BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy592
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1I7X|B Chain B, Beta-CateninE-Cadherin Complex
pdb|1I7X|D Chain D, Beta-CateninE-Cadherin Complex
Length = 151
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 220 RREAHIKYP--GPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGG-PHPEMNNKIPY 276
RR +K P PDDD R+N+ YD+EGGGE+D FD++ L + P N+ P
Sbjct: 1 RRRTVVKEPLLPPDDDTRDNVYYYDEEGGGEEDQD-FDLSQLHRGLDARPEVTRNDVAPT 59
Query: 277 GLG-----PMPMGVEPNVGIFIEEHKK 298
+ P P + +G FI+E+ K
Sbjct: 60 LMSVPQYRPRPANPD-EIGNFIDENLK 85
>pdb|1I7W|B Chain B, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
pdb|1I7W|D Chain D, Beta-CateninPHOSPHORYLATED E-Cadherin Complex
Length = 151
Score = 38.1 bits (87), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 10/87 (11%)
Query: 220 RREAHIKYP--GPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGG-PHPEMNNKIPY 276
RR +K P PDDD R+N+ YD+EGGGE+D FD++ L + P N+ P
Sbjct: 1 RRRTVVKEPLLPPDDDTRDNVYYYDEEGGGEEDQD-FDLSQLHRGLDARPEVTRNDVAPT 59
Query: 277 GLG-----PMPMGVEPNVGIFIEEHKK 298
+ P P + +G FI+E+ K
Sbjct: 60 LMSVPQYRPRPANPD-EIGNFIDENLK 85
>pdb|2JD4|A Chain A, Mouse Laminin Alpha1 Chain, Domains Lg4-5
pdb|2JD4|B Chain B, Mouse Laminin Alpha1 Chain, Domains Lg4-5
Length = 383
Score = 35.8 bits (81), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 40/95 (42%), Gaps = 30/95 (31%)
Query: 100 QLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDS 159
Q+QL RT G ++ ++ Q+ +YA L++++ +L F ++L +T L
Sbjct: 46 QVQLSIRTFASSGLIYYVAHQNQMDYATLQLQEGRLHFMFDLGKGRTKVSHPAL------ 99
Query: 160 KLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVKT 194
++DG+WH VKT
Sbjct: 100 ------------------------LSDGKWHTVKT 110
>pdb|3POY|A Chain A, Crystal Structure Of The Alpha-Neurexin-1 Ectodomain, Lns
2-6
Length = 1019
Score = 35.8 bits (81), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 48 HGVCVGSMHTAKCQCL-PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFR 106
+G+C + C C G+ G C + +++ ++K L + L+FR
Sbjct: 405 NGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFR 464
Query: 107 TREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFR-Y 165
++ +G L + + + + LE+ +++ NL+ ++ I N+ K + F Y
Sbjct: 465 SQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIR-----INCNSSKGPETLFAGY 519
Query: 166 NLNNLKTDEKDIWLNAVAVNDGQWH---FVKTGSALFVTL 202
NL ND +WH V+ G +L +T+
Sbjct: 520 NL-----------------NDNEWHTVRVVRRGKSLKLTV 542
>pdb|3R05|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
pdb|3R05|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), With
Splice Insert Ss3
Length = 1254
Score = 35.8 bits (81), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 27/160 (16%)
Query: 48 HGVCVGSMHTAKCQCL-PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFR 106
+G+C + C C G+ G C + +++ ++K L + L+FR
Sbjct: 630 NGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFR 689
Query: 107 TREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFR-Y 165
++ +G L + + + + LE+ +++ NL+ ++ I N+ K + F Y
Sbjct: 690 SQRAYGILMATTSRDSADTLRLELDAGRVKLTVNLDCIR-----INCNSSKGPETLFAGY 744
Query: 166 NLNNLKTDEKDIWLNAVAVNDGQWH---FVKTGSALFVTL 202
NL ND +WH V+ G +L +T+
Sbjct: 745 NL-----------------NDNEWHTVRVVRRGKSLKLTV 767
>pdb|3QCW|A Chain A, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
pdb|3QCW|B Chain B, Structure Of Neurexin 1 Alpha (Domains Lns1-Lns6), No
Splice Inserts
Length = 1245
Score = 32.7 bits (73), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 18/95 (18%), Positives = 41/95 (43%), Gaps = 1/95 (1%)
Query: 48 HGVCVGSMHTAKCQCL-PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFR 106
+G+C + C C G+ G C + +++ ++K L + L+FR
Sbjct: 630 NGMCRDGWNRYVCDCSGTGYLGRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFR 689
Query: 107 TREEFGELFRLSDQHNREYAILEIKDSKLRFRYNL 141
++ +G L + + + + LE+ +++ NL
Sbjct: 690 SQRAYGILMATTSRDSADTLRLELDAGRVKLTVNL 724
