Query psy5919
Match_columns 387
No_of_seqs 329 out of 861
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 21:48:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5919.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5919hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iay_A DNA polymerase delta ca 100.0 5.3E-29 1.8E-33 273.1 19.0 161 85-258 66-235 (919)
2 2gv9_A DNA polymerase; polymer 99.9 1E-23 3.5E-28 235.9 13.9 178 72-258 122-309 (1193)
3 1s5j_A DNA polymerase I; repli 99.8 3E-19 1E-23 195.0 7.0 122 85-234 27-148 (847)
4 3k59_A POL II, DNA polymerase 99.6 3.4E-16 1.2E-20 169.2 9.1 116 83-228 17-132 (786)
5 1qht_A Protein (DNA polymerase 99.6 4.9E-15 1.7E-19 160.5 9.5 122 85-225 11-132 (775)
6 1noy_A Protein (DNA polymerase 98.5 3.1E-08 1.1E-12 99.1 1.5 91 84-225 9-99 (388)
7 2gv9_A DNA polymerase; polymer 97.6 1.8E-05 6.1E-10 89.1 3.3 36 32-67 134-169 (1193)
8 1s5j_A DNA polymerase I; repli 97.4 5.6E-05 1.9E-09 82.6 2.4 33 36-68 30-62 (847)
9 1qht_A Protein (DNA polymerase 97.2 0.00019 6.4E-09 77.8 4.4 34 36-70 14-47 (775)
10 3iay_A DNA polymerase delta ca 96.6 0.00082 2.8E-08 74.0 3.2 55 2-68 47-101 (919)
11 3k59_A POL II, DNA polymerase 95.4 0.0045 1.5E-07 67.0 1.9 33 35-68 21-53 (786)
12 1noy_A Protein (DNA polymerase 93.5 0.039 1.3E-06 54.7 3.3 31 36-67 13-43 (388)
13 1k5n_B Beta-2-microglobulin, l 43.4 19 0.00066 27.7 3.5 26 35-60 5-34 (100)
14 1lk2_B Beta-2-microglobulin; c 40.9 20 0.0007 27.5 3.3 25 35-59 4-32 (99)
15 3gbl_A BETA2-microglobulin; im 34.8 32 0.0011 26.3 3.5 26 35-60 4-33 (97)
16 1bii_B Beta-2 microglobulin, M 33.9 29 0.00099 27.8 3.2 26 34-59 23-52 (119)
17 3p73_B Beta-2-microglobulin; I 32.6 36 0.0012 26.1 3.5 25 36-60 5-33 (99)
18 3c5j_A HLA class II histocompa 31.2 37 0.0013 29.1 3.7 27 34-60 85-115 (181)
19 1pfc_A IGG1 PFC' FC; immunoglo 30.9 20 0.00067 28.4 1.7 27 34-60 13-44 (113)
20 3bev_A Major histocompatibilit 30.6 34 0.0012 31.4 3.6 26 34-59 180-206 (274)
21 3lqz_A HLA class II histocompa 30.5 36 0.0012 29.3 3.5 26 34-59 85-114 (181)
22 3jts_B Beta-2-microglobulin; a 30.5 39 0.0013 27.0 3.5 27 34-60 23-53 (119)
23 1uvq_A HLA class II histocompa 29.2 41 0.0014 29.3 3.7 28 33-60 87-118 (197)
24 3usa_D HLA class II histocompa 28.2 42 0.0014 29.4 3.5 29 35-63 93-126 (189)
25 3c5j_B MHC class II antigen; H 27.6 43 0.0015 28.6 3.5 27 34-60 95-125 (190)
26 3d2u_A UL18 protein; MHC class 26.5 1.6E+02 0.0055 27.0 7.5 26 34-59 189-216 (281)
27 1zs8_A Histocompatibility 2, M 26.0 41 0.0014 30.9 3.2 26 34-59 182-209 (274)
28 3o81_A Beta-2-microglobulin; I 25.9 53 0.0018 26.3 3.5 29 32-60 21-53 (119)
29 1a6z_A HFE; HFE, hereditary he 25.2 40 0.0014 31.0 3.0 27 34-60 184-211 (275)
30 2ouw_A Alkylhydroperoxidase AH 24.1 21 0.00072 29.1 0.7 27 360-386 62-88 (138)
31 1iak_A MHC class II I-AK; hist 24.0 55 0.0019 28.5 3.5 27 34-60 89-119 (199)
32 1r3h_A MHC H2-TL-T10-129; clas 23.9 53 0.0018 29.8 3.5 26 34-59 167-194 (260)
33 2bc4_B HLA class II histocompa 23.8 58 0.002 28.3 3.7 27 33-59 94-124 (211)
34 1u58_A MHC-I homolog M144; MCM 23.7 45 0.0015 30.4 3.0 26 34-59 144-172 (253)
35 1onq_A T-cell surface glycopro 23.6 50 0.0017 30.5 3.3 26 34-59 185-213 (283)
36 4aen_A HLA class II histocompa 23.5 56 0.0019 28.9 3.5 27 33-59 99-129 (207)
37 2h26_A CD1B antigen, T-cell su 22.7 54 0.0018 30.3 3.3 26 34-59 185-213 (286)
38 2yf1_A Major histocompatibilit 22.4 51 0.0018 31.3 3.2 27 34-60 201-228 (329)
39 2p24_A H-2 class II histocompa 22.1 61 0.0021 29.0 3.5 27 34-60 119-149 (236)
40 2oyo_A Uncharacterized peroxid 21.4 30 0.001 29.9 1.2 33 354-386 63-95 (196)
41 1t7v_A Zinc-alpha-2-glycoprote 21.0 59 0.002 29.8 3.2 26 34-59 185-212 (278)
42 1uvq_B HLA class II histocompa 20.4 64 0.0022 27.7 3.2 27 34-60 93-123 (198)
43 2gmy_A Hypothetical protein AT 20.3 22 0.00076 29.6 0.1 27 360-386 26-52 (153)
44 1mhc_A MHC class I antigen H2- 20.2 63 0.0022 29.7 3.2 26 35-60 184-211 (282)
45 2prr_A Alkylhydroperoxidase AH 20.2 37 0.0013 29.4 1.5 28 359-386 64-91 (197)
No 1
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=5.3e-29 Score=273.14 Aligned_cols=161 Identities=25% Similarity=0.470 Sum_probs=131.7
Q ss_pred CCccEEEEEEecCCCCEEEEEEceeeeEEEEecCCC---CchHHHHHHHHHHHHHHHHHHcCCCCCcceEEEEEEEEeec
Q psy5919 85 QKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE---PITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFP 161 (387)
Q Consensus 85 ~~~pvIrlFG~T~~G~svcv~Vhgf~PYfYv~~~~~---~~~~~~l~~l~~~l~~~l~~s~~~~~~~~~V~~ie~V~~~~ 161 (387)
..+|+||+||+|++|+|||||||||.|||||++|++ +..+ .+.++...|++ .+ ...+.+|++|+|++
T Consensus 66 ~~~~virlfg~t~~G~sv~v~V~gf~PYFYv~~~~~~~~~~~~-~~~~~~~~L~~----~~-----~~~v~~ve~v~K~~ 135 (919)
T 3iay_A 66 NTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNSSDANDQE-QINKFVHYLNE----TF-----DHAIDSIEVVSKQS 135 (919)
T ss_dssp TBCEEEEEEEEETTSCEEEEEEESCCCEEEEECCSSGGGGCHH-HHHHHHHHHHT----TT-----TTCEEEEEEEEEEE
T ss_pred CCeeEEEEEEEeCCCCEEEEEECCcCCEEEEEcCCcccccchh-HHHHHHHHHHH----hh-----cCCceEEEEEeeec
Confidence 356788888888889999999999999999988876 4332 45555554433 22 35699999999999
Q ss_pred eecccC-CceEEEEEEecCcchHHHHHHHHhCCcc-cC----CccceeccCcchhhhhhhhcCCcceeeEEecceeEEec
Q psy5919 162 MYGYHA-DERTFLKILLYEPYHMSKLEDLLLNGAV-FN----ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSD 235 (387)
Q Consensus 162 ~YGY~~-~~~~FlKI~~~~P~~v~~l~~lL~~g~~-~~----~~~q~yEahIp~~lrFmiD~nL~G~~wi~~~~~~~r~~ 235 (387)
+|||++ .+.+|+||++.+|..++++++.|++|.+ ++ ..+++|| ||||.+|||+|+||.||+|++++++.|+..
