--PPQSKKLSKVETLRLATSYIRYLTKLLATQE 169 (228)
T ss_pred ccccchhhhhhhhhhhhhhcccchhhhhHHHHhcCCCC--CCcccccCcccchHHHHHHHHHHHHHhcccc
Confidence 44455677899999999999999999999999999996 46 9999999999999999999999997655
No 2
>KOG3960|consensus
Probab=99.68 E-value=1.6e-16 Score=138.98 Aligned_cols=69 Identities=26% Similarity=0.353 Sum_probs=61.4
Q ss_pred cccccchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRI 148 (190)
Q Consensus 77 ~k~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~ 148 (190)
||+...-+||.+|.+|||+|++.||+|||.|+++.=.+ ++++|.||||||.||.||+.|+.+|.+....
T Consensus 110 krks~svDRRKAATMRERRRLkKVNEAFE~LKRrT~~N---PNQRLPKVEILRsAI~YIE~Lq~LL~~~~~~ 178 (284)
T KOG3960|consen 110 KRKSTSVDRRKAATMRERRRLKKVNEAFETLKRRTSSN---PNQRLPKVEILRSAIRYIERLQALLQEQDQA 178 (284)
T ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhcCCC---ccccccHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 35556778999999999999999999999999998665 7899999999999999999999999876543
No 3
>KOG3898|consensus
Probab=99.68 E-value=4.5e-17 Score=141.73 Aligned_cols=64 Identities=55% Similarity=0.603 Sum_probs=58.2
Q ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 81 QGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELR 146 (190)
Q Consensus 81 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~ 146 (190)
..+.+|.++|+|||+|||+||+|||.||.+||.. +.+.||+|||||++|-+||..|+.++....
T Consensus 68 ~~~~rR~kaNaRER~RMH~LNdAld~LReviP~~--~~~~klskIetl~~a~~yi~als~~~ls~~ 131 (254)
T KOG3898|consen 68 ALTLRRLKANARERTRMHDLNDALDALREVIPHG--LHPPKLSKIETLRLAANYIAALSEVLLSGI 131 (254)
T ss_pred hhhhhcccccchhhccccchhHHHHHhHhhccCc--CCCCCCCcchhHHhhhcchhhhccccccCC
Confidence 4678999999999999999999999999999974 689999999999999999999998875443
No 4
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt).; InterPro: IPR011598 The helix-loop-helix (HLH) DNA-binding domain consists of a closed bundle of four helices in a left-handed twist with two crossover connections. The HLH domain directs dimerisation, and is juxtaposed to basic regions to create a DNA interaction interface surface that recognises specific DNA sequences. Basic region/HLH (bHLH) proteins regulate diverse biological pathways []. bHLH proteins include MyoD [], SREBPs (sterol regulatory element binding proteins) [], and yeast Pho4 (phosphatase system) []. In certain proteins the bHLH domain contains a leucine-zipper motif. The bHLH/leucine zipper (bHLHZip) domain specifies dimerisation within a network of proteins and determines sequence-specific DNA binding []. bHLHZip domains occur in the transcription factors Myc, Mad, Max and Usf [, ]. This entry is bHLHZip, which covers the bHLH domain and the leucine zipper motif, when present.; PDB: 1NLW_A 1NKP_D 1A93_A 2A93_A 1AM9_C 3U5V_A 1A0A_B 2QL2_C 1UKL_C 1AN4_B ....
Probab=99.47 E-value=1.4e-13 Score=92.90 Aligned_cols=55 Identities=44% Similarity=0.565 Sum_probs=49.4
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q psy5916 85 VRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQA 139 (190)
Q Consensus 85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~ 139 (190)
+|...|.+||.|...||++|+.|+..||........|++|++||..||+||.+|+
T Consensus 1 rR~~h~~~Er~RR~~i~~~~~~L~~llp~~~~~~~~k~~K~~iL~~ai~yI~~Lq 55 (55)
T PF00010_consen 1 RRQKHNERERRRRDRINDCFDELRELLPSCSAGSSRKLSKASILQKAIDYIKQLQ 55 (55)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSSHHCCTTSSSSHHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhccchhccccccCCHHHHHHHHHHHHHHhC
Confidence 5788999999999999999999999999841236788999999999999999885
No 5
>KOG4395|consensus
Probab=99.46 E-value=2.2e-13 Score=119.51 Aligned_cols=62 Identities=48% Similarity=0.618 Sum_probs=57.1
Q ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 82 GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145 (190)
Q Consensus 82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~ 145 (190)
.+.+|.++|+|||+||+.||.|||.||.+||.. -.++||||.|||++|..||..|..+|+..
