RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy592
(339 letters)
>1i7w_B E-cadherin, epithelial-cadherin; cell adhesion, beta-catenin,
protein-protein complex, extended interface, armadillo
repeat, phosphoserin; HET: SEP; 2.00A {Mus musculus}
SCOP: j.71.1.1 PDB: 1i7x_B 3ifq_C*
Length = 151
Score = 123 bits (310), Expect = 8e-35
Identities = 51/123 (41%), Positives = 67/123 (54%), Gaps = 8/123 (6%)
Query: 220 RREAHIKYP--GPDDDVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYG 277
RR +K P PDDD R+N+ YD+EGGGE+D FD++ L + N +
Sbjct: 1 RRRTVVKEPLLPPDDDTRDNVYYYDEEGGGEED-QDFDLSQLHRGLDARPEVTRNDVAPT 59
Query: 278 LGPMPMGVEP-----NVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGSTAGSLSSLAS 332
L +P +G FI+E+ K AD+DP APP+D L + YEG GS A SLSSL S
Sbjct: 60 LMSVPQYRPRPANPDEIGNFIDENLKAADSDPTAPPYDSLLVFDYEGSGSEAASLSSLNS 119
Query: 333 GSS 335
S
Sbjct: 120 SES 122
>1q55_A EP-cadherin, C-cadherin; trans interaction, desmosome, junction,
adhesion, structural protein; HET: NAG NDG; 30.00A {Mus
musculus} SCOP: i.20.1.1 PDB: 1q5a_A* 1q5b_A* 1q5c_A*
Length = 880
Score = 104 bits (260), Expect = 1e-24
Identities = 54/168 (32%), Positives = 78/168 (46%), Gaps = 10/168 (5%)
Query: 173 DEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDD 232
+ K I V + + LLI + +L+ + R++ P+D
Sbjct: 688 EGKAIKCQEKLVGGFDLPIILVILGSVLALLI----LFLLLLLFLKRKKVVKEPLLLPED 743
Query: 233 DVRENIINYDDEGGGEDDMTAFDITPLQIPIGGPHPEMNNKIPYGLGPMP-----MGVEP 287
D R+NI Y +EGGGE+D +D++ L + M N + L P P
Sbjct: 744 DTRDNIFYYGEEGGGEEDQD-YDLSQLHRGLDSRPDIMRNDVVPTLMPAPHYRPRPSNPD 802
Query: 288 NVGIFIEEHKKRADADPNAPPFDDLRNYAYEGGGSTAGSLSSLASGSS 335
+G FI+E+ AD DP APP+D L + YEG GS A SLSSL S +S
Sbjct: 803 EIGNFIDENLDAADNDPTAPPYDSLLVFDYEGSGSEAASLSSLNSSNS 850
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 99.1 bits (246), Expect = 6e-23
Identities = 39/188 (20%), Positives = 63/188 (33%), Gaps = 40/188 (21%)
Query: 13 LYDLANPGLHKNSV--PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQC-LPGWSGT 69
L DL + L N GC C S + GVC+ C C + +SG
Sbjct: 995 LPDLISDALFCNGQIERGCEGPSTTCQEDSCSN----QGVCLQQWDGFSCDCSMTSFSGP 1050
Query: 70 GCVTPTSPVTFKPQ---SYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR-EY 125
C P + F K+ + P +L + F T ++ L R+ +Y
Sbjct: 1051 LCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDY 1110
Query: 126 AILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVN 185
L I K+ ++N+ TD+ I + +N
Sbjct: 1111 LELHIHQGKIGVKFNVG-----------------------------TDDIAIEESNAIIN 1141
Query: 186 DGQWHFVK 193
DG++H V+
Sbjct: 1142 DGKYHVVR 1149
Score = 86.8 bits (214), Expect = 7e-19
Identities = 27/186 (14%), Positives = 61/186 (32%), Gaps = 39/186 (20%)
Query: 13 LYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPE----HGVCVGSMHTAKCQC-LPGWS 67
D+ +++ P+ C+ + C +G+C + C C G+
Sbjct: 595 SKDIRQMAEVQSTAGVKPS----CSRETAKPCLSNPCKNNGMCRDGWNRYVCDCSGTGYL 650
Query: 68 GTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAI 127
G C + +++ ++K L + L+FR++ +G L + + + +
Sbjct: 651 GRSCEREATVLSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLR 710
Query: 128 LEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDG 187
LE+ +++ NL + +ND
Sbjct: 711 LELDAGRVKLTVNLGK------------------------------GPETLFAGYNLNDN 740
Query: 188 QWHFVK 193
+WH V+
Sbjct: 741 EWHTVR 746
Score = 77.6 bits (190), Expect = 8e-16
Identities = 37/189 (19%), Positives = 53/189 (28%), Gaps = 38/189 (20%)
Query: 13 LYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYP----EHGVCVGSMHTAKCQC-LPGWS 67
L + G K P + + GVC A C C G+
Sbjct: 163 LALPVDSGEVKLD-DEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQAVCDCSRTGFR 221
Query: 68 GTGCVTPTSP--VTFKPQSYIKYALSFEP-DKYTTQLQLKFRTREEFGELFRLSDQHNRE 124
G C TFK Y Y LS P + ++ L F+T + G + +
Sbjct: 222 GKDCSQGKEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSAD-- 279
Query: 125 YAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAV 184
Y L +K+ + NL + E +
Sbjct: 280 YVNLALKNGAVSLVINLGS---------------------------GAFEALVEPVNGKF 312
Query: 185 NDGQWHFVK 193
ND WH VK
Sbjct: 313 NDNAWHDVK 321
Score = 54.5 bits (130), Expect = 3e-08
Identities = 21/152 (13%), Positives = 40/152 (26%), Gaps = 18/152 (11%)
Query: 43 HCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFK-PQSYIKYALSFEPDKYTTQL 101
+ + + + G C + +L K T +
Sbjct: 387 NNDVRLELSRLAKQGDPKMKIHGVVAFKCENVATLDPITFETPESFISLPKWNAKKTGSI 446
Query: 102 QLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKL 161
FRT E G + + + + K+ F + + D L
Sbjct: 447 SFDFRTTEPNGLILFSHGKPRHQKDAKHPQMIKVDF-------------FAI-EMLDGHL 492
Query: 162 RFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
++ + I VNDG+W+ V
Sbjct: 493 YLLLDMGS---GTIKIKALQKKVNDGEWYHVD 521
Score = 50.6 bits (120), Expect = 4e-07
Identities = 16/118 (13%), Positives = 37/118 (31%), Gaps = 32/118 (27%)
Query: 78 VTF--KPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKL 135
+ F + ++ +++ + +TR G + D+ ++ L +
Sbjct: 1 LEFPGAEGQWTRFPK--WNACCESEMSFQLKTRSARGLVLYFDDEGFCDFLELIL----- 53
Query: 136 RFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ +L+ +++ E L VNDG WH V+
Sbjct: 54 --------------------TRGGRLQLSFSIFC---AEPATLLTDTPVNDGAWHNVR 88
Score = 49.1 bits (116), Expect = 1e-06
Identities = 24/152 (15%), Positives = 48/152 (31%), Gaps = 34/152 (22%)
Query: 43 HCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF-KPQSYIKYALSFEPDKYTTQL 101
+ + C+ + + PVTF SY+ A + + L
Sbjct: 807 FNGMAYIDLCKNGDIDYCELNARFGFRNIIA--DPVTFKTKSSYVALA-TLQAYTSMH-L 862
Query: 102 QLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKL 161
+F+T G + S N ++ ++E+ L + ++L N + +
Sbjct: 863 FFQFKTTSLDGLILYNSGDGN-DFIVVELVKGYLHYVFDLGN-------------GANLI 908
Query: 162 RFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ + +ND QWH V
Sbjct: 909 KGS---------------SNKPLNDNQWHNVM 925
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 93.1 bits (231), Expect = 2e-21
Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 40/188 (21%)
Query: 13 LYDLANPGLHKNSV--PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQC-LPGWSGT 69
