Your job contains 1 sequence.
>psy5919
MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY
LYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE
PITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEP
YHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSL
PKLSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILLGQEPHLLMD
PDVYSMQDLLDVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLMDPDVYSMQDLLDVK
SGALYLKLKDLVSACSSHVYNCEPTNA
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5919
(387 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 429 1.9e-39 2
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 434 3.5e-39 1
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 429 5.8e-39 2
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 424 9.5e-39 2
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 425 1.9e-38 2
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 425 2.0e-38 2
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 427 3.2e-38 1
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 418 2.9e-37 1
UNIPROTKB|F1NQT0 - symbol:REV3L "DNA polymerase" species:... 379 3.9e-33 1
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 331 4.9e-32 2
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 339 7.2e-32 2
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 322 1.3e-30 2
UNIPROTKB|I3LKI3 - symbol:I3LKI3 "Uncharacterized protein... 294 5.2e-26 1
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 220 7.7e-26 2
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 300 3.8e-25 1
UNIPROTKB|F1P7E8 - symbol:REV3L "DNA polymerase" species:... 288 1.8e-23 1
SGD|S000006088 - symbol:REV3 "Catalytic subunit of DNA po... 197 1.8e-19 2
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 162 2.2e-14 2
UNIPROTKB|A8IZI7 - symbol:CHLREDRAFT_117850 "Predicted pr... 176 7.3e-13 1
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 201 1.0e-12 1
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 189 2.0e-11 1
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 189 2.3e-11 1
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 195 4.4e-11 3
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 182 1.4e-10 1
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 189 1.4e-10 2
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 189 1.4e-10 2
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 178 3.8e-10 1
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 178 3.9e-10 1
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 185 4.1e-10 2
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 151 4.7e-10 2
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 187 1.8e-09 3
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 169 3.7e-09 1
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 169 3.8e-09 1
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 158 6.3e-08 1
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 157 7.8e-08 1
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 157 7.8e-08 1
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 156 1.0e-07 1
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 151 3.5e-07 1
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 149 6.0e-07 1
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 143 2.7e-06 1
GENEDB_PFALCIPARUM|PF10_0362 - symbol:PF10_0362 "DNA poly... 144 4.8e-06 1
UNIPROTKB|Q8IJ38 - symbol:PF10_0362 "DNA polymerase" spec... 144 4.8e-06 1
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 132 4.8e-06 2
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 132 4.8e-06 2
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 127 0.00015 1
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 429 (156.1 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 81/174 (46%), Positives = 117/174 (67%)
Query: 69 PITET-IVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETM 126
PI E + +SE R ++KVPV+R+FG G+KTC+ +HG+FPY+Y+P+ +
Sbjct: 16 PIRELDVCYSEFRESDVKKVPVVRIFGATPAGQKTCLHLHGIFPYIYVPYDGFGQEADRY 75
Query: 127 LQQLAASIDKALNIALGYKDS-VQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSK 185
L+Q+A SID+ALNI++G S VQH+F + + P YGYH E++F+KI LY P + +
Sbjct: 76 LRQVAYSIDRALNISMGNPSSNVQHIFKVVLVTGMPFYGYHMREKSFMKIFLYNPQMVKR 135
Query: 186 LEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETS 239
+ +LL GAV N+ FQP+E+HIP++LQ IDYNLYGM+ I VKFR T+
Sbjct: 136 VSELLQAGAVMNKSFQPHEAHIPFLLQLFIDYNLYGMNMISLAAVKFRKSRATA 189
Score = 200 (75.5 bits), Expect = 2.3e-11, Sum P(2) = 2.3e-11
Identities = 33/65 (50%), Positives = 48/65 (73%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++MS PI D +SE R ++KVPV+R+FG G+KTC+ +HG+FPY
Sbjct: 1 MFSVRIVTADYYMSSPIRELDVCYSEFRESDVKKVPVVRIFGATPAGQKTCLHLHGIFPY 60
Query: 61 LYIPF 65
+Y+P+
Sbjct: 61 IYVPY 65
Score = 43 (20.2 bits), Expect = 1.9e-39, Sum P(2) = 1.9e-39
Identities = 25/113 (22%), Positives = 48/113 (42%)
Query: 242 KLSHCQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILLGQEPHLLMDP 301
++S C+LE D A V++ ++ + + G+ D R + H+ D
Sbjct: 239 RVSVCELEVDAVAAD-VLNRLEIENQIGRNPGLQAIWDD---EKQRRRQRSESSHI--DV 292
Query: 302 DVYSMQDLLDV-KSGALYLK-LKDLVSACSIFRMRAILLGQEPHLLMDPDVYS 352
+DL +V +S +++K +KD++ +A G E D +YS
Sbjct: 293 TESQDRDLAEVAESEKIFMKRVKDILRENEFDMTQA---GSEMDSFPDLSLYS 342
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 434 (157.8 bits), Expect = 3.5e-39, P = 3.5e-39
Identities = 93/210 (44%), Positives = 133/210 (63%)
Query: 76 HSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPIT--ETMLQQLAAS 133
+SELR I++VPVIRVFG N G+KTC+ VHGVFPYLYIP+ + E + Q+A
Sbjct: 34 YSELRGKEIKRVPVIRVFGGNSRGQKTCMHVHGVFPYLYIPYDKKDFESLERGILQMAMH 93
Query: 134 IDKALNIALGYKDS-VQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLN 192
+DKA+NI+LG S QHVF I + K P YGYH E FLKI ++ P + + +LL +
Sbjct: 94 LDKAINISLGQGSSNAQHVFKIQLVKGIPFYGYHRVEHQFLKIYMFNPRFVRRAANLLQS 153
Query: 193 GAVFNERFQPYESHIPYILQFCIDYNLYGMS--NIEFNMVKFRSDSETS-LP--KLSHCQ 247
GA+ ++ F P+ESH+PYILQF IDYNLYGMS ++ ++KFR + + +P + Q
Sbjct: 154 GAILSKNFSPHESHVPYILQFMIDYNLYGMSYVHVPLEVLKFRRNHDDDVIPYANVKQAQ 213
Query: 248 LEADVKAESIVVDMAANDSDVATSGGITRY 277
L D+ V +A + DV+++ + R+
Sbjct: 214 L-LDITTAKKVA-CSALEVDVSSNFILNRF 241
Score = 210 (79.0 bits), Expect = 2.3e-13, P = 2.3e-13
Identities = 38/65 (58%), Positives = 49/65 (75%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
++S+ +V DF+M KP DP +SELR I++VPVIRVFG N G+KTC+ VHGVFPY
Sbjct: 11 VYSVRLVIADFYMEKPQFGMDPCYSELRGKEIKRVPVIRVFGGNSRGQKTCMHVHGVFPY 70
Query: 61 LYIPF 65
LYIP+
Sbjct: 71 LYIPY 75
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 429 (156.1 bits), Expect = 5.8e-39, Sum P(2) = 5.8e-39
Identities = 82/159 (51%), Positives = 111/159 (69%)
Query: 77 SELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETMLQQLAASID 135
S L L ++KVPV+RVFG G+KTC+ +HG+FPYLY+P+ + E+ L Q+A SID
Sbjct: 25 SPLTQLPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYDGYGQQPESYLSQMAFSID 84
Query: 136 KALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGA 194
+ALN+ALG S QHVF +S+ P YGYH ER F+KI LY P + ++ +LL +GA
Sbjct: 85 RALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYNPAMVKRICELLQSGA 144
Query: 195 VFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 145 IMNKCYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 194 (73.4 bits), Expect = 3.3e-10, Sum P(2) = 3.3e-10
Identities = 33/65 (50%), Positives = 47/65 (72%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++M+ P+ D S L L ++KVPV+RVFG G+KTC+ +HG+FPY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDTCQSPLTQLPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 61 LYIPF 65
LY+P+
Sbjct: 61 LYVPY 65
Score = 39 (18.8 bits), Expect = 5.8e-39, Sum P(2) = 5.8e-39
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 228 NMVKFRSDSETSLPKLSHCQLEADVKAESIV 258
NM++ D++ S H EA + E+I+
Sbjct: 353 NMIEVHKDTDLSKGNTKHKVEEALINEEAIL 383
Score = 38 (18.4 bits), Expect = 7.4e-39, Sum P(2) = 7.4e-39
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 243 LSHCQLEADVKAESIV 258
LS C+LE D A I+
Sbjct: 231 LSTCELEVDAVAADIL 246
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 424 (154.3 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
Identities = 81/159 (50%), Positives = 110/159 (69%)
Query: 77 SELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETMLQQLAASID 135
S L ++KVPV+RVFG G+KTC+ +HG+FPYLY+P+ + E+ L Q+A SID
Sbjct: 25 SPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYDGYGQQPESYLSQMAFSID 84
Query: 136 KALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGA 194
+ALN+ALG S QHVF +S+ P YGYH ER F+KI LY P + ++ +LL +GA
Sbjct: 85 RALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYNPTMVKRICELLQSGA 144
Query: 195 VFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 145 IMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 189 (71.6 bits), Expect = 5.9e-10, Sum P(2) = 5.9e-10
Identities = 32/65 (49%), Positives = 46/65 (70%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++M+ P+ D S L ++KVPV+RVFG G+KTC+ +HG+FPY
Sbjct: 1 MFSVRIVTADYYMASPLQGLDTCQSPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 61 LYIPF 65
LY+P+
Sbjct: 61 LYVPY 65
Score = 42 (19.8 bits), Expect = 9.5e-39, Sum P(2) = 9.5e-39
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 228 NMVKFRSDSETSLPKLSHCQLEADVKAESIV 258
NMV+ D E+S H EA + E+I+
Sbjct: 353 NMVEVHKDKESSKGHTRHKVEEALINEEAIL 383
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 425 (154.7 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 83/162 (51%), Positives = 110/162 (67%)
Query: 74 IVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETMLQQLAA 132
I S L ++KVPV+RVFG G+KTC+ +HGVFPYLY+P+ + E L Q+A
Sbjct: 22 ICQSPLTQHPVKKVPVVRVFGATPAGQKTCLHLHGVFPYLYVPYDGYGQQPERYLSQMAL 81
Query: 133 SIDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLL 191
SID+ALN+ALG S QHVF +S+ P YGYH ER F+KI LY P + ++ +LL
Sbjct: 82 SIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYNPAMVKRICELLQ 141
Query: 192 NGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
+GA+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 142 SGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 186 (70.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++M+ P+ D S L ++KVPV+RVFG G+KTC+ +HGVFPY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDICQSPLTQHPVKKVPVVRVFGATPAGQKTCLHLHGVFPY 60
Query: 61 LYIPF 65
LY+P+
Sbjct: 61 LYVPY 65
Score = 38 (18.4 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 243 LSHCQLEADVKAESIV 258
LS C+LE D A I+
Sbjct: 231 LSTCELEVDAVAADIL 246
Score = 38 (18.4 bits), Expect = 1.9e-38, Sum P(2) = 1.9e-38
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 235 DSETSLPKLSHCQLEADVKAESIVVD-----MAANDSDVATSGGI 274
+S+ S P+ C+L ++E I + ND V SG +
Sbjct: 278 NSQISQPESQDCRLVPATESEKIFQKRLQEILKQNDFSVTLSGSV 322
Score = 37 (18.1 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 228 NMVKFRSDSETSLPKLSHCQLEADVKAESIV 258
NM++ D++ S H EA + E+I+
Sbjct: 353 NMIEVHRDNDWSKGNTKHKVEEALINEEAIL 383
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 425 (154.7 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 83/162 (51%), Positives = 110/162 (67%)
Query: 74 IVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETMLQQLAA 132
I S L ++KVPV+RVFG G+KTC+ +HGVFPYLY+P+ + E L Q+A
Sbjct: 22 ICQSPLTQHPVKKVPVVRVFGATPAGQKTCLHLHGVFPYLYVPYDGYGQQPERYLSQMAL 81
Query: 133 SIDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLL 191
SID+ALN+ALG S QHVF +S+ P YGYH ER F+KI LY P + ++ +LL
Sbjct: 82 SIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYNPAMVKRICELLQ 141
Query: 192 NGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
+GA+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 142 SGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 186 (70.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 33/65 (50%), Positives = 46/65 (70%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++M+ P+ D S L ++KVPV+RVFG G+KTC+ +HGVFPY
Sbjct: 1 MFSVRIVTADYYMASPLPGLDICQSPLTQHPVKKVPVVRVFGATPAGQKTCLHLHGVFPY 60
Query: 61 LYIPF 65
LY+P+
Sbjct: 61 LYVPY 65
Score = 38 (18.4 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 243 LSHCQLEADVKAESIV 258
LS C+LE D A I+
Sbjct: 231 LSTCELEVDAVAADIL 246
Score = 38 (18.4 bits), Expect = 2.0e-38, Sum P(2) = 2.0e-38
Identities = 12/45 (26%), Positives = 20/45 (44%)
Query: 235 DSETSLPKLSHCQLEADVKAESIVVD-----MAANDSDVATSGGI 274
+S+ S P+ C+L ++E I + ND V SG +
Sbjct: 278 NSQISQPESQDCRLVPATESEKIFQKRLQEILKQNDFSVTLSGSV 322
Score = 37 (18.1 bits), Expect = 2.5e-38, Sum P(2) = 2.5e-38
Identities = 9/31 (29%), Positives = 16/31 (51%)
Query: 228 NMVKFRSDSETSLPKLSHCQLEADVKAESIV 258
NM++ D++ S H EA + E+I+
Sbjct: 353 NMIEVHRDNDWSKGNTKHKVEEALINEEAIL 383
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 427 (155.4 bits), Expect = 3.2e-38, P = 3.2e-38
Identities = 81/162 (50%), Positives = 111/162 (68%)
Query: 74 IVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETMLQQLAA 132
I S L ++KVPV+R+FG G+KTC+ +HG+FPYLY+P+ + E+ L Q+A
Sbjct: 22 ICQSPLTQAPVKKVPVVRIFGATPAGQKTCLHLHGIFPYLYVPYDGYGQQPESYLSQMAF 81
Query: 133 SIDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLL 191
SID+ALN+ALG S QHVF +S+ P YGYH ER F+KI LY P + ++ +LL
Sbjct: 82 SIDRALNVALGNPSSTAQHVFKVSVVSGMPFYGYHEKERHFMKIYLYNPAMVKRICELLQ 141
Query: 192 NGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
+GA+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 142 SGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 186 (70.5 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 31/65 (47%), Positives = 46/65 (70%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++M+ P+ D S L ++KVPV+R+FG G+KTC+ +HG+FPY
Sbjct: 1 MFSVRIVTADYYMASPLQGLDICQSPLTQAPVKKVPVVRIFGATPAGQKTCLHLHGIFPY 60
Query: 61 LYIPF 65
LY+P+
Sbjct: 61 LYVPY 65
