BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5919
(387 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1
SV=2
Length = 3130
Score = 157 bits (396), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/234 (39%), Positives = 127/234 (54%), Gaps = 52/234 (22%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++M+ P+ D S L ++KVPV+RVFG G+KTC+ +HG+FPY
Sbjct: 1 MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 61 LYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE 120
LY+P Y + +
Sbjct: 61 LYVP-------------------------------------------------YDGYGQQ 71
Query: 121 PITETMLQQLAASIDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYE 179
P E+ L Q+A SID+ALN+ALG S QHVF +S+ P YGYH ER F+KI LY
Sbjct: 72 P--ESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYN 129
Query: 180 PYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
P + ++ +LL +GA+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 130 PTMVKRICELLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1
SV=3
Length = 3122
Score = 154 bits (390), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/237 (40%), Positives = 129/237 (54%), Gaps = 58/237 (24%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++M+ P+ D TC
Sbjct: 1 MFSVRIVTADYYMASPLPGLD----------------------------TC--------- 23
Query: 61 LYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-- 118
S L L ++KVPV+RVFG G+KTC+ +HG+FPYLY+P+
Sbjct: 24 ---------------QSPLTQLPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYDGY 68
Query: 119 -HEPITETMLQQLAASIDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKIL 176
+P E+ L Q+A SID+ALN+ALG S QHVF +S+ P YGYH ER F+KI
Sbjct: 69 GQQP--ESYLSQMAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIY 126
Query: 177 LYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
LY P + ++ +LL +GA+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 127 LYNPAMVKRICELLQSGAIMNKCYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/190 (38%), Positives = 102/190 (53%), Gaps = 22/190 (11%)
Query: 81 NLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETM-------LQQLAAS 133
N + VPVIRVFG N E + C F+H VFPY+Y+ + ET+ L QL S
Sbjct: 30 NEELTTVPVIRVFGLNEEAETVCCFIHNVFPYIYVEYSS--FAETLDLEVPDFLSQLQTS 87
Query: 134 IDKALNIAL-----GYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLED 188
I+ AL +A YK +VQ V + K P YGY + FLKI L+ P + +L D
Sbjct: 88 INYALALAARANPETYKPAVQSV---QLVKGIPFYGYSFCFQKFLKICLFSPKNRDRLVD 144
Query: 189 LLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQL 248
L GA+ N+ Q YESH+PY+LQF +D+NLYG + I+ + + D LS C +
Sbjct: 145 LFRQGAILNKVIQVYESHLPYLLQFMVDHNLYGCAPIDLDDSIIKRDD-----LLSFCNV 199
Query: 249 EADVKAESIV 258
E V +I+
Sbjct: 200 EVHVSPNAIL 209
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1
Length = 1504
Score = 105 bits (263), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 75/238 (31%), Positives = 114/238 (47%), Gaps = 45/238 (18%)
Query: 2 FSMNIVTIDFFMSKPIAHFDPVHSELRNL-VIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
F + + D++MSKP DP H E L +VP IRVFG G + VHG+ PY
Sbjct: 23 FRIQLNNQDYYMSKP-TFLDPSHGESLPLNQFSQVPNIRVFGALPTGHQVLCHVHGILPY 81
Query: 61 LYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE 120
++I + + IT+T S LR+ + C VH
Sbjct: 82 MFIKYDGQ-ITDT---STLRH-------------------QRCAQVH------------- 105
Query: 121 PITETMLQQLAASI----DKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKIL 176
+T+ ++ AS D ++A ++ V +S+ K P YGYH F KI
Sbjct: 106 ---KTLEVKIRASFKRKKDDKHDLAGDKLGNLNFVADVSVVKGIPFYGYHVGWNLFYKIS 162
Query: 177 LYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRS 234