T Consensus 136 l~gy~~~~~~~~lKI~~~~p~~v~~~r~~l~~g~~~~~~~~~~~~~~yE-dI~~~~RfliD~~I~g~~W~~i~~~~~~~~ 214 (919)
T 3iay_A 136 IWGYSGDTKLPFWKIYVTYPHMVNKLRTAFERGHLSFNSWFSNGTTTYD-NIAYTLRLMVDCGIVGMSWITLPKGKYSMI 214 (919)
T ss_dssp SSCCSCSCCEEEEEEEESSTTHHHHHHHHHHHSCCCGGGSSTTCCCCBC-CCCHHHHHHHHHTCCTTCEEEECTTSEEEC
T ss_pred cccCCCCCceEEEEEEEcCHHHHHHHHHHHHccccccccccccCccccc-CCChHhhheeecCCccceEEEEecCcceec
Confidence 999995 5789999999999999999999998733 22 3479999 999999999999999999999998888765
Q ss_pred CCCCCCCCCccceeeEeecccce
Q psy5919 236 SETSLPKLSHCQLEADVKAESIV 258 (387)
Q Consensus 236 ~~~~~~r~S~C~lEiDv~~~~Il 258 (387)
... .+.|+|++|++|.+.+++
T Consensus 215 ~~~--~~~S~c~~Ev~v~~~~l~ 235 (919)
T 3iay_A 215 EPN--NRVSSCQLEVSINYRNLI 235 (919)
T ss_dssp CGG--GCCBCCSEEEEEETTTCE
T ss_pred ccc--CCccceeEEEEeeccccc
Confidence 332 478999999999988887
No 2
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=99.90 E-value=1e-23 Score=235.89 Aligned_cols=178 Identities=16% Similarity=0.233 Sum_probs=140.9
Q ss_pred cccccccccccccCCccEEEEEEecCCCCEEEEEEceeeeEEEEecCCC---CchHHHHHHHHHHHHHHHHHHcCC--CC
Q psy5919 72 ETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE---PITETMLQQLAASIDKALNIALGY--KD 146 (387)
Q Consensus 72 ~~~v~s~lr~~~~~~~pvIrlFG~T~~G~svcv~Vhgf~PYfYv~~~~~---~~~~~~l~~l~~~l~~~l~~s~~~--~~ 146 (387)
...+...++...++.+|+||+||+|++|++|||+||||.|||||+.++. +..+ ...++...|++++....+. ..
T Consensus 122 ~~~~~~~f~~~i~p~g~vi~l~g~t~~G~sv~v~v~~f~pYFYv~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~ 200 (1193)
T 2gv9_A 122 AAQFHARFMDAITPTGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEEVDRHLQCR-APRDLCERMAAALRESPGASFRG 200 (1193)
T ss_dssp TSCCCHHHHHHTSSCEEEEEEEEECSSCCEEEEEEECCCEEEEEEHHHHHHTTCCC-SHHHHHHHHHHHHHHSSSCCTTC
T ss_pred cccCCHHHhhccCCCCCEEEEEEEcCCCCEEEEEECCCCeEEEEECCCcccccccc-cHHHHHHHHHHHHHhhccccccc
Confidence 3446667788888999999999999999999999999999999998753 1111 2345666666666543221 11
Q ss_pred CcceEEEEEEEEeeceecccCCceEEEEEEecCcchHHHHHHHHhCCcccCCccceeccCcchhhhhhhhc-CCcceeeE
Q psy5919 147 SVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDY-NLYGMSNI 225 (387)
Q Consensus 147 ~~~~V~~ie~V~~~~~YGY~~~~~~FlKI~~~~P~~v~~l~~lL~~g~~~~~~~q~yEahIp~~lrFmiD~-nL~G~~wi 225 (387)
....+.++++|+|+++|||++.+..|+||++.+|..++++++.+.. .+++||++|+|..|||+|. ||.||+|+
T Consensus 201 ~~~~~~~ve~V~k~~l~~~~~~~~~~~ki~~~~p~~v~~lr~~~~~------~~~~~E~dI~~~~RfliD~~~i~~~~W~ 274 (1193)
T 2gv9_A 201 ISADHFEAEVVERTDVYYYETRPALFYRVYVRSGRVLSYLCDNFCP------AIKKYEGGVDATTRFILDNPGFVTFGWY 274 (1193)
T ss_dssp CCGGGCEEEEEEEEESSCSSCCCEEEEEEEESCHHHHHHHHHHTCS------SSCEESTTCCHHHHHHHHSTTCCSSEEE
T ss_pred cccCcceEEEEEEeeccccCCCcceEEEEeccCHHHHHHHHhhccC------CceEEeccCchhheEeEEcCCCCCcceE
Confidence 2457889999999999999988899999999999999999997543 4789999999999999999 99999999
Q ss_pred Eecce----eEEecCCCCCCCCCccceeeEeecccce
Q psy5919 226 EFNMV----KFRSDSETSLPKLSHCQLEADVKAESIV 258 (387)
Q Consensus 226 ~~~~~----~~r~~~~~~~~r~S~C~lEiDv~~~~Il 258 (387)
+++.. .++.+... .+.|+|++|++|.+.++.
T Consensus 275 ~i~~~~~g~~~~~r~~~--~~~s~c~~E~~~~~~~~~ 309 (1193)
T 2gv9_A 275 RLKPGRNNTLAQPRAPM--AFGTSSDVEFNCTADNLA 309 (1193)
T ss_dssp EECCBTTTBCCEECCGG--GCSBSCSEEEEEEGGGEE
T ss_pred EEecccccceeeecccc--ccCCCCceEEEEEcccce
Confidence 99874 23332211 367999999999877765
No 3
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=99.76 E-value=3e-19 Score=194.96 Aligned_cols=122 Identities=18% Similarity=0.267 Sum_probs=102.3
Q ss_pred CCccEEEEEEecCCCCEEEEEEceeeeEEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcceEEEEEEEEeeceec
Q psy5919 85 QKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYG 164 (387)
Q Consensus 85 ~~~pvIrlFG~T~~G~svcv~Vhgf~PYfYv~~~~~~~~~~~l~~l~~~l~~~l~~s~~~~~~~~~V~~ie~V~~~~~YG 164 (387)
.+.|+||+||.|++|.++|++||||.||||+..|.. .+.++.. . ++. ..+.+||.|+|.++||
T Consensus 27 ~~~~vi~l~~~~~~~~~~~~~v~gf~pYfyv~~~~~-----~~~~~~~----~----~~~----~~~~~ve~v~k~~~~~ 89 (847)
T 1s5j_A 27 KGKAVCKLFDKETQKIYALYDNTGHKPYFLVDLEPD-----KVGKIPK----I----VRD----PSFDHIETVSKIDPYT 89 (847)
T ss_dssp TTEEEEEEEETTTTEEEEEECCSCCCCEEEESSCHH-----HHTTCHH----H----HTC----TTEEEEEEEEEECTTT
T ss_pred CCCeEEEEEEeeCCccEEEEEcCCCceEEEEECCcH-----HHHHHHH----H----hcc----CCceEEEEEEeEeccC
Confidence 345999999999999999999999999999998763 1212211 1 122 2389999999999876
Q ss_pred ccCCceEEEEEEecCcchHHHHHHHHhCCcccCCccceeccCcchhhhhhhhcCCcceeeEEecceeEEe
Q psy5919 165 YHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRS 234 (387)
Q Consensus 165 Y~~~~~~FlKI~~~~P~~v~~l~~lL~~g~~~~~~~q~yEahIp~~lrFmiD~nL~G~~wi~~~~~~~r~ 234 (387)
+.+.+|+||++.+|..++++|+.|+ ++|||+|+|..|||+|.+|.||+|++++...++.