Score = 38 (18.4 bits), Expect = 3.3e-09, Sum P(2) = 3.3e-09
Identities = 27/111 (24%), Positives = 49/111 (44%)
Query: 155 SICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFC 214
+I KF Y H +L + L+ Y++ + L+N A R +S + + C
Sbjct: 144 AIMNKF--YQPHEAHIPYL-LQLFIDYNLYGMN--LINLAAVKFRKARRKSKVNFTTGSC 198
Query: 215 IDYNLYGMSNIEFNMVKFRS-DSETSL------PKLSHCQLEADVKAESIV 258
D L G +++ + ++ + +SL P+ S C+LE D A I+
Sbjct: 199 KD-RLPGKNSLTGTLFRWEEGEIPSSLILEGVEPQ-STCELEVDAVAADIL 247
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 418 (152.2 bits), Expect = 2.9e-37, P = 2.9e-37
Identities = 78/152 (51%), Positives = 108/152 (71%)
Query: 84 IQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETMLQQLAASIDKALNIAL 142
++KVPV+RVFG G+KTC+ +HG+FPYLY+P+ + E+ L Q+A SID+ALN+AL
Sbjct: 32 VKKVPVVRVFGATPAGQKTCLHLHGIFPYLYVPYDGYGQQPESYLSQMAFSIDRALNVAL 91
Query: 143 GYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQ 201
G S QHVF +S+ P YGYH E+ F+KI LY P + ++ +LL +GA+ N+ +Q
Sbjct: 92 GNPSSTAQHVFKVSLVSGMPFYGYHEKEKHFMKIYLYNPAMVKRICELLQSGAIMNKFYQ 151
Query: 202 PYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
P+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 152 PHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 183
Score = 181 (68.8 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
MFS+ IVT D++M+ P+ D L ++KVPV+RVFG G+KTC+ +HG+FPY
Sbjct: 1 MFSVRIVTADYYMASPLRGLDTCLCPLTQAPVKKVPVVRVFGATPAGQKTCLHLHGIFPY 60
Query: 61 LYIPF 65
LY+P+
Sbjct: 61 LYVPY 65
>UNIPROTKB|F1NQT0 [details] [associations]
symbol:REV3L "DNA polymerase" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 OMA:DGTADEN
GeneTree:ENSGT00550000074640 EMBL:AADN02002055 EMBL:AADN02002056
IPI:IPI00582758 Ensembl:ENSGALT00000024245 Uniprot:F1NQT0
Length = 3100
Score = 379 (138.5 bits), Expect = 3.9e-33, P = 3.9e-33
Identities = 74/139 (53%), Positives = 97/139 (69%)
Query: 99 GKKTCVFVHGVFPYLYIP---FHHEPITETMLQQLAASIDKALNIALGYKDS-VQHVFHI 154
G+KTC+ +HGVFPYLY+P F P E L+Q+A SID+ALN+ALG S +QHVF +
Sbjct: 1 GQKTCLHLHGVFPYLYVPYDGFGQHP--EHYLRQVAFSIDRALNVALGNPSSTIQHVFKV 58
Query: 155 SICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFC 214
S+ P YGYH ER F+KI LY P + ++ +LL GA+ N+ +QP+E+HIPY+LQ
Sbjct: 59 SLVSGMPFYGYHEKERQFMKIYLYNPAMVKRVCELLQGGAIMNKSYQPHEAHIPYLLQLF 118
Query: 215 IDYNLYGMSNIEFNMVKFR 233
IDYNLYGM+ I VKFR
Sbjct: 119 IDYNLYGMNLINLAAVKFR 137
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 331 (121.6 bits), Expect = 4.9e-32, Sum P(2) = 4.9e-32
Identities = 71/168 (42%), Positives = 96/168 (57%)
Query: 86 KVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETM---LQQLAASIDKALNIAL 142
KVPVIR+FG G+K CV VHG FPYLY+ + + +++ + L SID AL ++
Sbjct: 39 KVPVIRIFGTTETGQKICVHVHGAFPYLYVQYDGDLSPDSVRSAARSLHLSIDHALAVSY 98
Query: 143 ---GYKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNER 199
+ V HI++ K P YGYH R F KI L P ++++L DLLL GAV
Sbjct: 99 RRNAHDKKTVFVAHITLVKGVPFYGYHVGYRFFFKIYLLNPIYITRLADLLLQGAVMKRP 158
Query: 200 FQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSD--SETSLPKLSH 245
QPYESH+ Y+ Q+ DYNL+G + ++ KFRS LP LSH
Sbjct: 159 IQPYESHLQYVPQWMCDYNLFGCAFMKCGKAKFRSPIPEYLDLPDLSH 206
Score = 153 (58.9 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 41/122 (33%), Positives = 64/122 (52%)
Query: 2 FSMNIVTIDFFMSKPIAHFDPV--HSELRNL--VIQKVPVIRVFGNNIEGKKTCVFVHGV 57
F + + +D + + P + FDP + + N + KVPVIR+FG G+K CV VHG
Sbjct: 4 FQVRLNCVDHYQANP-SEFDPPLPYRDGNNEKGYMPKVPVIRIFGTTETGQKICVHVHGA 62
Query: 58 FPYLYIPFHHEPITETIVHSELRNLVIQKVPVIRV-FGNNVEGKKTCVFVHGVFPYLYIP 116
FPYLY+ + + ++ V S R+L + + V + N KKT VFV + +P
Sbjct: 63 FPYLYVQYDGD-LSPDSVRSAARSLHLSIDHALAVSYRRNAHDKKT-VFVAHITLVKGVP 120
Query: 117 FH 118
F+
Sbjct: 121 FY 122
Score = 65 (27.9 bits), Expect = 4.9e-32, Sum P(2) = 4.9e-32
Identities = 13/22 (59%), Positives = 16/22 (72%)
Query: 237 ETSLPKLSHCQLEADVKAESIV 258
E+ LPK SHC LEADV + I+
Sbjct: 221 ESVLPKQSHCPLEADVCVQDIL 242
Score = 39 (18.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 193 GAVFNERFQPYESHIPYILQFCI 215
G + +E P +SH P C+
Sbjct: 216 GWILDESVLPKQSHCPLEADVCV 238
Score = 39 (18.8 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 9/35 (25%), Positives = 14/35 (40%)
Query: 183 MSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDY 217
+ +ED + PY S I Y + +DY
Sbjct: 363 LQSIEDFFTDADGLTNLQLPYNSGIDYSEEQAVDY 397
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 339 (124.4 bits), Expect = 7.2e-32, Sum P(2) = 7.2e-32
Identities = 74/183 (40%), Positives = 108/183 (59%)
Query: 60 YLYIPFHHEP-ITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH 118
Y P ++P + + HS+L KVPVIRVFG+ G+K C +HG FPYL+I ++
Sbjct: 14 YQATPTQYDPCLRNDVRHSQL--FKEPKVPVIRVFGSTQTGQKVCAHIHGAFPYLFIEYN 71
Query: 119 HEPITETM---LQQLAASIDKALNIAL---GY-KDSVQHVFHISICKKFPMYGYHADERT 171
+ E + +L SID AL ++ Y +D+ ++V I++ K P YG+H +
Sbjct: 72 GKLDQEEVGAFSYRLHLSIDHALAVSYRQDAYARDTPKYVARITLVKGVPFYGFHVGYKY 131
Query: 172 FLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVK 231
+LKI + P M++L DLL G + +FQPYE+H+ YILQF DYNLYG IE + VK
Sbjct: 132 YLKIYMLNPVVMTRLADLLHQGVIMKRKFQPYEAHLQYILQFMTDYNLYGCGYIEASSVK 191
Query: 232 FRS 234
FR+
Sbjct: 192 FRA 194
Score = 131 (51.2 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 26/70 (37%), Positives = 44/70 (62%)
Query: 1 MFSMNIVTIDFFMSKPIAHFDP-VHSELRNLVI---QKVPVIRVFGNNIEGKKTCVFVHG 56
+F + + ID + + P +DP + +++R+ + KVPVIRVFG+ G+K C +HG
Sbjct: 3 VFKVRLNCIDHYQATP-TQYDPCLRNDVRHSQLFKEPKVPVIRVFGSTQTGQKVCAHIHG 61
Query: 57 VFPYLYIPFH 66
FPYL+I ++
Sbjct: 62 AFPYLFIEYN 71
Score = 56 (24.8 bits), Expect = 7.2e-32, Sum P(2) = 7.2e-32
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 239 SLPKLSHCQLEADVKAESIV 258
SLP+ SHC +E D+ + I+
Sbjct: 228 SLPRASHCPIEVDICVQDIL 247
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 322 (118.4 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 71/177 (40%), Positives = 101/177 (57%)
Query: 60 YLYIPFHHEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPF-- 117
Y P ++P + V R+ KVPVIRVFG+ +G+K C +HG FPYLY+ +
Sbjct: 14 YQATPTRYDPQFDQDVRFS-RSRKAAKVPVIRVFGSTDKGQKVCAHIHGAFPYLYVEYDG 72
Query: 118 HHEPITETMLQQLAASIDKALNIALGYKDSVQHVFHISICKKFPMYGYHADERTFLKILL 177
+ EP + LA S K +D ++V IS+ K P YG+H R +LKI L
Sbjct: 73 NLEPNKD---HALAISYRKD-----PIRDRPKYVARISLTKGIPFYGFHVGYRFYLKIYL 124
Query: 178 YEPYHMSKLEDLLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRS 234
+ P MS+L DLL G + + +FQPYE+H+ Y+LQF DYNLYG + ++ M FR+
Sbjct: 125 FNPVVMSRLVDLLQQGVIMSRKFQPYEAHLQYLLQFMADYNLYGCNYLDAAMATFRA 181
Score = 125 (49.1 bits), Expect = 2.0e-05, Sum P(2) = 2.0e-05
Identities = 25/61 (40%), Positives = 36/61 (59%)
Query: 9 IDFFMSKPIAHFDPVHSE----LRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYIP 64
ID + + P +DP + R+ KVPVIRVFG+ +G+K C +HG FPYLY+
Sbjct: 11 IDHYQATP-TRYDPQFDQDVRFSRSRKAAKVPVIRVFGSTDKGQKVCAHIHGAFPYLYVE 69
Query: 65 F 65
+
Sbjct: 70 Y 70
Score = 62 (26.9 bits), Expect = 1.3e-30, Sum P(2) = 1.3e-30