L P +S++ +L+ +G +F ++F+ YESHIPY+LQ+ D+NL+G S I + FRS
Sbjct: 163 LLNPSCLSRISELIRDGKIFGKKFEIYESHIPYLLQWTADFNLFGCSWINVDRCYFRS 220
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 54/177 (30%), Positives = 90/177 (50%), Gaps = 19/177 (10%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E ++E + ++L+A+I + +
Sbjct: 121 VPILRAFGVTNEGVSVCCHIHGFAPYFYTPAPPGFGPEHLSE-LQRELSAAISR--DQRG 177
Query: 143 GYKDSVQHVFHISICKKFPMYGYHA-DERTFLKILLYEPYHMSKLEDLLLNG----AVFN 197
G + + V + +C + M+GYH FL+I L P M+ LL G +
Sbjct: 178 GKELTGPAVLAVELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLGT 237
Query: 198 ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKF--RSDSETSLPKLSHCQLEADV 252
F PYE+++ + ++F +D ++ G + +E K+ R + + +L CQLEADV
Sbjct: 238 PSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYILRPEGKATL-----CQLEADV 289
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus
GN=Pold1 PE=2 SV=1
Length = 1103
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E ++E + ++L A+I + +
Sbjct: 118 VPILRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGAEHLSE-LQRELNAAISR--DQRG 174
Query: 143 GYKDSVQHVFHISICKKFPMYGYHA-DERTFLKILLYEPYHMSKLEDLLLNG----AVFN 197
G + S V I +C + M+GYH FL+I L P M+ LL G +
Sbjct: 175 GKELSGPAVLAIELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGT 234
Query: 198 ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADV 252
F PYE+++ + ++F +D ++ G + +E K+ +E K + CQLE DV
Sbjct: 235 PSFAPYEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEK---KATLCQLEVDV 286
Score = 37.4 bits (85), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 35 VPVIRVFGNNIEGKKTCVFVHGVFPYLYIP 64
VP++R FG EG C +HG PY Y P
Sbjct: 118 VPILRAFGVTDEGFSVCCHIHGFAPYFYTP 147
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1
PE=1 SV=2
Length = 1105
Score = 81.3 bits (199), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/175 (31%), Positives = 86/175 (49%), Gaps = 15/175 (8%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C + G PY Y P F E ++E + Q+L A+I + +
Sbjct: 120 VPILRAFGVTDEGFSVCCHIQGFAPYFYTPAPPGFGAEHLSE-LQQELNAAISR--DQRG 176
Query: 143 GYKDSVQHVFHISICKKFPMYGYHA-DERTFLKILLYEPYHMSKLEDLLLNG----AVFN 197
G + S V I +C + M+GYH FL+I L P M+ LL G +
Sbjct: 177 GKELSGPAVLAIELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGVRVPGLGT 236
Query: 198 ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADV 252
F PYE+++ + ++F +D ++ G + +E K+ +E K + CQLE DV
Sbjct: 237 PSFAPYEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEK---KATLCQLEVDV 288
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 35 VPVIRVFGNNIEGKKTCVFVHGVFPYLYIP 64
VP++R FG EG C + G PY Y P
Sbjct: 120 VPILRAFGVTDEGFSVCCHIQGFAPYFYTP 149
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 79.3 bits (194), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 15/175 (8%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E +++ + ++L+ +I + +
Sbjct: 118 VPILRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGAEHLSD-LQRELSTAISR--DQRG 174
Query: 143 GYKDSVQHVFHISICKKFPMYGYHA-DERTFLKILLYEPYHMSKLEDLLLNG----AVFN 197
G + S V I +C + M+GYH FL+I L P ++ LL G +
Sbjct: 175 GKELSGPAVLAIELCSRESMFGYHGHGPSPFLRITLALPRLVAPARRLLEQGIRVPGLGT 234
Query: 198 ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADV 252
F PYE+++ + ++F +D ++ G + +E K+ +E K + CQLE DV
Sbjct: 235 PSFAPYEANVDFEIRFMVDADIVGCNWLELPAGKYVWRTEK---KATQCQLEVDV 286
Score = 37.4 bits (85), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 35 VPVIRVFGNNIEGKKTCVFVHGVFPYLYIP 64
VP++R FG EG C +HG PY Y P
Sbjct: 118 VPILRAFGVTDEGFSVCCHIHGFAPYFYTP 147
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1