T Consensus 171 ~~~rr~aanarErrrm~gLN~AfD~Lr~v~p~~--~~d~~LSkyetLqmaq~yi~~l~~~l~~~ 232 (285)
T KOG4395|consen 171 NSHRRLAANARERRRMNGLNSAFDRLRLVVPDG--DSDKKLSKYETLQMAQGYILALGCLLDLP 232 (285)
T ss_pred HHhhhcccchHHHHHhhhHHHHHHHHHHhcCCC--CccchhhhhhHHHHHHHHHhhhHHhhcCc
Confidence 456899999999999999999999999999986 38999999999999999999999999543
No 6
>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, dimerization creates a parallel, left-handed, four helix bundle; the basic region N-terminal to the first amphipathic helix mediates high-affinity DNA-binding; there are several groups of HLH proteins: those (E12/E47) which bind specific hexanucleotide sequences such as E-box (5-CANNTG-3) or StRE 5-ATCACCCCAC-3), those lacking the basic domain (Emc, Id) function as negative regulators since they fail to bind DNA, those (hairy, E(spl), deadpan) which repress transcription although they can bind specific hexanucleotide sequences such as N-box (5-CACGc/aG-3), those which have a COE domain (Collier/Olf-1/EBF) which is involved in both in dimerization and in DNA binding, and those which bind pentanucleotides ACGTG or GCGTG and
Probab=99.35 E-value=3.8e-12 Score=85.86 Aligned_cols=57 Identities=42% Similarity=0.528 Sum_probs=51.9
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5916 84 TVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142 (190)
Q Consensus 84 ~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L 142 (190)
.+|...|.+||.|...||.+|+.|+..||... ...|++|+.||..|++||..|+..+
T Consensus 3 ~~r~~~~~~Er~RR~~~n~~~~~L~~llp~~~--~~~k~~k~~iL~~a~~yI~~L~~~~ 59 (60)
T cd00083 3 SRREAHNLRERRRRERINDAFDELRSLLPTLP--PSKKLSKAEILRKAVDYIKSLQELL 59 (60)
T ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHh
Confidence 46778999999999999999999999999862 5899999999999999999998754
No 7
>smart00353 HLH helix loop helix domain.
Probab=99.29 E-value=1.1e-11 Score=82.26 Aligned_cols=52 Identities=46% Similarity=0.645 Sum_probs=47.2
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy5916 90 NARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALE 143 (190)
Q Consensus 90 N~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~ 143 (190)
|++||.|...||++|+.|+..||... ...|++|+.||..|++||..|+..++
T Consensus 1 n~~Er~RR~~~n~~~~~L~~lip~~~--~~~k~~k~~iL~~ai~yi~~L~~~~~ 52 (53)
T smart00353 1 NARERRRRRKINEAFDELRSLLPTLP--NNKKLSKAEILRLAIEYIKSLQEELQ 52 (53)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 67999999999999999999999752 58999999999999999999987654
No 8
>KOG3910|consensus
Probab=99.29 E-value=3.8e-12 Score=120.08 Aligned_cols=79 Identities=29% Similarity=0.321 Sum_probs=68.2
Q ss_pred CCCCCCCCCccccccccchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5916 65 HSGAMGSLQPLAKKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE 144 (190)
Q Consensus 65 ~s~~~~~~~~~~~k~~~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e 144 (190)
++...+..-....|..+.|+||++.|+|||.||++||+||++|-+.+-. |...+|..+|+-||.+|+..|..|++.+.|
T Consensus 506 sS~dedddl~peqkaeREkERR~aNNARERlRVRDINeAfKELGRMCql-HlkSeKpQTKLgILhqAVsVIlsLEQQVRE 584 (632)
T KOG3910|consen 506 SSSDEDDDLNPEQKAEREKERRMANNARERLRVRDINEAFKELGRMCQL-HLKSEKPQTKLGILHQAVSVILSLEQQVRE 584 (632)
T ss_pred CCcccccccChhhhhhHHHHHHhhhhhhhheehhhHHHHHHHHHHHHHH-hhcccCcchhhhHHHHHHHHHHHHHHHHHH
Confidence 3344445556667888999999999999999999999999999999865 445899999999999999999999998866
No 9
>KOG0561|consensus
Probab=99.21 E-value=2.2e-11 Score=109.44 Aligned_cols=70 Identities=33% Similarity=0.415 Sum_probs=60.0
Q ss_pred cchhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHH
Q psy5916 81 QGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL-------EELRRIITYIQ 153 (190)
Q Consensus 81 ~~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L-------~e~~~~~~~~q 153 (190)
+++.||..||-.||+||+.||.+|..||.+||.- .+.||||..||+...+||..|+..- .|+++++.+..