T Consensus 90 --~~~~~~~ki~~~~p~~v~~~r~~l~---------~~~EadI~~~~RfliD~~i~~~~w~~~~~~~~~~ 148 (847)
T 1s5j_A 90 --WNKFKLTKIVVRDPLAVRRLRNDVP---------KAYEAHIKYFNNYMYDIGLIPGMPYVVKNGKLES 148 (847)
T ss_dssp --CCEEEEEEEEESSHHHHHHHTTSSS---------CEESCSSCHHHHHHHHHTCCTTSEEEEETTEEEE
T ss_pred --CCceeEEEEEEeCHHHHHHHHHHhh---------hheecCCchHhhhheecCccceEEEEEecccccc
Confidence 6788999999999999999988754 7999999999999999999999999999877754
No 4
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=99.63 E-value=3.4e-16 Score=169.16 Aligned_cols=116 Identities=12% Similarity=0.141 Sum_probs=92.3
Q ss_pred ccCCccEEEEEEecCCCCEEEEEEceeeeEEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcceEEEEEEEEeece
Q psy5919 83 VIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPM 162 (387)
Q Consensus 83 ~~~~~pvIrlFG~T~~G~svcv~Vhgf~PYfYv~~~~~~~~~~~l~~l~~~l~~~l~~s~~~~~~~~~V~~ie~V~~~~~ 162 (387)
.++++|+|++||+|++|. +||.|+||.||||++.++... +.+. +.. .....+ +..++
T Consensus 17 ~~~~g~~i~~~g~t~~G~-~~v~v~~~~~yfy~~~~~~~~-----------~~~~----~~~----~~~~~~---~~~~l 73 (786)
T 3k59_A 17 DTPQGTEVSFWLATDNGP-LQVTLAPQESVAFIPADQVPR-----------AQHI----LQG----EQGFRL---TPLAL 73 (786)
T ss_dssp EETTEEEEEEEEEETTEE-EEEECSCCCEEEEEEGGGHHH-----------HHHH----TTT----CCSEEE---EEEEE
T ss_pred EeCCceEEEEEEEcCCCC-EEEEEcCCceEEEEECCcHHH-----------HHHH----Hhc----CCceEE---EEeee
Confidence 357889999999999997 999999999999998776211 1111 111 112333 33567
Q ss_pred ecccCCceEEEEEEecCcchHHHHHHHHhCCcccCCccceeccCcchhhhhhhhcCCcceeeEEec
Q psy5919 163 YGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFN 228 (387)
Q Consensus 163 YGY~~~~~~FlKI~~~~P~~v~~l~~lL~~g~~~~~~~q~yEahIp~~lrFmiD~nL~G~~wi~~~ 228 (387)
++|++. +++||++.+|..++++++.|++. .+++|||+|+|.+|||+|++|.||+|++.+
T Consensus 74 ~~~~~~--~~~~i~~~~~~~~~~~r~~l~~~-----g~~v~EadI~~~~RfliD~~i~~~~w~~~~ 132 (786)
T 3k59_A 74 KDFHRQ--PVYGLYCRAHRQLMNYEKRLREG-----GVTVYEADVRPPERYLMERFITSPVWVEGD 132 (786)
T ss_dssp ECTTCC--EEEEEEESSHHHHHHHHHHHHHT-----TCCCBSTTCCHHHHHHHHTTCSSEEEEEEE
T ss_pred eeecCc--eEEEEEECCHHHHHHHHHHHHHc-----CCceeeccCChhheeeEecCcccceEEEEe
Confidence 777644 78999999999999999999873 479999999999999999999999999865
No 5
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=99.56 E-value=4.9e-15 Score=160.53 Aligned_cols=122 Identities=20% Similarity=0.295 Sum_probs=93.6
Q ss_pred CCccEEEEEEecCCCCEEEEEEceeeeEEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcceEEEEEEEEeeceec
Q psy5919 85 QKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYG 164 (387)
Q Consensus 85 ~~~pvIrlFG~T~~G~svcv~Vhgf~PYfYv~~~~~~~~~~~l~~l~~~l~~~l~~s~~~~~~~~~V~~ie~V~~~~~YG 164 (387)
.+.|+|++||.+ +|+++|+++|||.||||+.++++...+ .+.++ ...+.. .....+.+++ |+++ ++|
T Consensus 11 ~~~~~i~~~~~~-~g~~~~~~~~~f~PYfyv~~~~~~~~~-~~~~~--------~~~~~~-~~~~~~~~~~-v~k~-~~g 77 (775)
T 1qht_A 11 NGKPVIRVFKKE-NGEFKIEYDRTFEPYFYALLKDDSAIE-DVKKV--------TAKRHG-TVVKVKRAEK-VQKK-FLG 77 (775)
T ss_dssp TTEEEEEEEEEE-TTEEEEEEECCCCCEEEEEESCGGGHH-HHTTC--------EEEETT-EEEECCEEEE-EEEE-ETT
T ss_pred CCCEEEEEEEee-CCEEEEEEECCCceEEEEECCCCccHH-HHHHH--------HHHhcC-CCcceEEEEE-EEee-ecC
Confidence 356999999988 599999999999999999998753322 11100 000111 1123566777 7776 665
Q ss_pred ccCCceEEEEEEecCcchHHHHHHHHhCCcccCCccceeccCcchhhhhhhhcCCcceeeE
Q psy5919 165 YHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNI 225 (387)
Q Consensus 165 Y~~~~~~FlKI~~~~P~~v~~l~~lL~~g~~~~~~~q~yEahIp~~lrFmiD~nL~G~~wi 225 (387)
.+++|+||++.+|..++++++.+++. +...++||++|||..|||+|.+|.+|.|.
T Consensus 78 ---~~~~~~ki~~~~~~~~~~~r~~l~~~---~~~~~~~E~dI~~~~r~lid~~i~~~~~~ 132 (775)
T 1qht_A 78 ---RPIEVWKLYFNHPQDVPAIRDRIRAH---PAVVDIYEYDIPFAKRYLIDKGLIPMEGD 132 (775)
T ss_dssp ---EEEEEEEEECSCTTHHHHHHHHHHTS---TTEEEEESCSSCHHHHHHHHTTCCTTCSC
T ss_pred ---CCceEEEEEEcCHHHHHHHHHHHHhC---CCceeeEeccCChHheeeEEcCccccCCC
Confidence 57899999999999999999999873 33479999999999999999999999994
No 6
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=98.46 E-value=3.1e-08 Score=99.07 Aligned_cols=91 Identities=13% Similarity=0.044 Sum_probs=72.9
Q ss_pred cCCccEEEEEEecCCCCEEEEEEceeeeEEEEecCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcceEEEEEEEEeecee
Q psy5919 84 IQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMY 163 (387)
Q Consensus 84 ~~~~pvIrlFG~T~~G~svcv~Vhgf~PYfYv~~~~~~~~~~~l~~l~~~l~~~l~~s~~~~~~~~~V~~ie~V~~~~~Y 163 (387)
.+.+++|++||+|++|. +|+.+.||.||||++.++. ++.++|+
T Consensus 9 ~~~g~~~~~~g~~~~G~-~~v~~~~f~pyfy~~~~~~------------------------------------~~~~~~~ 51 (388)
T 1noy_A 9 ETVGNNIVERYIDENGK-ERTREVEYLPTMFRHCKEE------------------------------------SKYKDIY 51 (388)
T ss_dssp EEETTEEEEEEECTTSC-EEEEEEECCCSEECGGGGT------------------------------------CSSCTTT
T ss_pred EEeCCEEEEEEEcCCCC-EEEEEECCcEEEEEEcCCC------------------------------------cceEEeC
Confidence 45678999999999999 9999999999999975541 0124666
Q ss_pred cccCCceEEEEEEecCcchHHHHHHHHhCCcccCCccceeccCcchhhhhhhhcCCcceeeE
Q psy5919 164 GYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNI 225 (387)
Q Consensus 164 GY~~~~~~FlKI~~~~P~~v~~l~~lL~~g~~~~~~~q~yEahIp~~lrFmiD~nL~G~~wi 225 (387)
| ++..+|++.+|..++++++.++. ..+++||++ +|+.||++|. .. ||+
T Consensus 52 g-----~~~~~i~~~~~~~~~~~~~~l~~-----~~~~v~e~~-rf~~~~~~d~-~~--g~~ 99 (388)
T 1noy_A 52 G-----KNCAPQKFPSMKDARDWMKRMED-----IGLEALGMN-DFKLAYISDT-YG--SEI 99 (388)
T ss_dssp T-----CCCCCEECSSHHHHHHHHHHHHH-----HCTTCTHHH-HHHHHHHHHH-TC--SCC
T ss_pred C-----CEEEEEeCCCHHHHHHHHHHHHh-----cCceeccCc-HHHHHHhhhc-CC--cce
Confidence 5 35667999999999999998876 257899999 9999999997 44 453
No 7
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=97.64 E-value=1.8e-05 Score=89.12 Aligned_cols=36 Identities=28% Similarity=0.436 Sum_probs=32.4
Q ss_pred cccCcEEEeeecCCCCceeEEEEeeccceeeeeCCC
Q psy5919 32 IQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHH 67 (387)
Q Consensus 32 ~~~vpvir~fG~t~~g~~~c~hvhg~~py~~~~~~~ 67 (387)
.+.=||||+||.|.+|++|||||||+.|||||.++.
