BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5921
(1200 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1
SV=3
Length = 3122
Score = 957 bits (2473), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 453/877 (51%), Positives = 642/877 (73%), Gaps = 28/877 (3%)
Query: 341 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2249 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2305
Query: 401 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELP--EVRTKP---------- 444
PDP +D + A+FY + + P E+ G+I+I ++ + ++R++
Sbjct: 2306 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITG 2365
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2366 LEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2425
Query: 505 E--VEKR-NSSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ +E R + RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2426 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2485
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2486 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2545
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PSI+QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2546 VLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2605
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2606 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDVTVSPNG 2665
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
VAFV S+R G+LP+ML+EIL TRLMVKQSMK YK + AL R+L+ARQLGLKLIANVT+G
Sbjct: 2666 VAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYKQDRALSRMLNARQLGLKLIANVTFG 2725
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YTAANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G T
Sbjct: 2726 YTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2785
Query: 859 KQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA VT NP PVKLKFEKVY PC+LQTKKRYVGYMYET DQ +P+++AK
Sbjct: 2786 KEQSFKIGQEIAEAVTATNPRPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKEPVFDAK 2845
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2846 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLVEGKASIQDFIFAKEY 2905
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG Y+PGACVPAL L R+ + D R+EPRV ERVPYVI+ G PGLPLI+L++ P E+L
Sbjct: 2906 RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIIYGTPGLPLIQLIRRPAEVL 2965
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
QD +LRLN+ YYIT+ I+PPL R F L+G V WY+ LPR S +K TI
Sbjct: 2966 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYQELPRIQKATSSSRSELEGRKGTI 3025
Query: 1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
SQYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C G
Sbjct: 3026 SQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAIILNQEIRELERKQEQLIKICRNCTG 3083
Query: 1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
+ C+SL+CPVL++ +++ R+L + Y+ L D
Sbjct: 3084 SFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3120
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1
SV=2
Length = 3130
Score = 946 bits (2445), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 451/878 (51%), Positives = 641/878 (73%), Gaps = 30/878 (3%)
Query: 341 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
+ TP++ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2257 VNTPQK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLE 2313
Query: 401 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESEL--PEVRTKP---------- 444
PDP +D + A+FY + + P E+ G+I+I ++ + ++R +
Sbjct: 2314 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVFSQDIRYQTPLLIRSGITG 2373
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L + +SR+
Sbjct: 2374 LEVTYAADEKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQRAAALSIDLCRMISRVP 2433
Query: 505 E--VEKR-NSSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ +E R + RDE + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2434 DDKIENRFAAERDEYGSYTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2493
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2494 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2553
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2554 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2613
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2614 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQVRHDITVSPNG 2673
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
VAFV S+R G+LP+ML+EIL TR MVKQSMK YK + AL R+L ARQLGLKLIANVT+G
Sbjct: 2674 VAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFG 2733
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YT+ANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G T
Sbjct: 2734 YTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2793
Query: 859 KQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA VT NP PVKLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AK
Sbjct: 2794 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2853
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2854 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEY 2913
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG YKPGACVPAL L R+ + D R+EP+V ERVPYVI+ G PG+PLI+LV+ P E+L
Sbjct: 2914 RGSFSYKPGACVPALELTRKMLTYDRRSEPQVGERVPYVIIYGTPGVPLIQLVRRPVEVL 2973
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNE-RKKKST 1097
QD +LRLN+ YYIT+ I+PPL R F L+G V WY LPR +H S +E +K T
Sbjct: 2974 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYHELPR-IHKATSSSRSEPEGRKGT 3032
Query: 1098 ISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCV 1157
ISQYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C
Sbjct: 3033 ISQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAVILNQEIRELERQQEQLVKICKNCT 3090
Query: 1158 GRSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
G + C+SL+CPVL++ +++ R+L + Y+ L D
Sbjct: 3091 GCFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3128
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1
Length = 1504
Score = 609 bits (1570), Expect = e-173, Method: Compositional matrix adjust.
Identities = 345/827 (41%), Positives = 496/827 (59%), Gaps = 34/827 (4%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLY--TCPPEEDRKV-GIILIGQESELPEV 440
LT L +EIHA +R+ PDPA DEV I + L T P + D GI+++ + SE
Sbjct: 667 LTHLTLEIHANTRSDKIPDPAIDEVSMIIWCLEEETFPLDLDIAYEGIMIVHKASEDSTF 726
Query: 441 RTK------PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER-GYVLG 493
TK I + F +E E+F + V DPDIL G+EI SWGY++ER +
Sbjct: 727 PTKIQHCINEIPVMFYESEFEMFEALTDLVLLLDPDILSGFEIHNFSWGYIIERCQKIHQ 786
Query: 494 LNLNQELSRIT-EVE-KRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMY 551
++ +EL+R+ +++ K + + ++ + + GR +IN+WR LR +VNL YT E+ +
Sbjct: 787 FDIVRELARVKCQIKTKLSDTWGYAHSSGIMITGRHMINIWRALRSDVNLTQYTIESAAF 846
Query: 552 HVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHY-LIRVTGIIRLIEQLDFIGRTSEMAR 610
++LH+R+P S++ LT W + + TV +Y L R I+L+ + D+I R E AR
Sbjct: 847 NILHKRLPHFSFESLTNMWNAKKSTTELKTVLNYWLSRAQINIQLLRKQDYIARNIEQAR 906
Query: 611 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 670
L GI F+ V RGSQF+VES ++R+ + +F+ +SP K +A E +PL++EPES
Sbjct: 907 LIGIDFHSVYYRGSQFKVESFLIRICKSESFILLSPGKKDVRKQKALECVPLVMEPESAF 966
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 730
Y P+IVLDFQSLYPS++I YNYC+ST +GRV + ++++ G ++ L L+
Sbjct: 967 YKSPLIVLDFQSLYPSIMIGYNYCYSTMIGRVREINLTEN-NLGVSKFSLPRNILALLKN 1025
Query: 731 KLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY-KSNAALQRVLHARQLGL 789
+TI+P+GV + S+R L KML +ILD R+M+K++M E N L+R+L+ +QL L
Sbjct: 1026 DVTIAPNGVVYAKTSVRKSTLSKMLTDILDVRVMIKKTMNEIGDDNTTLKRLLNNKQLAL 1085
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDS 849
KL+ANVTYGYT+A+FSGRMPC ++ DS+V GRETL+KAI+ + W +VVYGDTDS
Sbjct: 1086 KLLANVTYGYTSASFSGRMPCSDLADSIVQTGRETLEKAIDIIEKDETWNAKVVYGDTDS 1145
Query: 850 MFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETAD 909
+FV PGKT EAF IG +A VT NNP P+ LKFEKVY P IL +KKRYVG+ YE+
Sbjct: 1146 LFVYLPGKTAIEAFSIGHAMAERVTQNNPKPIFLKFEKVYHPSILISKKRYVGFSYESPS 1205
Query: 910 QDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISV 969
Q PI++AKGIETVRRDG PA KI++K + LLF+TKDLS +K+Y++ +F KI G++S
Sbjct: 1206 QTLPIFDAKGIETVRRDGIPAQQKIIEKCIRLLFQTKDLSKIKKYLQNEFFKIQIGKVSA 1265
Query: 970 QDMTFAKEYRGQAGYKPGACVPALS-LARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLI 1028
QD FAKE + A YK PA + + ++ + D RAEP+ ER+PY++V G G L
Sbjct: 1266 QDFCFAKEVKLGA-YKSEKTAPAGAVVVKRRINEDHRAEPQYKERIPYLVVKGKQGQLLR 1324
Query: 1029 KLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSV 1088
+ SP E L+ +L L+SEYYI +++IPPL+R F L+G V W + + + +
Sbjct: 1325 ERCVSPEEFLEGENLELDSEYYINKILIPPLDRLFNLIGINVGNWAQEIVKSKRASTTTT 1384
Query: 1089 LNERKKKSTISQYFASVNCVCCNQMTQN--NKGVCDACLNQTQLLGTCLYYKIQAWQRSQ 1146
K I++ S C C + + +CD CL + K Q+
Sbjct: 1385 -----KVENITRVGTSATCCNCGEELTKICSLQLCDDCLEKRSTTTLSFLIKKLKRQKEY 1439
Query: 1147 DQVNKVCTTCVGRSTS-----ND-----CISLDCPVLYRKTQITRDL 1183
+ VC TC R TS ND C S DCPV Y + + R L
Sbjct: 1440 QTLKTVCRTCSYRYTSDAGIENDHIASKCNSYDCPVFYSRVKAERYL 1486
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 565 bits (1457), Expect = e-160, Method: Compositional matrix adjust.