T Consensus 56 erRmRReIANsNERRRMQSINAGFqsLr~LlPr~---eGEKLSKAAILQQTa~yI~~Le~~Kt~ll~qn~elKr~~~E~~ 132 (373)
T KOG0561|consen 56 ERRMRREIANSNERRRMQSINAGFQSLRALLPRK---EGEKLSKAAILQQTADYIHQLEGHKTELLPQNGELKRLKLEED 132 (373)
T ss_pred HHHHHHHhhcchHHHHHHhhhHHHHHHHHhcCcc---cchhhHHHHHHHHHHHHHHHHHhcccccccccchHHHHHhhhc
Confidence 3457899999999999999999999999999985 7999999999999999999887642 45666666553
No 10
>KOG4447|consensus
Probab=99.19 E-value=7.3e-12 Score=103.26 Aligned_cols=72 Identities=36% Similarity=0.439 Sum_probs=60.9
Q ss_pred hHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC
Q psy5916 84 TVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQGTMTMPP 162 (190)
Q Consensus 84 ~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q~~~~~~~p~ 162 (190)
.+|.-||.|||+|-++||+||..||+.||+. +..|||||.||++|..||.+|.++|... -+++.....+++|
T Consensus 77 ~qrv~anvrerqRtqsLn~AF~~lr~iiptl---PsdklSkiqtLklA~ryidfl~~vl~s~----l~~~~~~~sc~yP 148 (173)
T KOG4447|consen 77 KQRVMANVRERQRTQSLNEAFAALRKIIPTL---PSDKLSKIQTLKLAARYIDFLYQVLQSD----LELDPKMQSCSYP 148 (173)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhcCCC---CccccccccchhhcccCCchhhhccccc----cccccccCCCCCC
Confidence 3799999999999999999999999999997 6689999999999999999999999765 2334444444443
No 11
>KOG1319|consensus
Probab=98.37 E-value=2e-06 Score=73.60 Aligned_cols=66 Identities=20% Similarity=0.292 Sum_probs=52.6
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCC---CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 85 VRLNINARERRRMHDLNDALDELRAVIPYAHSPS---VRKLSKIATLLLAKNYILMQANALEELRRIITY 151 (190)
Q Consensus 85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~---~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~ 151 (190)
||.+...-||+|...||.+|+.|+.+||.-. +. ..||||.-||..+|+||.+|..-......++..
T Consensus 62 rr~aHtqaEqkRRdAIk~GYddLq~LvP~cq-~~ds~g~KlskA~ILqksidyi~~L~~~k~kqe~e~s~ 130 (229)
T KOG1319|consen 62 RRRAHTQAEQKRRDAIKRGYDDLQTLVPTCQ-QQDSIGQKLSKAIILQKTIDYIQFLHKEKKKQEEEVST 130 (229)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHhccccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555677799999999999999999999742 33 369999999999999999998766444444443
No 12
>KOG1318|consensus
Probab=97.99 E-value=4.7e-05 Score=71.13 Aligned_cols=64 Identities=33% Similarity=0.384 Sum_probs=55.4
Q ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 82 GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELR 146 (190)
Q Consensus 82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~ 146 (190)
.+.+|..+|+=||+|--+||+...+|...||.... .+-|+.|--||..+++||.-|++.++.++
T Consensus 230 dr~Krd~HNeVERRRR~nIN~~IkeLg~liP~~~~-~~~~~nKgtILk~s~dYIr~Lqq~~q~~~ 293 (411)
T KOG1318|consen 230 DRRKRDNHNEVERRRRENINDRIKELGQLIPKCNS-EDMKSNKGTILKASCDYIRELQQTLQRAR 293 (411)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCCCc-chhhcccchhhHHHHHHHHHHHHHHHHHH
Confidence 34466679999999999999999999999998654 67888999999999999999998876443
No 13
>KOG2483|consensus
Probab=97.63 E-value=0.0005 Score=60.03 Aligned_cols=58 Identities=24% Similarity=0.267 Sum_probs=50.7
Q ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCC-HHHHHHHHHHHHHHHHHHH
Q psy5916 82 GKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLS-KIATLLLAKNYILMQANAL 142 (190)
Q Consensus 82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLS-KietLr~Ai~YI~~L~~~L 142 (190)
....|...|+=||+|-..|-+.|+.|+..||.. .+.+-+ -+.+|+.|..||..|+...
T Consensus 56 ~~~~R~~HN~LEk~RRahlk~~~~~Lk~~vP~~---~~~~~~t~lsiL~kA~~~i~~l~~~~ 114 (232)
T KOG2483|consen 56 AASSRAHHNALEKRRRAHLKDCFESLKDSVPLL---NGETRSTTLSILDKALEHIQSLERKS 114 (232)
T ss_pred CCcchhhhhhhhHHHHHHHHHHHHHHHHhCCCC---CCcchhhhhHhhhhHHHHHHHHHhHH
Confidence 455789999999999999999999999999997 455555 7999999999999887665
No 14
>KOG4447|consensus
Probab=96.54 E-value=0.0011 Score=55.19 Aligned_cols=56 Identities=21% Similarity=0.116 Sum_probs=47.4
Q ss_pred hHHhhhhHH-HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Q psy5916 84 TVRLNINAR-ERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANAL 142 (190)
Q Consensus 84 ~rR~~aN~R-ER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L 142 (190)
..+.-+|.| ||.|-+.+|+||..|+..+|.. ...+.+|+.||+.+-.||..|.++-
T Consensus 20 ~~~~~~r~~~e~~R~~~ls~~s~l~g~l~pgs---pa~gk~~~ktlr~~~~~~~~~dE~q 76 (173)
T KOG4447|consen 20 SEEECDRQRKERGRKRRLSDASTLLGKLEPGS---PADGKRGKKTLRIGTDSIQSLDELQ 76 (173)
T ss_pred hhhhhhhhHHHHhHHhhhhhhhhhccccCCCC---CCcccccccccccCCCchhhHHHHH
Confidence 345556666 9999999999999999999986 5577899999999999999887654
No 15
>KOG2588|consensus
Probab=96.19 E-value=0.0082 Score=61.18 Aligned_cols=58 Identities=29% Similarity=0.290 Sum_probs=52.1
Q ss_pred hhHHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Q psy5916 83 KTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEE 144 (190)
Q Consensus 83 ~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e 144 (190)
+.+|.+.|.=|++=--+||+-..+||+.||. ..-||.|-++||.||+||..|+.....