T Consensus 134 ~p~g~vi~l~g~t~~G~sv~v~v~~f~pYFYv~~~~ 169 (1193)
T 2gv9_A 134 TPTGTVITLLGLTPEGHRVAVHVYGTRQYFYMNKEE 169 (1193)
T ss_dssp SSCEEEEEEEEECSSCCEEEEEEECCCEEEEEEHHH
T ss_pred CCCCCEEEEEEEcCCCCEEEEEECCCCeEEEEECCC
Confidence 344589999999999999999999999999999863
No 8
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=97.36 E-value=5.6e-05 Score=82.60 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=31.3
Q ss_pred cEEEeeecCCCCceeEEEEeeccceeeeeCCCC
Q psy5919 36 PVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHE 68 (387)
Q Consensus 36 pvir~fG~t~~g~~~c~hvhg~~py~~~~~~~~ 68 (387)
||||+||.|..|+++|+|||||-|||||.++.+
T Consensus 30 ~vi~l~~~~~~~~~~~~~v~gf~pYfyv~~~~~ 62 (847)
T 1s5j_A 30 AVCKLFDKETQKIYALYDNTGHKPYFLVDLEPD 62 (847)
T ss_dssp EEEEEEETTTTEEEEEECCSCCCCEEEESSCHH
T ss_pred eEEEEEEeeCCccEEEEEcCCCceEEEEECCcH
Confidence 999999999999999999999999999998754
No 9
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=97.21 E-value=0.00019 Score=77.76 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=31.1
Q ss_pred cEEEeeecCCCCceeEEEEeeccceeeeeCCCCCC
Q psy5919 36 PVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHEPI 70 (387)
Q Consensus 36 pvir~fG~t~~g~~~c~hvhg~~py~~~~~~~~~~ 70 (387)
||||+||.+ +|+++|+|+|||-||||+.++.++.
T Consensus 14 ~~i~~~~~~-~g~~~~~~~~~f~PYfyv~~~~~~~ 47 (775)
T 1qht_A 14 PVIRVFKKE-NGEFKIEYDRTFEPYFYALLKDDSA 47 (775)
T ss_dssp EEEEEEEEE-TTEEEEEEECCCCCEEEEEESCGGG
T ss_pred EEEEEEEee-CCEEEEEEECCCceEEEEECCCCcc
Confidence 999999987 5999999999999999999987653
No 10
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=96.61 E-value=0.00082 Score=73.97 Aligned_cols=55 Identities=24% Similarity=0.350 Sum_probs=47.5
Q ss_pred cEEEEeeeeeecCCCCCCCCCccccccccccccCcEEEeeecCCCCceeEEEEeeccceeeeeCCCC
Q psy5919 2 FSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHE 68 (387)
Q Consensus 2 ~~~~~~~~d~y~~~p~~~ld~~~~~~~~~~~~~vpvir~fG~t~~g~~~c~hvhg~~py~~~~~~~~ 68 (387)
+.||++++||+.- ++ | .+.+.+||||+||.|++|++|||||||+.|||||+++.+
T Consensus 47 ~~f~~ld~~~~~~---~~-------~--~~~~~~~virlfg~t~~G~sv~v~V~gf~PYFYv~~~~~ 101 (919)
T 3iay_A 47 ISFQQIDAEQSVL---NG-------I--KDENTSTVVRFFGVTSEGHSVLCNVTGFKNYLYVPAPNS 101 (919)
T ss_dssp EEEEEEEEEEEEC---SS-------S--CBTTBCEEEEEEEEETTSCEEEEEEESCCCEEEEECCSS
T ss_pred eEEEEEecccccc---cc-------c--cccCCeeEEEEEEEeCCCCEEEEEECCcCCEEEEEcCCc
Confidence 5799999999842 23 2 345689999999999999999999999999999999887
No 11
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=95.42 E-value=0.0045 Score=66.98 Aligned_cols=33 Identities=12% Similarity=0.044 Sum_probs=30.4
Q ss_pred CcEEEeeecCCCCceeEEEEeeccceeeeeCCCC
Q psy5919 35 VPVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHHE 68 (387)
Q Consensus 35 vpvir~fG~t~~g~~~c~hvhg~~py~~~~~~~~ 68 (387)
-||||+||.|.+|. +|+.|+|+-||||++.++.
T Consensus 21 g~~i~~~g~t~~G~-~~v~v~~~~~yfy~~~~~~ 53 (786)
T 3k59_A 21 GTEVSFWLATDNGP-LQVTLAPQESVAFIPADQV 53 (786)
T ss_dssp EEEEEEEEEETTEE-EEEECSCCCEEEEEEGGGH
T ss_pred ceEEEEEEEcCCCC-EEEEEcCCceEEEEECCcH
Confidence 49999999999998 9999999999999988753
No 12
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=93.46 E-value=0.039 Score=54.71 Aligned_cols=31 Identities=13% Similarity=-0.017 Sum_probs=28.5
Q ss_pred cEEEeeecCCCCceeEEEEeeccceeeeeCCC
Q psy5919 36 PVIRVFGNNIEGKKTCVFVHGVFPYLYIPFHH 67 (387)
Q Consensus 36 pvir~fG~t~~g~~~c~hvhg~~py~~~~~~~ 67 (387)
++|++||.|.+|. +|+.+.|+-||||++.+.
T Consensus 13 ~~~~~~g~~~~G~-~~v~~~~f~pyfy~~~~~ 43 (388)
T 1noy_A 13 NNIVERYIDENGK-ERTREVEYLPTMFRHCKE 43 (388)
T ss_dssp TEEEEEEECTTSC-EEEEEEECCCSEECGGGG
T ss_pred CEEEEEEEcCCCC-EEEEEECCcEEEEEEcCC
Confidence 6778999999999 999999999999998764
No 13
>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B 1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B 1duz_B* ...
Probab=43.43 E-value=19 Score=27.72 Aligned_cols=26 Identities=27% Similarity=0.515 Sum_probs=18.6
Q ss_pred CcEEEeeec--CCCC--ceeEEEEeeccce
Q psy5919 35 VPVIRVFGN--NIEG--KKTCVFVHGVFPY 60 (387)
Q Consensus 35 vpvir~fG~--t~~g--~~~c~hvhg~~py 60 (387)
-|.+++|-. ...| ...-||+.||+|=
T Consensus 5 ~P~V~v~~~~~~~~~~~~~L~C~~~gFyP~ 34 (100)
T 1k5n_B 5 TPKIQVYSRHPAENGKSNFLNCYVSGFHPS 34 (100)
T ss_dssp CCEEEEEESSCCCTTSCEEEEEEEEEEBSS
T ss_pred CCEEEEEeCCcccCCCcEEEEEEEEeeECC
Confidence 488888732 2233 4789999999993
No 14
>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...
