RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy592
(339 letters)
>d1dyka1 b.29.1.4 (A:2744-2932) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 189
Score = 54.5 bits (130), Expect = 2e-09
Identities = 18/81 (22%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 71 CVTPTSPVT--------FKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHN 122
CV + P S+I A K ++L+ RT E G LF ++ ++
Sbjct: 4 CVAESEPALLTGSKQFGLSRNSHIAIAFDDTKVKNRLTIELEVRTEAESGLLFYMARINH 63
Query: 123 REYAILEIKDSKLRFRYNLNN 143
++A +++++ F Y+L +
Sbjct: 64 ADFATVQLRNGFPYFSYDLGS 84
>d1h30a1 b.29.1.4 (A:261-451) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 51.7 bits (123), Expect = 1e-08
Identities = 21/146 (14%), Positives = 42/146 (28%), Gaps = 8/146 (5%)
Query: 60 CQCLPGWSGTGCVTPTSPVTFK--PQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRL 117
C+P + F P +++ + FRT + G L
Sbjct: 21 LPCVPFSVAKSVKSLYLGRMFSGTPVIRLRFKR---LQPTRLVAEFDFRTFDPEGILLFA 77
Query: 118 SDQHNREYAILEIKDSKLRFRYNLNN-LKTDEKDIWLNAIKDSKLRFRYNLNN--LKTDE 174
+ + +L ++ +L + N + +N + N +K +
Sbjct: 78 GGHQDSTWIVLALRAGRLELQLRYNGVGRVTSSGPVINHGMWQTISVEELARNLVIKVNR 137
Query: 175 KDIWLNAVAVNDGQWHFVKTGSALFV 200
+ AVA + Q L V
Sbjct: 138 DAVMKIAVAGDLFQPERGLYHLNLTV 163
>d1h30a2 b.29.1.4 (A:461-678) Growth-arrest-specific protein Gas6
{Human (Homo sapiens) [TaxId: 9606]}
Length = 218
Score = 46.5 bits (109), Expect = 1e-06
Identities = 24/211 (11%), Positives = 52/211 (24%), Gaps = 39/211 (18%)
Query: 59 KCQCL----PGWSGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGEL 114
+ QC G G + + + ++ R + G L
Sbjct: 7 RMQCFSVTERGSFYPG----SGFAFYSLDYMRTPLDVGTESTWEVEVVAHIRPAADTGVL 62
Query: 115 FRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDE 174
F L R + + + + + + L L +
Sbjct: 63 FALWAPDLRA---VPLSVALVDYHSTKK--------------------LKKQLVVLAVEH 99
Query: 175 KDIWLNAVAVNDGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDV 234
+ L + V DGQ H VT+ + + + V + + + +
Sbjct: 100 TALALMEIKVCDGQEH--------VVTVSLRDGEATLEVDGTRGQSEVSAAQLQERLAVL 151
Query: 235 RENIINYDDEGGGEDDMTAFDITPLQIPIGG 265
++ + G P+ G
Sbjct: 152 ERHLRSPVLTFAGGLPDVPVTSAPVTAFYRG 182
>d1dyka2 b.29.1.4 (A:2933-3117) Laminin alpha2 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 185
Score = 45.6 bits (107), Expect = 2e-06
Identities = 23/114 (20%), Positives = 39/114 (34%), Gaps = 28/114 (24%)
Query: 80 FKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRY 139
F + K F+ ++ +FRT G L +S Q + +E+ D KL F
Sbjct: 8 FDGTGFAKAVGGFKVGLDLL-VEFEFRTTRPTGVLLGVSSQ-KMDGMGIEMIDEKLMFHV 65
Query: 140 NLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ + AI D+++ + +GQWH V
Sbjct: 66 DNGAGRF-------TAIYDAEIPGH-------------------MCNGQWHKVT 93
>d1pz7a_ b.29.1.4 (A:) Agrin {Chicken (Gallus gallus) [TaxId: 9031]}
Length = 195
Score = 44.9 bits (105), Expect = 3e-06
Identities = 15/78 (19%), Positives = 27/78 (34%), Gaps = 1/78 (1%)
Query: 67 SGTGCVTPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSD-QHNREY 125