Identities = 313/813 (38%), Positives = 476/813 (58%), Gaps = 26/813 (3%)
Query: 386 VLAVEIHAISRALLKPDPAYDEVKAIFY-YLYTCPPEEDRKVGIILIGQESELPEV-RTK 443
+LA+E+ S L PDP D ++ F+ Y +VG I++ + + R+
Sbjct: 653 ILALELFCCSHGGLTPDPTKDSIECCFWAYQEDVNSSMIDRVGFIVVDKSASNSSFGRSF 712
Query: 444 P-IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQELS 501
P + V++E EL + I RQ DP I+ GYE+ SWGYL+ER Y +L ++LS
Sbjct: 713 PSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASYRFNYDLPEQLS 772
Query: 502 RITEVEKRNSSRDE-----VKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
R+ K N ++ E + + + GR V+N+WR+LR EVNL +Y+ EN++ ++ +
Sbjct: 773 RLKCTSKANFAKKENAWKYTTTSSINIVGRHVLNIWRILRGEVNLLNYSLENVVLNIFKK 832
Query: 557 RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 616
+ P ++ W+ K + + + L R + ++ + + E AR+ GI F
Sbjct: 833 QTPYYNQADKVHLWQSSRFHEKQILLNYMLNRTRYCLEILSACAIVTKIREQARIIGIDF 892
Query: 617 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 676
V+SRGSQF+VESIM R+++ N++ SPS KQ A A E+LPL++EP+S LY +P++
Sbjct: 893 MSVISRGSQFKVESIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNNPVV 952
Query: 677 VLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP 736
VLDFQSLYPS+IIAYN C+STCLG V+ + F N +I +L ++ + ISP
Sbjct: 953 VLDFQSLYPSIIIAYNLCYSTCLGPVKIVNGKVKLGFMFHSSNPNIVNL--IKNDVYISP 1010
Query: 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVT 796
+G A+V +++R +L KML+E+++TR MVK+ MK+ S+ + +VL++RQL LKLIANVT
Sbjct: 1011 NGYAYVKENVRKSLLAKMLEELIETRNMVKRGMKDCDSDY-VNKVLNSRQLALKLIANVT 1069
Query: 797 YGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPG 856
YGYT+A+FSGRMPC E+ D++V GRE L ++E +N +VVYGDTDS+FV PG
Sbjct: 1070 YGYTSASFSGRMPCSEIADTIVETGREILSYSLEYINTLDFCHAKVVYGDTDSLFVELPG 1129
Query: 857 KTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYE 916
TK++AF+IG+++AN +T+ P+P++LKFEK+Y PC L KKRYVG+ +E+ Q PI+E
Sbjct: 1130 ATKEQAFDIGQQLANNITSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESVSQKAPIFE 1189
Query: 917 AKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAK 976
AKGIETVRRDG P ++L++ L +LF+TKDLS VK+ + +I+SG + V D F+K
Sbjct: 1190 AKGIETVRRDGTPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFCFSK 1249
Query: 977 EYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYE 1036
E R + + P +AR+ + DPR EP+ ERVPY+I++ APG L +P E
Sbjct: 1250 EVRLEKYKELSTAPPGAVMARRLMTKDPRREPQYGERVPYLIIAAAPGTTLANRSVAPEE 1309
Query: 1037 LLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPR-KLHVYLPSVLNERKKK 1095
L S +L+ YYI +IPPL+R LLG WY +P+ + + L + +K
Sbjct: 1310 FLSSSFSQLDINYYINNSLIPPLDRFLNLLGASAQSWYHEMPKPRTSLKLTETVKGGIQK 1369
Query: 1096 STISQYFASVNCVCCNQMTQNN--------KGVCDACLNQTQLLGTCLYYKIQAWQRSQD 1147
T+ + C C +NN +C CL + + A+ +
Sbjct: 1370 KTLDTFLMEKLCSSC---LKNNIEIIPDKINSLCSDCLKNPCATISKAVTQHNAYNKKLS 1426
Query: 1148 QVNKVCTTCVGRSTSND--CISLDCPVLYRKTQ 1178
+ +C C S+S+ C S C V Y + +
Sbjct: 1427 LLFDICRGCSKLSSSDPVLCKSNSCKVYYDRAK 1459
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 298 bits (763), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 237/836 (28%), Positives = 393/836 (47%), Gaps = 78/836 (9%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P
Sbjct: 309 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL------RPCAPI 362
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER------------GY 490
++ E++L + +R DPD++ GY I+ YL+ R G
Sbjct: 363 LGAKVQSYEREEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGR 422
Query: 491 VLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIM 550
V+GL N R + + R + R + K + M GR+ +++ ++L E L+SYT +
Sbjct: 423 VIGLRSN---IRESSFQSRQTGRRDSKV--VSMVGRVQMDMLQVLLREYKLRSYTLNAVS 477
Query: 551 YHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMA 609
+H L E+ ++T + + V Y ++ + +RL+E+L + EMA
Sbjct: 478 FHFLGEQKEDVQHSIITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMA 535
Query: 610 RLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESR 669
R+ G+ +LSRG Q +V S +LR + + P +K + ++EP
Sbjct: 536 RVTGVPLGYLLSRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGGEDYTGAT--VIEPLKG 591
Query: 670 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNVSIRSLKK 727
Y PI LDF SLYPS+++A+N C++T L G + LG+++
Sbjct: 592 YYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTED----------------- 634
Query: 728 LQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQL 787
+ +P+G FV S+R G+LP++L+ +L R K + + +++ ++VL RQL
Sbjct: 635 ---QFIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAK-ETDPLRRQVLDGRQL 690
Query: 788 GLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIE------TVNNTSKWQCR 841
LK+ AN YG+T A GR+PC+E+ SV GR+ ++K + TV N +
Sbjct: 691 ALKVSANSVYGFTGAQV-GRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVENGYSTSAK 749
Query: 842 VVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYV 901
VVYGDTDS+ + EA +G+E A+ V+ + P+P++L+FEKVY P +L +KKRY
Sbjct: 750 VVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYA 809
Query: 902 GYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSK 961
G ++ + + KG+E VRRD CP V+ ++ SL L +D S + + S
Sbjct: 810 GLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAHAQDVISD 869
Query: 962 IISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVS 1020
++ RI + + KE R A Y + LA + DP + P + +RVPYVI+S
Sbjct: 870 LLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDRVPYVIIS 927
Query: 1021 GAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN---L 1077
A G+ + P +L+ SL ++++YY+ + + PL R F P+L + L
Sbjct: 928 AAKGVAAYMKSEDPLFVLE-HSLPIDTQYYLEQQLAKPLLRIF----EPILGEGRAEAVL 982
Query: 1078 PRKLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKGVCDACLNQTQLLGTCLY 1136
R H +VL K + + N C+ C + + VC C + L
Sbjct: 983 LRGDHTRCKTVLT--GKVGGLLAFAKRRNCCIGCRTVLSHQGAVCKFCQPRESELYQKEV 1040
Query: 1137 YKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYVL 1190
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +L
Sbjct: 1041 SHLSALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQERLL 1095
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 297 bits (761), Expect = 3e-79, Method: Compositional matrix adjust.