Probab=40.86 E-value=20 Score=27.51 Aligned_cols=25 Identities=24% Similarity=0.481 Sum_probs=18.0
Q ss_pred CcEEEeee-cC-CCC--ceeEEEEeeccc
Q psy5919 35 VPVIRVFG-NN-IEG--KKTCVFVHGVFP 59 (387)
Q Consensus 35 vpvir~fG-~t-~~g--~~~c~hvhg~~p 59 (387)
-|.+++|- .. ..| ...-||+.||+|
T Consensus 4 ~P~V~v~~~~~~~~~~~~~L~C~~~gfyP 32 (99)
T 1lk2_B 4 TPQIQVYSRHPPENGKPNILNCYVTQFHP 32 (99)
T ss_dssp CCEEEEEESSCCCTTSCEEEEEEEEEEBS
T ss_pred CCEEEEEcCCcccCCCCEEEEEEEEEEEC
Confidence 47888883 22 233 578999999998
No 15
>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I, secreted, immune system; 2.10A {Ctenopharyngodon idella} SCOP: b.1.1.0
Probab=34.83 E-value=32 Score=26.32 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=19.0
Q ss_pred CcEEEeeecCC--CC--ceeEEEEeeccce
Q psy5919 35 VPVIRVFGNNI--EG--KKTCVFVHGVFPY 60 (387)
Q Consensus 35 vpvir~fG~t~--~g--~~~c~hvhg~~py 60 (387)
-|-+++|-..+ .| ....||+.||+|=
T Consensus 4 ~P~V~v~~~~~~~~~~~~~L~C~~~gFyP~ 33 (97)
T 3gbl_A 4 SPKIQVYSHYPGEYGKENTLICYVSGFHPP 33 (97)
T ss_dssp CCEEEEEESSCCCTTCCEEEEEEEECCBSS
T ss_pred CCEEEEEcCCcccCCCcEEEEEEEcceeCC
Confidence 37888886632 25 4678999999993
No 16
>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide), major histocompatibility complex class I DD, transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP: b.1.1.2
Probab=33.91 E-value=29 Score=27.84 Aligned_cols=26 Identities=27% Similarity=0.503 Sum_probs=18.8
Q ss_pred cCcEEEeee-c-CCCC--ceeEEEEeeccc
Q psy5919 34 KVPVIRVFG-N-NIEG--KKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG-~-t~~g--~~~c~hvhg~~p 59 (387)
.-|-+++|- . ...| ...-||+.||+|
T Consensus 23 ~~P~V~v~~~~~~~~~~~~tL~C~a~gFyP 52 (119)
T 1bii_B 23 KTPQIQVYSRHPPENGKPNILNCYVTQFHP 52 (119)
T ss_dssp BCCEEEEEESSCCCSSSCEEEEEEEEEEBS
T ss_pred cCCEEEEEcCCcccCCCCEEEEEEEEeecC
Confidence 458899983 2 2234 578899999999
No 17
>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} SCOP: b.1.1.0 PDB: 3p77_B* 4g43_B 4g42_B 4e0r_B 3bev_B 3bew_B 3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*
Probab=32.64 E-value=36 Score=26.10 Aligned_cols=25 Identities=24% Similarity=0.454 Sum_probs=18.4
Q ss_pred cEEEeeecCC--CC--ceeEEEEeeccce
Q psy5919 36 PVIRVFGNNI--EG--KKTCVFVHGVFPY 60 (387)
Q Consensus 36 pvir~fG~t~--~g--~~~c~hvhg~~py 60 (387)
|-+++|-..+ .| ....||+.||+|=
T Consensus 5 P~V~v~~~~~~~~~~~~~L~C~~~gFyP~ 33 (99)
T 3p73_B 5 PKVQVYSRFPASAGTKNVLNCFAAGFHPP 33 (99)
T ss_dssp CEEEEEESSCCCTTSCEEEEEEEEEESSS
T ss_pred CEEEEEeCCcccCCCCEEEEEEEeeeECC
Confidence 7788885432 35 3678999999993
No 18
>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ...
Probab=31.15 E-value=37 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.213 Sum_probs=20.9
Q ss_pred cCcEEEeeecCCC--C--ceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNIE--G--KKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~~--g--~~~c~hvhg~~py 60 (387)
.-|-+++|...+. | ....|||.||+|=
T Consensus 85 ~~P~v~v~~~~~~~~~~~~~L~C~a~gFyP~ 115 (181)
T 3c5j_A 85 VPPEVTVLTNSPVELREPNVLICFIDKFTPP 115 (181)
T ss_dssp BCCEEEEEESSCCCTTSCEEEEEEEEEEBSS
T ss_pred cCCceecccCChhhcCCCCeEEEEEeEEECC
Confidence 4599999987532 4 4789999999993
No 19
>1pfc_A IGG1 PFC' FC; immunoglobulin; 3.12A {Cavia porcellus} SCOP: b.1.1.2
Probab=30.89 E-value=20 Score=28.43 Aligned_cols=27 Identities=11% Similarity=0.360 Sum_probs=20.2
Q ss_pred cCcEEEeeecCC-----CCceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNI-----EGKKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~-----~g~~~c~hvhg~~py 60 (387)
.-|-+.+|.... ......||+.||||-
T Consensus 13 ~~P~V~v~~~~~~~~~~~~~~L~C~v~gFyP~ 44 (113)
T 1pfc_A 13 RIPEVYLLPPPRNELSKKKVSLTCMITGFYPA 44 (113)
T ss_dssp CCCCCCBCCCCSCCCCTTSCCEEEEEESCCSS
T ss_pred cCCEEEEECCCHHHhcCCceEEEEEEeeeECC
Confidence 347778887543 246889999999996
No 20
>3bev_A Major histocompatibility complex class I glycoprotein haplotype B21; MHC class I, chicken, BF21, 11MER, peptide, bulge, water cushion, immune response, immunoglobulin domain, MHC I; 2.10A {Gallus gallus} PDB: 3bew_A
Probab=30.57 E-value=34 Score=31.41 Aligned_cols=26 Identities=27% Similarity=0.571 Sum_probs=20.3
Q ss_pred cCcEEEeeecCCC-CceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIE-GKKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~-g~~~c~hvhg~~p 59 (387)
.-|-++++..... |....|||.||+|
T Consensus 180 ~~P~v~v~~~~~~~~~~L~C~a~gFyP 206 (274)
T 3bev_A 180 ERPEVRVWGKEADGILTLSCRAHGFYP 206 (274)
T ss_dssp BCCEEEEEEESSTTCSEEEEEEEEEBS
T ss_pred CCCceEEEccCCCCccEEEEEEeeeeC
Confidence 4588888877643 3389999999998
No 21
>3lqz_A HLA class II histocompatibility antigen, DP alpha; MHC, immune, disulfide bond, glycoprotein, immune respo membrane, MHC II, transmembrane, immune system; HET: NAG NDG; 3.25A {Homo sapiens}
Probab=30.51 E-value=36 Score=29.30 Aligned_cols=26 Identities=23% Similarity=0.455 Sum_probs=21.1
Q ss_pred cCcEEEeeecCCC--C--ceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIE--G--KKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~--g--~~~c~hvhg~~p 59 (387)
.-|-+++|-..+. | .+..|||.||+|
T Consensus 85 ~~P~V~v~~~~~~~~~~~~~L~C~v~gFyP 114 (181)
T 3lqz_A 85 DPPEVTVFPKEPVELGQPNTLICHIDKFFP 114 (181)
T ss_dssp BCCEEEEEESSCCCTTCCEEEEEEEEEEBS
T ss_pred CCCeEEEEcCCccccCCCeEEEEEEeeeEC
Confidence 4589999987553 4 688999999999
No 22
>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}
Probab=30.46 E-value=39 Score=27.04 Aligned_cols=27 Identities=26% Similarity=0.549 Sum_probs=20.2
Q ss_pred cCcEEEeeecCC--CC--ceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNI--EG--KKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~--~g--~~~c~hvhg~~py 60 (387)
.-|.+++|-..+ .| ....||+.||+|=