G + + VT P + A E + +L +T G + +Y
Sbjct: 12 DGRTYMEYHNAVTKSPDALDYPAEPSEKALQSNHFELSIKTEATQGLILWSGKGLERSDY 71
Query: 126 AILEIKDSKLRFRYNLNN 143
L I D ++ Y+L +
Sbjct: 72 IALAIVDGFVQMMYDLGS 89
>d2r1da1 b.29.1.4 (A:36-212) Ligand-binding domain of neurexin 1beta
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 177
Score = 42.9 bits (100), Expect = 1e-05
Identities = 22/131 (16%), Positives = 45/131 (34%), Gaps = 5/131 (3%)
Query: 75 TSPVTFKPQSYIKYAL--SFEPDKYTTQLQLKFRTREEFGELFRL-SDQHNREYAILEIK 131
T+ + K I Y + P +L + F T ++ L R+ S +Y L I
Sbjct: 4 TTYIFSKGGGQITYKWPPNDRPSTRADRLAIGFSTVQKEAVLVRVDSSSGLGDYLELHIH 63
Query: 132 DSKLRFRYNLNNLKTDEK--DIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQW 189
K+ ++N+ + + +N K +RF + N + Q
Sbjct: 64 QGKIGVKFNVGTDDIAIEESNAIINDGKYHVVRFTRSGGNATLQVDSWPVIERYPAGRQL 123
Query: 190 HFVKTGSALFV 200
+ + + +
Sbjct: 124 TIFNSQATIII 134
>d1d2sa_ b.29.1.4 (A:) Sex hormone-binding globulin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 170
Score = 42.1 bits (98), Expect = 2e-05
Identities = 13/71 (18%), Positives = 27/71 (38%), Gaps = 11/71 (15%)
Query: 73 TPTSPVTFKPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKD 132
P + +TF K + SFE RT + G +F ++ +L ++D
Sbjct: 13 EPIAVMTFDLTKITKTSSSFE-----------VRTWDPEGVIFYGDTNPKDDWFMLGLRD 61
Query: 133 SKLRFRYNLNN 143
+ + + +
Sbjct: 62 GRPEIQLHNHW 72
>d1l3ya_ g.3.11.6 (A:) Integrin beta EGF-like domains {Human (Homo
sapiens) [TaxId: 9606]}
Length = 41
Score = 37.5 bits (87), Expect = 7e-05
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 5/37 (13%)
Query: 36 CNAHSRLHCY-PEHGVCVGSMHTAKCQCLPGWSGTGC 71
C ++ C P G+C KC+C PG+ G+ C
Sbjct: 7 CERYNGQVCGGPGRGLCF----CGKCRCHPGFEGSAC 39
>d1autl1 g.3.11.1 (L:49-96) Activated protein c (autoprothrombin
IIa) {Human (Homo sapiens) [TaxId: 9606]}
Length = 48
Score = 35.6 bits (82), Expect = 4e-04
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 47 EHGVCVGSMHTAKCQCLPGWSGTGC 71
HG C+ + + C C GW G C
Sbjct: 17 GHGTCIDGIGSFSCDCRSGWEGRFC 41
>d1g1ta2 g.3.11.1 (A:119-157) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 39
Score = 32.0 bits (73), Expect = 0.006
Identities = 11/24 (45%), Positives = 16/24 (66%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
HG CV +++ C+C PG+SG C
Sbjct: 12 HGECVETINNYTCKCDPGFSGLKC 35
>d1g1sa2 g.3.11.1 (A:119-158) E-selectin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 40
Score = 32.1 bits (73), Expect = 0.006
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
G C+ ++ C C PG+ G C
Sbjct: 12 QGECLETIGNYTCSCYPGFYGPEC 35
>d2vj3a2 g.3.11.1 (A:453-491) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 31.6 bits (72), Expect = 0.007
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGCVTPT 75
C+ + +C C+PG+ G C T
Sbjct: 13 ATCLDQIGEFQCICMPGYEGVHCEVNT 39
>d2vj3a1 g.3.11.1 (A:411-452) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 42
Score = 31.2 bits (71), Expect = 0.010