L DL + L N GC C S + GVC+ C C + +SG
Sbjct: 163 LPDLISDALFCNGQIERGCEGPSTTCQEDSCSN----QGVCLQQWDGFSCDCSMTSFSGP 218
Query: 70 GCVTPTSPVTFKP---QSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR-EY 125
C P + F Q K+ + P +L + F T ++ L R+ +Y
Sbjct: 219 LCNDPGTTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDY 278
Query: 126 AILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVN 185
L I K+ ++N+ TD+ I + +N
Sbjct: 279 LELHIHQGKIGVKFNVG-----------------------------TDDIAIEESNAIIN 309
Query: 186 DGQWHFVK 193
DG++H V+
Sbjct: 310 DGKYHVVR 317
Score = 49.6 bits (118), Expect = 7e-07
Identities = 22/118 (18%), Positives = 38/118 (32%), Gaps = 32/118 (27%)
Query: 77 PVTFK-PQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKL 135
PVTFK SY+ A + L +F+T G + + ++ ++E+ L
Sbjct: 7 PVTFKTKSSYVALATL--QAYTSMHLFFQFKTTSLDGLIL-YNSGDGNDFIVVELVKGYL 63
Query: 136 RFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ ++L N + +ND QWH V
Sbjct: 64 HYVFDLGN----------------------------GANLIKGSSNKPLNDNQWHNVM 93
>2wjs_A Laminin subunit alpha-2; integrin, secreted, coiled coil,
glycoprotein, laminin EGF-like domain, extracellular
matrix, laminin G-like domain; HET: NAG; 2.80A {Mus
musculus}
Length = 608
Score = 80.5 bits (198), Expect = 8e-17
Identities = 18/150 (12%), Positives = 45/150 (30%), Gaps = 30/150 (20%)
Query: 44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQL 103
+ + + + + C + F + Y + + +
Sbjct: 172 YFDNKPIGLWNFREKEGDCKGCTVSPQVEDSEGTIQFDGEGYALVSRPIRWYPNISTVMF 231
Query: 104 KFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRF 163
KFRT L L+ + +++ +E+ D ++ Y+L + T
Sbjct: 232 KFRTFSSSALLMYLATRDLKDFMSVELSDGHVKVSYDLGSGMT----------------- 274
Query: 164 RYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
++ +++ NDG+W
Sbjct: 275 -----SVVSNQN--------HNDGKWKAFT 291
Score = 62.8 bits (152), Expect = 4e-11
Identities = 21/157 (13%), Positives = 41/157 (26%), Gaps = 40/157 (25%)
Query: 60 CQCLPGWSGTGCV---TPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFR 116
P + G V+F +++ A T++ L F TR E G +
Sbjct: 369 ILSSPDYVGVTKGCSLENVYTVSFPKPGFVELA--AVSIDVGTEINLSFSTRNESGIIL- 425
Query: 117 LSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKD 176
L + Y + + +L + + I +
Sbjct: 426 LGSGGGQAYYAIFLNKGRLEVHLSSGTRTMRKIVIKPEPNR------------------- 466
Query: 177 IWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLV 213
+DG+ H V + + V +
Sbjct: 467 -------FHDGREH--------SVHVERTRGIFTVQI 488
Score = 57.0 bits (137), Expect = 3e-09
Identities = 12/117 (10%), Positives = 34/117 (29%), Gaps = 30/117 (25%)
Query: 77 PVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLR 136
V+ Y + Y + + +T LF L ++ +E++ K+
Sbjct: 12 SVSSGGDCVRTYRPEIKKGSYNN-IVVHVKTAVADNLLFYLGSAKFIDFLAIEMRKGKVS 70
Query: 137 FRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
F +++ + + + ++D W+ ++
Sbjct: 71 FLWDVGS-----------------------------GVGRVEYPDLTIDDSYWYRIE 98
>2r1d_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 2.60A {Rattus norvegicus} SCOP: b.29.1.4 PDB:
3biw_E*
Length = 226
Score = 73.2 bits (179), Expect = 3e-15
Identities = 26/160 (16%), Positives = 47/160 (29%), Gaps = 33/160 (20%)
Query: 38 AHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF-KPQSYIKY--ALSFEP 94
S + H H+ + + F K I Y + P
Sbjct: 1 GSSLGAHHIHHFHGSSKHHSVPIAIYRSPASLRGGHAGTTYIFSKGGGQITYKWPPNDRP 60
Query: 95 DKYTTQLQLKFRTREEFGELFRLSDQHNR-EYAILEIKDSKLRFRYNLNNLKTDEKDIWL 153
+L + F T ++ L R+ +Y L I K+ ++N+
Sbjct: 61 STRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIHQGKIGVKFNVG----------- 109
Query: 154 NAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
TD+ I + +NDG++H V+
Sbjct: 110 ------------------TDDIAIEESNAIINDGKYHVVR 131
>2r16_A Neurexin-1-alpha; beta-sandwich, cell adhesion, splicing; 1.04A
{Bos taurus}
Length = 182
Score = 68.7 bits (168), Expect = 4e-14
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 30/116 (25%)
Query: 78 VTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRF 137
+++ ++K L + L+FR++ +G L + + + + LE+ +++
Sbjct: 8 LSYDGSMFMKIQLPVVMHTEAEDVSLRFRSQRAYGILMATTSRDSADTLRLELDAGRVKL 67
Query: 138 RYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
NL L +ND +WH V+
Sbjct: 68 TVNLGKGPE----------------------TLFAGYN--------LNDNEWHTVR 93
>3bod_A Neurexin-1-alpha; neurexin1D, LNS6, alternative splicing, calcium,
cell adhesion, EGF-like domain, glycoprotein, membrane,
metal- binding; 1.70A {Mus musculus} PDB: 2vh8_C 2xb6_C*
2wqz_C* 1c4r_A 3bop_A 3mw4_A*
Length = 178
Score = 67.2 bits (164), Expect = 1e-13
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 32/122 (26%)
Query: 75 TSPVTFKPQSYIKY--ALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNR-EYAILEIK 131
++ + K I Y + P +L + F T ++ L R+ +Y L I
Sbjct: 5 STYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIH 64
Query: 132 DSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHF 191
K+ ++N+ TD+ I + +NDG++H
Sbjct: 65 QGKIGVKFNVG-----------------------------TDDIAIEESNAIINDGKYHV 95
Query: 192 VK 193
V+
Sbjct: 96 VR 97
>2jd4_A Laminin subunit alpha-1; basement membrane protein, metal binding
protein; 1.9A {Mus musculus}
Length = 383
Score = 69.2 bits (169), Expect = 3e-13
Identities = 26/138 (18%), Positives = 49/138 (35%), Gaps = 38/138 (27%)
Query: 64 PGWSGTGCVTPTSP--------VTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELF 115
P C T+P S++ L + Q+QL RT G ++
Sbjct: 2 PLAQPELCAVDTAPGYVAGAHQFGLSQNSHLVLPLQQSDVRKRLQVQLSIRTFASSGLIY 61
Query: 116 RLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEK 175
++ Q+ +YA L++++ +L F ++L +T +
Sbjct: 62 YVAHQNQMDYATLQLQEGRLHFMFDLGKGRT----------------------KVSHPAL 99
Query: 176 DIWLNAVAVNDGQWHFVK 193
++DG+WH VK
Sbjct: 100 --------LSDGKWHTVK 109
Score = 68.8 bits (168), Expect = 4e-13
Identities = 28/167 (16%), Positives = 47/167 (28%), Gaps = 36/167 (21%)
Query: 48 HGVCVGSMHTAKCQCLP-GWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFR 106
+ V K + L V F+ Y + Q+ L+FR