PE=1 SV=2
Length = 1107
Score = 76.3 bits (186), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 52/183 (28%), Positives = 84/183 (45%), Gaps = 19/183 (10%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIAL---- 142
VPV+R FG EG C +HG PY Y P E M + + LN+A+
Sbjct: 122 VPVLRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGPEHM-----GDLQRELNLAISRDS 176
Query: 143 --GYKDSVQHVFHISICKKFPMYGYHA-DERTFLKILLYEPYHMSKLEDLLLNG----AV 195
G + + V + +C + M+GYH FL+I + P ++ LL G +
Sbjct: 177 RGGRELTGPAVLAVELCSRESMFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRVAGL 236
Query: 196 FNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAE 255
F PYE+++ + ++F +D ++ G + +E K+ + K + CQLEADV
Sbjct: 237 GTPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYALRLKE---KATQCQLEADVLWS 293
Query: 256 SIV 258
+V
Sbjct: 294 DVV 296
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 17/30 (56%)
Query: 35 VPVIRVFGNNIEGKKTCVFVHGVFPYLYIP 64
VPV+R FG EG C +HG PY Y P
Sbjct: 122 VPVLRAFGVTDEGFSVCCHIHGFAPYFYTP 151
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 75.1 bits (183), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 55/177 (31%), Positives = 93/177 (52%), Gaps = 9/177 (5%)
Query: 84 IQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASID-KALNIAL 142
I VPV+R+FG +EG C VHG PY YI + E ++L ++D K +
Sbjct: 99 IGPVPVVRMFGVTMEGNSVCCHVHGFCPYFYIEAPSQ-FEEHHCEKLQKALDQKVIADIR 157
Query: 143 GYKDSVQH-VFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGAVFNE-R 199
KD+VQ V + + +K ++GY+ D++ ++KI + P ++ LL + +E
Sbjct: 158 NNKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKISVTLPRFVAAASRLLKKEVIMSEID 217
Query: 200 FQ---PYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLP-KLSHCQLEADV 252
FQ +E++I + ++F +D ++ G + IE M +R + S P S CQ+E DV
Sbjct: 218 FQDCRAFENNIDFDIRFMVDTDVVGCNWIELPMGHWRIRNSHSKPLPESRCQIEVDV 274
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/180 (30%), Positives = 84/180 (46%), Gaps = 12/180 (6%)
Query: 76 HSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYI--PFHHEPITETMLQQLAAS 133
H EL + P+IR+FG EG C FVHG PY YI P P + Q
Sbjct: 110 HKELLPGSSGQAPIIRMFGVTREGNSVCCFVHGFEPYFYIACPPGMGPDDISNFHQSLEG 169
Query: 134 IDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNG 193
+ N V+ + + K+ MY +TFLKI + P ++ +L G
Sbjct: 170 RMRESNKNAKVPKFVKRIEMVQ--KRSIMYYQQQKSQTFLKITVALPTMVASCRGILDRG 227
Query: 194 AVFN----ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLE 249
+ + FQ YES+I ++L+F +D ++ G + IE K++ ++ T LS+CQLE
Sbjct: 228 LQIDGLGMKSFQTYESNILFVLRFMVDCDIVGGNWIEVPTGKYKKNART----LSYCQLE 283
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/40 (47%), Positives = 22/40 (55%)
Query: 24 HSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYI 63
H EL + P+IR+FG EG C FVHG PY YI
Sbjct: 110 HKELLPGSSGQAPIIRMFGVTREGNSVCCFVHGFEPYFYI 149
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 94/192 (48%), Gaps = 19/192 (9%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYI---PFHHEPITETMLQQLAASIDKALNIALG 143
+P IR+FG EG VHG PY +I P E +++ L S+ + N +
Sbjct: 127 LPAIRLFGVTKEGNSVLCKVHGFLPYFFISCPPGFTEADCKSLKHDLNESMKMSSNQS-N 185
Query: 144 YKDSVQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLL--------LNGA 194
KD V I I KK + GY+ + + F++I L P +++ ++ + G
Sbjct: 186 EKDIENIVVSIDIEKKKSIMGYNPNPLSDFIRITLILPKFVTRCREIFESGRHHFTIPGQ 245
Query: 195 VFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKA 254
F + +Q YES+I + L+F ID + G S IE ++ SET +S CQ+E D
Sbjct: 246 PFRQ-YQTYESNILFALRFLIDKGITGCSWIELPANTYKL-SETP---VSTCQIEVDTSL 300
Query: 255 ESIVVDMAANDS 266