Identities = 226/759 (29%), Positives = 383/759 (50%), Gaps = 60/759 (7%)
Query: 449 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK 508
+ ++EK L + E + + DPD L GY I Y+L RG L L + L RI V
Sbjct: 364 WFNDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKFLGRIKNVAS 423
Query: 509 --RNSSRDEVK-----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLH 561
++SS + ++ + GRI +++ L++ + L+SYT + + L E+
Sbjct: 424 TVKDSSFSSKQFGTHETKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDV 483
Query: 562 SWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII--RLIEQLDFIGRTSEMARLFGIQFYEV 619
+ ++ K + Y I+ G++ RLI++L FI EMAR+ G F +
Sbjct: 484 HYSIMNDLQNESPESRKRIAT--YCIK-DGVLPLRLIDKLLFIYNYVEMARVTGTPFVYL 540
Query: 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 679
L+RG Q +V S + R + N+V PS + + +LEP Y +PI LD
Sbjct: 541 LTRGQQIKVTSQLYRKCKELNYVI--PSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLD 598
Query: 680 FQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGV 739
F SLYPS++IA+N C+ST L + H VSD + + +Q K + +
Sbjct: 599 FASLYPSIMIAHNLCYST-LIKSNH-EVSD----------LQNDDITTIQGK-----NNL 641
Query: 740 AFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGY 799
FV K+++ GILP +++E+++ R VK +K K+N + VL+ RQL LK+ AN YGY
Sbjct: 642 KFVKKNVKKGILPLIVEELIEARKKVKLLIKNEKNNIT-KMVLNGRQLALKISANSVYGY 700
Query: 800 TAANFSGRMPCVEVGDSVVSKGRETLQKAIETV------NNTSKWQCRVVYGDTDSMFVL 853
T A+ G++PC+EV S+ + GR ++K E V +N + V+YGDTDS+ V
Sbjct: 701 TGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSVMVK 760
Query: 854 APGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKP 913
+EA +GK+ A ++ +P+KL+FEKVY P +L KKRY G +Y ++
Sbjct: 761 FGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDK 820
Query: 914 IYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMT 973
+ + KGIETVRRD C + ++++ L L K+L+ EY + + ++++ I + +
Sbjct: 821 M-DCKGIETVRRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKSKIKELLTNNIDMSLLV 879
Query: 974 FAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKS 1033
K G+ Y+ +P + LA++ D P V +RV Y+IV G G + +
Sbjct: 880 VTKSL-GKTDYETR--LPHVELAKKLKQRDSATAPNVGDRVSYIIVKGVKGQAQYERAED 936
Query: 1034 PYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERK 1093
P +L D++L ++ +Y+ I PL R F + ++ +L H ++L
Sbjct: 937 PLYVL-DNNLAIDYNHYLD-AIKSPLSRIFEV----IMQNSDSLFSGDHTRHKTILTS-- 988
Query: 1094 KKSTISQYF-ASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKV 1152
++ +S++ SV C+ CN + +C+ C + + KI+ ++ Q++ ++
Sbjct: 989 SQTALSKFLKKSVRCIGCNSSIK-KPPLCNHCKENKEF--SIYMQKIKDFKNKQNEFFQL 1045
Query: 1153 CTTCVGRSTSN-----DCISLDCPVLYRKTQITRDLDQL 1186
T C R N C++ DCP+ YR+ +I +D+ L
Sbjct: 1046 WTEC-QRCQGNLHVDVICMNRDCPIFYRRAKIKKDIANL 1083
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 295 bits (755), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 233/834 (27%), Positives = 392/834 (47%), Gaps = 74/834 (8%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P
Sbjct: 306 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL------RPCAPI 359
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
++ E++L + + DPD++ GY I+ YL+ R L ++ L R
Sbjct: 360 LGAKVQSYEREEDLLQAWPNFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGR 419
Query: 503 ITEVEKRNSSRDEVKNTQ---------LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV 553
+T + R++ RD ++ + M GR+ +++ ++L E L+SYT + +H
Sbjct: 420 VTGL--RSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREHKLRSYTLNAVSFHF 477
Query: 554 LHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLF 612
L E+ ++T + + V Y +R + +RL+E+L + EMAR+
Sbjct: 478 LGEQKEDVQHSIITDLQNGNEQTRRRLAV--YCLRDAFLPLRLLERLMVLVNNVEMARVT 535
Query: 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYT 672
G+ +LSRG Q +V S +LR + + P +K + ++EP Y
Sbjct: 536 GVPLGYLLSRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYD 591
Query: 673 DPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQ 729
PI LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 592 VPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF------------------ 633
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789
+P+G FV S+R G+LP++L+ +L R K + + +++ ++VL RQL L
Sbjct: 634 ---IKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ-ETDPLRRQVLDGRQLAL 689
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIE------TVNNTSKWQCRVV 843
K+ AN YG+T A G++PC+E+ SV GR+ ++K + T+ N +VV
Sbjct: 690 KVSANSVYGFTGAEV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTLENGYNANAKVV 748
Query: 844 YGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGY 903
YGDTDS+ + EA +G+E AN V+++ P+P++L+FEKVY P +L +KKRY G
Sbjct: 749 YGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGL 808
Query: 904 MYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKII 963
++ + + KG+E VRRD CP V+ ++ SL + +D + + S ++
Sbjct: 809 LFSSQPDTHDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKDVISDLL 868
Query: 964 SGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGA 1022
RI + + KE R A Y + LA + DP + P + +RVPYVI+ A
Sbjct: 869 CNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDRVPYVIIGAA 926
Query: 1023 PGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN---LPR 1079
G+ + P +L+ SL ++++YY+ + + PL R F P+L + L R
Sbjct: 927 KGVAAYMKSEDPLFVLE-HSLPIDTQYYLGQQLAKPLLRIF----EPILGEGRAESVLLR 981
Query: 1080 KLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKGVCDACLNQTQLLGTCLYYK 1138
H +VL K + + N C+ C + + VC+ C + L
Sbjct: 982 GDHTRCKTVLT--SKVGGLLAFTKRRNCCIGCRSVINHQGAVCEFCQPRESELYQKEVSH 1039
Query: 1139 IQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYVL 1190
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +L
Sbjct: 1040 LNALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQERLL 1092
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1 PE=1
SV=2
Length = 1105
Score = 295 bits (755), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 232/834 (27%), Positives = 392/834 (47%), Gaps = 74/834 (8%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P
Sbjct: 308 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL------RPCAPI 361
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
++ E++L + + + DPD++ GY I+ YL+ R L ++ L R
Sbjct: 362 LGAKVQSYEREEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGR 421
Query: 503 ITEVEKRNSSRDEVKNTQ---------LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV 553
+T + R++ RD ++ + M GR+ +++ ++L E L+SYT + +H
Sbjct: 422 VTGL--RSNIRDSSFQSRQVGRRDSKVISMVGRVQMDMLQVLLREHKLRSYTLNAVSFHF 479
Query: 554 LHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLF 612
L E+ ++T + + V Y ++ + +RL+E+L + EMAR+
Sbjct: 480 LGEQKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEMARVT 537
Query: 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYT 672
G+ +L+RG Q +V S +LR + + P +K + ++EP Y
Sbjct: 538 GVPLGYLLTRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGSEDYTGAT--VIEPLKGYYD 593