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
G C+ ++ + +CQCL G++G C
Sbjct: 16 AGKCINTLGSFECQCLQGYTGPRC 39
>d2c4fl1 g.3.11.1 (L:46-82) Factor IX (IXa) {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 37
Score = 31.2 bits (71), Expect = 0.012
Identities = 8/23 (34%), Positives = 11/23 (47%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
G C + + C CLP + G C
Sbjct: 14 GSCKDQLQSYICFCLPAFEGRNC 36
>d2vj3a3 g.3.11.1 (A:492-526) Neurogenic locus notch homolog
protein 1, Notch1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 35
Score = 30.8 bits (70), Expect = 0.014
Identities = 7/23 (30%), Positives = 14/23 (60%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
G C+ ++ +C+C G++G C
Sbjct: 12 GRCLDKINEFQCECPTGFTGHLC 34
>d1xkba1 g.3.11.1 (A:48-86) Factor X, N-terminal module {Human
(Homo sapiens) [TaxId: 9606]}
Length = 39
Score = 30.8 bits (70), Expect = 0.016
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
G C + C CL G+ G C
Sbjct: 12 GKCKDGLGEYTCTCLEGFEGKNC 34
>d1edmb_ g.3.11.1 (B:) Factor IX (IXa) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 39
Score = 30.4 bits (69), Expect = 0.019
Identities = 7/23 (30%), Positives = 12/23 (52%)
Query: 49 GVCVGSMHTAKCQCLPGWSGTGC 71
G C +++ +C C G+ G C
Sbjct: 15 GSCKDDINSYECWCPFGFEGKNC 37
>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 53
Score = 30.6 bits (69), Expect = 0.022
Identities = 18/56 (32%), Positives = 25/56 (44%), Gaps = 18/56 (32%)
Query: 24 NSVPGCPATEAVCNAHSRLHCYPEH----GVC--VGSMHTAKCQCLPGWSGTGCVT 73
NS PGCP+ Y + GVC + S+ + C C+ G+SG C T
Sbjct: 1 NSYPGCPS------------SYDGYCLNGGVCMHIESLDSYTCNCVIGYSGDRCQT 44
>d1emoa1 g.3.11.1 (A:2124-2166) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 29.3 bits (66), Expect = 0.058
Identities = 9/27 (33%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTG--CV 72
HG C+ + + +C+C G+ G CV
Sbjct: 16 HGQCINTDGSYRCECPFGYILAGNECV 42
>d1moxc_ g.3.11.1 (C:) Transforming growth factor alpha {Human
(Homo sapiens) [TaxId: 9606]}
Length = 49
Score = 29.4 bits (66), Expect = 0.061
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 4/38 (10%)
Query: 36 CNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGC 71
C C+ HG C + C C G+ G C
Sbjct: 7 CPDSHTQFCF--HGTCRFLVQEDKPACVCHSGYVGARC 42
>d1k36a_ g.3.11.1 (A:) Epiregulin, EGF-domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 46
Score = 29.0 bits (65), Expect = 0.076
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 36 CNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGC 71
C++ +C HG C + M C+C G++G C
Sbjct: 6 CSSDMNGYCL--HGQCIYLVDMSQNYCRCEVGYTGVRC 41
>d1ioxa_ g.3.11.1 (A:) Betacellulin-2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 50
Score = 29.0 bits (65), Expect = 0.082
Identities = 11/38 (28%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 36 CNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGC 71
C + +C G C V + T C C G+ G C