T Consensus 274 ~~kRtAHN~IEKRYRsSINDKI~eLk~lV~g----~~aKl~kSavLr~ai~~i~dl~~~nq~ 331 (953)
T KOG2588|consen 274 GEKRTAHNIIEKRYRSSINDKIIELKDLVPG----TEAKLNKSAVLRKAIDYIEDLQGYNQK 331 (953)
T ss_pred CcccchhhHHHHHhhcchhHHHHHHHHhcCc----cHhhhhhhhhHHHHHHHHHHhhccccc
Confidence 3789999999999999999999999999997 568999999999999999988766533
No 16
>PLN03217 transcription factor ATBS1; Provisional
Probab=96.12 E-value=0.022 Score=43.51 Aligned_cols=56 Identities=20% Similarity=0.275 Sum_probs=45.9
Q ss_pred HHHHHHHHHHHHhhCCCCCC-CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 97 MHDLNDALDELRAVIPYAHS-PSVRKLSKIATLLLAKNYILMQANALEELRRIITYI 152 (190)
Q Consensus 97 m~~lN~AF~~LR~~lP~~~~-p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~ 152 (190)
-.+||+-..+|+..||.... -...|.|-.++|+.+++||..|...++++-.-+.++
T Consensus 19 ddqi~dLvsKLq~llPe~r~~r~s~k~saskvLqEtC~YIrsLhrEvDdLSerLs~L 75 (93)
T PLN03217 19 EDQINDLIIKLQQLLPELRDSRRSDKVSAARVLQDTCNYIRNLHREVDDLSERLSEL 75 (93)
T ss_pred HHHHHHHHHHHHHHChHHHhhhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45799999999999998642 245688889999999999999999888876655554
No 17
>KOG4304|consensus
Probab=96.08 E-value=0.0063 Score=53.59 Aligned_cols=57 Identities=28% Similarity=0.322 Sum_probs=46.3
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCC---CCCCCCHHHHHHHHHHHHHHHHHH
Q psy5916 85 VRLNINARERRRMHDLNDALDELRAVIPYAHSP---SVRKLSKIATLLLAKNYILMQANA 141 (190)
Q Consensus 85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p---~~kKLSKietLr~Ai~YI~~L~~~ 141 (190)
++...=.=||+|-.-||+.+++||++|+....- ...||-|.+||.++.+|...|+..
T Consensus 32 rk~~Kpl~EKkRRaRIN~~L~eLK~Li~e~~~~~~~~~sklEKAdILEltV~hL~~l~~~ 91 (250)
T KOG4304|consen 32 RKVRKPLLEKKRRARINRCLDELKDLIPEALKKDGQRHSKLEKADILELTVNHLRQLQRS 91 (250)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHHHHHHHHHHHhcc
Confidence 444566779999999999999999999975321 127899999999999999988764
No 18
>KOG3561|consensus
Probab=95.73 E-value=0.018 Score=58.02 Aligned_cols=55 Identities=25% Similarity=0.373 Sum_probs=49.9
Q ss_pred HhhhhHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q psy5916 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANA 141 (190)
Q Consensus 86 R~~aN~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~ 141 (190)
|..+|.=||+|-..+|.=.++|-.+||... .-.+|+=|..|||+|+..|..+..+
T Consensus 21 Re~~~~~EKrRRdq~N~yI~ELs~Mvp~~~-~~~RK~DK~tVLr~aV~~lr~~k~~ 75 (803)
T KOG3561|consen 21 RENRSEIEKRRRDQMNKYIEELSEMVPTNA-SLSRKPDKLTVLRMAVDHLRLIKEQ 75 (803)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHhhhcch-hcccCchHHHHHHHHHHHHHHHhhh
Confidence 788999999999999999999999999963 3679999999999999999877764
No 19
>KOG3558|consensus
Probab=87.46 E-value=0.67 Score=46.59 Aligned_cols=43 Identities=23% Similarity=0.363 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy5916 93 ERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136 (190)
Q Consensus 93 ER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~ 136 (190)
-|.|--.=|+-|.+|.++||..+ .-.--|-|+.|+|+||.|..
T Consensus 54 ARsRRsKEn~~FyeLa~~lPlp~-aisshLDkaSimRLtISyLR 96 (768)
T KOG3558|consen 54 ARSRRSKENEEFYELAKLLPLPA-AISSHLDKASIMRLTISYLR 96 (768)
T ss_pred hhhhcccchHHHHHHHHhCCCcc-hhhhhhhhHHHHHHHHHHHH
Confidence 35566778999999999999765 36788999999999999985
No 20
>KOG3560|consensus
Probab=68.42 E-value=4.2 Score=40.37 Aligned_cols=36 Identities=33% Similarity=0.656 Sum_probs=31.0
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHH
Q psy5916 100 LNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136 (190)
Q Consensus 100 lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~ 136 (190)
||..+|.|..+||.... .--||-|+.+||+++.|+.