Query: 673 DPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQ 729
PI LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 594 VPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF------------------ 635
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789
+P+G FV S+R G+LP++L+ +L R K + + +++ ++VL RQL L
Sbjct: 636 ---IKTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ-ETDPLRRQVLDGRQLAL 691
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIE------TVNNTSKWQCRVV 843
K+ AN YG+T A G++PC+E+ SV GR+ ++K + TV N +VV
Sbjct: 692 KVSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYDANAKVV 750
Query: 844 YGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGY 903
YGDTDS+ + EA +G+E AN V+++ P+P++L+FEKVY P +L +KKRY G
Sbjct: 751 YGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGL 810
Query: 904 MYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKII 963
++ + + KG+E VRRD CP V+ ++ SL + +D + + S ++
Sbjct: 811 LFSSRSDAHDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKDVISDLL 870
Query: 964 SGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGA 1022
RI + + KE R A Y + LA + DP + P + +RVPYVI+ A
Sbjct: 871 CNRIDISQLVITKELTRAAADY--AGKQAHVELAERMRKRDPGSAPSLGDRVPYVIIGAA 928
Query: 1023 PGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN---LPR 1079
G+ + P +L+ SL ++++YY+ + + PL R F P+L + L R
Sbjct: 929 KGVAAYMKSEDPLFVLE-HSLPIDTQYYLEQQLAKPLLRIF----EPILGEGRAESVLLR 983
Query: 1080 KLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKGVCDACLNQTQLLGTCLYYK 1138
H +VL K + + N C+ C + + VC C + L
Sbjct: 984 GDHTRCKTVLT--SKVGGLLAFTKRRNCCIGCRSVIDHQGAVCKFCQPRESELYQKEVSH 1041
Query: 1139 IQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYVL 1190
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +L
Sbjct: 1042 LNALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQERLL 1094
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1
SV=2
Length = 1107
Score = 295 bits (754), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 230/832 (27%), Positives = 390/832 (46%), Gaps = 70/832 (8%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL------RPCAPI 363
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
++ E++L + +R DPD++ GY I+ YL+ R L + L R
Sbjct: 364 LGAKVQSYEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGR 423
Query: 503 I---------TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV 553
+ + + + + R + K + M GR+ +++ ++L E L+SYT + +H
Sbjct: 424 VAGLCSNIRDSSFQSKQTGRRDTKV--VSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHF 481
Query: 554 LHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLF 612
L E+ ++T + + V Y ++ + +RL+E+L + EMAR+
Sbjct: 482 LGEQKEDVQHSIITDLQNGNDQTRRRLAV--YCLKDAYLPLRLLERLMVLVNAVEMARVT 539
Query: 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYT 672
G+ +LSRG Q +V S +LR + + P +K + ++EP Y
Sbjct: 540 GVPLSYLLSRGQQVKVVSQLLRQAMHEGLLM--PVVKSEGGEDYTGAT--VIEPLKGYYD 595
Query: 673 DPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 730
PI LDF SLYPS+++A+N C++T L G + LG+++
Sbjct: 596 VPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTED-------------------- 635
Query: 731 KLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLK 790
+ +P+G FV S+R G+LP++L+ +L R K + + +++ ++VL RQL LK
Sbjct: 636 QFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAK-ETDPLRRQVLDGRQLALK 694
Query: 791 LIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIE------TVNNTSKWQCRVVY 844
+ AN YG+T A G++PC+E+ SV GR+ ++K + TV N +VVY
Sbjct: 695 VSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVVY 753
Query: 845 GDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYM 904
GDTDS+ + EA +G+E A+ V+ + P+P++L+FEKVY P +L +KKRY G +
Sbjct: 754 GDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLL 813
Query: 905 YETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIIS 964
+ + + KG+E VRRD CP V+ ++ SL L +D + + S ++
Sbjct: 814 FSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVISDLLC 873
Query: 965 GRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPG 1024
RI + + KE A G + LA + DP + P + +RVPYVI+S A G
Sbjct: 874 NRIDISQLVITKELTRAASDYAGKQA-HVELAERMRKRDPGSAPSLGDRVPYVIISAAKG 932
Query: 1025 LPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN---LPRKL 1081
+ + P +L+ SL ++++YY+ + + PL R F P+L + L R
Sbjct: 933 VAAYMKSEDPLFVLE-HSLPIDTQYYLEQQLAKPLLRIF----EPILGEGRAEAVLLRGD 987
Query: 1082 HVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQ 1140
H +VL K + + N C+ C + + VC+ C + L +
Sbjct: 988 HTRCKTVLT--GKVGGLLAFAKRRNCCIGCRTVLSHQGAVCEFCQPRESELYQKEVSHLN 1045
Query: 1141 AWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYVL 1190
A + ++ C C G S D C S DCP+ Y + ++ +DL+ +L
Sbjct: 1046 ALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQEQLL 1096
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 293 bits (750), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 245/844 (29%), Positives = 404/844 (47%), Gaps = 106/844 (12%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +++ +I R + PDP+ D V I + + + S++ V T
Sbjct: 294 LRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRNVFCVDTCSQI--VGT- 350
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
Q++ N+ E+ S + + VR DPD+LIGY I YLL+R L ++ L RI
Sbjct: 351 --QVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGRI 408
Query: 504 ---------TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL 554
T + E K T + PGR+ +++ ++++ + L+SY+ + L
Sbjct: 409 HNFFSVAKETTFSSKAYGTRESKTTSI--PGRLQLDMLQVMQRDFKLRSYSLNAVCSQFL 466
Query: 555 HERIPLHSWKLLT----CWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMAR 610
E+ + ++T + R L + + YL + RL+++L +EMAR
Sbjct: 467 GEQKEDVHYSIITDLQNGTADSRRRLAIYCLKDAYLPQ-----RLMDKLMCFVNYTEMAR 521
Query: 611 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 670
+ G+ F +L+RG Q +V S + R + ++ V P+I+ E +I EP
Sbjct: 522 VTGVPFNFLLARGQQIKVISQLFRKALQHDLVV--PNIRVNGTDEQYEGATVI-EPIKGY 578
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 730
Y PI LDF SLYPS++ A+N C++T L D N + L KL+Q
Sbjct: 579 YDTPIATLDFSSLYPSIMQAHNLCYTTLL-----------------DSNTA--ELLKLKQ 619
Query: 731 KL--TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLG 788
+ +++P+G FV +R G+LP +L ++L+ R K +K+ +++ + VL RQL
Sbjct: 620 DVDYSVTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKK-ETDPFKKAVLDGRQLA 678
Query: 789 LKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVN------NTSKWQCRV 842
LK+ AN YG+T A +GR+PC+ + SV S GR+ ++K + V N V
Sbjct: 679 LKVSANSVYGFTGAT-NGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVV 737
Query: 843 VYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVG 902
+YGDTDS+ V KT EA ++G+E AN V++ P P+KL+FEKVY P +L +KKRY G
Sbjct: 738 IYGDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAG 797
Query: 903 YMYETADQ-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSK 961
+ D DK ++KGIETVRRD CP VS ++ +L + +D+ + + +K S