Sbjct: 170 GEIMVNGQQLDKDRPLSASAVDRCYVVAQEGTFFEGSGYAALVKEGYKVRLDLQITLEFR 229
Query: 107 TREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYN 166
T + G L +S + LEI D K+ F N + A
Sbjct: 230 TTSKNGVLLGISSAKV-DAIGLEIVDGKVLFHVNNGAGRITATYQPRAARA--------- 279
Query: 167 LNNLKTDEKDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLV 213
+ DG+WH + S +++++ V
Sbjct: 280 -----------------LCDGKWH--------TLQAHKSKHRIVLTV 301
>1dyk_A Laminin alpha 2 chain; metal binding protein; 2.0A {Mus musculus}
SCOP: b.29.1.4 b.29.1.4 PDB: 1okq_A 1qu0_A
Length = 394
Score = 67.0 bits (163), Expect = 1e-12
Identities = 26/146 (17%), Positives = 43/146 (29%), Gaps = 36/146 (24%)
Query: 68 GTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAI 127
GT S F + K F+ ++ +FRT G L +S Q +
Sbjct: 204 GTCFANAESGTYFDGTGFAKAVGGFKVGLDLL-VEFEFRTTRPTGVLLGVSSQKM-DGMG 261
Query: 128 LEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDG 187
+E+ D KL F + + + +G
Sbjct: 262 IEMIDEKLMFHVDNGAGRFTAIYDAEIPGH--------------------------MCNG 295
Query: 188 QWHFVKTGSALFVTLLISPNQVLVLV 213
QWH VT N++ ++V
Sbjct: 296 QWH--------KVTAKKIKNRLELVV 313
Score = 60.4 bits (146), Expect = 2e-10
Identities = 29/145 (20%), Positives = 51/145 (35%), Gaps = 38/145 (26%)
Query: 57 TAKCQCLPGWSGTGCVTPTSPVT--------FKPQSYIKYALSFEPDKYTTQLQLKFRTR 108
A +P CV + P S+I A K ++L+ RT
Sbjct: 9 PAFPFPVPTMVHGPCVAESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTE 68
Query: 109 EEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLN 168
E G LF ++ ++ ++A +++++ F Y+L + T
Sbjct: 69 AESGLLFYMARINHADFATVQLRNGFPYFSYDLGSGDT---------------------- 106
Query: 169 NLKTDEKDIWLNAVAVNDGQWHFVK 193
+ K +NDGQWH +K
Sbjct: 107 STMIPTK--------INDGQWHKIK 123
>2r1b_A Neurexin-1-beta, neurexin I-beta; beta-sandwich, cell adhesion,
splicing; 1.72A {Rattus norvegicus} PDB: 3mw2_A* 3b3q_E*
3mw3_A*
Length = 220
Score = 62.5 bits (151), Expect = 1e-11
Identities = 24/122 (19%), Positives = 43/122 (35%), Gaps = 32/122 (26%)
Query: 75 TSPVTFKPQSYIKYAL--SFEPDKYTTQLQLKFRTREEFGELFRL-SDQHNREYAILEIK 131
T+ + K I Y + P +L + F T ++ L R+ S +Y L I
Sbjct: 11 TTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIH 70
Query: 132 DSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHF 191
K+ ++N+ TD+ I + +NDG++H
Sbjct: 71 QGKIGVKFNVG-----------------------------TDDIAIEESNAIINDGKYHV 101
Query: 192 VK 193
V+
Sbjct: 102 VR 103
>1d2s_A SHBG, sex hormone-binding globulin; steroid transport, laminin
G-like domain, jellyroll, androgen binding protein
(ABP); HET: DHT; 1.55A {Homo sapiens} SCOP: b.29.1.4
PDB: 1kdk_A* 1kdm_A*
Length = 170
Score = 60.3 bits (146), Expect = 3e-11
Identities = 14/114 (12%), Positives = 37/114 (32%), Gaps = 33/114 (28%)
Query: 80 FKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRY 139
+P + + + L T + RT + G +F ++ +L ++D + +
Sbjct: 12 QEPIAVMTFDL---TKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQL 68
Query: 140 NLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ + + + + ++DG+WH V+
Sbjct: 69 HNHWAQL----------------------TVGAGPR--------LDDGRWHQVE 92
>1h30_A GAS6, growth-arrest-specific protein; laminin G-domain protein,
vitamin K-dependent protein, AXL/SKY/MER ligand, laminin
G- like domain; 2.2A {Homo sapiens} SCOP: b.29.1.4
b.29.1.4 PDB: 2c5d_A*
Length = 422
Score = 61.4 bits (148), Expect = 1e-10
Identities = 18/158 (11%), Positives = 36/158 (22%), Gaps = 36/158 (22%)
Query: 36 CNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPD 95
C+ L + C C+P + F I+
Sbjct: 6 CDGRGGLKLSQDMDTCEDI-----LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFK-RLQ 59
Query: 96 KYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNA 155
+ FRT + G L + + +L ++ +L + N +
Sbjct: 60 PTRLVAEFDFRTFDPEGILLFAGGHQDSTWIVLALRAGRLELQLRYNGVGR--------- 110
Query: 156 IKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ +N G W +
Sbjct: 111 -------------VTSSGPV--------INHGMWQTIS 127
Score = 40.9 bits (95), Expect = 4e-04
Identities = 19/140 (13%), Positives = 30/140 (21%), Gaps = 23/140 (16%)
Query: 54 SMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGE 113
+ QC + + + ++ R + G
Sbjct: 206 VKVNTRMQCFSVTERGSFYPGSGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGV 265
Query: 114 LFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTD 173
LF L R L + L L L +
Sbjct: 266 LFALWAPDLRAVP-LSVALVDYHSTKKLKK----------------------QLVVLAVE 302
Query: 174 EKDIWLNAVAVNDGQWHFVK 193
+ L + V DGQ H V
Sbjct: 303 HTALALMEIKVCDGQEHVVT 322
>2h0b_A Neurexin-1-alpha; B-sandwich, cell adhesion; 2.10A {Bos taurus}
Length = 184
Score = 56.4 bits (136), Expect = 8e-10
Identities = 25/125 (20%), Positives = 37/125 (29%), Gaps = 31/125 (24%)
Query: 70 GCVTPTSPVTFKPQSYIKYALSFEP-DKYTTQLQLKFRTREEFGELFRLSDQHNREYAIL 128
G TFK Y Y LS P + ++ L F+T + G + + Y L
Sbjct: 1 GS-KEEYIATFKGSEYFCYDLSQNPIQSSSDEITLSFKTLQRNGLMLHTGKSAD--YVNL 57
Query: 129 EIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQ 188
+K+ + NL + E + ND
Sbjct: 58 ALKNGAVSLVINLGS---------------------------GAFEALVEPVNGKFNDNA 90
Query: 189 WHFVK 193
WH VK
Sbjct: 91 WHDVK 95
>1f5f_A SHBG, sex hormone-binding globulin; jellyroll, signaling protein;
HET: DHT; 1.70A {Homo sapiens} SCOP: b.29.1.4 PDB:
1lhw_A* 1lho_A* 1lhn_A* 1lhv_A* 1lhu_A*
Length = 205
Score = 56.5 bits (136), Expect = 1e-09
Identities = 14/115 (12%), Positives = 37/115 (32%), Gaps = 33/115 (28%)
Query: 79 TFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFR 138
+P + + + L T + RT + G +F ++ +L ++D + +
Sbjct: 23 GQEPIAVMTFDL---TKITKTSSSFEVRTWDPEGVIFYGDTNPKDDWFMLGLRDGRPEIQ 79
Query: 139 YNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ + + + + ++DG+WH V+
Sbjct: 80 LHNHWAQL----------------------TVGAGPR--------LDDGRWHQVE 104
>3v64_A Low-density lipoprotein receptor-related protein; beta propeller,
laminin-G, signaling, protein binding; HET: NAG; 2.85A
{Rattus norvegicus} PDB: 3v65_A
Length = 191
Score = 53.7 bits (129), Expect = 7e-09
Identities = 21/130 (16%), Positives = 39/130 (30%), Gaps = 42/130 (32%)