Identities = 11/20 (55%), Positives = 14/20 (70%)
Query: 239 SLPKLSHCQLEADVKAESIV 258
SLP+ SHC LE D+ E I+
Sbjct: 214 SLPRASHCSLEVDICVEDIL 233
>UNIPROTKB|I3LKI3 [details] [associations]
symbol:I3LKI3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR012337 Pfam:PF03104 GO:GO:0006260 GO:GO:0003676
SUPFAM:SSF53098 GO:GO:0003887 GeneTree:ENSGT00550000074640
EMBL:CT997815 EMBL:CU915528 Ensembl:ENSSSCT00000025331
Uniprot:I3LKI3
Length = 296
Score = 294 (108.6 bits), Expect = 5.2e-26, P = 5.2e-26
Identities = 58/113 (51%), Positives = 76/113 (67%)
Query: 130 LAASIDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLED 188
+A SID+ALN+ALG S QHVF +S+ P YGYH ER F+KI LY P + ++ +
Sbjct: 1 MAFSIDRALNVALGKPSSTAQHVFKVSLVSGMPFYGYHEKERHFMKIYLYNPAMVKRICE 60
Query: 189 LLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLP 241
LL +GA+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR S P
Sbjct: 61 LLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFRKARRKSDP 113
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 220 (82.5 bits), Expect = 7.7e-26, Sum P(2) = 7.7e-26
Identities = 45/138 (32%), Positives = 80/138 (57%)
Query: 149 QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESHIP 208
Q++F+ + + P YGYH+ ++ F+KI LY P ++++ +LL +G + + F+ +ESHIP
Sbjct: 146 QYIFNAKLVRGRPFYGYHSTDKIFIKIYLYNPDDINRVANLLRSGMIMSRCFRVFESHIP 205
Query: 209 YILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLE-ADVKAESIVVDMAANDSD 267
+ILQ +DYNL GMSNIEF FR L K + + + + S + + +++D
Sbjct: 206 FILQVFLDYNLSGMSNIEFTNAYFRLPLPEKLKKWGTKEYDLSQLNLNSNISESSSSDDC 265
Query: 268 VATSGGITRYLSDVLLNS 285
+ ++ D L+N+
Sbjct: 266 IENR----KWFKDSLINN 279
Score = 159 (61.0 bits), Expect = 7.7e-26, Sum P(2) = 7.7e-26
Identities = 29/86 (33%), Positives = 52/86 (60%)
Query: 2 FSMNIVTIDFFMSKPIAHFD----PVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGV 57
FS+ IV ID++ ++P+ D P+ S N I++VP++R+FG+ G+K C+ +H +
Sbjct: 18 FSVRIVDIDYYQTRPVQGLDVMVSPLSSSNNNKTIEEVPIVRIFGSTPAGQKCCLHLHQL 77
Query: 58 FPYLYIPFHHEPITETIVHSELRNLV 83
FPY +I + ++ V + +R LV
Sbjct: 78 FPYFFIEYTENSLSTEYVSTYIRKLV 103
Score = 121 (47.7 bits), Expect = 7.2e-22, Sum P(2) = 7.2e-22
Identities = 20/71 (28%), Positives = 40/71 (56%)
Query: 77 SELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDK 136
S N I++VP++R+FG+ G+K C+ +H +FPY +I + ++ + +
Sbjct: 45 SSNNNKTIEEVPIVRIFGSTPAGQKCCLHLHQLFPYFFIEYTENSLSTEYVSTYIRKLVS 104
Query: 137 ALNIALGYKDS 147
LN+AL + ++
Sbjct: 105 TLNLALNHSNN 115
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 300 (110.7 bits), Expect = 3.8e-25, P = 3.8e-25
Identities = 74/190 (38%), Positives = 102/190 (53%)
Query: 81 NLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETM-------LQQLAAS 133
N + VPVIRVFG N E + C F+H VFPY+Y+ + ET+ L QL S
Sbjct: 30 NEELTTVPVIRVFGLNEEAETVCCFIHNVFPYIYVEY--SSFAETLDLEVPDFLSQLQTS 87
Query: 134 IDKALNIALG-----YKDSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLED 188
I+ AL +A YK +VQ V + K P YGY + FLKI L+ P + +L D
Sbjct: 88 INYALALAARANPETYKPAVQSV---QLVKGIPFYGYSFCFQKFLKICLFSPKNRDRLVD 144
Query: 189 LLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQL 248
L GA+ N+ Q YESH+PY+LQF +D+NLYG + I+ + + D LS C +
Sbjct: 145 LFRQGAILNKVIQVYESHLPYLLQFMVDHNLYGCAPIDLDDSIIKRDD-----LLSFCNV 199
Query: 249 EADVKAESIV 258
E V +I+
Sbjct: 200 EVHVSPNAIL 209
>UNIPROTKB|F1P7E8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
Ensembl:ENSCAFT00000006343 Uniprot:F1P7E8
Length = 3058
Score = 288 (106.4 bits), Expect = 1.8e-23, P = 1.8e-23
Identities = 55/105 (52%), Positives = 74/105 (70%)
Query: 130 LAASIDKALNIALGYKDSV-QHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLED 188
+A SID+ALN+ALG S QHVF +S+ P YGYH E+ F+KI LY P + ++ +
Sbjct: 1 MAFSIDRALNVALGNPSSTAQHVFKVSLVSGMPFYGYHEKEKHFMKIYLYNPAMVKRICE 60
Query: 189 LLLNGAVFNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFR 233
LL +GA+ N+ +QP+E+HIPY+LQ IDYNLYGM+ I VKFR
Sbjct: 61 LLQSGAIMNKFYQPHEAHIPYLLQLFIDYNLYGMNLINLAAVKFR 105
>SGD|S000006088 [details] [associations]
symbol:REV3 "Catalytic subunit of DNA polymerase zeta"
species:4932 "Saccharomyces cerevisiae" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0070987 "error-free translesion synthesis"
evidence=IDA] [GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 SGD:S000006088
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 EMBL:BK006949
SUPFAM:SSF53098 EMBL:X96770 GO:GO:0003887 GO:GO:0070987
GO:GO:0042276 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 HOGENOM:HOG000194392 OrthoDB:EOG4FN7RT
EMBL:M29683 EMBL:Z73523 PIR:A33602 RefSeq:NP_015158.1
ProteinModelPortal:P14284 SMR:P14284 IntAct:P14284
MINT:MINT-2731570 STRING:P14284 PRIDE:P14284 EnsemblFungi:YPL167C
GeneID:855936 KEGG:sce:YPL167C CYGD:YPL167c OMA:DRWGYTH
NextBio:980687 Genevestigator:P14284 GermOnline:YPL167C
Uniprot:P14284
Length = 1504
Score = 197 (74.4 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 38/107 (35%), Positives = 62/107 (57%)
Query: 147 SVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYESH 206
++ V +S+ K P YGYH F KI L P +S++ +L+ +G +F ++F+ YESH
Sbjct: 133 NLNFVADVSVVKGIPFYGYHVGWNLFYKISLLNPSCLSRISELIRDGKIFGKKFEIYESH 192
Query: 207 IPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVK 253
IPY+LQ+ D+NL+G S I + FRS S+ + + D++
Sbjct: 193 IPYLLQWTADFNLFGCSWINVDRCYFRSPVLNSILDIDKLTINDDLQ 239
Score = 118 (46.6 bits), Expect = 1.8e-19, Sum P(2) = 1.8e-19
Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 2 FSMNIVTIDFFMSKPIAHFDPVHSELRNL-VIQKVPVIRVFGNNIEGKKTCVFVHGVFPY 60
F + + D++MSKP DP H E L +VP IRVFG G + VHG+ PY
Sbjct: 23 FRIQLNNQDYYMSKP-TFLDPSHGESLPLNQFSQVPNIRVFGALPTGHQVLCHVHGILPY 81
Query: 61 LYIPFHHEPITETIVHSELRNLVIQKVPVIRV 92
++I + + IT+T R + K +++
Sbjct: 82 MFIKYDGQ-ITDTSTLRHQRCAQVHKTLEVKI 112
Score = 93 (37.8 bits), Expect = 7.3e-17, Sum P(2) = 7.3e-17
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 86 KVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPI-TETMLQQLAASIDKALNIAL 142
+VP IRVFG G + VHG+ PY++I + + T T+ Q A + K L + +
Sbjct: 55 QVPNIRVFGALPTGHQVLCHVHGILPYMFIKYDGQITDTSTLRHQRCAQVHKTLEVKI 112
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 162 (62.1 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 73/304 (24%), Positives = 131/304 (43%)
Query: 84 IQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFH-HEPITETMLQQLAASIDKALNIAL 142
+++VPV+R+FG N G C VHG PY I H LA ++ + L L
Sbjct: 99 VKQVPVLRLFGVNAAGNSVCALVHGFEPYFLIERRPHWGADHIQALGLALNVGQEL---L 155
Query: 143 GYKDSV--QHVFHISICKKFPMYGYH--ADERTFLKILLYEPYHMSKLEDLLLNG---AV 195
G V V I ++ ++ + FLKI++ P ++ LL G +
Sbjct: 156 GKAKGVGGPAVTRIEPAERRSIWNFQPPGTSTAFLKIVVSVPNLVAPARGLLEGGMSLSA 215
Query: 196 FNE--RFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVK 253
N+ + YES++ + L+F +D + G + +E ++ ET+ P ++HCQ+EA ++
Sbjct: 216 VNDFVKCTTYESNVLFTLRFMVDCKVVGGNWVELPAGAYQL--ETARP-MTHCQIEAHIR 272