Sbjct: 798 LFWTRTDTYDK--MDSKGIETVRRDNCPLVSYVIDTALRKMLIDQDVEGAQLFTKKVISD 855
Query: 962 IISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSG 1021
++ +I + + K + Y A + + LA + D + P + +RV YVI+ G
Sbjct: 856 LLQNKIDMSQLVITKAL-SKTDY--AAKMAHVELAERMRKRDAGSAPAIGDRVAYVIIKG 912
Query: 1022 APGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLP------WYK 1075
A G + P +L++ ++ ++++YY+ + PL R F P+L +
Sbjct: 913 AQGDQFYMRSEDPIYVLEN-NIPIDAKYYLENQLSKPLLRIF----EPILGEKASSLLHG 967
Query: 1076 NLPRKLHVYLPSVLNERKKKSTISQYFASV-NCVCCNQMTQNNK-GVCDACLNQTQLLGT 1133
+ R + + PSV I ++ V C+ C + K +C+ CLN++ L
Sbjct: 968 DHTRTISMAAPSV-------GGIMKFAVKVETCLGCKAPIKKGKTALCENCLNRSAEL-- 1018
Query: 1134 CLYYKIQAWQRSQDQVNKV----------CTTCVGRSTSND--CISLDCPVLYRKTQITR 1181
+QR QVN + C C G S D C S DCP+ Y + +
Sbjct: 1019 --------YQRQVAQVNDLEVRFARLWTQCQRCQG-SMHQDVICTSRDCPIFYMRIAEHK 1069
Query: 1182 DLDQ 1185
L Q
Sbjct: 1070 KLQQ 1073
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 292 bits (747), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 231/775 (29%), Positives = 373/775 (48%), Gaps = 85/775 (10%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 511
NEK L + E VR+ DPDI+ GY I Y+L+R VL L L R + EK +
Sbjct: 343 NEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR--QKEKGSV 400
Query: 512 SRDEV---------KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL-------- 554
RD N + + GRI+ ++ +++ + L+SYT ++ Y L
Sbjct: 401 VRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVE 460
Query: 555 HERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGI 614
H IP L + R L ++ + YL +RL+++L I EMAR+ G+
Sbjct: 461 HNIIP----DLQRGDEQTRRRLAQYCLKDAYLP-----LRLLDKLMSIINYIEMARVTGV 511
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+L++G Q ++ S+MLR + NNF P I+ + +++P Y +P
Sbjct: 512 PMNFLLTKGQQIKILSMMLRRCKQNNFFL--PVIEANSGDGEGYEGATVIDPIRGFYNEP 569
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTI 734
I LDF SLYPS++IA+N C++T L + + D IR+
Sbjct: 570 IATLDFASLYPSIMIAHNLCYTTLLKSPQGVENEDY-----------IRT---------- 608
Query: 735 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIAN 794
PSG F KS R G+LP++L++IL R K MK K + V + RQL LK+ AN
Sbjct: 609 -PSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFK-RMVYNGRQLALKISAN 666
Query: 795 VTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSK-----WQC----RVVYG 845
YG+T A G++PC+E+ SV + GR+ + V K +C +V+YG
Sbjct: 667 SVYGFTGATV-GKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALDGKCPADAKVIYG 725
Query: 846 DTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMY 905
DTDS+ V +T +A EIG + A V+ P+KL+FEKVY P +L KKRY G +
Sbjct: 726 DTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYLLINKKRYAGLYF 785
Query: 906 ETAD-QDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIIS 964
D DK + KG+ETVRRD CP V+K+L L L +D ++ ++ S ++
Sbjct: 786 TKPDVHDK--MDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSALDFAKRTISDLLC 843
Query: 965 GRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPG 1024
+I + + +KE ++G K A + LA + D + PR+ +RVPYV V+ A
Sbjct: 844 NKIDISLLIISKELT-KSGDKYQAKQAHVELAARMKKRDAGSAPRLGDRVPYVFVAAAKN 902
Query: 1025 LPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLP--WYKNLPRKLH 1082
+P + + P +LQ+ ++ L++++Y+T + PL R F P+L K L H
Sbjct: 903 VPAYERAEDPTFVLQN-NIPLDTKHYLTNQLAKPLARIF----EPILGDRAEKILVEGEH 957
Query: 1083 VYLPSVLNERKKKSTISQYFASVNCVCCNQM---TQNNKGVCDACLNQTQLLGTCLYYKI 1139
+ +V+ + K + S C+ C + ++ VC C + L T ++
Sbjct: 958 TRVRTVV-QSKVGGLAAFTTKSATCLGCKSVLPRAESENAVCKHCEPK---LPTIFASRM 1013
Query: 1140 QAWQRSQDQVNKVCTTCVGRSTSN----DCISLDCPVLYRKTQITRDLDQLSYVL 1190
++ ++ T C + + +C + DCP+ Y + ++ +L + S V+
Sbjct: 1014 NTMHELENHFGRLWTECQNCAKTMQDKVNCSARDCPIYYMREKVRNELSEASAVI 1068
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus GN=Pold1
PE=2 SV=1
Length = 1103
Score = 291 bits (746), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 230/833 (27%), Positives = 390/833 (46%), Gaps = 72/833 (8%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P
Sbjct: 306 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL------RPCAPI 359
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
++ E++L + + DPD++ GY I+ YL+ R L ++ L R
Sbjct: 360 LGAKVQSYEREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGR 419
Query: 503 ITEVEKRNSSRDEVKNTQ---------LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV 553
+T + R++ RD ++ + M GR+ +++ ++L E L+SYT + +H
Sbjct: 420 VTGL--RSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHF 477
Query: 554 LHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLF 612
L E+ ++T + + V Y ++ + +RL+E+L + EMAR+
Sbjct: 478 LGEQKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEMARVT 535
Query: 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYT 672
G+ +LSRG Q +V S +LR + + P +K + ++EP Y
Sbjct: 536 GVPLGYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYD 591
Query: 673 DPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQ 729
PI LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 592 VPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF------------------ 633
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789
+P+G FV S+R G+LP++L+ +L R K + + +++ ++VL RQL L
Sbjct: 634 ---IKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ-ETDPLRRQVLDGRQLAL 689
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIE------TVNNTSKWQCRVV 843
K+ N YG+T A G++PC+E+ SV GR+ ++K + T+ N +VV
Sbjct: 690 KVSPNSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLENGYDANAKVV 748
Query: 844 YGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGY 903
YGDTDS+ + EA +G+E AN V+++ P+P++L+FEKVY P +L +KKRY G
Sbjct: 749 YGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLLISKKRYAGL 808
Query: 904 MYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKII 963
++ + + KG+E VRRD CP V+ ++ SL + +D + + S ++
Sbjct: 809 LFSSRSDAHDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAHAKDVISDLL 868
Query: 964 SGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGA 1022
RI + + KE R A Y + LA + DP + P + +RVPYVI+ A
Sbjct: 869 CNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPNLGDRVPYVIIGAA 926
Query: 1023 PGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN---LPR 1079
G+ + P +L+ SL ++++YY+ + + PL R F P+L + L R
Sbjct: 927 KGVAAYMKSEDPLFVLE-HSLPIDTQYYLEQQLAKPLLRIF----EPILGEGRAESVLLR 981
Query: 1080 KLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKI 1139
H +VL K ++ +C+ C + + VC C + L +
Sbjct: 982 GDHTRCKTVLTS-KVGGLLAFTKRRNSCIGCRSVIDHQGAVCKFCQPRESELYQKEVSHL 1040
Query: 1140 QAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYVL 1190
A + ++ C C G S D C S DCP+ Y + ++ +DL+ +L
Sbjct: 1041 NALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQERLL 1092
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 290 bits (741), Expect = 7e-77, Method: Compositional matrix adjust.