T Consensus 40 LNaELD~lAsLLPfpqd-iisKLDkLSVLRLSVSyLr 75 (712)
T KOG3560|consen 40 LNAELDHLASLLPFPQD-IISKLDKLSVLRLSVSYLR 75 (712)
T ss_pred hhhHHHHHHHhcCCCHH-HHhhhhhhhhhhhhHHHHH
Confidence 79999999999998521 3478999999999999985
No 21
>PF10392 COG5: Golgi transport complex subunit 5; InterPro: IPR019465 The conserved oligomeric Golgi (COG) complex is a peripheral membrane complex involved in intra-Golgi protein trafficking. Subunit 5 is located in the smaller, B lobe, together with subunits 6-8, and has been shown to bind subunits 1 and 7 [].
Probab=68.13 E-value=19 Score=28.28 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=35.8
Q ss_pred HHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 94 RRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIIT 150 (190)
Q Consensus 94 R~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~ 150 (190)
+..+..||..|++|+..|=..+ -+++.+..+.+=|.....+|...-+.+.
T Consensus 78 ~~~v~~L~~s~~RL~~eV~~Py-------~~~~~~~~~L~rl~~t~~LLR~~~r~l~ 127 (132)
T PF10392_consen 78 RSSVESLQSSYERLRSEVIEPY-------EKIQKLTSQLERLHQTSDLLRSVSRFLQ 127 (132)
T ss_pred HHHHHHHHHHHHHHHHHHhhHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4578999999999999883321 1677777777777777777766655544
No 22
>PF05308 Mito_fiss_reg: Mitochondrial fission regulator; InterPro: IPR007972 This family consists of several uncharacterised eukaryotic proteins of unknown function.
Probab=67.03 E-value=24 Score=31.29 Aligned_cols=25 Identities=28% Similarity=0.149 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 128 LLLAKNYILMQANALEELRRIITYI 152 (190)
Q Consensus 128 Lr~Ai~YI~~L~~~L~e~~~~~~~~ 152 (190)
=..|++=|..|++.|..++.+|+.|
T Consensus 117 ~~~AlqKIsALEdELs~LRaQIA~I 141 (253)
T PF05308_consen 117 NEAALQKISALEDELSRLRAQIAKI 141 (253)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3568999999999999999999876
No 23
>PF08651 DASH_Duo1: DASH complex subunit Duo1; InterPro: IPR013960 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=54.20 E-value=85 Score=23.05 Aligned_cols=44 Identities=18% Similarity=0.260 Sum_probs=29.1
Q ss_pred hHHHHHHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy5916 90 NARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIIT 150 (190)
Q Consensus 90 N~RER~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~ 150 (190)
=.||..-++.||.+|+.+-. +|+.|...|.......+....+++
T Consensus 3 L~kEL~~Lr~IN~~ie~~~~-----------------~L~~a~~~~~~v~~~~~~t~~LLd 46 (78)
T PF08651_consen 3 LEKELEQLRKINPVIEGLIE-----------------TLRSAKSNMNRVQETVESTNTLLD 46 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999998754 455555555555555555544444
No 24
>PLN02705 beta-amylase
Probab=51.97 E-value=1.3e+02 Score=30.48 Aligned_cols=29 Identities=24% Similarity=0.208 Sum_probs=23.8
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhCCC
Q psy5916 85 VRLNINARERRRMHDLNDALDELRAVIPY 113 (190)
Q Consensus 85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP~ 113 (190)
.|.....|||+|-..--.-|..||++=-+
T Consensus 84 e~e~~~~rer~rrai~~ki~aglr~~g~~ 112 (681)
T PLN02705 84 EKERTKLRERHRRAITSRMLAGLRQYGNF 112 (681)
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHhccCC
Confidence 45667789999999999999999997543
No 25
>KOG3559|consensus
Probab=51.03 E-value=16 Score=35.50 Aligned_cols=42 Identities=26% Similarity=0.404 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHH
Q psy5916 96 RMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQ 138 (190)
Q Consensus 96 Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L 138 (190)
|.+.=|-.|-+|.+.||.... -.-.|-|..++|++..||++-
T Consensus 12 RRekEN~EF~eLAklLPLa~A-ItsQlDKasiiRLtTsYlKmr 53 (598)
T KOG3559|consen 12 RREKENYEFYELAKLLPLASA-ITSQLDKASIIRLTTSYLKMR 53 (598)
T ss_pred HHHhhcchHHHHHhhccchhh-hhhccchhhhhhHHHHHHHHH
Confidence 344558899999999998642 445599999999999999743
No 26
>KOG4514|consensus
Probab=47.51 E-value=24 Score=30.73 Aligned_cols=58 Identities=12% Similarity=0.229 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy5916 97 MHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQA 154 (190)
Q Consensus 97 m~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q~ 154 (190)
++..|.|.+.|-+.+=..-...-.-|.|+|-|..++.-...|.+.+.+++++++.+..
T Consensus 163 vq~yr~aV~kl~d~~DanIK~~Y~lLAk~EEi~ksm~pv~~La~qir~irRlve~les 220 (222)
T KOG4514|consen 163 VQVYRNAVNKLTDTLDANIKCQYQLLAKAEEITKSMKPVEQLAQQIRQIRRLVEMLES 220 (222)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 3445666666666664432113355889999999999999999999999999987653
No 27
>COG3755 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.89 E-value=57 Score=26.42 Aligned_cols=17 Identities=24% Similarity=0.264 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHhhCCCC
Q psy5916 98 HDLNDALDELRAVIPYA 114 (190)
Q Consensus 98 ~~lN~AF~~LR~~lP~~ 114 (190)
..||.||..|..++...