Query: 254 AESIVVDMAANDSDVATSGGITRYLS-DVLLNSMRAILLGQEPHLLMDP--DVYSMQDLL 310
+ ++ A D + ++ + R +S D+ + G P +DP + SM +
Sbjct: 273 YDKLISH--APDGEYSSVAPL-RIMSIDIECCGRK----GCFPEAKIDPVIQIASMVSVS 325
Query: 311 DVKSGALYLKLKDLVSACSIFRMRAILLGQEPHLLM---------DPDVYSMQDLLDVKS 361
G + + L S SI + E +L+ DPD+ ++L+
Sbjct: 326 GKMDGPVVKNIMTLGSCASIVGAEVMSFNDEAEMLLRWRDLLVESDPDIIIGYNILNFDL 385
Query: 362 GALY 365
LY
Sbjct: 386 PYLY 389
Score = 104 (41.7 bits), Expect = 2.2e-14, Sum P(2) = 2.2e-14
Identities = 21/55 (38%), Positives = 32/55 (58%)
Query: 9 IDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYI 63
+D+++++P A D V E +++VPV+R+FG N G C VHG PY I
Sbjct: 81 VDYYLAEPRAGVDTVPVE-----VKQVPVLRLFGVNAAGNSVCALVHGFEPYFLI 130
>UNIPROTKB|A8IZI7 [details] [associations]
symbol:CHLREDRAFT_117850 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR012337 GO:GO:0007346 GO:GO:0003676 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 GO:GO:0006287
GO:GO:0043625 KO:K02350 EMBL:DS496129 RefSeq:XP_001694422.1
EnsemblPlants:EDP02417 GeneID:5720007 KEGG:cre:CHLREDRAFT_117850
ProtClustDB:CLSN2696999 Uniprot:A8IZI7
Length = 135
Score = 176 (67.0 bits), Expect = 7.3e-13, P = 7.3e-13
Identities = 31/71 (43%), Positives = 45/71 (63%)
Query: 2 FSMNIVTIDFFMSKPIAHFDPVHSELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYL 61
F++ IV++D++M+ PI H D S L + +VPVIR+FG+ G+K CV VH FPY
Sbjct: 9 FTIRIVSLDYYMAPPIPHLDFCFSSLEGTTVDQVPVIRIFGSTPAGQKACVHVHRAFPYF 68
Query: 62 YIPFHHE-PIT 71
Y+P+ P T
Sbjct: 69 YVPYDESFPTT 79
Score = 170 (64.9 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 36/104 (34%), Positives = 55/104 (52%)
Query: 77 SELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHE-PITETMLQQLAASID 135
S L + +VPVIR+FG+ G+K CV VH FPY Y+P+ P T + S
Sbjct: 32 SSLEGTTVDQVPVIRIFGSTPAGQKACVHVHRAFPYFYVPYDESFPTTPNEGEWAMCSAV 91
Query: 136 KALNIALGYKDSV-QHVFH-ISICKKFPMYGYHADERTFLKILL 177
+AL + + + V H + + + P YGYH E+ F+K++L
Sbjct: 92 CLRRMALAIEAAAPRQVVHALQLVRGRPFYGYHLQEQLFIKVVL 135
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 201 (75.8 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 55/184 (29%), Positives = 96/184 (52%)
Query: 84 IQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASID-KALNIAL 142
I VPV+R+FG +EG C VHG PY YI + E ++L ++D K +
Sbjct: 99 IGPVPVVRMFGVTMEGNSVCCHVHGFCPYFYIEAPSQ-FEEHHCEKLQKALDQKVIADIR 157
Query: 143 GYKDSVQH-VFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGAVFNE-R 199
KD+VQ V + + +K ++GY+ D++ ++KI + P ++ LL + +E
Sbjct: 158 NNKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKISVTLPRFVAAASRLLKKEVIMSEID 217
Query: 200 FQP---YESHIPYILQFCIDYNLYGMSNIEFNMV--KFRSDSETSLPKLSHCQLEADVKA 254
FQ +E++I + ++F +D ++ G + IE M + R+ LP+ S CQ+E DV
Sbjct: 218 FQDCRAFENNIDFDIRFMVDTDVVGCNWIELPMGHWRIRNSHSKPLPE-SRCQIEVDVAF 276
Query: 255 ESIV 258
+ +
Sbjct: 277 DRFI 280
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 189 (71.6 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 55/182 (30%), Positives = 90/182 (49%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E ++E + ++L+A+I +
Sbjct: 121 VPILRAFGVTDEGVSVCCHIHGFAPYFYTPAPPGFGPEHLSE-LQRELSAAISRDQR--- 176
Query: 143 GYKDSV-QHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNG----AVF 196
G K+ V + +C + M+GYH + FL+I L P M+ LL G +
Sbjct: 177 GGKELTGPAVLAVELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLG 236
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAES 256
F PYE+++ + ++F +D ++ G + +E K+ E K + CQLEADV
Sbjct: 237 TPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYILRPEG---KATLCQLEADVLWSD 293
Query: 257 IV 258
++
Sbjct: 294 VI 295
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 189 (71.6 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 55/182 (30%), Positives = 90/182 (49%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E ++E + ++L+A+I +
Sbjct: 121 VPILRAFGVTNEGVSVCCHIHGFAPYFYTPAPPGFGPEHLSE-LQRELSAAISRDQR--- 176
Query: 143 GYKDSV-QHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNG----AVF 196
G K+ V + +C + M+GYH + FL+I L P M+ LL G +
Sbjct: 177 GGKELTGPAVLAVELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRLAGLG 236
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAES 256
F PYE+++ + ++F +D ++ G + +E K+ E K + CQLEADV
Sbjct: 237 TPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYILRPEG---KATLCQLEADVLWSD 293
Query: 257 IV 258
++
Sbjct: 294 VI 295
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 195 (73.7 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 56/188 (29%), Positives = 91/188 (48%)
Query: 86 KVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKA-LNIALGY 144
KVP++R+FG G C +HG PY Y+P + T L ++ L
Sbjct: 114 KVPIVRMFGVTDNGNSVCCHIHGFAPYFYVPAPNG-FTNAHLAGFQRELNSVVLKDMRSN 172
Query: 145 KDSVQ-HVFHISICKKFPMYGYHADE-RTFLKILLYEPYHMSKLEDLLLNGAVF----NE 198
KD++ V + I KK MY YH ++ FL+I + P ++ + LL G F +
Sbjct: 173 KDNIAVTVLAVDITKKESMYNYHGNKPHDFLRITMAMPRLVAPAKRLLEQGFKFANFATQ 232
Query: 199 RFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKF-----RSDSETS--LP-KLSHCQLEA 250
+Q +E++I + ++F +D N+ G IE K+ R + +T P K+S CQ E
Sbjct: 233 SYQAFEANIDFEIRFMVDSNVVGCCWIELPKGKYQLREERREGQTDSKYPGKVSLCQYEV 292
Query: 251 DVKAESIV 258
DV +S++
Sbjct: 293 DVAWDSLI 300
Score = 38 (18.4 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 19 HFDPVHSELRNLVIQKVPVIRVFGNNIEG 47
H P+H + L+ Q++ + G + G
Sbjct: 78 HASPLHPKSDTLIFQQIDLDYYLGAAVAG 106
Score = 38 (18.4 bits), Expect = 4.4e-11, Sum P(3) = 4.4e-11
Identities = 12/52 (23%), Positives = 20/52 (38%)
Query: 246 CQLEADVKAESIVVDMAANDSDVATSGGITRYLSDVLLNSMRAILLGQEPHL 297
C + + +S M D D+ T I + LLN + + P+L
Sbjct: 374 CFTQEKLMLQSWAEFMRTVDPDIITGYNIQNFDLPYLLNRAATLKVNMFPYL 425
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 182 (69.1 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 55/182 (30%), Positives = 89/182 (48%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VPV+R FG +G C +HG PY Y P F E +++ + ++L A+I +
Sbjct: 122 VPVLRAFGVTDDGVSVCCHIHGFAPYFYTPAPPGFGPEHLSD-LQRELNAAISRDQR--- 177
Query: 143 GYKDSV-QHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNG----AVF 196
G K+ V + +C + M+GYH + FL+I L P M+ LL G +
Sbjct: 178 GGKELTGPAVLAVELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVAGLG 237
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAES 256
F PYE+++ + ++F +D ++ G + +E K+ E K + CQLEADV
Sbjct: 238 TPSFAPYEANVDFEIRFMVDADVVGCNWLELPAGKYLLRPEG---KATLCQLEADVLWSD 294
Query: 257 IV 258
+V
Sbjct: 295 VV 296
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 189 (71.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 56/182 (30%), Positives = 90/182 (49%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E ++E + ++L A+I +
Sbjct: 118 VPILRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGAEHLSE-LQRELNAAISRDQR--- 173
Query: 143 GYKD-SVQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNG----AVF 196
G K+ S V I +C + M+GYH + FL+I L P M+ LL G +
