RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5916
(190 letters)
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 68
Score = 59.5 bits (144), Expect = 4e-13
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 3/68 (4%)
Query: 77 KKNRQGKTVRLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYIL 136
K+ R RERRR+ +N+A + L+ + ++L K+ L A YI
Sbjct: 4 KRKTTNADRRKAATMRERRRLSKVNEAFETLKRSTSSNPN---QRLPKVEILRNAIRYIE 60
Query: 137 MQANALEE 144
L +
Sbjct: 61 GLQALLRD 68
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 65
Score = 57.1 bits (138), Expect = 3e-12
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 3/59 (5%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSV-RKLSKIATLLLAKNYI--LMQANA 141
R N ERRR +N+ + +L +IP + S SK L A +YI L Q+N
Sbjct: 6 RAQHNEVERRRRDKINNWIVQLSKIIPDSSMESTKSGQSKGGILSKASDYIQELRQSNH 64
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 79
Score = 56.8 bits (137), Expect = 5e-12
Identities = 15/70 (21%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
R N E+ R L +L++L+ ++P P + + ++ L AK +I ++ +
Sbjct: 2 RSTHNEMEKNRRAHLRLSLEKLKGLVP--LGPDSSRHTTLSLLTKAKLHIKKLEDSDRKA 59
Query: 146 RRIITYIQAQ 155
I +Q +
Sbjct: 60 VHQIDQLQRE 69
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId:
9606]}
Length = 83
Score = 56.8 bits (137), Expect = 5e-12
Identities = 18/70 (25%), Positives = 28/70 (40%), Gaps = 3/70 (4%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
R + NA ER+R + D+ LR +P K S+ L A YI
Sbjct: 3 RAHHNALERKRRDHIKDSFHSLRDSVPSLQGE---KASRAQILDKATEYIQYMRRKNHTH 59
Query: 146 RRIITYIQAQ 155
++ I ++ Q
Sbjct: 60 QQDIDDLKRQ 69
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 88
Score = 56.5 bits (136), Expect = 1e-11
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
R N ER+R ++L + LR IP + K K+ L A YIL ++L
Sbjct: 7 RRTHNVLERQRRNELKRSFFALRDQIP--ELENNEKAPKVVILKKATAYILSVQAEEQKL 64
Query: 146 RRIITYIQAQ 155
++ +
Sbjct: 65 ISEEDLLRKR 74
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 63
Score = 52.6 bits (126), Expect = 1e-10
Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIP--YAHSPSVRKLSKIATLLLAKNYI 135
R + E+ R + L AL EL ++IP + SK T+ A YI
Sbjct: 3 RESHKHAEQARRNRLAVALHELASLIPAEWKQQNVSAAPSKATTVEAACRYI 54
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 48.0 bits (114), Expect = 1e-08
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 86 RLNINARERRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEEL 145
R NA E+R +ND + EL+ ++ + KL+K A L A +YI ++ ++L
Sbjct: 7 RTAHNAIEKRYRSSINDKIIELKDLVV----GTEAKLNKSAVLRKAIDYIRFLQHSNQKL 62
Query: 146 RRIITYIQAQ 155
++ ++
Sbjct: 63 KQENLSLRTA 72
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 61
Score = 27.8 bits (62), Expect = 0.17
Identities = 13/62 (20%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 94 RRRMHDLNDALDELRAVIPYAHSPSVRKLSKIATLLLAKNYILMQANALEELRRIITYIQ 153
R + ND + EL+ ++ + K+ K L A +YI +LR+ ++
Sbjct: 1 RSSI---NDKIIELKDLVM----GTDAKMHKSGVLRKAIDYIKYLQQVNHKLRQENMVLK 53
Query: 154 AQ 155
Sbjct: 54 LA 55
>d1h3da2 d.58.5.3 (A:225-299) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), regulatory C-terminal domain
{Escherichia coli [TaxId: 562]}
Length = 75
Score = 26.1 bits (58), Expect = 0.97
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 97 MHDLNDALDELRAVIPYAHSPSVRKLSK 124
MH + LDE+ A++P A P++ L+
Sbjct: 7 MHAPTERLDEVIALLPGAERPTILPLAG 34
>d1lvaa4 a.4.5.35 (A:575-634) C-terminal fragment of elongation
factor SelB {Moorella thermoacetica [TaxId: 1525]}
Length = 60
Score = 25.5 bits (56), Expect = 1.2
Identities = 6/20 (30%), Positives = 10/20 (50%)
Query: 141 ALEELRRIITYIQAQGTMTM 160
AL E R +I + + G +
Sbjct: 2 ALGEAREVIKNLASTGPFGL 21
>d1nh8a2 d.58.5.3 (A:211-284) ATP phosphoribosyltransferase
(ATP-PRTase, HisG), regulatory C-terminal domain
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 74
Score = 25.3 bits (56), Expect = 1.8
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 101 NDALDELRAVIPYAHSPSVRKLSK 124
AL + A+ P SP++ L+
Sbjct: 11 RSALKKATAITPGLESPTIAPLAD 34
>d2cc0a1 c.6.2.3 (A:1-192) Acetyl-xylan esterase {Streptomyces
lividans [TaxId: 1916]}
Length = 192
Score = 25.6 bits (55), Expect = 3.5
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 117 PSVRKLSKIATLLLAKNYILM---QANALEELRRIITYIQAQG 156
S + + + L ILM AN L + RI + +G
Sbjct: 134 ASTDAIVQAVSRLGNGQVILMHDWPANTLAAIPRIAQTLAGKG 176
>d1e6ba1 a.45.1.1 (A:88-220) Class zeta GST {Mouse-ear cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 133
Score = 24.4 bits (52), Expect = 7.0
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 171 LPVQQPDTPPPS 182
LP +QPD P +
Sbjct: 122 LPEKQPDAPSST 133
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.313 0.130 0.376
Gapped
Lambda K H
0.267 0.0473 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 689,847
Number of extensions: 29692
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 13
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.7 bits)