Sbjct: 8 CPKQYKHYCI--KGRCRFVVAEQTPSCVCDEGYIGARC 43
>d1lmja1 g.3.11.1 (A:3-46) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 44
Score = 28.3 bits (63), Expect = 0.15
Identities = 7/31 (22%), Positives = 11/31 (35%), Gaps = 5/31 (16%)
Query: 47 EHGVCVGSMHTAKCQCLPG-----WSGTGCV 72
G CV + +C+C G C+
Sbjct: 14 GRGQCVNTPGDFECKCDEGYESGFMMMKNCM 44
>d1xdtr_ g.3.11.1 (R:) Heparin-binding epidermal growth factor,
HBEGF {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 28.2 bits (63), Expect = 0.16
Identities = 12/38 (31%), Positives = 15/38 (39%), Gaps = 4/38 (10%)
Query: 36 CNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGC 71
C + C HG C V + C C PG+ G C
Sbjct: 2 CLRKYKDFCI--HGECKYVKELRAPSCICHPGYHGERC 37
>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
sapiens) [TaxId: 9606]}
Length = 48
Score = 27.9 bits (62), Expect = 0.19
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 33 EAVCNAHSRLHCYPEHGVC--VGSMHTAKCQCLPGWSGTGCVT 73
++ C +C GVC + ++ C C+ G+ G C
Sbjct: 1 DSECPLSHDGYCL-HDGVCMYIEALDKYACNCVVGYIGERCQY 42
>d1jv2b4 g.3.11.6 (B:532-562) Integrin beta EGF-like domains
{Human (Homo sapiens) [TaxId: 9606]}
Length = 31
Score = 27.5 bits (61), Expect = 0.21
Identities = 8/24 (33%), Positives = 9/24 (37%), Gaps = 4/24 (16%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTGC 71
HG C C C W+G C
Sbjct: 8 HGQC----SCGDCLCDSDWTGYYC 27
>d1lmja2 g.3.11.1 (A:47-88) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 42
Score = 26.7 bits (59), Expect = 0.44
Identities = 8/30 (26%), Positives = 14/30 (46%), Gaps = 4/30 (13%)
Query: 47 EHGVCVGSMHTAKCQCLPGWS----GTGCV 72
GVC + + +C+C PG + C+
Sbjct: 13 RGGVCHNTEGSYRCECPPGHQLSPNISACI 42
>d1haea_ g.3.11.1 (A:) Heregulin-alpha, EGF-like domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 63
Score = 27.3 bits (60), Expect = 0.46
Identities = 8/41 (19%), Positives = 15/41 (36%), Gaps = 2/41 (4%)
Query: 44 CYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQS 84
C+ + S + C+C PG++G C +
Sbjct: 20 CFMVKDLSNPSRYL--CKCQPGFTGARCTENVPMKVQNQEK 58
>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 51
Score = 26.8 bits (59), Expect = 0.51
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 3/31 (9%)
Query: 44 CYPE---HGVCVGSMHTAKCQCLPGWSGTGC 71
C P + T +CQCLP SG C
Sbjct: 3 CNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC 33
>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 55
Score = 27.2 bits (60), Expect = 0.51
Identities = 14/60 (23%), Positives = 19/60 (31%), Gaps = 11/60 (18%)
Query: 29 CPATEAVCNAHSRLHCYPE--HGVCVGSMH-TA--KC-QCLPGWSGTGCVTPTSPVTFKP 82
CP C S P+ VC TA +C C G+ G + +P
Sbjct: 1 CP-----CPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRP 55
>d1j27a_ d.58.50.1 (A:) Hypothetical protein TT1725 {Thermus
thermophilus [TaxId: 274]}
Length = 98
Score = 27.7 bits (62), Expect = 0.77
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 134 KLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAV 182