Query: 76 SPVTFKPQSYIKYALSFEPD-----------KYTTQLQLKFRTREEFGELFRLSDQHNR- 123
+ F ++YI+Y + + +L RT G + + R
Sbjct: 3 ETLAFDGRTYIEYLNAVIESELTNEIPAEKALQSNHFELSLRTEATQGLVLWIGKAAERA 62
Query: 124 EYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVA 183
+Y L I D L+ Y+L + L++ K
Sbjct: 63 DYMALAIVDGHLQLSYDLGSQPV----------------------VLRSTVK-------- 92
Query: 184 VNDGQWHFVK 193
VN +W ++
Sbjct: 93 VNTNRWLRIR 102
>1pz7_A Agrin; structural protein; 1.42A {Gallus gallus} SCOP: b.29.1.4
PDB: 1pz8_A 1pz9_A 1q56_A
Length = 204
Score = 53.3 bits (128), Expect = 1e-08
Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 45/138 (32%)
Query: 71 CVTPTSPVTFKPQSYIKY----ALSFEPDKY----------TTQLQLKFRTREEFGELFR 116
+ F ++Y++Y S + Y + +L +T G +
Sbjct: 8 AAGDAEAIAFDGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILW 67
Query: 117 LSDQHNR-EYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEK 175
R +Y L I D ++ Y+L + L++
Sbjct: 68 SGKGLERSDYIALAIVDGFVQMMYDLGSKPV----------------------VLRSTVP 105
Query: 176 DIWLNAVAVNDGQWHFVK 193
+N W +K
Sbjct: 106 --------INTNHWTHIK 115
>3pve_A Agrin, AGRN protein; mRNA splicing, structural genomics, PSI-2,
protein structure initiative; 1.40A {Mus musculus}
Length = 189
Score = 52.6 bits (126), Expect = 2e-08
Identities = 18/129 (13%), Positives = 35/129 (27%), Gaps = 35/129 (27%)
Query: 70 GCVTPTSPVTFKPQSYIKYALSFEPD---KYTTQLQLKFRTREEFGELFRLSDQHNRE-- 124
+ F SY++ + L++ F R G L + + +
Sbjct: 4 NAGSRPFLADFNGFSYLELKGLHTFERDLGEKMALEMVFLARGPSGLLLYNGQKTDGKGD 63
Query: 125 YAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAV 184
+ L + + L FRY+L +++ E +
Sbjct: 64 FVSLALHNRHLEFRYDLGKGAA----------------------IIRSKEP--------I 93
Query: 185 NDGQWHFVK 193
G W V
Sbjct: 94 ALGTWVRVF 102
>3sh4_A LG3 peptide; actin disassambly, integrin alpha12 BETA1, metal
binding Pro; 1.50A {Homo sapiens} PDB: 3sh5_A
Length = 195
Score = 49.5 bits (118), Expect = 2e-07
Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 38/122 (31%)
Query: 80 FKPQSYIKY---ALSFEPDKYTTQLQLKFRTREEFGELF-----RLSDQHNREYAILEIK 131
F ++ + S + ++L+ RT G L +++ L ++
Sbjct: 10 FHDDGFLAFPGHVFSRSLPEVPETIELEVRTSTASGLLLWQGVEVGEAGQGKDFISLGLQ 69
Query: 132 DSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHF 191
D L FRY L + + L +++ +NDG+WH
Sbjct: 70 DGHLVFRYQLGSGEA----------------------RLVSEDP--------INDGEWHR 99
Query: 192 VK 193
V
Sbjct: 100 VT 101
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 42.0 bits (98), Expect = 2e-04
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 5/56 (8%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQS 84
C + C + C HG C C C W+G C T T +
Sbjct: 521 CECDDFSCVRYKGEMCSG-HGQCS----CGDCLCDSDWTGYYCNCTTRTDTCMSSN 571
Score = 32.0 bits (72), Expect = 0.30
Identities = 7/44 (15%), Positives = 13/44 (29%), Gaps = 4/44 (9%)
Query: 28 GCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
P+ + C+ + G C+ +C C G
Sbjct: 478 YRPSQQDECSPREGQPVCSQRGECL----CGQCVCHSSDFGKIT 517
Score = 32.0 bits (72), Expect = 0.31
Identities = 11/51 (21%), Positives = 16/51 (31%), Gaps = 3/51 (5%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCV---GSMHTAKCQCLPGWSGTGCVTPTS 76
C+ + P C G+ C+C PGW G+ C
Sbjct: 426 IVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGVCRCGPGWLGSQCECSEE 476
Score = 31.2 bits (70), Expect = 0.54
Identities = 9/56 (16%), Positives = 10/56 (17%), Gaps = 20/56 (35%)
Query: 20 GLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPT 75
G P CP C C +C G T
Sbjct: 595 GDTCEKCPTCPD---ACT---------FKKEC--------VECKKFDRGALHDENT 630
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 39.7 bits (92), Expect = 0.001
Identities = 13/50 (26%), Positives = 20/50 (40%), Gaps = 5/50 (10%)
Query: 29 CPATEAVCNAHSRLHCY-PEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSP 77
C C ++ C P G+C KC+C PG+ G+ C +
Sbjct: 512 CECDTINCERYNGQVCGGPGRGLCF----CGKCRCHPGFEGSACQCERTT 557
Score = 39.3 bits (91), Expect = 0.001
Identities = 11/43 (25%), Positives = 14/43 (32%), Gaps = 5/43 (11%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
C T C R+ C G C C+C G+ C
Sbjct: 553 CERTTEGCLNPRRVEC-SGRGRCR----CNVCECHSGYQLPLC 590
Score = 33.5 bits (76), Expect = 0.11
Identities = 10/49 (20%), Positives = 15/49 (30%), Gaps = 3/49 (6%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCV--GSMHTAKCQCLPGWSGTGCVTPT 75
C R + +C G + C+C G+ G C T
Sbjct: 416 TVQVLPQCECRCRDQS-RDRSLCHGKGFLECGICRCDTGYIGKNCECQT 463
Score = 32.0 bits (72), Expect = 0.28
Identities = 7/54 (12%), Positives = 12/54 (22%), Gaps = 14/54 (25%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKP 82
CP + C ++ C + G G C +
Sbjct: 593 CPGCPSPCG---------KYISCAEC-----LKFEKGPFGKNCSAACPGLQLSN 632
Score = 30.8 bits (69), Expect = 0.81
Identities = 7/45 (15%), Positives = 10/45 (22%), Gaps = 4/45 (8%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVT 73
E C + G CV +C C +
Sbjct: 468 SQELEGSCRKDNNSIICSGLGDCV----CGQCLCHTSDVPGKLIY 508
Score = 27.8 bits (61), Expect = 6.9
Identities = 4/37 (10%), Positives = 9/37 (24%), Gaps = 1/37 (2%)
Query: 36 CNAHSRLHCYPEHGVCVGS-MHTAKCQCLPGWSGTGC 71
C+A + V + C ++
Sbjct: 621 CSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQ 657
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 38.4 bits (89), Expect = 0.002
Identities = 13/46 (28%), Positives = 19/46 (41%), Gaps = 5/46 (10%)
Query: 27 PGCPATEAVCNAHSRLHC-YPEHGVCVGSMHTAKCQCLPGWSGTGC 71
C C ++ C P G+C KC+C PG+ G+ C
Sbjct: 171 QYCECDTINCERYNGQVCGGPGRGLCF----CGKCRCHPGFEGSAC 212
Score = 32.7 bits (74), Expect = 0.12
Identities = 8/36 (22%), Positives = 13/36 (36%), Gaps = 5/36 (13%)
Query: 36 CNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
+ R C+ G + C+C G+ G C
Sbjct: 90 DQSRDRSLCH-GKGFLECGI----CRCDTGYIGKNC 120
Score = 27.3 bits (60), Expect = 6.2
Identities = 5/26 (19%), Positives = 7/26 (26%), Gaps = 4/26 (15%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGCVT 73
G CV +C C +
Sbjct: 148 LGDCVCG----QCLCHTSDVPGKLIY 169
>1aut_L Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 3f6u_L*