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 45/107 (42%), Gaps = 32/107 (29%)
Query: 89 ALSFEPDKYTTQL--QLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKT 146
A++F+ K +L +L+ RT E G LF ++ ++ ++A +++++ F Y+L + T
Sbjct: 47 AIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDT 106
Query: 147 DEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ +NDGQWH +K
Sbjct: 107 ST------------------------------MIPTKINDGQWHKIK 123
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 31.2 bits (69), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 23/107 (21%), Positives = 44/107 (41%), Gaps = 32/107 (29%)
Query: 89 ALSFEPDKYTTQL--QLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKT 146
A++F+ K +L +L+ RT E G LF ++ ++ +A +++++ F Y+L + T
Sbjct: 47 AIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINHAAFATVQLRNGFPYFSYDLGSGDT 106
Query: 147 DEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ +NDGQWH +K
Sbjct: 107 ST------------------------------MIPTKINDGQWHKIK 123
>pdb|1EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
pdb|1EPG|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPH|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPI|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|1EPJ|A Chain A, Three-Dimensional Nuclear Magnetic Resonance Structures
Of Mouse Epidermal Growth Factor In Acidic And
Physiological Ph Solutions
pdb|3EGF|A Chain A, Solution Structure Of Murine Epidermal Growth Factor
Determined By Nmr Spectroscopy And Refined By Energy
Minimization With Restraints
Length = 53
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 12/53 (22%)
Query: 24 NSVPGCPAT-EAVCNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGCVT 73
NS PGCP++ + C GVC + S+ + C C+ G+SG C T
Sbjct: 1 NSYPGCPSSYDGYC---------LNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>pdb|3F6U|L Chain L, Crystal Structure Of Human Activated Protein C (Apc)
Complexed With Ppack
Length = 98
Score = 30.0 bits (66), Expect = 2.1, Method: Composition-based stats.
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
HG C+ + + C C GW G C
Sbjct: 18 HGTCIDGIGSFSCDCRSGWEGRFC 41
>pdb|1GK5|A Chain A, Solution Structure The MegfTGFALPHA44-50 Chimeric Growth
Factor
Length = 49
Score = 29.6 bits (65), Expect = 2.4, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 12/51 (23%)
Query: 24 NSVPGCPAT-EAVCNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGC 71
NS PGCP++ + C GVC + S+ + C C+ G+SG C
Sbjct: 1 NSYPGCPSSYDGYC---------LNGGVCMHIESLDSYTCNCVIGYSGDRC 42
>pdb|1G1T|A Chain A, Crystal Structure Of E-Selectin LectinEGF DOMAINS
Complexed With Slex
Length = 157
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
HG CV +++ C+C PG+SG C
Sbjct: 130 HGECVETINNYTCKCDPGFSGLKC 153
>pdb|1ESL|A Chain A, Insight Into E-Selectin(Slash)ligand Interaction From The
Crystal Structure And Mutagenesis Of The Lec(Slash)egf
Domains
Length = 162
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
HG CV +++ C+C PG+SG C
Sbjct: 130 HGECVETINNYTCKCDPGFSGLKC 153
>pdb|1HLC|A Chain A, X-Ray Crystal Structure Of The Human Dimeric S-Lac Lectin,
L-14-Ii, In Complex With Lactose At 2.9 Angstroms
Resolution
pdb|1HLC|B Chain B, X-Ray Crystal Structure Of The Human Dimeric S-Lac Lectin,
L-14-Ii, In Complex With Lactose At 2.9 Angstroms
Resolution
Length = 129
Score = 27.7 bits (60), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 54 SMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQL 101
S T C L G S G + F P S +K+ ++FE DK+ +L
Sbjct: 48 SESTIVCNSLDG-SNWGQEQREDHLCFSPGSEVKFTVTFESDKFKVKL 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.138 0.431
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,365,851
Number of Sequences: 62578
Number of extensions: 460284
Number of successful extensions: 844
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 805
Number of HSP's gapped (non-prelim): 48
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 52 (24.6 bits)