T Consensus 51 a~LN~AY~~ll~~l~~~ 67 (127)
T COG3755 51 AELNKAYKALLKRLQDS 67 (127)
T ss_pred HHHHHHHHHHHHHhccC
Confidence 35999999999999863
No 28
>PF13815 Dzip-like_N: Iguana/Dzip1-like DAZ-interacting protein N-terminal
Probab=37.91 E-value=69 Score=24.70 Aligned_cols=21 Identities=19% Similarity=0.199 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q psy5916 125 IATLLLAKNYILMQANALEEL 145 (190)
Q Consensus 125 ietLr~Ai~YI~~L~~~L~e~ 145 (190)
+..++++|+|+.+.++.|...
T Consensus 61 frLaQl~ieYLl~~q~~L~~~ 81 (118)
T PF13815_consen 61 FRLAQLSIEYLLHCQEYLSSQ 81 (118)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 388899999999988877443
No 29
>PF05687 DUF822: Plant protein of unknown function (DUF822); InterPro: IPR008540 This group of proteins contains members of the BZR1/LAT61 family of plant transcriptional repressors involved in controlling the response to Brassinosteroids (BRs). BRs are plant hormones that play essential roles in growth and development. BZR1 binds directly to DNA repressing the synthesis of genes involved in BR synthesis. Phosphorylation of BZR1 by BIN1 targets BZR1 to the 20S proteosome, while dephosphorylation leads to nuclear accumulation of BZR1 [].
Probab=37.70 E-value=42 Score=27.98 Aligned_cols=28 Identities=36% Similarity=0.241 Sum_probs=22.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHhhCC
Q psy5916 85 VRLNINARERRRMHDLNDALDELRAVIP 112 (190)
Q Consensus 85 rR~~aN~RER~Rm~~lN~AF~~LR~~lP 112 (190)
-|.....|||+|-..--.-|..||.+==
T Consensus 11 ErEnnk~RERrRRAIaakIfaGLR~~Gn 38 (150)
T PF05687_consen 11 ERENNKRRERRRRAIAAKIFAGLRAHGN 38 (150)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 3455667999999888899999999743
No 30
>PF15552 DUF4657: Domain of unknown function (DUF4657)
Probab=32.47 E-value=1.2e+02 Score=27.70 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy5916 132 KNYILMQANALEELRRIIT 150 (190)
Q Consensus 132 i~YI~~L~~~L~e~~~~~~ 150 (190)
..|+.||+.+|+.|.++-.
T Consensus 126 LRYLEHLCLvLEqMArLQQ 144 (301)
T PF15552_consen 126 LRYLEHLCLVLEQMARLQQ 144 (301)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 5899999999999988765
No 31
>cd06257 DnaJ DnaJ domain or J-domain. DnaJ/Hsp40 (heat shock protein 40) proteins are highly conserved and play crucial roles in protein translation, folding, unfolding, translocation, and degradation. They act primarily by stimulating the ATPase activity of Hsp70s, an important chaperonine family. Hsp40 proteins are characterized by the presence of a J domain, which mediates the interaction with Hsp70. They may contain other domains as well, and the architectures provide a means of classification.
Probab=30.58 E-value=41 Score=21.33 Aligned_cols=18 Identities=17% Similarity=0.460 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy5916 92 RERRRMHDLNDALDELRA 109 (190)
Q Consensus 92 RER~Rm~~lN~AF~~LR~ 109 (190)
....+++.||+||+.|.+
T Consensus 38 ~~~~~~~~l~~Ay~~L~d 55 (55)
T cd06257 38 EAEEKFKEINEAYEVLSD 55 (55)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 345679999999999863
No 32
>smart00271 DnaJ DnaJ molecular chaperone homology domain.
Probab=30.15 E-value=41 Score=21.79 Aligned_cols=17 Identities=18% Similarity=0.479 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q psy5916 93 ERRRMHDLNDALDELRA 109 (190)
Q Consensus 93 ER~Rm~~lN~AF~~LR~ 109 (190)
-..++..||+||+.|..
T Consensus 41 ~~~~~~~l~~Ay~~L~~ 57 (60)
T smart00271 41 AEEKFKEINEAYEVLSD 57 (60)
T ss_pred HHHHHHHHHHHHHHHcC
Confidence 33479999999999975
No 33
>PF06602 Myotub-related: Myotubularin-like phosphatase domain; InterPro: IPR010569 This family represents a region within eukaryotic myotubularin-related proteins that is sometimes found with IPR004182 from INTERPRO. Myotubularin is a dual-specific lipid phosphatase that dephosphorylates phosphatidylinositol 3-phosphate and phosphatidylinositol (3,5)-bi-phosphate []. Mutations in gene encoding myotubularin-related proteins have been associated with disease [].; GO: 0016791 phosphatase activity, 0016311 dephosphorylation; PDB: 1M7R_B 1LW3_A 1ZVR_A 1ZSQ_A 2YF0_A.