Identities = 218/750 (29%), Positives = 353/750 (47%), Gaps = 72/750 (9%)
Query: 464 VRQW-------DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI-TEVEKRNSSRDE 515
+R+W DPD++IGY I YL+ R L + L RI T + K S+R
Sbjct: 383 LREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPEFALLGRIKTTISKIKSTRFS 442
Query: 516 VKN------TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 569
N ++ MPGR +L + ++ + L SY+ N+ H L E+ + +++
Sbjct: 443 SSNLGTRESKEISMPGRTQFDLMQAIQRDHKLTSYSLNNVSAHFLKEQKEDVHFSIISDL 502
Query: 570 WEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV 628
+ + V Y I+ + +RL+++L + +EMAR+ G+ +L RG +V
Sbjct: 503 QNGTDDDRRRLAV--YCIKDAVLPMRLLDKLMILINYTEMARVTGVPLSYLLGRGEGIKV 560
Query: 629 ESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVI 688
S + R + + NF+ P+ K + +++EP Y PI LDF SLYPS++
Sbjct: 561 LSQLYRKAMVENFLI--PTYKVTGKGEKFQG-AIVIEPTPGFYDTPIATLDFTSLYPSIM 617
Query: 689 IAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKL-TISPSGVAFVDKSIR 747
+A+N C+ST L S KKL ++ T +P G F+ +
Sbjct: 618 MAHNLCYSTLL---------------------SAEEAKKLPPEIYTTTPFGDHFIKSDTK 656
Query: 748 CGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGR 807
G+LP++L+E+L R K +K K + + VL RQL LK+ AN YG+T A G+
Sbjct: 657 KGLLPRILEELLSARKKAKDELKNEK-DPFKRAVLDGRQLALKISANSVYGFTGARV-GK 714
Query: 808 MPCVEVGDSVVSKGRETLQKAIE------TVNNTSKWQCRVVYGDTDSMFVLAPGKTKQE 861
+PC+E+ SV S GRE L K + T+ N K ++YGDTDS+ V KT E
Sbjct: 715 LPCLEISRSVTSFGREMLDKTKKIVEERYTIANGYKHDAVIIYGDTDSVMVKFGVKTVAE 774
Query: 862 AFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETAD-QDKPIYEAKGI 920
A E+G++ A VT P+ L FEKVY P +L KK+Y G + D D+ + KG+
Sbjct: 775 AMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLLMAKKKYAGLYWTKPDIHDR--MDVKGL 832
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAK---- 976
E VRRD C V ++ L + KDL +EY + S ++ R+ + + K
Sbjct: 833 EMVRRDTCLLVRNVVSTILKKILIEKDLKSAEEYTKSVISDLLQNRLDLSMLVITKALSK 892
Query: 977 -EYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+Y+G+ + LAR+ DP P + +RVPYV++ G+ G P+ + + P
Sbjct: 893 TQYKGKVIHN--------ELARKMRARDPATAPNLGDRVPYVVIQGSKGAPIYEKAEDPL 944
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLPWYKNLPRKLHVYLPSVLNERKK 1094
L+ + L L+ +YY+ + + PL R F ++ P L ++ R + S L++ K
Sbjct: 945 YALEHNIL-LDCQYYLDKQLKAPLIRIFKPIMSNPDLIFHGEHTRTIA---QSTLSDNNK 1000
Query: 1095 KSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCT 1154
+ V C ++T C C ++ L K+ + + + C
Sbjct: 1001 GFFGTLKKKKVCMNCPKELTDTESTTCINCQHKEASLYQTSLEKVTSLETKFSEAWTQCQ 1060
Query: 1155 TCVGR-STSNDCISLDCPVLYRKTQITRDL 1183
C G C + DCP+ Y +T++ DL
Sbjct: 1061 RCSGSLHQPVLCSNRDCPIFYMRTKVQLDL 1090
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 286 bits (732), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 222/762 (29%), Positives = 372/762 (48%), Gaps = 73/762 (9%)
Query: 453 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR--- 509
E+++ + E + + DPD++IGY Y+L R LGLN R+ V++
Sbjct: 308 EEDMLMHWKEFITKVDPDVIIGYNTANFDIPYVLNRAKALGLNDFPFFGRLKRVKQEIKD 367
Query: 510 --NSSR--DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 565
SSR +N + + GR+ ++L + ++ E L+SYT ++ H L E+ +
Sbjct: 368 AVFSSRAYGTRENKVVNIDGRMQLDLLQFIQREYKLRSYTLNSVSAHFLGEQKEDVQHSI 427
Query: 566 LTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 624
+T + + V Y ++ + +RL+++L + +EMAR+ G+ F +LSRG
Sbjct: 428 ITDLQNGTKETRRRLAV--YCLKDAFLPLRLLDKLMCLVNYTEMARVTGVPFSYLLSRGQ 485
Query: 625 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 684
Q +V S + R + V P++K E +I EPE Y PI LDF SLY
Sbjct: 486 QIKVISQLFRKCLQEDIVI--PNLKSEGSNEEYEGATVI-EPERGYYDVPIATLDFSSLY 542
Query: 685 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDK 744
PS+++A+N C++T L + SI++ + T +P+G FV
Sbjct: 543 PSIMMAHNLCYTTLLNKN------------------SIKAFGLTEDDYTKTPNGDYFVHS 584
Query: 745 SIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANF 804
++R GILP +L E+L R K +K+ +++ + VL+ RQL LK+ AN YG+T A
Sbjct: 585 NLRKGILPTILDELLTARKKAKADLKK-ETDPFKKDVLNGRQLALKISANSVYGFTGATV 643
Query: 805 SGRMPCVEVGDSVVSKGRETLQKAIETVN------NTSKWQCRVVYGDTDSMFVLAPGKT 858
G++PC+ + SV + GRE ++K V N + +V+YGDTDS+ V +
Sbjct: 644 -GKLPCLAISSSVTAFGREMIEKTKNEVQEYYSKKNGHPYDAKVIYGDTDSVMVKFGYQD 702
Query: 859 KQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
+ ++G+E AN V+ P+KL+FEKVY P +L KKRY G +Y T + + K
Sbjct: 703 LETCMKLGEEAANYVSTKFKNPIKLEFEKVYFPYLLINKKRYAG-LYWTRPEKFDKMDTK 761
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD C V ++ K L + E +D+ + +V++ + ++ RI + + K Y
Sbjct: 762 GIETVRRDNCRLVQNVITKVLEFILEERDVPKAQRFVKQTIADLLQNRIDLSQLVITKAY 821
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
+ + A + LA + DP + P + +RV YVI+ G + + P +L
Sbjct: 822 ---SKHDYSAKQAHVELAERMRKRDPGSAPTLGDRVAYVIIKTG-GDKNYEKSEDPLYVL 877
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYK-------NLPRKLHVYLPSV--L 1089
++ SL ++ +YY+ + + PLER F+ P+L K + R + V P L
Sbjct: 878 EN-SLPIDVKYYLDQQLTKPLERIFI----PILGETKTKELLTGSHTRTIKVAAPKTGGL 932
Query: 1090 NERKKKSTISQYFASVNCVCCNQ-MTQNNKG-VCDACLNQTQ---LLGTCLYYKIQAWQR 1144
KKS + CV C + ++N G +C C+ + L G L ++ +
Sbjct: 933 LRFAKKSEV--------CVSCRTPLKKDNLGALCPNCIKDGKGPDLYGNAL-SQMNYLEN 983
Query: 1145 SQDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQITRDLDQ 1185
++ C C G C + DCP+ Y +T+ +D+ Q
Sbjct: 984 KFSRLWTECQRCQGSLHQEVLCSNKDCPIFYMRTKAQKDVHQ 1025
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 285 bits (730), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 229/756 (30%), Positives = 365/756 (48%), Gaps = 67/756 (8%)
Query: 453 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI--TEVEKRN 510
E+E+ + + +R DPDI+IGY I YL+ER LG+ L R+ + V R+
Sbjct: 370 EREVLLAWRDLIRDVDPDIIIGYNICKFDLPYLIERAATLGIEEFPLLGRVKNSRVRVRD 429
Query: 511 S---SRD----EVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 563
S SR E K T ++ GR +L + + + L SY+ ++ H L E+
Sbjct: 430 STFSSRQQGIRESKETTIE--GRFQFDLIQAIHRDHKLSSYSLNSVSAHFLSEQKEDVHH 487
Query: 564 KLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEV 619
++T E R L + + YL + RL+++L FI EMAR+ G+ +
Sbjct: 488 SIITDLQNGNAETRRRLAVYCLKDAYLPQ-----RLLDKLMFIYNYVEMARVTGVPISFL 542