T Consensus 23 ~~P~V~v~~~~~~~~g~~~~L~C~~~gFyP~ 53 (119)
T 3jts_B 23 RTPKIQVYSRHPAENGKSNFLNCYVSGFHPS 53 (119)
T ss_dssp BCCEEEEEESSCCCTTSCEEEEEEEEEEBSS
T ss_pred cCCEEEEEccCcccCCCcEEEEEEEeCccCC
Confidence 458999986433 34 3688999999993
No 23
>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*
Probab=29.19 E-value=41 Score=29.33 Aligned_cols=28 Identities=29% Similarity=0.570 Sum_probs=21.7
Q ss_pred ccCcEEEeeecCCC--C--ceeEEEEeeccce
Q psy5919 33 QKVPVIRVFGNNIE--G--KKTCVFVHGVFPY 60 (387)
Q Consensus 33 ~~vpvir~fG~t~~--g--~~~c~hvhg~~py 60 (387)
..-|-+++|...+. | ....|||.||+|=
T Consensus 87 ~~~P~V~v~~~~~~~~~~~~tL~C~a~gFyP~ 118 (197)
T 1uvq_A 87 NEVPEVTVFSKSPVTLGQPNTLICLVDNIFPP 118 (197)
T ss_dssp CCCCEEEEEESSCCCTTSCEEEEEEEEEECSS
T ss_pred cCCCCcccccCCccccCCccEEEEEEEeEcCC
Confidence 35699999987542 3 5889999999993
No 24
>3usa_D HLA class II histocompatibility antigen, DO beta; MHC class II fold, antigen presentation enzyme and inhibitor system; HET: NAG MAN PGE; 3.20A {Homo sapiens}
Probab=28.20 E-value=42 Score=29.44 Aligned_cols=29 Identities=21% Similarity=0.316 Sum_probs=21.1
Q ss_pred CcEEEeeecCCCC----ceeEEEEeeccc-eeee
Q psy5919 35 VPVIRVFGNNIEG----KKTCVFVHGVFP-YLYI 63 (387)
Q Consensus 35 vpvir~fG~t~~g----~~~c~hvhg~~p-y~~~ 63 (387)
-|-++++..++.+ +..-|||.||+| =+-|
T Consensus 93 ~P~v~v~~~~~~~~~~~~~L~C~a~gFyP~~I~v 126 (189)
T 3usa_D 93 QPEVTVYPERTPLLHQHNLLHCSVTGFYPGDIKI 126 (189)
T ss_dssp CCEEEEEESSCCCTTSCEEEEEEEEEEBSSCEEE
T ss_pred CCCCcccccccccCCCccceEEEEeeeECCeeEE
Confidence 4778888776542 367799999999 4444
No 25
>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B 1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B* 2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B 1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...
Probab=27.57 E-value=43 Score=28.60 Aligned_cols=27 Identities=19% Similarity=0.301 Sum_probs=20.5
Q ss_pred cCcEEEeeecCC----CCceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNI----EGKKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~----~g~~~c~hvhg~~py 60 (387)
.-|.++++.... ......|||.||+|=
T Consensus 95 ~~P~v~v~~~~~~~~~~~~~L~C~~~gFyP~ 125 (190)
T 3c5j_B 95 VHPQVTVYPAKTQPLQHHNLLVCSVSGFYPG 125 (190)
T ss_dssp BCCEEEEEEEC-----CCCEEEEEEEEEBSS
T ss_pred cCceEEEEeCCccccCCceEEEEEEeeEECC
Confidence 458999997653 235789999999993
No 26
>3d2u_A UL18 protein; MHC class I homolog, disease mutation, glycation, glycoprote immune response, immunoglobulin domain, MHC I, pyrrolidone carboxylic acid; HET: NAG MAN BMA FUC; 2.21A {Human herpesvirus 5}
Probab=26.53 E-value=1.6e+02 Score=27.03 Aligned_cols=26 Identities=23% Similarity=0.294 Sum_probs=19.8
Q ss_pred cCcEEEeeecCCCC--ceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIEG--KKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~g--~~~c~hvhg~~p 59 (387)
.-|-++++.....| ....|||.||+|
T Consensus 189 ~~P~V~v~~~~~~~~~~~L~C~a~gFyP 216 (281)
T 3d2u_A 189 THPVVKGGVRNQNDNRAEAFCTSYGFFP 216 (281)
T ss_dssp BCCEEEEEEEEEETTEEEEEEEEEEEBS
T ss_pred cCCceeEEccCCccCcceEEEEEeceEC
Confidence 45888888764433 468899999999
No 27
>1zs8_A Histocompatibility 2, M region locus 10.5; major histocompatibility complex, MHC, vomeronasal organ, VN receptors, pheromone receptors, pepti immune system; HET: NAG; 3.00A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=26.02 E-value=41 Score=30.91 Aligned_cols=26 Identities=15% Similarity=0.243 Sum_probs=20.1
Q ss_pred cCcEEEeeecCCCC--ceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIEG--KKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~g--~~~c~hvhg~~p 59 (387)
.-|-++++.....| ..+.|||.||+|
T Consensus 182 ~~P~v~v~~~~~~~~~~~L~C~~~gFyP 209 (274)
T 1zs8_A 182 DAPRTHVTHKVTPEGNVTLRCWALGFYP 209 (274)
T ss_dssp BCCEEEEEEECC----CEEEEEEEEEBS
T ss_pred cCCceEEEecCCCCCceEEEEEEeceEC
Confidence 35889998876544 578999999999
No 28
>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, MHC class I molecule from B21 chicken, immune SYST; 2.00A {Gallus gallus}
Probab=25.89 E-value=53 Score=26.25 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=21.2
Q ss_pred cccCcEEEeeecCC--CC--ceeEEEEeeccce
Q psy5919 32 IQKVPVIRVFGNNI--EG--KKTCVFVHGVFPY 60 (387)
Q Consensus 32 ~~~vpvir~fG~t~--~g--~~~c~hvhg~~py 60 (387)
...-|.+++|-..+ .| ....||+.||+|=
T Consensus 21 ~~~~P~V~v~~~~~~~~g~~~~L~C~v~gFyP~ 53 (119)
T 3o81_A 21 ADLTPKVQVYSRFPASAGTKNVLNCFAAGFHPP 53 (119)
T ss_dssp CCCSCEEEEEESSCCCTTSCEEEEEEEEEESSS
T ss_pred CccCCceEEEcCCcccCCCcEEEEEEEecccCC
Confidence 33568999986543 35 3688999999993
No 29
>1a6z_A HFE; HFE, hereditary hemochromatosis, MHC class I, MHC class I complex; 2.60A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1de4_A*
Probab=25.19 E-value=40 Score=31.01 Aligned_cols=27 Identities=11% Similarity=0.156 Sum_probs=21.5
Q ss_pred cCcEEEeeecCCCC-ceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNIEG-KKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~~g-~~~c~hvhg~~py 60 (387)
.-|-++++.....| ..+.|||.||+|=
T Consensus 184 ~~P~v~v~~~~~~~~~~L~C~~~gFyP~ 211 (275)
T 1a6z_A 184 VPPLVKVTHHVTSSVTTLRCRALNYYPQ 211 (275)
T ss_dssp BCCEEEEEEEECSSCEEEEEEEEEEBSS
T ss_pred cCCCcceecCCCCCCceeEEEEeeeECC
Confidence 45888998876654 6789999999993
No 30
>2ouw_A Alkylhydroperoxidase AHPD core; YP_425393.1, carboxymuconolactone decarboxylase family, structural genomics, joint for structural genomics; 1.95A {Rhodospirillum rubrum} SCOP: a.152.1.4
Probab=24.11 E-value=21 Score=29.05 Aligned_cols=27 Identities=19% Similarity=0.256 Sum_probs=25.2
Q ss_pred cccccHHHHHHHHHHhhccccccccCC
Q psy5919 360 KSGALYLKLKDLVSACSSHVYNCEPTN 386 (387)
Q Consensus 360 ~~G~l~~~l~~l~~~~~~Hv~~C~lC~ 386 (387)
++|.|-+.+++|+......+.+|+-|.