E+I + ++ +DS
Sbjct: 301 ETI-ISLSDDDS 311
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 64.7 bits (156), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 49/182 (26%), Positives = 84/182 (46%), Gaps = 24/182 (13%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYI--PFHHEPITETMLQQLAASIDKALNIALGY 144
VP IR+FG G V V G PY Y+ P P ML++ +D N +
Sbjct: 113 VPSIRLFGVTDNGNSILVHVVGFLPYFYVKAPVGFRP---EMLERFTQDLDATCNGGV-- 167
Query: 145 KDSVQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGAVFNERFQP- 202
+ H I K +YG+ +E++ F+KI P +S+ ++ G E P
Sbjct: 168 ------IDHCIIEMKENLYGFQGNEKSPFIKIFTTNPRILSRARNVFERGEFNFEELFPV 221
Query: 203 ------YESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAES 256
+ES+ Y+L+F ID ++ GM+ I K++ + ++S+CQ+EA + +
Sbjct: 222 GVGVTTFESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQN---RVSNCQIEAWINYKD 278
Query: 257 IV 258
++
Sbjct: 279 LI 280
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 51/182 (28%), Positives = 82/182 (45%), Gaps = 12/182 (6%)
Query: 76 HSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYI--PFHHEPITETMLQQLAAS 133
H EL V +IR+FG EG C VHG PY YI P P + Q
Sbjct: 75 HGELLPNSSGPVAIIRIFGVTKEGHSVCCNVHGFEPYFYICCPPGMGPDDISHFHQTLEG 134
Query: 134 IDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNG 193
+ N V+ + + ++ MY ++ + FLKI++ P ++ +L G
Sbjct: 135 RMREANRNSNVGKFVRRIEMVQ--RRSIMYYQQSNSQPFLKIVVALPTMVASCRGILDRG 192
Query: 194 AVFN----ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLE 249
+ + F YES++ + L+F ID N+ G + I K++ +++ LS+CQLE
Sbjct: 193 IQLDGLGMKSFLTYESNVLFALRFMIDCNIVGGNWIGIPAGKYKKTAKS----LSYCQLE 248
Query: 250 AD 251
D
Sbjct: 249 FD 250
Score = 36.2 bits (82), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 20/40 (50%)
Query: 24 HSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYI 63
H EL V +IR+FG EG C VHG PY YI
Sbjct: 75 HGELLPNSSGPVAIIRIFGVTKEGHSVCCNVHGFEPYFYI 114
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 58.9 bits (141), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 47/170 (27%), Positives = 80/170 (47%), Gaps = 14/170 (8%)
Query: 89 VIRVFGNNVEGKKTCVFVHGVFPYLYI--PFHHEPITETMLQQLAASIDKALNIALGYKD 146
++R+FG EG C VHG PY YI P P + Q +++ + + +
Sbjct: 131 ILRIFGVTREGHSVCCQVHGFEPYFYISCPMGMGPDDISRFHQ---TLEGRMKDSNRNSN 187
Query: 147 SVQHVFHISICKKFPMYGYHADE-RTFLKILLYEPYHMSKLEDLLLNG----AVFNERFQ 201
+ V I + +K + Y + + FLKI++ P ++ +L G + ++ F
Sbjct: 188 VPRFVKRIELVQKQTIMHYQPQQSQPFLKIVVALPTMVASCRGILERGITIEGLGSKSFL 247
Query: 202 PYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEAD 251
YES+I + L+F ID N+ G + IE K+ + +S+CQLE D
Sbjct: 248 TYESNILFALRFMIDCNIVGGNWIEVPAGKYMKAARI----MSYCQLELD 293
Score = 33.5 bits (75), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 37 VIRVFGNNIEGKKTCVFVHGVFPYLYI 63
++R+FG EG C VHG PY YI
Sbjct: 131 ILRIFGVTREGHSVCCQVHGFEPYFYI 157
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 93/201 (46%), Gaps = 16/201 (7%)
Query: 61 LYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE 120
+Y+P+ I+ S+ +N V VP+IR++ +G + VH FPY Y+ +
Sbjct: 99 IYMPYR-------ILLSKDKNYV--SVPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDD 149
Query: 121 PITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFP-MYGYHADERTFLKILLYE 179
E ++ +L +++ LN+ YK + + I I K MY ++ FLKI +
Sbjct: 150 FDNEDLI-KLEMLMNENLNLNSQYKIYEKKILKIEIVKTESLMYFKKNGKKDFLKITVLL 208
Query: 180 PYHMSKLEDLLLNGAVFNERFQP---YESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDS 236
P + L+ N + YE+++P+IL++ ID+ + G S I N K
Sbjct: 209 PKMVPSLKKYFEGIVHVNNKSIGGIVYEANLPFILRYIIDHKITGSSWI--NCKKGHYYI 266