Query: 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 679
L+RG +V S +LR + N V P+ KQ + +LE + Y PI LD
Sbjct: 543 LARGQSIKVLSQLLRKGKQKNLVL--PNAKQSGSEQGTYEGATVLEARTGFYEKPIATLD 600
Query: 680 FQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGV 739
F SLYPS+++AYN C+ T + + +R L + +T +PSG
Sbjct: 601 FASLYPSIMMAYNLCYCTLVTPED------------------VRKLNLPPEHVTKTPSGE 642
Query: 740 AFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGY 799
FV ++++ GILP++L+E+L R K +KE K + + VL RQL LK+ AN YG+
Sbjct: 643 TFVKQTLQKGILPEILEELLTARKRAKADLKEAK-DPLEKAVLDGRQLALKISANSVYGF 701
Query: 800 TAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNT------SKWQCRVVYGDTDSMFVL 853
T A G++PC+E+ SV S GR+ +++ + V + ++ V+YGDTDS+ V
Sbjct: 702 TGATV-GQLPCLEISSSVTSYGRQMIEQTKKLVEDKFTTLGGYQYNAEVIYGDTDSVMVQ 760
Query: 854 APGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQ-DK 912
+ A +G+E A ++ P+KL+FEKVY P +L KKRY G ++ Q DK
Sbjct: 761 FGVSDVEAAMTLGREAAEHISGTFIKPIKLEFEKVYFPYLLINKKRYAGLLWTNPQQFDK 820
Query: 913 PIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDM 972
+ KGIETVRRD C V ++ +SL + +D+ E V+K S ++ RI + +
Sbjct: 821 --MDTKGIETVRRDNCLLVKNLVTESLNKILIDRDVPGAAENVKKTISDLLMNRIDLSLL 878
Query: 973 TFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVK 1032
K + G LA + D P V +RVPYVI+ A G + +
Sbjct: 879 VITKGLT-KTGDDYEVKSAHGELAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSE 937
Query: 1033 SPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKL--HVYLPSVLN 1090
P +LQ+ ++ ++ YY+ I PL R F PVL KN ++L + S+
Sbjct: 938 DPIYVLQN-NIPIDPNYYLENQISKPLLRIF----EPVL---KNASKELLHGSHTRSISI 989
Query: 1091 ERKKKSTISQYF-ASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQV 1149
S I ++ ++CV C ++ +N +C +C + L ++ + ++
Sbjct: 990 TTPSNSGIMKFAKKQLSCVGC-KVPISNGTLCASCKGREAELYCKNVSQVAELEEVFGRL 1048
Query: 1150 NKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDL 1183
C C G S D C S DCP+ YR+ + +D+
Sbjct: 1049 WTQCQECQG-SLHQDVLCTSRDCPIFYRRMKAQKDM 1083
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 283 bits (723), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 227/756 (30%), Positives = 366/756 (48%), Gaps = 65/756 (8%)
Query: 453 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI--------- 503
E+++ + + +R+ DPDI+IGY I YL+ER VL + L RI
Sbjct: 378 ERDVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEVLKIVEFPILGRIRNSRVRVRD 437
Query: 504 TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP--LH 561
T R E K+ ++ GR+ +L + ++ + L SY+ ++ H L E+ H
Sbjct: 438 TTFSSRQYGMRESKDVAVE--GRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHH 495
Query: 562 SW--KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEV 619
S L E R L + + YL + RL+++L +I EMAR+ G+ +
Sbjct: 496 SIISDLQNGNSETRRRLAVYCLKDAYLPQ-----RLLDKLMYIYNYVEMARVTGVPISFL 550
Query: 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 679
LSRG +V S +LR ++ N V P+IK +A + +LE + Y PI LD
Sbjct: 551 LSRGQSIKVLSQLLRKAKQKNLVI--PNIKGQASGQDTFEGATVLEARAGFYEKPIATLD 608
Query: 680 FQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGV 739
F SLYPS+++AYN C+ T + P LN+ S+ K +PSG
Sbjct: 609 FASLYPSIMMAYNLCYCTLVP-----------PEDARKLNLPPESVNK-------TPSGE 650
Query: 740 AFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGY 799
FV ++ GILP++L+E+L R K +KE K + + VL RQL LK+ AN YG+
Sbjct: 651 TFVKPDVQKGILPEILEELLAARKRAKADLKEAK-DPFERAVLDGRQLALKISANSVYGF 709
Query: 800 TAANFSGRMPCVEVGDSVVSKGRETLQ---KAIE---TVNNTSKWQCRVVYGDTDSMFVL 853
T A G++PC+E+ SV S GR+ ++ K +E T + V+YGDTDS+ V
Sbjct: 710 TGATV-GQLPCLEISSSVTSYGRQMIEHTKKLVEDKFTTLGGYEHNAEVIYGDTDSVMVQ 768
Query: 854 APGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKP 913
T ++A ++G+E A+ ++ P+KL+FEK+Y P +L +KKRY G +Y T +
Sbjct: 769 FGVSTVEDAMKLGREAADYISGTFIKPIKLEFEKIYFPYLLISKKRYAG-LYWTNPEKFD 827
Query: 914 IYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMT 973
+ KGIETVRRD C V ++ + L + +D+ +YV+ S ++ R+ + +
Sbjct: 828 KMDTKGIETVRRDNCLLVKNLVTECLHKILVDRDVPGAVQYVKNTISDLLMNRVDLSLLV 887
Query: 974 FAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKS 1033
K + G + LA + D P V +RVPYVI+ A G + +
Sbjct: 888 ITKGLT-KTGEDYAVKAAHVELAERMRKRDAATAPTVGDRVPYVIIKAAKGAKAYERSED 946
Query: 1034 PYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRK-LHVYLPSVLNER 1092
P +L D+++ ++ +YY+ I PL R F P+L KN R+ LH ++
Sbjct: 947 PIYVL-DNNIPIDPQYYLENQISKPLLRIF----EPIL---KNASRELLHGSHTRAVSIS 998
Query: 1093 KKKSTISQYFA--SVNCVCCNQ-MTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQV 1149
++ FA + C+ C ++ +N+ +C C + L + + ++
Sbjct: 999 TPSNSGIMKFAKKQLTCLGCKAVISGSNQTLCFHCKGREAELYCKTVGNVSELEMLFGRL 1058
Query: 1150 NKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDL 1183
C C G S D C S DCP+ YR+ + +D+
Sbjct: 1059 WTQCQECQG-SLHQDVLCTSRDCPIFYRRRKAQKDM 1093
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 278 bits (712), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 226/751 (30%), Positives = 364/751 (48%), Gaps = 71/751 (9%)
Query: 464 VRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEV---------EKRNSSRD 514
VR+ DPDIL GY I + YLL R L + + L RI + + + R
Sbjct: 369 VREVDPDILTGYNINNFDFPYLLNRAAHLKVRNFEYLGRIKNIRSVIKEQMLQSKQMGRR 428
Query: 515 EVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWW---- 570
E N + GR+ +L +L + L+SYT + YH L E+ ++T
Sbjct: 429 E--NQYVNFEGRVPFDLLFVLLRDYKLRSYTLNAVSYHFLQEQKEDVHHSIITDLQNGDE 486
Query: 571 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 630
+ R L + + YL +RL+E+L I EMAR+ G+ +L+RG Q +V S
Sbjct: 487 QTRRRLAMYCLKDAYLP-----LRLLEKLMAIVNYMEMARVTGVPLESLLTRGQQIKVLS 541
Query: 631 IMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIA 690
+LR ++ F+ PS + E +I EP+ Y DPI LDF SLYPS+++A
Sbjct: 542 QLLRKAKTKGFIM--PSYTSQGSDEQYEGATVI-EPKRGYYADPISTLDFASLYPSIMMA 598
Query: 691 YNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ-KLTISPSGVAFVDKSIRCG 749
+N C++T + LG + +R + LQ ++ +P+ FV +R G
Sbjct: 599 HNLCYTTLV-----LGGTRE----------KLRQQENLQDDQVERTPANNYFVKSEVRRG 643
Query: 750 ILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMP 809
+LP++L+ +L R K +K +++ ++VL RQL LK+ AN YG+T A G++P