T Consensus 62 ~~~~L~~~~~Eli~l~vs~~n~C~yC~ 88 (138)
T 2ouw_A 62 GEGALDPLTREMIYLAVSTANSCSYCA 88 (138)
T ss_dssp SSSSSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 678999999999999999999999984
No 31
>1iak_A MHC class II I-AK; histocompatibility antigen, peptide complex, histocompa antigen I-AK; HET: NAG; 1.90A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1d9k_C* 1k2d_A* 1jl4_A 2pxy_C 1u3h_C 2z31_C 1muj_A* 1lnu_A* 3c5z_C 3c60_C 3c6l_C 3rdt_C 2iad_A 1iao_A 1es0_A 3cup_A* 3mbe_A* 1f3j_A*
Probab=23.95 E-value=55 Score=28.54 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=21.4
Q ss_pred cCcEEEeeecCCC--C--ceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNIE--G--KKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~~--g--~~~c~hvhg~~py 60 (387)
.-|-+++|...+. | ....|||.||+|=
T Consensus 89 ~~P~V~v~~~~~~~~~~~~tL~C~a~gFyP~ 119 (199)
T 1iak_A 89 EAPQATVFPKSPVLLGQPNTLICFVDNIFPP 119 (199)
T ss_dssp CCCEEEEEESSCCCTTSCEEEEEEEEEECSS
T ss_pred cCCCcccccCCccccCCCcEEEEEEeeEeCC
Confidence 4599999987643 3 5889999999993
No 32
>1r3h_A MHC H2-TL-T10-129; class IB MHC, gammadelta T cell ligand, immune system; 2.50A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1c16_A 1ypz_A*
Probab=23.89 E-value=53 Score=29.83 Aligned_cols=26 Identities=15% Similarity=0.224 Sum_probs=20.8
Q ss_pred cCcEEEeeecCCCC--ceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIEG--KKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~g--~~~c~hvhg~~p 59 (387)
.-|-++++.....+ ....|||.||+|
T Consensus 167 ~~P~v~v~~~~~~~~~~~L~C~~~gFyP 194 (260)
T 1r3h_A 167 DPPKAHVTRHPRPEGDVTLRCWALGFYP 194 (260)
T ss_dssp BCCEEEEECCCCTTSEEEEEEEEESCBS
T ss_pred CCCeeEEEcccccCCcceEEEEEeeEEC
Confidence 45899998876544 478999999999
No 33
>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_B 1k8i_B*
Probab=23.75 E-value=58 Score=28.32 Aligned_cols=27 Identities=19% Similarity=0.357 Sum_probs=21.0
Q ss_pred ccCcEEEeeecCCC--C--ceeEEEEeeccc
Q psy5919 33 QKVPVIRVFGNNIE--G--KKTCVFVHGVFP 59 (387)
Q Consensus 33 ~~vpvir~fG~t~~--g--~~~c~hvhg~~p 59 (387)
..-|-++++..... | ....|||.||+|
T Consensus 94 ~~~P~V~v~~~~~~~~~~~~~L~C~v~gFyP 124 (211)
T 2bc4_B 94 TRPPSVQVAKTTPFNTREPVMLACYVWGFYP 124 (211)
T ss_dssp CBCCEEEEEECCCCSCSSSEEEEEEEEEEBS
T ss_pred cCCCeeEEEeCCcccCCCceEEEEEEeeeEC
Confidence 35689999976542 3 478999999999
No 34
>1u58_A MHC-I homolog M144; MCMV, MHC-I homolog, immune system; 1.90A {Murid herpesvirus 1} SCOP: b.1.1.2 d.19.1.1 PDB: 1pqz_A
Probab=23.70 E-value=45 Score=30.44 Aligned_cols=26 Identities=15% Similarity=0.257 Sum_probs=20.2
Q ss_pred cCcEEEeeecCCCC---ceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIEG---KKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~g---~~~c~hvhg~~p 59 (387)
.-|-++++.....+ ....||+.||||
T Consensus 144 ~~P~V~v~~~~~~~~~~~~L~C~a~gFyP 172 (253)
T 1u58_A 144 VSPQLEVERRSSGREGGMRLRCFARDYYP 172 (253)
T ss_dssp BCCEEEEEEEECSSSSCEEEEEEEEEEBS
T ss_pred CCCcceeECCCCCCCCcccEEEEEeeEeC
Confidence 45888888765433 479999999999
No 35
>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*
Probab=23.57 E-value=50 Score=30.51 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=20.4
Q ss_pred cCcEEEeeecCCCC---ceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIEG---KKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~g---~~~c~hvhg~~p 59 (387)
.-|-++++.....+ ....|||.||+|
T Consensus 185 ~~P~v~v~~~~~~~~~~~~L~C~a~gFyP 213 (283)
T 1onq_A 185 VKPEAWLSHGPSPGPGHLQLVCHVSGFYP 213 (283)
T ss_dssp BCCEEEEEEECCCSTTEEEEEEEEEEEBS
T ss_pred cCceEEEEeccCCCCCceeEEEEEEeEEC
Confidence 45889998875443 478999999999
No 36
>4aen_A HLA class II histocompatibility antigen, DR alpha; immune system, SELF antigen, invariant chain, CLIP; 2.20A {Homo sapiens}
Probab=23.53 E-value=56 Score=28.94 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=21.3
Q ss_pred ccCcEEEeeecCCC--C--ceeEEEEeeccc
Q psy5919 33 QKVPVIRVFGNNIE--G--KKTCVFVHGVFP 59 (387)
Q Consensus 33 ~~vpvir~fG~t~~--g--~~~c~hvhg~~p 59 (387)
..-|.+++|-..+. | ....|||.||+|
T Consensus 99 ~~~P~V~v~~~~~~~~~~~~tL~C~a~gFyP 129 (207)
T 4aen_A 99 NVPPEVTVLTNSPVELREPNVLICFIDKFTP 129 (207)
T ss_dssp CBCCEEEEEESSCCCTTSCEEEEEEEEEEBS
T ss_pred CCCCeEEEEcCCcccccCceeEEEEEeeecC
Confidence 34689999977543 3 678999999999
No 37
>2h26_A CD1B antigen, T-cell surface glycoprotein CD1B; lipid, endogenous ligand, phosphatidylcholine, MHC, antigen presentation, immune system; HET: NAG FUC 6PL 6UL; 1.80A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3t8x_A* 1gzq_A* 1gzp_A* 1uqs_A* 3l9r_A*
Probab=22.67 E-value=54 Score=30.34 Aligned_cols=26 Identities=15% Similarity=0.201 Sum_probs=19.9
Q ss_pred cCcEEEeeecCCC-C--ceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIE-G--KKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~-g--~~~c~hvhg~~p 59 (387)
.-|-++++..... | ..+.|||.||+|
T Consensus 185 ~~P~v~v~~~~~~~~~~~~L~C~a~gFyP 213 (286)
T 2h26_A 185 VKPEAWLSSGPSPGPGRLQLVCHVSGFYP 213 (286)
T ss_dssp BCCEEEEEEESCCSTTEEEEEEEEEEEBS
T ss_pred cCCceEEEeccCCCCCcceEEEEEEEEEC
Confidence 3488888876433 3 469999999998
No 38
>2yf1_A Major histocompatibility complex class I glycoPro haplotype B21; immune system, BF21, immune response, immunoglobulin domain; 2.75A {Gallus gallus} PDB: 2yez_A 2yf5_A 2yf6_A
Probab=22.39 E-value=51 Score=31.30 Aligned_cols=27 Identities=26% Similarity=0.528 Sum_probs=20.6
Q ss_pred cCcEEEeeecCCC-CceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNIE-GKKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~~-g~~~c~hvhg~~py 60 (387)
.-|-++++..... |....|||.||+|=
T Consensus 201 ~~P~v~v~~~~~~~~~~L~C~a~gFyP~ 228 (329)
T 2yf1_A 201 ERPEVRVWGKEADGILTLSCRAHGFYPR 228 (329)
T ss_dssp BCCEEEEEEEECSSCEEEEEEEEEEBSS
T ss_pred cCCcceeeccCCCCCcceEEEEEEEECC
Confidence 4588888877543 33899999999993
No 39
>2p24_A H-2 class II histocompatibility antigen, A-U ALPH; MHC, I-AU, immunoglobulin fold, MBP, immune system; 2.15A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=22.11 E-value=61 Score=29.03 Aligned_cols=27 Identities=30% Similarity=0.535 Sum_probs=21.5
Q ss_pred cCcEEEeeecCCC--C--ceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNIE--G--KKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~~--g--~~~c~hvhg~~py 60 (387)
.-|-+++|..... | ...-||+.||+|=
T Consensus 119 ~~P~V~v~~~~~~~~~~~~tL~C~~~gFyP~ 149 (236)
T 2p24_A 119 EAPQATVFPKSPVLLGQPNTLICFVDNIFPP 149 (236)
T ss_dssp CCCEEEEEESSCCCTTCCEEEEEEEEEECSS
T ss_pred cCCcceeeCCCccccCCcceEEEEEEEEcCC
Confidence 4599999987642 2 5889999999993
No 40
>2oyo_A Uncharacterized peroxidase-related protein; YP_604910.1, uncharacterised peroxidase-related, uncharacter peroxidase-related; 1.51A {Deinococcus geothermalis} SCOP: a.152.1.3
Probab=21.36 E-value=30 Score=29.94 Aligned_cols=33 Identities=30% Similarity=0.264 Sum_probs=27.6
Q ss_pred hhHHhccccccHHHHHHHHHHhhccccccccCC
Q psy5919 354 QDLLDVKSGALYLKLKDLVSACSSHVYNCEPTN 386 (387)
Q Consensus 354 ~Dl~~v~~G~l~~~l~~l~~~~~~Hv~~C~lC~ 386 (387)
.+.+..++|.|-+.+++|+....+.+.+|.-|.