Probab=27.15 E-value=1.2e+02 Score=27.86 Aligned_cols=59 Identities=17% Similarity=0.287 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy5916 95 RRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQAQG 156 (190)
Q Consensus 95 ~Rm~~lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~YI~~L~~~L~e~~~~~~~~q~~~ 156 (190)
.-+|.|-++|.+|+..+... ....-.++-..-...+|+.++..+|.-...++..+...+
T Consensus 173 ~nih~vr~s~~kl~~~~~~~---~~~~~~~~~~~le~s~Wl~~v~~~L~~a~~i~~~l~~~~ 231 (353)
T PF06602_consen 173 PNIHSVRDSFQKLRELCSNT---NSDNDDSWLSSLESSNWLDHVRSILSGASRIADLLHDEG 231 (353)
T ss_dssp --HHHHHHHHHHHHHHH-SS---SS--HHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred CcHHHHHHHHHHHHHHhccc---ccCCchhhhhccccCChHHHHHHHHHHHHHHHHHhhccC
Confidence 45788999999999999222 333344554455567899999999999999999986654
No 34
>PF15459 RRP14: 60S ribosome biogenesis protein Rrp14
Probab=25.30 E-value=71 Score=22.73 Aligned_cols=20 Identities=25% Similarity=0.418 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHhhCCCC
Q psy5916 95 RRMHDLNDALDELRAVIPYA 114 (190)
Q Consensus 95 ~Rm~~lN~AF~~LR~~lP~~ 114 (190)
.|++.=|.+|+.|-.+||.-
T Consensus 2 erl~~h~~~Fd~Ll~LIPAk 21 (64)
T PF15459_consen 2 ERLRAHSSFFDGLLSLIPAK 21 (64)
T ss_pred cHHHHHHHHHHHHHHhCChH
Confidence 37888899999999999953
No 35
>PF11279 DUF3080: Protein of unknown function (DUF3080); InterPro: IPR021431 Some members in this family of proteins are annotated as lipoproteins however this cannot be confirmed. Currently this family has no known function.
Probab=22.68 E-value=4.7e+02 Score=23.59 Aligned_cols=46 Identities=24% Similarity=0.122 Sum_probs=27.6
Q ss_pred HHHHHHHHHhhCCCCCCCCCCCCCHHHHHHHHHH--HHHHHHHHHHHH
Q psy5916 100 LNDALDELRAVIPYAHSPSVRKLSKIATLLLAKN--YILMQANALEEL 145 (190)
Q Consensus 100 lN~AF~~LR~~lP~~~~p~~kKLSKietLr~Ai~--YI~~L~~~L~e~ 145 (190)
||.+-+.|..+-...-++.++.-.|.++|+.... ||..++-.|.++
T Consensus 205 L~~~t~~L~~~~~~~lC~~~~~~~~~~~L~NVF~~~yi~~IQpylA~l 252 (316)
T PF11279_consen 205 LNQATQQLEQRDNSILCGPGRNTTKARILRNVFQKYYIEQIQPYLAQL 252 (316)
T ss_pred HHHHHHHHHcccCCCCCCCCCCchHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 4444444444422223567888899999999876 555444444443
No 36
>PF01213 CAP_N: Adenylate cyclase associated (CAP) N terminal; InterPro: IPR013992 Cyclase-associated proteins (CAPs) are highly conserved actin-binding proteins present in a wide range of organisms including yeast, fly, plants, and mammals. CAPs are multifunctional proteins that contain several structural domains. CAP is involved in species-specific signalling pathways [, , , ]. In Drosophila, CAP functions in Hedgehog-mediated eye development and in establishing oocyte polarity. In Dictyostelium (slim mold), CAP is involved in microfilament reorganisation near the plasma membrane in a PIP2-regulated manner and is required to perpetuate the cAMP relay signal to organise fruitbody formation. In plants, CAP is involved in plant signalling pathways required for co-ordinated organ expansion. In yeast, CAP is involved in adenylate cyclase activation, as well as in vesicle trafficking and endocytosis. In both yeast and mammals, CAPs appear to be involved in recycling G-actin monomers from ADF/cofilins for subsequent rounds of filament assembly [, ]. In mammals, there are two different CAPs (CAP1 and CAP2) that share 64% amino acid identity. All CAPs appear to contain a C-terminal actin-binding domain that regulates actin remodelling in response to cellular signals and is required for normal cellular morphology, cell division, growth and locomotion in eukaryotes. CAP directly regulates actin filament dynamics and has been implicated in a number of complex developmental and morphological processes, including mRNA localisation and the establishment of cell polarity. Actin exists both as globular (G) (monomeric) actin subunits and assembled into filamentous (F) actin. In cells, actin cycles between these two forms. Proteins that bind F-actin often regulate F-actin assembly and its interaction with other proteins, while proteins that interact with G-actin often control the availability of unpolymerised actin. CAPs bind G-actin. In addition to actin-binding, CAPs can have additional roles, and may act as bifunctional proteins. In Saccharomyces cerevisiae (Baker's yeast), CAP is a component of the adenylyl cyclase complex (Cyr1p) that serves as an effector of Ras during normal cell signalling. S. cerevisiae CAP functions to expose adenylate cyclase binding sites to Ras, thereby enabling adenylate cyclase to be activated by Ras regulatory signals. In Schizosaccharomyces pombe (Fission yeast), CAP is also required for adenylate cyclase activity, but not through the Ras pathway. In both organisms, the N-terminal domain is responsible for adenylate cyclase activation, but the S cerevisiae and S. pombe N-termini cannot complement one another. Yeast CAPs are unique among the CAP family of proteins, because they are the only ones to directly interact with and activate adenylate cyclase []. S. cerevisiae CAP has four major domains. In addition to the N-terminal adenylate cyclase-interacting domain, and the C-terminal actin-binding domain, it possesses two other domains: a proline-rich domain that interacts with Src homology 3 (SH3) domains of specific proteins, and a domain that is responsible for CAP oligomerisation to form multimeric complexes (although oligomerisation appears to involve the N- and C-terminal domains as well). The proline-rich domain interacts with profilin, a protein that catalyses nucleotide exchange on G-actin monomers and promotes addition to barbed ends of filamentous F-actin []. Since CAP can bind profilin via a proline-rich domain, and G-actin via a C-terminal domain, it has been suggested that a ternary G-actin/CAP/profilin complex could be formed. This entry represents the N-terminal domain of CAP proteins. This domain has an all-alpha structure consisting of six helices in a bundle with a left-handed twist and an up-and-down topology [].; GO: 0003779 actin binding, 0007010 cytoskeleton organization; PDB: 1TJF_B 1S0P_A.