Query: 237 ETSLPKLSHCQLEADVKAESI 257
K+S+C E D+ E +
Sbjct: 267 RNKNKKISNCTFEIDISYEHV 287
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 78/184 (42%), Gaps = 18/184 (9%)
Query: 89 VIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGY-KDS 147
V+R FG EG V G YLY+P + A+ + +N + Y ++
Sbjct: 136 VVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSS---------DANDQEQINKFVHYLNET 186
Query: 148 VQHVF-HISICKKFPMYGYHADER-TFLKILLYEPYHMSKLEDLLLNGAV-FNERFQPYE 204
H I + K ++GY D + F KI + P+ ++KL G + FN F
Sbjct: 187 FDHAIDSIEVVSKQSIWGYSGDTKLPFWKIYVTYPHMVNKLRTAFERGHLSFNSWFSNGT 246
Query: 205 S---HIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDM 261
+ +I Y L+ +D + GMS I K+ + ++S CQLE + +++
Sbjct: 247 TTYDNIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNN--RVSSCQLEVSINYRNLIAHP 304
Query: 262 AAND 265
A D
Sbjct: 305 AEGD 308
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/163 (24%), Positives = 72/163 (44%), Gaps = 16/163 (9%)
Query: 78 ELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKA 137
+ R+ VI VI++FG GKK C+ V G Y Y + + ++L + I
Sbjct: 104 QYRHFVIPSGNVIKLFGKTECGKKVCINVFGQNSYFYCEYQCK-------KELNSRICSL 156
Query: 138 LNIALGYKDSVQHVFHISICKKFPMYGYHADE-RTFLKILLYEPYHMSKLEDLLLNGAVF 196
LN + + + F I K+ YGY+ + + K+ Y +++ +LLN V
Sbjct: 157 LNSS---EIKMSCSFSIESVTKYNFYGYNTEPIKNLFKLSFSNFYISNRIGKILLNEGV- 212
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETS 239
YE+ + + +F ID NL + N + + +++S
Sbjct: 213 ----SVYEAEVEILNRFFIDNNLKSFGWYQINYLSIQEFAKSS 251
Score = 34.7 bits (78), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 42/98 (42%), Gaps = 16/98 (16%)
Query: 26 ELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQ 85
+ R+ VI VI++FG GKK C+ V G Y Y + + + + S L
Sbjct: 104 QYRHFVIPSGNVIKLFGKTECGKKVCINVFGQNSYFYCEYQCKKELNSRICSLL------ 157
Query: 86 KVPVIRVFGNNVEGKKTCVF-VHGVFPYLYIPFHHEPI 122
N+ E K +C F + V Y + ++ EPI
Sbjct: 158 ---------NSSEIKMSCSFSIESVTKYNFYGYNTEPI 186
>sp|P28857|DPOL_HHV6U DNA polymerase OS=Human herpesvirus 6A (strain Uganda-1102) GN=U38
PE=3 SV=1
Length = 1012
Score = 43.1 bits (100), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 81/179 (45%), Gaps = 24/179 (13%)
Query: 58 FPYLYIPFHHEPITETIVHS--------ELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGV 109
+ ++ + FH ET++ + + R+ VI VIR+FG +G+K CV V G
Sbjct: 77 YDHMRMKFHIYDAVETLMFTDSIENLPFQYRHFVIPSGTVIRMFGRTEDGEKICVNVFGQ 136
Query: 110 FPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADE 169
Y Y E + + L A+I+ N+ L + + F I K +YGY+A+
Sbjct: 137 EQYFYC----ECVDG---RSLKATIN---NLMLTGEVKMSCSFVIEPADKLSLYGYNANT 186
Query: 170 RTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNL--YGMSNIE 226
L + + +++S+ +L NE F YE + + +F +D +G N++
Sbjct: 187 VVNLFKVSFGNFYVSQRIGKILQ----NEGFVVYEIDVDVLTRFFVDNGFLSFGWYNVK 241
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 26 ELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLY 62
+ R+ VI VIR+FG +G+K CV V G Y Y
Sbjct: 105 QYRHFVIPSGTVIRMFGRTEDGEKICVNVFGQEQYFY 141
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain
Z29) GN=U38 PE=3 SV=1
Length = 1012
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/151 (27%), Positives = 71/151 (47%), Gaps = 16/151 (10%)
Query: 78 ELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKA 137
+ R+ VI VIR+FG + +G+K CV V G Y Y E + + L A+I+
Sbjct: 105 QYRHFVIPSGTVIRMFGRSEDGEKICVNVFGQEQYFYC----ECVDG---KSLKATIN-- 155
Query: 138 LNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFN 197
N+ L + + F I K +YGY+A+ L + + +++S+ +L N
Sbjct: 156 -NLMLTGEVKMSCSFVIEPADKLSLYGYNANTVVNLFKVSFGNFYVSQRIGKILQ----N 210