T Consensus 63 ~~~~~~~~~~L~~~~rEli~l~vs~~ngC~yC~ 95 (196)
T 2oyo_A 63 FNLLLNKEGYLTNAERELVAVVVSGVNRCLYCA 95 (196)
T ss_dssp HHHHHTSCCSSCHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHhcCCCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 333434579999999999999999999999985
No 41
>1t7v_A Zinc-alpha-2-glycoprotein; MHC class I homolog, PEG, lipid binding protein; HET: NAG P6G; 1.95A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1t7w_A* 1t7x_A* 1t7y_A* 1t7z_A* 1t80_A* 2icn_A* 3es6_A* 1zag_A*
Probab=21.05 E-value=59 Score=29.83 Aligned_cols=26 Identities=19% Similarity=0.291 Sum_probs=20.5
Q ss_pred cCcEEEeeecCCC--CceeEEEEeeccc
Q psy5919 34 KVPVIRVFGNNIE--GKKTCVFVHGVFP 59 (387)
Q Consensus 34 ~vpvir~fG~t~~--g~~~c~hvhg~~p 59 (387)
.-|-++++..... .....|||.||+|
T Consensus 185 ~~P~v~v~~~~~~~~~~~L~C~~~gFyP 212 (278)
T 1t7v_A 185 DPPSVVVTSHQAPGEKKKLKCLAYDFYP 212 (278)
T ss_dssp BCCEEEEEEEECTTSCEEEEEEEEEEBS
T ss_pred CCCccccccCCccCCceeEEEEEeeEEc
Confidence 3588888876543 4578999999999
No 42
>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_B* 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B* 1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D 2z31_D 3mbe_B* 1aqd_B 3pdo_B 3pgc_B 3pgd_B 1klu_B ...
Probab=20.44 E-value=64 Score=27.74 Aligned_cols=27 Identities=11% Similarity=0.148 Sum_probs=19.3
Q ss_pred cCcEEEeeecCC----CCceeEEEEeeccce
Q psy5919 34 KVPVIRVFGNNI----EGKKTCVFVHGVFPY 60 (387)
Q Consensus 34 ~vpvir~fG~t~----~g~~~c~hvhg~~py 60 (387)
.-|.++++.... ......|||.||+|=
T Consensus 93 ~~P~V~v~~~~~~~~~~~~~L~C~v~gFyP~ 123 (198)
T 1uvq_B 93 VEPTVTISPSRTEALNHHNLLVCSVTDFYPG 123 (198)
T ss_dssp BCCEEEEEEC--------CEEEEEEEEEBSS
T ss_pred ccceEEEEecCcccCCCCcEEEEEEeeEeCC
Confidence 458999997643 235789999999993
No 43
>2gmy_A Hypothetical protein ATU0492; structural genomics, PSI, protein structure initiative; 1.60A {Agrobacterium tumefaciens str} SCOP: a.152.1.3
Probab=20.33 E-value=22 Score=29.58 Aligned_cols=27 Identities=19% Similarity=0.236 Sum_probs=24.9
Q ss_pred cccccHHHHHHHHHHhhccccccccCC
Q psy5919 360 KSGALYLKLKDLVSACSSHVYNCEPTN 386 (387)
Q Consensus 360 ~~G~l~~~l~~l~~~~~~Hv~~C~lC~ 386 (387)
.+|.|-+.+++|+......+.+|.-|.
T Consensus 26 ~~~~L~~~~rELv~l~vs~~ngC~yC~ 52 (153)
T 2gmy_A 26 QSSGLEHRFIHLIKLRASIINGCAFCV 52 (153)
T ss_dssp HTSSCCHHHHHHHHHHHHHHTTCHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 468999999999999999999999984
No 44
>1mhc_A MHC class I antigen H2-M3; histocompatibility antigen/peptide, histocompatibility antig peptide complex; HET: FME NAG; 2.10A {Mus musculus} SCOP: b.1.1.2 d.19.1.1
Probab=20.24 E-value=63 Score=29.75 Aligned_cols=26 Identities=15% Similarity=0.179 Sum_probs=20.3
Q ss_pred CcEEEeeecCCCC--ceeEEEEeeccce
Q psy5919 35 VPVIRVFGNNIEG--KKTCVFVHGVFPY 60 (387)
Q Consensus 35 vpvir~fG~t~~g--~~~c~hvhg~~py 60 (387)
-|-++++.....| ....|||.||+|=
T Consensus 184 ~P~v~v~~~~~~~~~~~L~C~~~gFyP~ 211 (282)
T 1mhc_A 184 PPKAHVAHHPRPKGDVTLRCWALGFYPA 211 (282)
T ss_dssp CCEEEEEEEECTTSCEEEEEEEEEEBSS
T ss_pred CCceEEEeccCCCCceeEEEEEccEECC
Confidence 4888888776443 4789999999993
No 45
>2prr_A Alkylhydroperoxidase AHPD core: uncharacterized P related protein; YP_296737.1, carboxymuconolactone decarboxylase family; HET: PGE; 2.15A {Ralstonia eutropha} SCOP: a.152.1.3
Probab=20.22 E-value=37 Score=29.42 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=25.6
Q ss_pred ccccccHHHHHHHHHHhhccccccccCC
Q psy5919 359 VKSGALYLKLKDLVSACSSHVYNCEPTN 386 (387)
Q Consensus 359 v~~G~l~~~l~~l~~~~~~Hv~~C~lC~ 386 (387)
.++|.|-+.+++|+......+.+|.-|.
T Consensus 64 ~~~~~L~~~~rELi~l~vs~~ngC~yC~ 91 (197)
T 2prr_A 64 LKDGGLTKGEREMIVVATSAANQCLYCV 91 (197)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHHcCCHHHH
Confidence 3578999999999999999999999995
Done!