Length = 114
Score = 35.5 bits (82), Expect = 0.004
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
HG C+ + + C C GW G C
Sbjct: 25 HGTCIDGIGSFSCDCRSGWEGRFC 48
Score = 28.9 bits (65), Expect = 1.0
Identities = 5/24 (20%), Positives = 9/24 (37%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
C+ + +C C PG+
Sbjct: 65 THYCLEEVGWRRCSCAPGYKLGDD 88
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens}
PDB: 2kb9_A
Length = 169
Score = 35.8 bits (83), Expect = 0.007
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 33 EAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
A+C C P+HG C C+C GW G C
Sbjct: 65 RAICRQG----CSPKHGSCKLP---GDCRCQYGWQGLYC 96
Score = 34.3 bits (79), Expect = 0.024
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 43 HCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSP 77
H + HG G + C + G GC P
Sbjct: 5 HHHHHHGSIEGR---SAVTCDDYYYGFGCNKFCRP 36
Score = 33.1 bits (76), Expect = 0.056
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 5/30 (16%)
Query: 44 CYP--EHGVCVGSMHTAKCQCLPGWSGTGC 71
+P HG+C +C C W G C
Sbjct: 101 PHPGCVHGICNEP---WQCLCETNWGGQLC 127
Score = 31.2 bits (71), Expect = 0.29
Identities = 7/31 (22%), Positives = 10/31 (32%), Gaps = 3/31 (9%)
Query: 44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP 74
+ H C + C+ GW G C
Sbjct: 39 DFFGHYACDQN---GNKTCMEGWMGPECNRA 66
Score = 30.4 bits (69), Expect = 0.47
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 48 HGVCVGSMHTA-KCQCLPGWSGTGC 71
G C + +C C G+SG C
Sbjct: 143 GGTCSNTGPDKYQCSCPEGYSGPNC 167
>1g1t_A E-selectin; EGF, adhesion molecule, SLEX, immune system, membrane
protein; HET: SIA GAL MAG FUC; 1.50A {Homo sapiens}
SCOP: d.169.1.1 g.3.11.1 PDB: 1esl_A
Length = 157
Score = 35.1 bits (81), Expect = 0.012
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 46 PEHGVCVGSMHTAKCQCLPGWSGTGC 71
HG CV +++ C+C PG+SG C
Sbjct: 128 SGHGECVETINNYTCKCDPGFSGLKC 153
>2ygq_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: PCF NAG FUC SCR; 3.95A {Homo sapiens}
Length = 324
Score = 36.0 bits (83), Expect = 0.013
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 3/28 (10%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGCVTPT 75
G C+G +KC+C G+ G C P
Sbjct: 254 GGKCIGK---SKCKCSKGYQGDLCSKPV 278
Score = 35.2 bits (81), Expect = 0.021
Identities = 11/37 (29%), Positives = 13/37 (35%), Gaps = 6/37 (16%)
Query: 44 CYP---EHGVCVGSMHTAKCQCLPGWSGTGCVTPTSP 77
C P G+CV C C PG+ G C
Sbjct: 183 CTPRCMNGGLCVTP---GFCICPPGFYGVNCDKANCS 216
Score = 34.1 bits (78), Expect = 0.051
Identities = 10/30 (33%), Positives = 10/30 (33%), Gaps = 3/30 (10%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGCVTPTSP 77
G C KC C PG G C P
Sbjct: 222 GGTCFY---PGKCICPPGLEGEQCEISKCP 248
Score = 32.9 bits (75), Expect = 0.13
Identities = 11/24 (45%), Positives = 11/24 (45%), Gaps = 3/24 (12%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
HG C KCQC GW G C
Sbjct: 286 HGTCHEP---NKCQCQEGWHGRHC 306
Score = 32.9 bits (75), Expect = 0.14
Identities = 7/30 (23%), Positives = 9/30 (30%), Gaps = 3/30 (10%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGCVTPTSP 77
G C C+C G+ G C
Sbjct: 158 GGFCNER---RICECPDGFHGPHCEKALCT 184
Score = 32.5 bits (74), Expect = 0.16
Identities = 5/53 (9%), Positives = 9/53 (16%), Gaps = 2/53 (3%)
Query: 27 PGCPATEAVC-NAHSRLHCYP-EHGVCVGSMHTAKCQCLPGWSGTGCVTPTSP 77
C + + + V +T C P
Sbjct: 100 ASVVQVGFPCLGKQDGVAAFEVDVIVMNSEGNTILKTPQNAIFFKTCQQAECP 152
>2vh0_B Activated factor XA light chain; serine protease, EGF-like
domain, blood coagulation, polymorphism, glycoprotein,
hydroxylation; HET: GSI; 1.7A {Homo sapiens} PDB:
1ezq_B* 1f0s_B* 1ksn_B* 1f0r_B* 1lpk_A* 1lpz_A* 1lqd_A*
1nfw_B* 1nfx_B* 1nfy_B* 2boh_A* 2cji_B* 1lpg_A* 2j34_B*
2j38_B* 2j2u_B* 2j94_B* 2j95_B* 2uwl_B* 2j4i_B* ...
Length = 134
Score = 33.4 bits (77), Expect = 0.034
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
G C + C CL G+ G C
Sbjct: 53 QGKCKDGLGEYTCTCLEGFEGKNC 76
Score = 31.1 bits (71), Expect = 0.22
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
C ++ C C G++
Sbjct: 92 DQFCHEEQNSVVCSCARGYTLADN 115
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 34.4 bits (78), Expect = 0.043
Identities = 7/39 (17%), Positives = 14/39 (35%), Gaps = 4/39 (10%)
Query: 36 CNAHSRLHCYPEHGVCVGS---MHTAKCQCLPGWSGTGC 71
+ + + C E C + +C C ++G C
Sbjct: 359 SSIGTNV-CDNELLHCQNGGTCHNNVRCLCPAAYTGILC 396
Score = 27.9 bits (61), Expect = 4.8
Identities = 9/36 (25%), Positives = 11/36 (30%)
Query: 36 CNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
R C VCV C+C +G C
Sbjct: 291 IKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDC 326
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 33.1 bits (76), Expect = 0.044
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
G C + + C CLP + G C
Sbjct: 58 GGSCKDQLQSYICFCLPAFEGRNC 81
Score = 26.5 bits (59), Expect = 8.3
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 59 KCQCLPGWSGTGC 71
C+C G+S
Sbjct: 111 SCRCHEGYSLLAD 123
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 34.6 bits (78), Expect = 0.046
Identities = 14/60 (23%), Positives = 20/60 (33%), Gaps = 7/60 (11%)
Query: 28 GCPATEAVCNAHSRLHCYPE---HGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQS 84
T A+ N + C HG CV C C W G C P + + + +
Sbjct: 521 DKQQTWAIDNVYIGDGCLDMCSGHGRCVQG----SCVCDEQWGGLYCDEPETSLPTQLKD 576
Score = 31.9 bits (71), Expect = 0.33
Identities = 15/42 (35%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSY 85
CY HG C+ KC C PG+SG C T F +
Sbjct: 192 CYG-HGSCIN---GTKCICDPGYSGPTCKISTKNPDFLKDDF 229
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 33.1 bits (76), Expect = 0.055
Identities = 7/24 (29%), Positives = 13/24 (54%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
G+C +++ +C C G+ G C
Sbjct: 59 GGLCKDDINSYECWCQVGFEGKNC 82
Score = 31.2 bits (71), Expect = 0.22
Identities = 4/25 (16%), Positives = 7/25 (28%)
Query: 47 EHGVCVGSMHTAKCQCLPGWSGTGC 71
+ G+ C C G+
Sbjct: 96 KQFCKTGADSKVLCSCTTGYRLAPD 120