Query: 198 ERFQPYESHIPYILQFCIDYNL--YGMSNIE 226
E F YE + + +F +D +G N++
Sbjct: 211 EGFVVYEIDVDVLTRFFVDNGFLSFGWYNVK 241
Score = 32.7 bits (73), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%)
Query: 26 ELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLY 62
+ R+ VI VIR+FG + +G+K CV V G Y Y
Sbjct: 105 QYRHFVIPSGTVIRMFGRSEDGEKICVNVFGQEQYFY 141
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 41.2 bits (95), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 70/172 (40%), Gaps = 25/172 (14%)
Query: 91 RVFGNNVEGKKTCVFVHGVFPYLYIPF---HHEPITETMLQQLAASIDKALNIALGYKDS 147
R FG EG V G Y Y P E +TE L A+ D + + K+S
Sbjct: 80 RFFGITQEGHSVLCNVTGFIHYFYCPVPKGFEENLTE-FTNYLKATFDGIERVEITSKES 138
Query: 148 VQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESH 206
+ +GY + +T F KI + ++SK+ NG V N +
Sbjct: 139 I--------------WGYSNNIKTPFFKI--FAKNNISKIRSAFQNGQVHNIDPCITYDN 182
Query: 207 IPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIV 258
I Y+L+ ID + GMS I K++ + K+S CQ+E + ++
Sbjct: 183 INYLLRLMIDCKITGMSWITLPRDKYKIVNN----KISTCQIECSIDYRDLI 230
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 40.0 bits (92), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 59/247 (23%), Positives = 104/247 (42%), Gaps = 35/247 (14%)
Query: 90 IRVFGNNVEGKKTCVFVHGVFPYLYIP------FHHEPITETMLQQLAASIDKALNIALG 143
++++G G CV V FP+ Y H ++ + + A+ +
Sbjct: 86 VKLYGVTKSGNSICVIVTDYFPHFYFQAPQGFGVEHIGTAQSAICNMVAAAKRRGGSGQA 145
Query: 144 Y--KDSVQHVFHISICKKFPMYGYH-ADERT-FLKIL-LYEPYHMSKLE-----DLLLNG 193
V ++ H+ I +Y + AD + F+K+ E H +++E +L+ G
Sbjct: 146 QLPGKVVDNLVHVEIVHGENLYYFRGADTKVPFVKVSGSTEALHKARMELKNGVNLMGKG 205
Query: 194 AVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR--SDSETSLPKLSHCQLEAD 251
V YES+I I+ F N+ G IE K R S+SE S S CQ+E
Sbjct: 206 PVNVGNL--YESNINVIVMFLAKTNIVGCGWIEIPAGKCRILSNSEKS----SRCQIEVT 259
Query: 252 VKAESIVVDMAANDSDVATSG-GITRYLS-DVLLNSMRAILLGQEPHLLMDPDVYSMQDL 309
V ++++V ++SD +G R LS D+ R + P + DP + + +L
Sbjct: 260 VPVKNLIV----HESDGEWAGIAPIRTLSLDIECIGRRGVF----PEAIKDP-IIQIANL 310
Query: 310 LDVKSGA 316
+ ++ A
Sbjct: 311 VKIEGEA 317
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3
SV=2
Length = 1117
Score = 38.5 bits (88), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 44/194 (22%), Positives = 77/194 (39%), Gaps = 28/194 (14%)
Query: 80 RNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALN 139
R V+ VIR+FG +G CV V G Y Y + +E L +++ K
Sbjct: 127 RRHVVPCGNVIRMFGRTCDGSSVCVNVFGQPSYFYCEYDG---SEGYLDNYLSTVLKET- 182
Query: 140 IALGYKDSVQHVFHISICK--KFPMYGYHAD--ERTFLKILLYEPYHMSKLEDLLLNGAV 195
+D + VF + + K+ ++GY+ E + L P ++L G
Sbjct: 183 -----EDVTKIVFTLDAQRVHKYSLFGYNTKYIENLYRVTLNNWPVCKRLAQNLQSRG-- 235
Query: 196 FNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAE 255
+ YE+ + + +FC+D + RS S C +E D +
Sbjct: 236 ----LRVYEAGVDPVARFCVDRKIPSFGWCVIKRFYARSSGLASF-----CDIEIDCE-- 284
Query: 256 SIVVDMAANDSDVA 269
+ D+ A+DSD++
Sbjct: 285 --IGDVEADDSDMS 296
>sp|Q6DJB3|DEFI8_XENTR Differentially expressed in FDCP 8 homolog OS=Xenopus tropicalis
GN=def8 PE=2 SV=1
Length = 443
Score = 35.4 bits (80), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 333 MRAILLGQ---EPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHV-YNCEPTNA 387
M A LL Q H + + D+YS+QDLLD+ SG L L ++ + + H+ +CE A
Sbjct: 323 MEARLLLQLQDRQHFVENDDMYSLQDLLDISSGRLGCSLTEIHTTFAKHIKLDCERCQA 381
Score = 32.7 bits (73), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 284 NSMRAILLGQ---EPHLLMDPDVYSMQDLLDVKSGALYLKLKDL 324
+M A LL Q H + + D+YS+QDLLD+ SG L L ++
Sbjct: 321 EAMEARLLLQLQDRQHFVENDDMYSLQDLLDISSGRLGCSLTEI 364