Probab=22.03 E-value=1.3e+02 Score=27.49 Aligned_cols=25 Identities=16% Similarity=0.243 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhC
Q psy5916 132 KNYILMQANALEELRRIITYIQAQG 156 (190)
Q Consensus 132 i~YI~~L~~~L~e~~~~~~~~q~~~ 156 (190)
++|...+..+|+++..-|.+.+..|
T Consensus 182 veWvks~~~l~~~L~~YVke~httG 206 (312)
T PF01213_consen 182 VEWVKSFKALLKELQAYVKEHHTTG 206 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccC
Confidence 4666667777888887777776665
No 37
>PF02464 CinA: Competence-damaged protein; InterPro: IPR008136 CinA is the first gene in the competence-inducible (cin) operon, and is thought to be specifically required at some stage in the process of transformation []. This is a C-terminal region of putative competence-damaged proteins from the cin operon.; PDB: 2A9S_A.
Probab=21.08 E-value=97 Score=25.03 Aligned_cols=23 Identities=39% Similarity=0.471 Sum_probs=17.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhC
Q psy5916 89 INARERRRMHDLNDALDELRAVI 111 (190)
Q Consensus 89 aN~RER~Rm~~lN~AF~~LR~~l 111 (190)
...||..|.+..+.|++.|++.|
T Consensus 132 ~g~R~~ir~~~~~~al~~L~~~L 154 (154)
T PF02464_consen 132 PGDREEIRQRAVNQALDLLRRYL 154 (154)
T ss_dssp -S-HHHHHHHHHHHHHHHHH---
T ss_pred CCCHHHHHHHHHHHHHHHHHhhC
Confidence 45899999999999999999875
No 38
>KOG4395|consensus
Probab=20.93 E-value=18 Score=32.82 Aligned_cols=48 Identities=42% Similarity=0.612 Sum_probs=35.1
Q ss_pred chhHHhhhhHHHHHHHHHHHHHHHHHHhhCCC----CCCCCCCCCCHHHHHHHHHHHHHHHHH
Q psy5916 82 GKTVRLNINARERRRMHDLNDALDELRAVIPY----AHSPSVRKLSKIATLLLAKNYILMQAN 140 (190)
Q Consensus 82 ~~~rR~~aN~RER~Rm~~lN~AF~~LR~~lP~----~~~p~~kKLSKietLr~Ai~YI~~L~~ 140 (190)
.+.+|.-+|. ++++| |.+||. ...|...+|.|+-+++.+..||.++..
T Consensus 79 ~~~l~~~~n~-----a~e~~------~h~v~A~~~e~a~p~~~~l~~~~~~~~~k~~~~~~~~ 130 (285)
T KOG4395|consen 79 SKYLRKTANA-----AREIN------RHCVPAIKGEDAAPTNEKLTKITTLRLAKKYITMLTD 130 (285)
T ss_pred HHhhhhhhhH-----HHHHh------hhccccccccccCchhhhhhcccccccccCCCcCCcc
Confidence 4556666774 44455 788882 124678999999999999999987763
No 39
>KOG2675|consensus
Probab=20.50 E-value=3.5e+02 Score=26.47 Aligned_cols=26 Identities=12% Similarity=0.157 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhC
Q psy5916 131 AKNYILMQANALEELRRIITYIQAQG 156 (190)
Q Consensus 131 Ai~YI~~L~~~L~e~~~~~~~~q~~~ 156 (190)
.++|...+..++.|+..-|.+.+..|
T Consensus 185 hveWvKa~l~l~~eL~~YVk~hhtTG 210 (480)
T KOG2675|consen 185 HVEWVKAYLALFLELQAYVKEHHTTG 210 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 34556666666677776676665554
Done!