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 33.9 bits (77), Expect = 0.070
Identities = 12/35 (34%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKP 82
+GVC T +C C PG+ G C TF
Sbjct: 208 NGVCHE--DTGECICPPGFMGRTCEKACELHTFGR 240
Score = 33.5 bits (76), Expect = 0.083
Identities = 12/52 (23%), Positives = 14/52 (26%), Gaps = 4/52 (7%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTF 80
C + R C +C C C PGW G C P
Sbjct: 280 CHPGFYGPDCKLRCSCN-NGEMCD---RFQGCLCSPGWQGLQCEREGIPRMT 327
Score = 30.1 bits (67), Expect = 1.3
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKP 82
+ C+ C C GW G C P + P
Sbjct: 255 YVFCLPD--PYGCSCATGWKGLQCNEACHPGFYGP 287
>1xdt_R Hbegf, heparin-binding epidermal growth factor; complex
(toxin-growth factor), diphtheria toxin, receptor, H
binding epidermal growth factor; 2.65A {Homo sapiens}
SCOP: g.3.11.1
Length = 79
Score = 31.2 bits (70), Expect = 0.084
Identities = 16/55 (29%), Positives = 19/55 (34%), Gaps = 12/55 (21%)
Query: 19 PGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGC 71
GL K P C + C HG C V + C C PG+ G C
Sbjct: 31 KGLGKKRDP--------CLRKYKDFCI--HGECKYVKELRAPSCICHPGYHGERC 75
>1iox_A Betacellulin; EGF-like fold, hormone/growth factor complex; NMR
{Homo sapiens} SCOP: g.3.11.1 PDB: 1ip0_A
Length = 50
Score = 30.2 bits (68), Expect = 0.085
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 36 CNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGC 71
C + +C G C V + T C C G+ G C
Sbjct: 8 CPKQYKHYCI--KGRCRFVVAEQTPSCVCDEGYIGARC 43
>1g1s_A P-selectin; selectin, lectin, EGF, sulphated, SLEX, immune system,
membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo
sapiens} SCOP: d.169.1.1 g.3.11.1 PDB: 1g1r_A* 1g1q_A*
1fsb_A
Length = 162
Score = 32.1 bits (73), Expect = 0.12
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 35 VC-NAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
+C A + + G C+ ++ C C PG+ G C
Sbjct: 116 LCYTASCQDMSCSKQGECLETIGNYTCSCYPGFYGPEC 153
>3cfw_A L-selectin; EGF, cell adhesion, EGF-like domain, glycoprotein,
membrane, sushi, transmembrane; HET: NAG MAN BMA; 2.20A
{Homo sapiens}
Length = 164
Score = 32.1 bits (73), Expect = 0.13
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 35 VC-NAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
+C A + HG CV ++ C C G+ G C
Sbjct: 116 LCYTASCQPWSCSGHGECVEIINNYTCNCDVGYYGPQC 153
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 31.4 bits (72), Expect = 0.14
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
G C+ ++ + +CQCL G++G C
Sbjct: 19 GKCINTLGSFECQCLQGYTGPRC 41
Score = 30.6 bits (70), Expect = 0.27
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
G C+ ++ +C+C G++G C
Sbjct: 95 GRCLDKINEFQCECPTGFTGHLC 117
Score = 29.9 bits (68), Expect = 0.59
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
C+ + +C C+PG+ G C
Sbjct: 57 ATCLDQIGEFQCICMPGYEGVHC 79
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 32.0 bits (73), Expect = 0.16
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
G C + C CL G+ G C
Sbjct: 53 QGKCKDGLGEYTCTCLEGFEGKNC 76
Score = 31.3 bits (71), Expect = 0.32
Identities = 4/24 (16%), Positives = 8/24 (33%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
C ++ C C G++
Sbjct: 92 DQFCHEEQNSVVCSCARGYTLADN 115
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 32.7 bits (74), Expect = 0.19
Identities = 10/38 (26%), Positives = 11/38 (28%), Gaps = 3/38 (7%)
Query: 36 CNAHSRLHCYPEHGVCVGSMH--TAKCQCLPGWSGTGC 71
C H+ C P GV C C G C
Sbjct: 256 CYGHAS-ECAPVDGVNEEVEGMVHGHCMCRHNTKGLNC 292
Score = 30.8 bits (69), Expect = 0.64
Identities = 7/43 (16%), Positives = 12/43 (27%), Gaps = 5/43 (11%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
C + + G+ G +C+C G C
Sbjct: 383 CDPAGSENGGICDGYTDFSVGLIAG-----QCRCKLHVEGERC 420
Score = 28.1 bits (62), Expect = 5.1
Identities = 12/56 (21%), Positives = 14/56 (25%), Gaps = 15/56 (26%)
Query: 20 GLHKNSVPGCPATEAVCNAHSRLH----CYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
L GC CN + C E G C C +G C
Sbjct: 429 DLSAEDPYGCK--SCACNPLGTIPGGNPCDSETGYC---------YCKRLVTGQRC 473
Score = 27.7 bits (61), Expect = 6.2
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 5/31 (16%)
Query: 44 CYPEHGV---CVGSMHTAKCQCLPGWSGTGC 71
C + C S + +C CLP G C
Sbjct: 495 CDLGGALNNSC--SEDSGQCSCLPHMIGRQC 523
>3g5c_A ADAM 22; alpha/beta fold, cross-linked domain, cell adhesion,
cleavag of basic residues, EGF-like domain,
glycoprotein, membrane, phosphoprotein; HET: NAG; 2.36A
{Homo sapiens}
Length = 510
Score = 32.1 bits (72), Expect = 0.25
Identities = 11/39 (28%), Positives = 15/39 (38%), Gaps = 3/39 (7%)
Query: 36 CNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTP 74
C + +GVC + KC C W G+ C T
Sbjct: 447 CLSSKEGTICSGNGVC---SNELKCVCNRHWIGSDCNTY 482
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 32.0 bits (73), Expect = 0.26
Identities = 9/29 (31%), Positives = 14/29 (48%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGCVTPTS 76
+G C S+ C C PG+ G+ C +
Sbjct: 16 NGSCQDSIWGYTCTCSPGYEGSNCELAKN 44
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2
g.3.11.2 g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 30.9 bits (70), Expect = 0.28
Identities = 9/38 (23%), Positives = 11/38 (28%), Gaps = 10/38 (26%)
Query: 36 CNAHSRLHCYPE--HGVCVGSMHTAKCQCLPGWSGTGC 71
C S P+ VC C G +G C
Sbjct: 3 CPGGSSCAIVPKTKEVVC--------THCPTGTAGKRC 32
Score = 26.3 bits (58), Expect = 9.5
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 44 CYPE---HGVCVGSMHTAKCQCLPGWSGTGC 71
C P + T +CQCLP SG C
Sbjct: 114 CNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC 144
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 31.7 bits (71), Expect = 0.29
Identities = 8/44 (18%), Positives = 12/44 (27%), Gaps = 7/44 (15%)
Query: 36 CNAHSRLHCYPE---HGVCVGSMHTAKCQCLPGWSGTGCVTPTS 76
C + G + C+C G+ G C T
Sbjct: 186 CRCRDQSRDRSLCHGKGFLECGI----CRCDTGYIGKNCECQTQ 225
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 31.0 bits (69), Expect = 0.34