Sbjct: 174 GGKELSGPAVLAIELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLG 233
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAES 256
F PYE+++ + ++F +D ++ G + +E K+ +E K + CQLE DV
Sbjct: 234 TPSFAPYEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEK---KATLCQLEVDVLWSD 290
Query: 257 IV 258
++
Sbjct: 291 VI 292
Score = 38 (18.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 278 LSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLL-DVKSGALYLKLKDLVSACSIFRMRAI 336
+++++ +S+R IL+ ++P D V +D++ D+ + + LV + R A
Sbjct: 836 VANLVTSSLRRILVDRDP----DGAVAHAKDVISDLLCNRI--DISQLVITKELTRAAAD 889
Query: 337 LLGQEPHL 344
G++ H+
Sbjct: 890 YAGKQAHV 897
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 189 (71.6 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 56/182 (30%), Positives = 90/182 (49%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E ++E + ++L A+I +
Sbjct: 118 VPILRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGAEHLSE-LQRELNAAISRDQR--- 173
Query: 143 GYKD-SVQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNG----AVF 196
G K+ S V I +C + M+GYH + FL+I L P M+ LL G +
Sbjct: 174 GGKELSGPAVLAIELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLG 233
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAES 256
F PYE+++ + ++F +D ++ G + +E K+ +E K + CQLE DV
Sbjct: 234 TPSFAPYEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEK---KATLCQLEVDVLWSD 290
Query: 257 IV 258
++
Sbjct: 291 VI 292
Score = 38 (18.4 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 278 LSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLL-DVKSGALYLKLKDLVSACSIFRMRAI 336
+++++ +S+R IL+ ++P D V +D++ D+ + + LV + R A
Sbjct: 836 VANLVTSSLRRILVDRDP----DGAVAHAKDVISDLLCNRI--DISQLVITKELTRAAAD 889
Query: 337 LLGQEPHL 344
G++ H+
Sbjct: 890 YAGKQAHV 897
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 178 (67.7 bits), Expect = 3.8e-10, P = 3.8e-10
Identities = 54/184 (29%), Positives = 89/184 (48%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E + + + ++L A+I +
Sbjct: 122 VPILRAFGVTDEGVSVCCHIHGFAPYFYTPAPSGFGSEHLGD-LQRELNAAISRDQR--- 177
Query: 143 GYKDSV-QHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNG----AVF 196
G K+ V + +C + M+GYH + FL+I L P ++ LL G +
Sbjct: 178 GGKELTGPAVLSVELCSRESMFGYHGHGPSPFLRITLALPRLVAPARRLLEQGIRVAGLG 237
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKF--RSDSETSLPKLSHCQLEADVKA 254
F PYE+++ + ++F +D ++ G + +E K+ R + +L CQLEADV
Sbjct: 238 TPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAEKYILRPQGKATL-----CQLEADVLW 292
Query: 255 ESIV 258
+V
Sbjct: 293 SDVV 296
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 178 (67.7 bits), Expect = 3.9e-10, P = 3.9e-10
Identities = 54/184 (29%), Positives = 89/184 (48%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C +HG PY Y P F E + + + ++L A+I +
Sbjct: 122 VPILRAFGVTDEGVSVCCHIHGFAPYFYTPAPSGFGSEHLGD-LQRELNAAISRDQR--- 177
Query: 143 GYKDSV-QHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNG----AVF 196
G K+ V + +C + M+GYH + FL+I L P ++ LL G +
Sbjct: 178 GGKELTGPAVLSVELCSRESMFGYHGHGPSPFLRITLALPRLVAPARRLLEQGIRVAGLG 237
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKF--RSDSETSLPKLSHCQLEADVKA 254
F PYE+++ + ++F +D ++ G + +E K+ R + +L CQLEADV
Sbjct: 238 TPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAEKYILRPQGKATL-----CQLEADVLW 292
Query: 255 ESIV 258
+V
Sbjct: 293 SDVV 296
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 185 (70.2 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 56/182 (30%), Positives = 89/182 (48%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIP----FHHEPITETMLQQLAASIDKALNIAL 142
VP++R FG EG C + G PY Y P F E ++E + Q+L A+I +
Sbjct: 120 VPILRAFGVTDEGFSVCCHIQGFAPYFYTPAPPGFGAEHLSE-LQQELNAAISRDQR--- 175
Query: 143 GYKD-SVQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGA----VF 196
G K+ S V I +C + M+GYH + FL+I L P M+ LL G +
Sbjct: 176 GGKELSGPAVLAIELCSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGVRVPGLG 235
Query: 197 NERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAES 256
F PYE+++ + ++F +D ++ G + +E K+ +E K + CQLE DV
Sbjct: 236 TPSFAPYEANVDFEIRFMVDADIVGCNWLELPAGKYVRRAEK---KATLCQLEVDVLWSD 292
Query: 257 IV 258
++
Sbjct: 293 VI 294
Score = 38 (18.4 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 15/68 (22%), Positives = 35/68 (51%)
Query: 278 LSDVLLNSMRAILLGQEPHLLMDPDVYSMQDLL-DVKSGALYLKLKDLVSACSIFRMRAI 336
+++++ +S+R IL+ ++P D V +D++ D+ + + LV + R A
Sbjct: 838 VANLVTSSLRRILVDRDP----DGAVAHAKDVISDLLCNRI--DISQLVITKELTRAAAD 891
Query: 337 LLGQEPHL 344
G++ H+
Sbjct: 892 YAGKQAHV 899
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 151 (58.2 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 29/88 (32%), Positives = 49/88 (55%)
Query: 146 DSVQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNERFQPYES 205
+ +++V ++S+ K P YG++ F KI L P ++ L + L +G++ YE+
Sbjct: 149 ECLRYVANVSVVKGVPFYGFNVGWSVFYKISLLNPRFVTLLANKLRDGSILGRSVSVYEA 208
Query: 206 HIPYILQFCIDYNLYGMSNIEFNMVKFR 233
HIPY+LQ D+NLYG + + FR
Sbjct: 209 HIPYLLQTSADFNLYGCAYLNLTDCYFR 236
Score = 77 (32.2 bits), Expect = 4.7e-10, Sum P(2) = 4.7e-10
Identities = 17/49 (34%), Positives = 21/49 (42%)
Query: 16 PIAHFDPVHS-ELRNLVIQKVPVIRVFGNNIEGKKTCVFVHGVFPYLYI 63
P DP HS VP+IR +G G +HG PYL+I
Sbjct: 49 PPTSLDPKHSLSWPGKAFSTVPIIRFYGKLTSGHNILSHLHGALPYLFI 97
Score = 68 (29.0 bits), Expect = 3.9e-09, Sum P(2) = 3.9e-09
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYI 115
VP+IR +G G +HG PYL+I
Sbjct: 69 VPIIRFYGKLTSGHNILSHLHGALPYLFI 97
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 187 (70.9 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 43/169 (25%), Positives = 80/169 (47%)
Query: 80 RNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALN 139
+N I + PV R++GN+ +G C+ +HGV ++ + + + + + +
Sbjct: 81 KNRKILQAPVARMYGNDKQGNSVCLHIHGVNQISHLIQNDKTFLDKFIDLIEECYYTLYS 140
Query: 140 IALGYKDSVQH----VFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAV 195
++ K + + + I K +YGYH+ E FLKI Y P + KL +L +G V
Sbjct: 141 VSEKQKKFLMSTTPIILNYEIIYKKDIYGYHSTEEPFLKIYFYNPKMIKKLVGILESGVV 200
Query: 196 FNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLS 244
N F YE H+ + L+ D ++ G+ I+ R + +L +L+
Sbjct: 201 MNIEFVIYEGHLTHFLKLYSDLDIKGLREIKLLKYSLRKNENQALQQLT 249
Score = 40 (19.1 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 239 SLPKLSHCQLEADVKAESIV 258
S+ K+S C +E DV ++I+
Sbjct: 267 SMTKVSTCDVEIDVYYKNIL 286
Score = 40 (19.1 bits), Expect = 1.8e-09, Sum P(3) = 1.8e-09
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 305 SMQDLLDVKSGALYLKLKDLVSACSIFRM 333
S Q L+D G LYLK L A ++F++
Sbjct: 1788 SYQYLVD--KGRLYLKQGKLEEAQNLFQL 1814
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 169 (64.5 bits), Expect = 3.7e-09, P = 3.7e-09
Identities = 59/191 (30%), Positives = 95/191 (49%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYI---PFHHEPITETMLQQLAASIDKALNIALG 143