>sp|Q6DDJ3|DFI8A_XENLA Differentially expressed in FDCP 8 homolog A OS=Xenopus laevis
GN=def8-a PE=2 SV=1
Length = 443
Score = 35.0 bits (79), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 333 MRAILLGQ---EPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHV-YNCEPTNA 387
M A LL Q H + + D+YS+QDLLD+ SG L L ++ + + H+ +CE A
Sbjct: 323 MEARLLLQLQDRQHFVENDDMYSLQDLLDISSGRLGCTLTEIHTTFAKHIKLDCERCQA 381
Score = 32.3 bits (72), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 284 NSMRAILLGQ---EPHLLMDPDVYSMQDLLDVKSGALYLKLKDL 324
+M A LL Q H + + D+YS+QDLLD+ SG L L ++
Sbjct: 321 EAMEARLLLQLQDRQHFVENDDMYSLQDLLDISSGRLGCTLTEI 364
>sp|Q7T0P6|DFI8B_XENLA Differentially expressed in FDCP 8 homolog B OS=Xenopus laevis
GN=def8-b PE=2 SV=1
Length = 443
Score = 34.7 bits (78), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
Query: 338 LGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHV-YNCEPTNA 387
L H + + D+YS+QDLLD+ SG L L ++ + + H+ +CE A
Sbjct: 331 LQDRQHFVENDDMYSLQDLLDISSGRLGCSLTEIHTTFAKHIKLDCERCQA 381
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3
SV=1
Length = 1009
Score = 34.3 bits (77), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 38/163 (23%), Positives = 63/163 (38%), Gaps = 26/163 (15%)
Query: 63 IPFHHEPITETIVHSELR---------NLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYL 113
I FH I ET +SE R +I V+++ G +EG CV V G Y
Sbjct: 88 ITFHIYDIVET-TYSEDRCNDIPFKFQTDIIPNGTVLKLLGRTLEGASVCVNVFGQRNYF 146
Query: 114 YIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFL 173
Y+ +++Q AL K S + KK + Y +E
Sbjct: 147 YVKVPEGGNITYLIKQ-----------ALNEKFSPSCAYQTEAVKKKILSRYDPEEHDVF 195
Query: 174 KILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCID 216
K+ + + K+ D L++ + +E+++ I +F ID
Sbjct: 196 KVTVSSSLSVYKISDSLVSNGC-----EVFETNVDAIRRFVID 233
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1
(isolate Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 34.3 bits (77), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 38/206 (18%), Positives = 79/206 (38%), Gaps = 41/206 (19%)
Query: 51 CVFVHGVFPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVF 110
CVF Y Y+P+ + + + +I + G +G CV VHG
Sbjct: 127 CVFCAHDVSYEYLPWRY------------KRFLSPTGTIISLIGKTEDGTDVCVNVHGQA 174
Query: 111 PYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADER 170
Y Y+ E T + ++ ++++ K+S + + K + G++ +
Sbjct: 175 YYFYVAMKDEAATRDAVSKVMSNLE---------KESSSCSYVMKSVNKMSLMGFNTNTS 225
Query: 171 TFLKILLYEPYHMSK-----LEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNI 225
++L ++++ + + K L+DL F+ +E + +F +D
Sbjct: 226 SYL-MMIFSNHFVGKEAARNLKDL---------DFEIFEHLVEPNTRFLVDNEF-----C 270
Query: 226 EFNMVKFRSDSETSLPKLSHCQLEAD 251
F ++ K S+C+LE D
Sbjct: 271 SFGWYSLKTPYVRQTSKDSNCELELD 296
>sp|Q9H714|K226L_HUMAN Uncharacterized protein KIAA0226-like OS=Homo sapiens GN=KIAA0226L
PE=1 SV=3
Length = 662
Score = 33.9 bits (76), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Query: 321 LKDLVSACSIFRMRAILLGQEP-HLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHV 379
+K L+ C Q P HL + ++S++DL+ +K G L LKD++ A +HV
Sbjct: 532 IKKLLKTCRFANSALKEFEQVPGHLTDELHLFSLEDLVRIKKGLLAPLLKDILKASLAHV 591
Query: 380 YNCE 383
CE
Sbjct: 592 AGCE 595
>sp|Q80U62|RUBIC_MOUSE Run domain Beclin-1 interacting and cystein-rich containing protein
OS=Mus musculus GN=Kiaa0226 PE=1 SV=2
Length = 956
Score = 33.1 bits (74), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 343 HLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNC 382
HL D +YS+ DL K G L +L +L A ++HV C
Sbjct: 826 HLTEDLHLYSLSDLTATKKGELGPRLAELTRAGAAHVERC 865