Identities = 10/51 (19%), Positives = 15/51 (29%), Gaps = 6/51 (11%)
Query: 24 NSVPGCPATEAVCNAHSRLHCYPE---HGVCVGSMHTAKCQCLPGWSGTGC 71
N++ P + C G C C+C G+ G C
Sbjct: 131 NTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE---RRICECPDGFHGPHC 178
>2uvo_A Agglutinin isolectin 1; carbohydrate-binding protein, hevein
domain, chitin-binding, GERM agglutinin, chitin-binding
protein; HET: NDG NAG GOL; 1.40A {Triticum aestivum}
PDB: 1wgc_A* 2cwg_A* 2uwg_A* 2x3t_A* 4aml_A* 7wga_A
9wga_A 2wgc_A 1wgt_A 1k7t_A* 1k7v_A* 1k7u_A 2uwz_A*
2x52_A* 1t0w_A*
Length = 171
Score = 30.8 bits (69), Expect = 0.40
Identities = 11/62 (17%), Positives = 13/62 (20%), Gaps = 5/62 (8%)
Query: 27 PGCPATEAVCNAHSRLHCYPEHGVCVGSM---HTAKCQCLPGWSGTGCVTPTSPVTFKPQ 83
GC C R C + C + G GC K
Sbjct: 33 KGC--QNGACWTSKRCGSQAGGATCTNNQCCSQYGYCGFGAEYCGAGCQGGPCRADIKCG 90
Query: 84 SY 85
S
Sbjct: 91 SQ 92
Score = 30.8 bits (69), Expect = 0.42
Identities = 12/44 (27%), Positives = 15/44 (34%), Gaps = 12/44 (27%)
Query: 28 GCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
G A VC + C + G C PG+ G GC
Sbjct: 133 GKDAGGRVCTNNY---CCSKWGSCG---------IGPGYCGAGC 164
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding,
EGF-like domain, structure and function, coagulation
factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Length = 39
Score = 27.8 bits (63), Expect = 0.47
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
G C +++ +C C G+ G C
Sbjct: 15 GSCKDDINSYECWCPFGFEGKNC 37
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.0 bits (65), Expect = 0.55
Identities = 5/22 (22%), Positives = 7/22 (31%)
Query: 51 CVGSMHTAKCQCLPGWSGTGCV 72
+ S C C G + V
Sbjct: 25 VLRSNRVEYCWCNSGRAQCHSV 46
Score = 28.2 bits (63), Expect = 1.1
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 49 GVCVGSMHTAK--CQCLPGWSGTGC 71
G C +++ + CQC G++G C
Sbjct: 60 GTCQQALYFSDFVCQCPEGFAGKSC 84
>3t3p_B Integrin beta-3; integrin, cell adhesion, blood clotting,
fibrinogen, platele; HET: NAG BMA MAN; 2.20A {Homo
sapiens} PDB: 3t3m_B* 3nig_B* 3nif_B* 3nid_B* 2vdr_B*
2vc2_B* 2vdk_B* 2vdm_B* 2vdn_B* 2vdl_B* 2vdp_B* 2vdq_B*
2vdo_B* 3fcu_B* 1txv_B* 1ty3_B* 1ty5_B* 1ty6_B* 1ty7_B*
1tye_B*
Length = 472
Score = 30.7 bits (68), Expect = 0.72
Identities = 12/45 (26%), Positives = 15/45 (33%), Gaps = 13/45 (28%)
Query: 27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
P + N + C GVC C PGW G+ C
Sbjct: 440 QAEPNSHRCNNGNGTFEC----GVCR---------CGPGWLGSQC 471
>3urf_Z Tumor necrosis factor receptor superfamily member; cystein-rich
domain, beta-sandwich, cytokine; HET: NAG; 2.70A {Homo
sapiens}
Length = 171
Score = 29.4 bits (65), Expect = 1.0
Identities = 12/59 (20%), Positives = 13/59 (22%), Gaps = 6/59 (10%)
Query: 23 KNSVPGCPA----TEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSP 77
N V C C H C P GV C G +S
Sbjct: 80 HNRVCECKEGRYLEIEFCLKHR--SCPPGFGVVQAGTPERNTVCKRCPDGFFSNETSSK 136
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular
MA protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 29.3 bits (66), Expect = 1.0
Identities = 6/28 (21%), Positives = 10/28 (35%)
Query: 44 CYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
C + C+C G++G C
Sbjct: 66 CEISEAYRGDTFIGYVCKCPRGFNGIHC 93
Score = 28.9 bits (65), Expect = 1.1
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
G+C + C+C + G C
Sbjct: 109 GICTDLVANYSCECPGEFMGRNC 131
Score = 27.8 bits (62), Expect = 2.9
Identities = 6/25 (24%), Positives = 12/25 (48%), Gaps = 2/25 (8%)
Query: 49 GVCVGSMHTA--KCQCLPGWSGTGC 71
G+C+ + C+C G++ C
Sbjct: 12 GICLPGLADGSFSCECPDGFTDPNC 36
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 29.9 bits (66), Expect = 1.2
Identities = 9/29 (31%), Positives = 10/29 (34%), Gaps = 4/29 (13%)
Query: 43 HCYPEHGVCVGSMHTAKCQCLPGWSGTGC 71
HC G + C C PG G C
Sbjct: 468 HCSDGQGHLQCGV----CSCAPGRLGRLC 492
>2bou_A EGF-like module containing mucin-like hormone receptor-like 2
precursor; CD97, CD55, 7TM, calcium-binding, cell
adhesion, EGF-LI domain; 1.90A {Homo sapiens} PDB:
2bo2_A 2box_A
Length = 143
Score = 29.0 bits (65), Expect = 1.2
Identities = 10/34 (29%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 46 PEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVT 79
P+ CV + C+C PG+S + T T
Sbjct: 10 PQDSSCVNATA---CRCNPGFSSFSEIITTPMET 40
>2j3l_A Prolyl-tRNA synthetase; class II aminoacyl- T synthetase, editing,
translation; HET: P5A; 2.3A {Enterococcus faecalis} PDB:
2j3m_A*
Length = 572
Score = 29.4 bits (67), Expect = 1.7
Identities = 8/19 (42%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 109 EEFG-ELFRLSDQHNREYA 126
E +G L+RL D+++R+Y
Sbjct: 87 ETYGPNLYRLKDRNDRDYI 105
>1emn_A Fibrillin; extracellular matrix, calcium-binding, glycoprotein,
repeat, signal, multigene family, disease mutation,
matrix protein; NMR {Homo sapiens} SCOP: g.3.11.1
g.3.11.1 PDB: 1emo_A
Length = 82
Score = 27.5 bits (62), Expect = 1.7
Identities = 9/27 (33%), Positives = 12/27 (44%), Gaps = 6/27 (22%)
Query: 48 HGVCV---GSMHTAKCQCLPGWSGTGC 71
HG C+ GS C+C G+ G
Sbjct: 16 HGQCINTDGSYR---CECPFGYILAGN 39
>2pe4_A Hyaluronidase-1; hyaluronan, EGF-like domain, hydrolase; HET: NAG
BMA MAN; 2.00A {Homo sapiens}
Length = 424
Score = 29.6 bits (66), Expect = 1.8
Identities = 7/13 (53%), Positives = 8/13 (61%)
Query: 59 KCQCLPGWSGTGC 71
KC+C PGW C
Sbjct: 398 KCRCYPGWQAPWC 410
>2i4l_A Proline-tRNA ligase; alpha beta; 2.00A {Rhodopseudomonas palustris}
PDB: 2i4m_A* 2i4n_A* 2i4o_A*
Length = 458
Score = 28.8 bits (65), Expect = 2.8
Identities = 7/19 (36%), Positives = 13/19 (68%), Gaps = 1/19 (5%)
Query: 109 EEFG-ELFRLSDQHNREYA 126
+ +G E+ R++D+H RE
Sbjct: 107 DAYGPEMLRIADRHKRELL 125
>2jye_A Granulin A; epithelin, human, stack of hairpins, alternative
splicing, cytokine, glycoprotein, polymorphism,
secreted; NMR {Homo sapiens}
Length = 72
Score = 26.8 bits (59), Expect = 2.8
Identities = 13/37 (35%), Positives = 15/37 (40%), Gaps = 5/37 (13%)
Query: 29 CPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPG 65
CP T+AVC +HC P C T K C