+P IR+FG EG VHG PY +I P E +++ L S+ + N +
Sbjct: 127 LPAIRLFGVTKEGNSVLCKVHGFLPYFFISCPPGFTEADCKSLKHDLNESMKMSSNQS-N 185
Query: 144 YKDSVQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGAV-FN---- 197
KD V I I KK + GY+ + + F++I L P +++ ++ +G F
Sbjct: 186 EKDIENIVVSIDIEKKKSIMGYNPNPLSDFIRITLILPKFVTRCREIFESGRHHFTIPGQ 245
Query: 198 --ERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAE 255
++Q YES+I + L+F ID + G S IE ++ SET P +S CQ+E D E
Sbjct: 246 PFRQYQTYESNILFALRFLIDKGITGCSWIELPANTYKL-SET--P-VSTCQIEVDTSLE 301
Query: 256 SIVVDMAANDS 266
+I+ ++ +DS
Sbjct: 302 TII-SLSDDDS 311
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 169 (64.5 bits), Expect = 3.8e-09, P = 3.8e-09
Identities = 52/183 (28%), Positives = 85/183 (46%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIAL---- 142
VPV+R FG EG C +HG PY Y P E M + + LN+A+
Sbjct: 122 VPVLRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGPEHM-----GDLQRELNLAISRDS 176
Query: 143 --GYKDSVQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNG----AV 195
G + + V + +C + M+GYH + FL+I + P ++ LL G +
Sbjct: 177 RGGRELTGPAVLAVELCSRESMFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRVAGL 236
Query: 196 FNERFQPYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAE 255
F PYE+++ + ++F +D ++ G + +E K+ + K + CQLEADV
Sbjct: 237 GTPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYALRLKE---KATQCQLEADVLWS 293
Query: 256 SIV 258
+V
Sbjct: 294 DVV 296
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 158 (60.7 bits), Expect = 6.3e-08, P = 6.3e-08
Identities = 70/283 (24%), Positives = 125/283 (44%)
Query: 85 QKVPVIRVFGNNVEGKKTCVFVHGVFPYLYI--PFHHEPITETMLQQLAASIDKALNIAL 142
++ P+IR++G + V + GV PYL++ P +P +T L+ + ++K
Sbjct: 108 EREPIIRMYGVTKDQHSVLVSIRGVVPYLFVRLPPQIQPNAQT-LKSIMDDLNKQGKFQR 166
Query: 143 GYKDSVQHVFHISICK--KFPMY-GYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNE- 198
K + + I + K Y G + T+LKI + P + L ++ G +
Sbjct: 167 NVK-TTNFIRKIEVVKGESIKYYKGKDYAQDTYLKIYTFIPPFIPALRGMIEKGYTIDGI 225
Query: 199 RFQP--YESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPK-LSHCQLEADVKAE 255
RF +ES+IP+ L++ ID ++ GM I+ + KF+ SL K S CQ+E DV +
Sbjct: 226 RFPAVTFESNIPFALRYMIDADIVGMGWIKLDKEKFKI---RSLDKHKSRCQIEIDVDCQ 282
Query: 256 SIVVDMAANDSDVATSGGITRYLSDV--LLNSMRAILLGQEPHLLMDPDVYSMQDLL-DV 312
+ V M A D A + + D+ L S ++ ++ V + D D+
Sbjct: 283 N-VHGMDAQDPQWADIAPLRIFSFDIECLAKSGGFPNASKDDPIIQIATVLKIHDQQEDI 341
Query: 313 KSGALYLKLKDLVSACSI--FRMRA-ILLGQEPHLL-MDPDVY 351
+ + C + F+ +LL E L +DPD++
Sbjct: 342 VRTVFTMDTCSNIPGCIVKSFKTETELLLEWEKFLQNVDPDIF 384
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 157 (60.3 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 53/189 (28%), Positives = 91/189 (48%)
Query: 74 IVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAAS 133
I+ S+ +N V VP+IR++ +G + VH FPY Y+ + E +++ L
Sbjct: 105 ILLSKDKNYV--SVPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLIK-LEML 161
Query: 134 IDKALNIALGYKDSVQHVFHISICK-KFPMYGYHADERTFLKILLYEPYHMSKLEDLLLN 192
+++ LN+ YK + + I I K + MY ++ FLKI + P + L+
Sbjct: 162 MNENLNLNSQYKIYEKKILKIEIVKTESLMYFKKNGKKDFLKITVLLPKMVPSLKKYF-E 220
Query: 193 GAVF--NERFQP--YESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQL 248
G V N+ YE+++P+IL++ ID+ + G S I N K K+S+C
Sbjct: 221 GIVHVNNKSIGGIVYEANLPFILRYIIDHKITGSSWI--NCKKGHYYIRNKNKKISNCTF 278
Query: 249 EADVKAESI 257
E D+ E +
Sbjct: 279 EIDISYEHV 287
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 157 (60.3 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 53/189 (28%), Positives = 91/189 (48%)
Query: 74 IVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAAS 133
I+ S+ +N V VP+IR++ +G + VH FPY Y+ + E +++ L
Sbjct: 105 ILLSKDKNYV--SVPIIRIYSLRKDGCSVLINVHNFFPYFYVEKPDDFDNEDLIK-LEML 161
Query: 134 IDKALNIALGYKDSVQHVFHISICK-KFPMYGYHADERTFLKILLYEPYHMSKLEDLLLN 192
+++ LN+ YK + + I I K + MY ++ FLKI + P + L+
Sbjct: 162 MNENLNLNSQYKIYEKKILKIEIVKTESLMYFKKNGKKDFLKITVLLPKMVPSLKKYF-E 220
Query: 193 GAVF--NERFQP--YESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQL 248
G V N+ YE+++P+IL++ ID+ + G S I N K K+S+C
Sbjct: 221 GIVHVNNKSIGGIVYEANLPFILRYIIDHKITGSSWI--NCKKGHYYIRNKNKKISNCTF 278
Query: 249 EADVKAESI 257
E D+ E +
Sbjct: 279 EIDISYEHV 287
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 156 (60.0 bits), Expect = 1.0e-07, P = 1.0e-07
Identities = 57/198 (28%), Positives = 93/198 (46%)
Query: 89 VIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSV 148
V+R FG +G V G Y+Y+P P + +D ++ G DSV
Sbjct: 132 VVRFFGVTEQGHSVLCSVTGFKHYMYVP---APANFDARTDVPVLVDYLNDMFDGVVDSV 188
Query: 149 QHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGAVF-NER-FQ---- 201
+ +C+K ++GY D++ FLK+L+ +PY ++K+ G + N+ FQ
Sbjct: 189 E------VCQKQSIWGYSGDQKLQFLKVLVADPYGLNKIRTAFEKGYITPNDTWFQGGTT 242
Query: 202 PYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDM 261
Y++ I Y L+ ID + GMS I K+ + K+S CQLE + + ++
Sbjct: 243 TYDN-IAYTLRLMIDCGIVGMSWITLPKGKYAMIPKNK--KISTCQLEVSINYKDLISRP 299
Query: 262 AANDSDVATSGGITRYLS 279
A DSD + S + R LS
Sbjct: 300 A--DSDWSHSAPL-RILS 314
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 151 (58.2 bits), Expect = 3.5e-07, P = 3.5e-07
Identities = 50/182 (27%), Positives = 85/182 (46%)
Query: 87 VPVIRVFGNNVEGKKTCVFVHGVFPYLYI--PFHHEPITETMLQQLAASIDKALNIALGY 144
VP IR+FG G V V G PY Y+ P P ML++ +D N +
Sbjct: 113 VPSIRLFGVTDNGNSILVHVVGFLPYFYVKAPVGFRP---EMLERFTQDLDATCNGGV-- 167
Query: 145 KDSVQHVFHISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGAV-FNERFQ- 201
+ H I K +YG+ +E++ F+KI P +S+ ++ G F E F
Sbjct: 168 ------IDHCIIEMKENLYGFQGNEKSPFIKIFTTNPRILSRARNVFERGEFNFEELFPV 221
Query: 202 -----PYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAES 256
+ES+ Y+L+F ID ++ GM+ I K++ + ++S+CQ+EA + +
Sbjct: 222 GVGVTTFESNTQYLLRFMIDCDVVGMNWIHLPASKYQFRYQN---RVSNCQIEAWINYKD 278
Query: 257 IV 258
++
Sbjct: 279 LI 280
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 149 (57.5 bits), Expect = 6.0e-07, P = 6.0e-07
Identities = 54/197 (27%), Positives = 95/197 (48%)
Query: 67 HEPITETIVHSELRNLVIQKVPVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETM 126
+EP I+ + +N + VP+IR++ G V VH FPY Y+ + + M
Sbjct: 103 YEPYK--IILGKEKNFI--SVPIIRIYSITNCGYSVVVNVHNFFPYFYVEKPNGFNNDDM 158
Query: 127 LQQLAASIDKALNIALGYKDSVQHVFHISICK-KFPMYGYHADERTFLKILLYEPYHMSK 185
++ L + +++ L++ +K + I K + MY + + FLKI + P +
Sbjct: 159 IK-LESMLNETLSLNNQFKMYENKILKIETVKTESIMYFKKSGKTDFLKITVLLPKMVPS 217
Query: 186 LEDLLLNGAVFNER-FQP--YESHIPYILQFCIDYNLYGMSNI--EFNMVKFRSDSETSL 240
L+ +G N + F YE+++P+IL++ ID + G S I E N RS ++ S
Sbjct: 218 LKKFFESGINVNSKHFGGIVYEANLPFILRYIIDKKITGSSWIKCEKNSYIIRSKNKQS- 276
Query: 241 PKLSHCQLEADVKAESI 257
S+C E D+ E+I
Sbjct: 277 ---SNCTFEIDIHYENI 290
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 143 (55.4 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 49/184 (26%), Positives = 83/184 (45%)