R +LK EK + + +L+ R+ ++ + D W V
Sbjct: 9 TARLETPARSLK--EKRALIKPALE-RLKARFPVSAARLYGLDAWGYEV 54
>d1gl4a2 g.3.11.5 (A:359-398) EGF-like domain of nidogen-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 40
Score = 26.0 bits (57), Expect = 0.81
Identities = 8/28 (28%), Positives = 12/28 (42%), Gaps = 2/28 (7%)
Query: 47 EHGVCVGSMHTAKCQCLPGWSGTG--CV 72
H C C+C+ ++G G CV
Sbjct: 11 VHAECRDYATGFCCRCVANYTGNGRQCV 38
>d1cvua2 g.3.11.1 (A:33-73) Prostaglandin H2 synthase-1, EGF-like
module {Mouse (Mus musculus) [TaxId: 10090]}
Length = 41
Score = 25.9 bits (57), Expect = 0.83
Identities = 10/29 (34%), Positives = 12/29 (41%), Gaps = 2/29 (6%)
Query: 48 HGVCV-GSMHTAKCQC-LPGWSGTGCVTP 74
G C+ KC C G+ G C TP
Sbjct: 12 RGECMSTGFDQYKCDCTRTGFYGENCTTP 40
>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
t-PA {Human (Homo sapiens) [TaxId: 9606]}
Length = 41
Score = 26.0 bits (57), Expect = 0.93
Identities = 8/25 (32%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 49 GVCVGSMHTAK--CQCLPGWSGTGC 71
G C +++ + CQC G++G C
Sbjct: 10 GTCQQALYFSDFVCQCPEGFAGKSC 34
>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 114
Score = 27.4 bits (60), Expect = 1.2
Identities = 15/110 (13%), Positives = 30/110 (27%), Gaps = 5/110 (4%)
Query: 84 SYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYNLNN 143
S IK+ + E + L +L R ++ ++ + +
Sbjct: 10 SLIKWRV-IEGAARSVAGGLAESDDALVEQLTSQQALPVRACRLVSVRSEQETSQLVARL 68
Query: 144 LKTDEKDIWLNAIKDSKLRFRYNLNNLKTDEKDIWLNAVAVNDGQWHFVK 193
+ + + R + + D WL VA H K
Sbjct: 69 EQLFPVSALVASSGKQLAGVRNGYLDYQRLGLDRWLALVAA----HHLAK 114
>d1uzka1 g.3.11.1 (A:1486-1528) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 25.2 bits (55), Expect = 1.6
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 48 HGVCVGSMHTAKCQCLPGWS----GTGCV 72
G CV + + C C P + GCV
Sbjct: 14 SGNCVNTPGSYICDCPPDFELNPTRVGCV 42
>d2djia1 c.31.1.3 (A:187-363) Pyruvate oxidase {Aerococcus viridans
[TaxId: 1377]}
Length = 177
Score = 27.3 bits (59), Expect = 1.8
Identities = 20/142 (14%), Positives = 43/142 (30%), Gaps = 2/142 (1%)
Query: 36 CNAHSRLHCYPEHGVCVGSMHTAKCQCLPGWSGTGCVTPTSPVTFKPQSYIKYALSFEPD 95
A L + V + + + L +
Sbjct: 36 GPAVQELARKIKAPVITTGKNFETFEWDFEALTGSTYRVGWKPANETILEADTVLFAGSN 95
Query: 96 KYTTQLQLKFRTREEFGELFRLSDQHNREYAI-LEIK-DSKLRFRYNLNNLKTDEKDIWL 153
++++ FR + F ++ + + + I D+ L LN + E+ W
Sbjct: 96 FPFSEVEGTFRNVDNFIQIDIDPAMLGKRHHADVAILGDAALAIDEILNKVDAVEESAWW 155
Query: 154 NAIKDSKLRFRYNLNNLKTDEK 175
A + +R +N L+T E+
Sbjct: 156 TANLKNIANWREYINMLETKEE 177
>d1n45a_ a.132.1.1 (A:) Heme oxygenase-1 (HO-1) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 214
Score = 27.0 bits (59), Expect = 2.8
Identities = 9/44 (20%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 125 YAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKDSKLRFRYNLN 168
I K +R +N+L+ I+++K F N+
Sbjct: 161 PNIASATKFKQLYRSRMNSLEMTPAV-RQRVIEEAKTAFLLNIQ 203