Sbjct: 29 CPFTQAVC-CEDHIHCCPAGFTC----DTQKGTCEQK 60
>2w86_A Fibrillin-1, fibrillin1; phosphoprotein, EGF-like domain, disease
mutation, craniosynostosis, extracellular matrix,
fibrillin calcium cbegf hybrid; 1.80A {Homo sapiens}
Length = 147
Score = 27.7 bits (62), Expect = 3.0
Identities = 7/27 (25%), Positives = 10/27 (37%), Gaps = 6/27 (22%)
Query: 48 HGVCV---GSMHTAKCQCLPGWSGTGC 71
+GVC GS C+C +
Sbjct: 14 NGVCKNSPGSFI---CECSSESTLDPT 37
Score = 26.9 bits (60), Expect = 5.2
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 10/33 (30%)
Query: 47 EHGVCV---GSMHTAKCQCLPGWSGTG----CV 72
++G+CV GS CQC G + C+
Sbjct: 118 KNGLCVNTRGSFK---CQCPSGMTLDATGRICL 147
>3nm8_A Tyrosinase; TYPE3 copper proteins, oxidoreductase; 2.00A {Bacillus
megaterium} PDB: 3npy_A 3nq0_A 3nq1_A* 3ntm_A 3nq5_A
Length = 303
Score = 28.6 bits (63), Expect = 3.4
Identities = 12/69 (17%), Positives = 24/69 (34%), Gaps = 4/69 (5%)
Query: 133 SKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFV 192
+K R R N+ +L EK ++ + K + Y+ + + H
Sbjct: 3 NKYRVRKNVLHLTDTEKRDFVRTVLILKEKGIYDRYIAWHGAAGKFHTPPGSDRNAAH-- 60
Query: 193 KTGSALFVT 201
S+ F+
Sbjct: 61 --MSSAFLP 67
>3hh2_C Follistatin; protein-protein complex, TB domain, cystine knot
motif, TGF- fold, disulfide linked dimer, CLE PAIR of
basic residues, cytokine; HET: CIT; 2.15A {Homo sapiens}
PDB: 2b0u_C* 2p6a_D
Length = 288
Score = 28.4 bits (62), Expect = 3.6
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 5/55 (9%)
Query: 21 LHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMH-TAKCQCLPGWSGTGCVTP 74
+ P C + C C C + +C C P S P
Sbjct: 51 IFNGGAPNCIPCKETCENV---DC-GPGKKCRMNKKNKPRCVCAPDCSNITWKGP 101
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D
bond, glycoprotein, membrane, secreted, signal-anchor,
transmembrane, apoptosis; 2.45A {Homo sapiens} PDB:
3mi8_D 3mhd_D
Length = 176
Score = 27.8 bits (61), Expect = 4.1
Identities = 15/56 (26%), Positives = 20/56 (35%), Gaps = 2/56 (3%)
Query: 27 PGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKP 82
G A C H+ C P GV + QC P GT + +S +P
Sbjct: 90 TGFFAHAGFCLEHA--SCPPGAGVIAPGTPSQNTQCQPCPPGTFSASSSSSEQCQP 143
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 25.9 bits (56), Expect = 4.7
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 6/41 (14%)
Query: 36 CNAHSRLHCYPEHGVC-----VGSMHTAKCQCLPGWSGTGC 71
C + C G C + + C+C PG++G C
Sbjct: 6 CAEKEKTFCV-NGGECFMVKDLSNPSRYLCKCQPGFTGARC 45
>1yy9_A Epidermal growth factor receptor; cell surface receptor, tyrosine
kinase, glycoprotein, antigen:antibody complex, FAB
fragment, antitumor, drug; HET: NDG NAG BMA MAN; 2.60A
{Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1 g.3.9.1
PDB: 3qwq_A* 1nql_A* 3b2v_A* 1ivo_A* 3njp_A*
Length = 624
Score = 28.1 bits (61), Expect = 5.6
Identities = 11/82 (13%), Positives = 17/82 (20%)
Query: 5 LNIVTITYLYDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLP 64
L L K + H C G C
Sbjct: 445 LCYANTINWKKLFGTSGQKTKIISNRGENKCKATGQVCHALCSPEGCWGPEPRDCVSCRN 504
Query: 65 GWSGTGCVTPTSPVTFKPQSYI 86
G CV + +P+ ++
Sbjct: 505 VSRGRECVDKCKLLEGEPREFV 526
Score = 27.3 bits (59), Expect = 9.5
Identities = 13/73 (17%), Positives = 19/73 (26%), Gaps = 3/73 (4%)
Query: 22 HKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFK 81
H + V C A C G C + + + T+ FK
Sbjct: 280 HGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGIGEF---KDSLSINATNIKHFK 336
Query: 82 PQSYIKYALSFEP 94
+ I L P
Sbjct: 337 NCTSISGDLHILP 349
>2w2n_E LDL receptor, low-density lipoprotein receptor;
hydrolase-receptor complex, PCSK9, proprotein converta
low-density lipoprotein receptor, EGF; 2.30A {Homo
sapiens} PDB: 2w2q_E 2w2o_E 2w2p_E 2w2m_E 3gcw_E 3bps_E
3gcx_E 1hz8_A 1i0u_A 1hj7_A
Length = 107
Score = 26.5 bits (59), Expect = 6.4
Identities = 3/26 (11%), Positives = 5/26 (19%)
Query: 47 EHGVCVGSMHTAKCQCLPGWSGTGCV 72
+H M G +
Sbjct: 2 KHHHHHHPMSDYDIPTTENLYFQGAM 27
>1n1i_A Merozoite surface protein-1; MSP1, malaria, surface antigen,
glycoprotein, EGF domain, cell adhesion; HET: HIS;
2.40A {Plasmodium knowlesi strain H} SCOP: g.3.11.4
g.3.11.4
Length = 105
Score = 26.2 bits (57), Expect = 7.2
Identities = 10/33 (30%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
Query: 46 PEHGVCVGSMH-TAKCQCLPGWSGTG--CVTPT 75
PE+ C + T + +CL G+ G CV +
Sbjct: 19 PENAACYRYLDGTEEWRCLLGFKEVGGKCVPAS 51
>1z1y_A Ookinete surface protein PVS25; four EGF-like domains, cell
adhesion; HET: MLY; 2.00A {Plasmodium vivax} PDB: 1z27_A
1z3g_A
Length = 186
Score = 26.9 bits (58), Expect = 7.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 44 CYPEHGVCVGSMHTAKCQCLPGWSG 68
C ++ VC CQC+ G++
Sbjct: 146 CNTDNEVCXNVEGVYXCQCMEGFTF 170
>3b4v_C Follistatin-like 3; ligand-inhibitor signalling complex, cleavage
on PAIR of BAS residues, glycoprotein, growth factor,
hormone, secreted; HET: NAG; 2.48A {Homo sapiens}
Length = 237
Score = 27.2 bits (59), Expect = 8.2
Identities = 7/65 (10%), Positives = 15/65 (23%), Gaps = 4/65 (6%)
Query: 14 YDLANPGLHKNSVPGCPATEAVCNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVT 73
++ G ++ + C C +C+C P +
Sbjct: 48 LTHPGNKINLLGFLGLVHCLPCKDSCDGVEC-GPGKACRMLGGRPRCECAP---DCSGLP 103
Query: 74 PTSPV 78
V
Sbjct: 104 ARLQV 108
>1b9w_A Protein (merozoite surface protein 1); MSP-1, candidate malaria
vaccine, surface antigen; 1.80A {Plasmodium cynomolgi}
SCOP: g.3.11.4 g.3.11.4 PDB: 2npr_A
Length = 95
Score = 25.8 bits (56), Expect = 8.5
Identities = 8/30 (26%), Positives = 13/30 (43%), Gaps = 3/30 (10%)
Query: 46 PEHGVCVGSMH-TAKCQCLPGWSGTG--CV 72
PE+ C + T + +CL + CV
Sbjct: 13 PENAACYRYLDGTEEWRCLLYFKEDAGKCV 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.137 0.423
Gapped
Lambda K H
0.267 0.0681 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,320,708
Number of extensions: 326891
Number of successful extensions: 824
Number of sequences better than 10.0: 1
Number of HSP's gapped: 768
Number of HSP's successfully gapped: 139
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 58 (26.2 bits)