Query: 89 VIRVFGNNVEGKKTCVFVHGVFPYLYI--PFHHEPITETMLQQLAASIDKALNIALGYKD 146
++R+FG EG C VHG PY YI P P + Q +++ + + +
Sbjct: 131 ILRIFGVTREGHSVCCQVHGFEPYFYISCPMGMGPDDISRFHQ---TLEGRMKDSNRNSN 187
Query: 147 SVQHVFHISICKKFPMYGYHADE-RTFLKILLYEPYHMSKLEDLLLNGAVF----NERFQ 201
+ V I + +K + Y + + FLKI++ P ++ +L G ++ F
Sbjct: 188 VPRFVKRIELVQKQTIMHYQPQQSQPFLKIVVALPTMVASCRGILERGITIEGLGSKSFL 247
Query: 202 PYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDM 261
YES+I + L+F ID N+ G + IE K+ + +S+CQLE D +V
Sbjct: 248 TYESNILFALRFMIDCNIVGGNWIEVPAGKYMKAARI----MSYCQLELDCLYSDLVSHA 303
Query: 262 AAND 265
A +
Sbjct: 304 AEGE 307
>GENEDB_PFALCIPARUM|PF10_0362 [details] [associations]
symbol:PF10_0362 "DNA polymerase zeta catalytic
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0016035
"zeta DNA polymerase complex" evidence=ISS] InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR008973 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562
SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 144 (55.7 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 53/210 (25%), Positives = 98/210 (46%)
Query: 44 NIEGKKTCVFVHGVFPYLYIPFHHEPITE-TIVHSELRNLVIQKVPVIRVFGNNVEGKKT 102
N+ K F+ + YI + +PI + ++ I V +I++ G ++ G++
Sbjct: 2 NLAEKPKAFFICKFLFFYYI--YKKPILPFDSLKCKISGKEIPYVCIIQILGLSLLGQRV 59
Query: 103 CVFVHGV-FPYL-------------YIPFHHEPITETMLQ-QLAASIDKALNIALGYKDS 147
C+++H + + YL Y F H PI++ L+ +L + +++ A +
Sbjct: 60 CLYIHDLMYVYLIVYFILFYCFISFYFIFFHSPISDDKLEIELCSFLEEEYGKARKDPSN 119
Query: 148 VQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNER-FQPYESH 206
V++I K+ +YGY+ + FLKI P ++ LL +F +R + YE H
Sbjct: 120 NVCVYNIERVKRKGIYGYNEECDDFLKISFLYPNTINYFASLLKK-KLFKKRIWDLYEVH 178
Query: 207 IPYILQFCIDYNLYGMSNIEFNM-VKFRSD 235
I Y+L F N+YG S I + + FR +
Sbjct: 179 INYMLHFLCMKNIYGCSEIYIDKNIYFRKE 208
>UNIPROTKB|Q8IJ38 [details] [associations]
symbol:PF10_0362 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR008973 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562 SUPFAM:SSF53098
EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 144 (55.7 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 53/210 (25%), Positives = 98/210 (46%)
Query: 44 NIEGKKTCVFVHGVFPYLYIPFHHEPITE-TIVHSELRNLVIQKVPVIRVFGNNVEGKKT 102
N+ K F+ + YI + +PI + ++ I V +I++ G ++ G++
Sbjct: 2 NLAEKPKAFFICKFLFFYYI--YKKPILPFDSLKCKISGKEIPYVCIIQILGLSLLGQRV 59
Query: 103 CVFVHGV-FPYL-------------YIPFHHEPITETMLQ-QLAASIDKALNIALGYKDS 147
C+++H + + YL Y F H PI++ L+ +L + +++ A +
Sbjct: 60 CLYIHDLMYVYLIVYFILFYCFISFYFIFFHSPISDDKLEIELCSFLEEEYGKARKDPSN 119
Query: 148 VQHVFHISICKKFPMYGYHADERTFLKILLYEPYHMSKLEDLLLNGAVFNER-FQPYESH 206
V++I K+ +YGY+ + FLKI P ++ LL +F +R + YE H
Sbjct: 120 NVCVYNIERVKRKGIYGYNEECDDFLKISFLYPNTINYFASLLKK-KLFKKRIWDLYEVH 178
Query: 207 IPYILQFCIDYNLYGMSNIEFNM-VKFRSD 235
I Y+L F N+YG S I + + FR +
Sbjct: 179 INYMLHFLCMKNIYGCSEIYIDKNIYFRKE 208
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 132 (51.5 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 71/271 (26%), Positives = 120/271 (44%)
Query: 88 PVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDS 147
P IR+FG G+ + V G YLYI P+ T ++ L +G
Sbjct: 120 PAIRLFGVTEAGQSVLLHVTGFQHYLYIA---APVGFT--KEDCDPYRAFLESKIGQFPP 174
Query: 148 VQHVFHISICKKFPMYGYHADERTF-LKILLYEPYHMSKLEDLLLNGA-VFNER--FQPY 203
V + + I + +YG+ +++++ LKI + EP H+SKL L A N + +
Sbjct: 175 V--IQSVQITMRENIYGFQGNKKSYYLKITVTEPRHISKLRSALETKAQTVNYKGLWTNA 232
Query: 204 ES------HIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESI 257
+ +I Y+L+F ID ++ GMS +E K+ + K+S+CQLEA + S+
Sbjct: 233 DGGILTFDNIQYLLRFMIDTDIQGMSWVEAPAGKYELIAPQD--KVSNCQLEARIDYRSL 290
Query: 258 VVDMAANDSDVATSGGITRYLS-DVLLNSMRAILLGQEPHLLMDPDVYSMQDLLDVKSGA 316
+ A D A + R LS D+ + I EP+ DP + +
Sbjct: 291 ISH--APVGDWAKMAPL-RILSFDIECAGRKGIF--PEPN--HDPVIQIANVVTRYGESK 343
Query: 317 LYLKLKDLVSACSIFRMRAIL-LGQEPHLLM 346
+++ +++ CS+ IL QE +LM
Sbjct: 344 PFIRNVFVMNTCSLIVNTQILEFQQEEKMLM 374
Score = 55 (24.4 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 16 PIAHFDPVHSELRNLVIQKV----------PVIRVFGNNIEGKKTCVFVHGVFPYLYI 63
P+ FDP N+ Q++ P IR+FG G+ + V G YLYI
Sbjct: 93 PLGEFDPTKD---NICFQQIDAEEGTTMGKPAIRLFGVTEAGQSVLLHVTGFQHYLYI 147
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 132 (51.5 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 71/271 (26%), Positives = 120/271 (44%)
Query: 88 PVIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDS 147
P IR+FG G+ + V G YLYI P+ T ++ L +G
Sbjct: 120 PAIRLFGVTEAGQSVLLHVTGFQHYLYIA---APVGFT--KEDCDPYRAFLESKIGQFPP 174
Query: 148 VQHVFHISICKKFPMYGYHADERTF-LKILLYEPYHMSKLEDLLLNGA-VFNER--FQPY 203
V + + I + +YG+ +++++ LKI + EP H+SKL L A N + +
Sbjct: 175 V--IQSVQITMRENIYGFQGNKKSYYLKITVTEPRHISKLRSALETKAQTVNYKGLWTNA 232
Query: 204 ES------HIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESI 257
+ +I Y+L+F ID ++ GMS +E K+ + K+S+CQLEA + S+
Sbjct: 233 DGGILTFDNIQYLLRFMIDTDIQGMSWVEAPAGKYELIAPQD--KVSNCQLEARIDYRSL 290
Query: 258 VVDMAANDSDVATSGGITRYLS-DVLLNSMRAILLGQEPHLLMDPDVYSMQDLLDVKSGA 316
+ A D A + R LS D+ + I EP+ DP + +
Sbjct: 291 ISH--APVGDWAKMAPL-RILSFDIECAGRKGIF--PEPN--HDPVIQIANVVTRYGESK 343
Query: 317 LYLKLKDLVSACSIFRMRAIL-LGQEPHLLM 346
+++ +++ CS+ IL QE +LM
Sbjct: 344 PFIRNVFVMNTCSLIVNTQILEFQQEEKMLM 374
Score = 55 (24.4 bits), Expect = 4.8e-06, Sum P(2) = 4.8e-06
Identities = 18/58 (31%), Positives = 25/58 (43%)
Query: 16 PIAHFDPVHSELRNLVIQKV----------PVIRVFGNNIEGKKTCVFVHGVFPYLYI 63
P+ FDP N+ Q++ P IR+FG G+ + V G YLYI
Sbjct: 93 PLGEFDPTKD---NICFQQIDAEEGTTMGKPAIRLFGVTEAGQSVLLHVTGFQHYLYI 147
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 127 (49.8 bits), Expect = 0.00015, P = 0.00015
Identities = 49/184 (26%), Positives = 79/184 (42%)
Query: 89 VIRVFGNNVEGKKTCVFVHGVFPYLYIPFHHEPITETMLQQLAASIDKALNIALGYKDSV 148
V+R FG EG V G YLY+P P + Q I+K ++ ++
Sbjct: 136 VVRFFGVTSEGHSVLCNVTGFKNYLYVP---APNSSDANDQ--EQINKFVHYL---NETF 187
Query: 149 QHVFH-ISICKKFPMYGYHADERT-FLKILLYEPYHMSKLEDLLLNGAV-FNERFQ---- 201
H I + K ++GY D + F KI + P+ ++KL G + FN F
Sbjct: 188 DHAIDSIEVVSKQSIWGYSGDTKLPFWKIYVTYPHMVNKLRTAFERGHLSFNSWFSNGTT 247
Query: 202 PYESHIPYILQFCIDYNLYGMSNIEFNMVKFRSDSETSLPKLSHCQLEADVKAESIVVDM 261
Y++ I Y L+ +D + GMS I K+ + ++S CQLE + +++
Sbjct: 248 TYDN-IAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNN--RVSSCQLEVSINYRNLIAHP 304
Query: 262 AAND 265
A D
Sbjct: 305 AEGD 308
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.325 0.140 0.418 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 387 387 0.00093 117 3 11 22 0.47 33
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 45
No. of states in DFA: 593 (63 KB)
Total size of DFA: 229 KB (2123 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.80u 0.08s 33.88t Elapsed: 00:00:25
Total cpu time: 33.81u 0.08s 33.89t Elapsed: 00:00:25
Start: Thu Aug 15 12:05:41 2013 End: Thu Aug 15 12:06:06 2013