>sp|Q3TD16|K226L_MOUSE Uncharacterized protein KIAA0226-like OS=Mus musculus GN=Kiaa0226l
PE=2 SV=2
Length = 648
Score = 32.7 bits (73), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 343 HLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNCE 383
HL + ++SM D L K G L LKD++ A +HV +CE
Sbjct: 541 HLTDECHIFSMDDFLRTKKGLLAPLLKDILRASLAHVDSCE 581
>sp|A7E316|K226L_BOVIN Uncharacterized protein KIAA0226-like OS=Bos taurus GN=KIAA0226L
PE=2 SV=1
Length = 663
Score = 32.7 bits (73), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 321 LKDLVSACSIFRMRAILLGQEP-HLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHV 379
+K L+ C Q P HL ++S++D++ VK G L LKD++ A HV
Sbjct: 533 IKKLLKTCRFAESTLKEFEQLPGHLTEALHLFSLEDMVKVKKGLLAPLLKDILKASLEHV 592
Query: 380 YNCE 383
+CE
Sbjct: 593 ASCE 596
>sp|Q9VTT9|DEFI8_DROME Differentially expressed in FDCP 8 homolog OS=Drosophila
melanogaster GN=CG11534 PE=1 SV=1
Length = 492
Score = 32.3 bits (72), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 338 LGQEPHLLMDPDVYSMQDLLDVKSGALYLKLKDLVSACSSHVYNC 382
LG HL + YS+ DL V+SGAL L+ + A + H+ +C
Sbjct: 361 LGVRRHLAQSNEFYSLSDLSQVESGALSEFLQGVFKAFNDHIRSC 405
>sp|Q9YUS2|DPOL_TUHV2 DNA polymerase OS=Tupaiid herpesvirus (strain 2) GN=DPOL PE=3 SV=1
Length = 1171
Score = 32.3 bits (72), Expect = 6.1, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 78/191 (40%), Gaps = 26/191 (13%)
Query: 71 TETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQL 130
++ ++H R+ + V+R+FG +G CV V G Y Y + L +L
Sbjct: 126 SKELIHPGYRHRITPCGVVLRLFGRTADGASLCVNVFGQDAYFYCRYGDAQSLHDRLYRL 185
Query: 131 AASIDKALNIALGYKDSVQHVFHISI--CKKFPMYGYHADERTFLKILLYEPYHMSKLED 188
+ +++ A VFH+ + ++ +YGY L ++ +H+ K
Sbjct: 186 SDTLELA------------PVFHVRVRRVQRCSIYGYGTRPFADLYLVACGNWHVLK--- 230
Query: 189 LLLNGAVFNERFQPYESHIPYILQFCIDYNL--YGMSNIEFNMVKFRSDSETSLPKLSHC 246
+ + +E + +E + + +F +D + +G + R + + +LS
Sbjct: 231 -KMGQCLLDEGVEVFEVGVSPLTRFLLDKKIPSFGWCRLR------RWHARPAHGRLSTA 283
Query: 247 QLEADVKAESI 257
+LE D + +
Sbjct: 284 ELEVDCEVADV 294
>sp|Q9YUS3|DPOL_TUHV1 DNA polymerase OS=Tupaiid herpesvirus 1 (strain 1) GN=DPOL PE=3
SV=1
Length = 1171
Score = 32.3 bits (72), Expect = 6.1, Method: Composition-based stats.
Identities = 36/191 (18%), Positives = 78/191 (40%), Gaps = 26/191 (13%)
Query: 71 TETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQL 130
++ ++H R+ + V+R+FG +G CV V G Y Y + L +L
Sbjct: 126 SKELIHPGYRHRITPCGVVLRLFGRTADGASLCVNVFGQDAYFYCRYGDAQSLHDRLYRL 185
Query: 131 AASIDKALNIALGYKDSVQHVFHISI--CKKFPMYGYHADERTFLKILLYEPYHMSKLED 188
+ +++ A VFH+ + ++ +YGY L ++ +H+ K
Sbjct: 186 SDTLELA------------PVFHVRVRRVQRCSIYGYGTRPFADLYLVACGNWHVLK--- 230
Query: 189 LLLNGAVFNERFQPYESHIPYILQFCIDYNL--YGMSNIEFNMVKFRSDSETSLPKLSHC 246
+ + +E + +E + + +F +D + +G + R + + +LS
Sbjct: 231 -KMGQCLLDEGVEVFEVGVSPLTRFLLDKKIPSFGWCRLR------RWHARPAHGRLSTA 283
Query: 247 QLEADVKAESI 257
+LE D + +
Sbjct: 284 ELEVDCEVADV 294
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.325 0.140 0.418
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 140,776,863
Number of Sequences: 539616
Number of extensions: 5800788
Number of successful extensions: 17902
Number of sequences better than 100.0: 45
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 17807
Number of HSP's gapped (non-prelim): 82
length of query: 387
length of database: 191,569,459
effective HSP length: 119
effective length of query: 268
effective length of database: 127,355,155
effective search space: 34131181540
effective search space used: 34131181540
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 62 (28.5 bits)