>d1rroa_ a.39.1.4 (A:) Oncomodulin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 108
Score = 25.7 bits (56), Expect = 3.5
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 4/77 (5%)
Query: 91 SFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAIL-EIKDSKLRFRYNLNNLKTDEK 149
+FEP K+ L + + ++FR D Y E+K +F+ + L E
Sbjct: 23 TFEPQKFFQTSGLSKMSASQVKDIFRFIDNDQSGYLDGDELKYFLQKFQSDARELTESET 82
Query: 150 DIWLNAI---KDSKLRF 163
++A D K+
Sbjct: 83 KSLMDAADNDGDGKIGA 99
>d1uzka2 g.3.11.1 (A:1605-1647) Fibrillin-1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 43
Score = 24.4 bits (53), Expect = 4.1
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 47 EHGVCVGSMHTAKCQCLPGW 66
+ G C+ + + +C+C G+
Sbjct: 14 QGGKCINTFGSFQCRCPTGY 33
>d1luaa2 c.58.1.4 (A:2-97) Methylene-tetrahydromethanopterin
dehydrogenase {Methylobacterium extorquens [TaxId: 408]}
Length = 96
Score = 25.4 bits (56), Expect = 4.3
Identities = 7/20 (35%), Positives = 8/20 (40%), Gaps = 2/20 (10%)
Query: 301 DADPNAPPFDDLRNYAYEGG 320
D D FD Y+GG
Sbjct: 9 DTDATPSVFD--VVVGYDGG 26
>d1dx5i3 g.3.11.1 (I:423-462) Thrombomodulin, different EGF-like
domains {Human (Homo sapiens) [TaxId: 9606]}
Length = 40
Score = 23.6 bits (51), Expect = 6.9
Identities = 8/23 (34%), Positives = 10/23 (43%)
Query: 48 HGVCVGSMHTAKCQCLPGWSGTG 70
GVC T +C C P + G
Sbjct: 12 SGVCHNLPGTFECICGPDSALAG 34
>d1mxaa2 d.130.1.1 (A:108-231) S-adenosylmethionine synthetase
{Escherichia coli [TaxId: 562]}
Length = 124
Score = 25.2 bits (55), Expect = 7.0
Identities = 15/73 (20%), Positives = 26/73 (35%)
Query: 186 DGQWHFVKTGSALFVTLLISPNQVLVLVFVVYSRRREAHIKYPGPDDDVRENIINYDDEG 245
+G +++ + VT +++ + VV S + I + V E II
Sbjct: 47 NGTLPWLRPDAKSQVTFQYDDGKIVGIDAVVLSTQHSEEIDQKSLQEAVMEEIIKPILPA 106
Query: 246 GGEDDMTAFDITP 258
T F I P
Sbjct: 107 EWLTSATKFFINP 119
>d1ki1b2 b.55.1.1 (B:1439-1580) GEF of intersectin {Human (Homo
sapiens) [TaxId: 9606]}
Length = 142
Score = 25.2 bits (54), Expect = 8.7
Identities = 11/84 (13%), Positives = 27/84 (32%), Gaps = 1/84 (1%)
Query: 81 KPQSYIKYALSFEPDKYTTQLQLKFRTREEFGELFRLSDQHNREYAILEIKDSKLRFRYN 140
+ + + + + + LQ ++T E+ + S + Y
Sbjct: 53 QITKPLGSSGTDKVFSPKSNLQYMYKTPIFLNEVLV-KLPTDPSGDEPIFHISHIDRVYT 111
Query: 141 LNNLKTDEKDIWLNAIKDSKLRFR 164
L +E+ W+ IK + +
Sbjct: 112 LRAESINERTAWVQKIKAASELYI 135
>d1ntya2 b.55.1.1 (A:1415-1535) Triple functional domain protein
TRIO {Human (Homo sapiens) [TaxId: 9606]}
Length = 121
Score = 24.9 bits (54), Expect = 8.7
Identities = 5/46 (10%), Positives = 16/46 (34%)
Query: 113 ELFRLSDQHNREYAILEIKDSKLRFRYNLNNLKTDEKDIWLNAIKD 158
+ + ++A+ + + L + K W+ I++
Sbjct: 70 GVTEHVEGDPCKFALWVGRTPTSDNKIVLKASSIENKQDWIKHIRE 115
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.137 0.423
Gapped
Lambda K H
0.267 0.0607 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,324,052
Number of extensions: 65117
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 52
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.5 bits)