Sbjct: 644 LLPEILESLLAARKRAKNDLK-VETDPFKRKVLDGRQLALKISANSVYGFTGAQV-GKLP 701
Query: 810 CVEVGDSVVSKGR---ETLQKAIE---TVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAF 863
C+E+ SV + GR E + +E T N + V+YGDTDS+ V KT + +
Sbjct: 702 CLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIYGDTDSVMVNFGVKTLERSM 761
Query: 864 EIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQ-DKPIYEAKGIET 922
E+G+E A +V++ P+KL+FEKVY P +L KKRY G + D DK + KGIET
Sbjct: 762 ELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLYFTRPDTYDK--MDCKGIET 819
Query: 923 VRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQA 982
VRRD P V+ ++ L L +D YV++ + ++ RI + + KE A
Sbjct: 820 VRRDNSPLVANLMNSCLQKLLIERDPDGAVAYVKQVIADLLCNRIDISHLVITKEL---A 876
Query: 983 GYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSS 1042
A + LA + DP P++ +RVPYVI + A P + + P +L++ S
Sbjct: 877 KTDYAAKQAHVELAAKMKKRDPGTAPKLGDRVPYVICAAAKNTPAYQKAEDPLYVLEN-S 935
Query: 1043 LRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN--LPRKLHVYLPSVLNERKKKSTISQ 1100
+ +++ YY+ + + PL R F P+L L + H +V+ K ++
Sbjct: 936 VPIDATYYLEQQLSKPLLRIF----EPILGDNAESILLKGEHTRTRTVVT--SKVGGLAG 989
Query: 1101 YFA-SVNCVCCNQMTQNNKGVCDACL-NQTQLLGTCLYYK-IQAWQRSQDQVNKVCTTCV 1157
+ +C+ C + KG ACL + + LY K + A + ++ +++ T C
Sbjct: 990 FMTKKTSCLGCKSLMP--KGYEQACLCPHCEPRMSELYQKEVGAKRELEETFSRLWTECQ 1047
Query: 1158 GRSTSND----CISLDCPVLYRKTQITRDLD 1184
S C + DCP+ Y + ++ DLD
Sbjct: 1048 RCQESLHEEVICSNRDCPIFYMRQKVRMDLD 1078
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 266 bits (680), Expect = 7e-70, Method: Compositional matrix adjust.
Identities = 218/729 (29%), Positives = 350/729 (48%), Gaps = 73/729 (10%)
Query: 366 QMGLDNL-NEVTSHV-ENYY-----LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTC 418
Q+ D L +E+ SH E Y +L+ +I R P+P +D V I +
Sbjct: 246 QLEFDCLYSELISHAPEGEYSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIANLVTLQ 305
Query: 419 PPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIE 478
++ ++ + S + V P + E+E+ + + +R+ DPDI+IGY I
Sbjct: 306 GEDQPFIRNVMTLKSCSPIVGVDVMPFE-----TEREVLLAWRDFIREVDPDIIIGYNIC 360
Query: 479 TLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNT-------------QLQMPG 525
YL+ER LN +++ + + +SR VK+T ++ + G
Sbjct: 361 KFDLPYLIERA------LNLKIAEFPILGRIRNSRVRVKDTTFSSRQYGTRESKEVAVEG 414
Query: 526 RIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP--LHSW--KLLTCWWEHRTHLYKWMT 581
R+ +L ++++ + L SY+ ++ H L E+ HS L E R L +
Sbjct: 415 RVTFDLLQVMQRDYKLSSYSLNSVSSHFLSEQKEDVHHSIISDLQNGNAETRRRLAVYCL 474
Query: 582 VEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNF 641
+ YL + RL+++L FI EMAR+ G+ +LSRG +V S +LR +R N
Sbjct: 475 KDAYLPQ-----RLLDKLMFIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRRARQKNL 529
Query: 642 VAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 701
V P+ KQ + +LE + Y PI LDF SLYPS+++AYN C+ T +
Sbjct: 530 VI--PNAKQAGSEQGTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLV-- 585
Query: 702 VEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDT 761
P LN+ S+ + +PSG FV +++ GILP++L+E+L
Sbjct: 586 ---------IPEDARKLNIPPESVNR-------TPSGETFVKSNLQKGILPEILEELLTA 629
Query: 762 RLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKG 821
R K +KE K + + VL RQL LK+ AN YG+T A G++PC+E+ SV S G
Sbjct: 630 RKRAKADLKEAK-DPLEKAVLDGRQLALKISANSVYGFTGATI-GQLPCLEISSSVTSYG 687
Query: 822 RETLQ---KAIE---TVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTN 875
R+ ++ K +E T N + V+YGDTDS+ V +EA +G+E A ++
Sbjct: 688 RQMIEHTKKLVEDKFTTLNGYEHNAEVIYGDTDSVMVQFGVSAVEEAMNLGREAAEHISG 747
Query: 876 NNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQ-DKPIYEAKGIETVRRDGCPAVSKI 934
P+KL+FEKVY P +L +KKRY G + D DK + KGIETVRRD C V +
Sbjct: 748 TFTKPIKLEFEKVYYPYLLISKKRYAGLFWTKPDNFDK--MDTKGIETVRRDNCLLVKNL 805
Query: 935 LKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALS 994
+ L + +D+ +YV+ S ++ R+ + + K + G +
Sbjct: 806 VNDCLHKILIDRDIPGAVQYVKNAISDLLMNRMDLSLLVITKGLT-KTGDDYEVKAAHVE 864
Query: 995 LARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRV 1054
LA + D P V +RVPYVI+ A G + + P +L++ ++ ++ YY+
Sbjct: 865 LAERMRKRDAATAPNVGDRVPYVIIKAAKGAKAYERSEDPIYVLEN-NIPIDPHYYLENQ 923
Query: 1055 IIPPLERCF 1063
I P+ R F
Sbjct: 924 ISKPILRIF 932
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 249 bits (637), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 219/832 (26%), Positives = 378/832 (45%), Gaps = 87/832 (10%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +++ +I R + P+P YD V I + ++ + + S
Sbjct: 315 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCS-------- 366
Query: 444 PIQMHFV---SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN----- 495
PI + + E+E+ S + + + DPD++IGY YLL R L +N
Sbjct: 367 PITGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYF 426
Query: 496 -----LNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIM 550
+ QE+ K +R E KN + GR+ ++L + ++ E L+SYT +
Sbjct: 427 GRLKTVKQEIKESVFSSKAYGTR-ETKNVNID--GRLQLDLLQFIQREYKLRSYTLNAVS 483
Query: 551 YHVLHERIPLHSWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTS 606
H L E+ + +++ E R L + + YL +RL+E+L + +
Sbjct: 484 AHFLGEQKEDVHYSIISDLQNGDSETRRRLAVYCLKDAYLP-----LRLMEKLMALVNYT 538
Query: 607 EMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEP 666
EMAR+ G+ F +L+RG Q +V S + R + V P+++ +A E +I EP
Sbjct: 539 EMARVTGVPFSYLLARGQQIKVVSQLFR--KCLEIDTVIPNMQSQASDDQYEGATVI-EP 595
Query: 667 ESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR--VEHLGVSDSFPFGCIDLNVSIRS 724
Y PI LDF SLYPS+++A+N C++T + VE L +
Sbjct: 596 IRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNL----------------- 638
Query: 725 LKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHA 784
K+ + I+P+G FV R GILP +L E++ R K+ +++ K + + VL+
Sbjct: 639 --KIDEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEK-DPFKRDVLNG 695
Query: 785 RQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVN------NTSKW 838
RQL LK+ AN YG+T A G++PC+ + SV + GR + K V N K
Sbjct: 696 RQLALKISANSVYGFTGATV-GKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKH 754
Query: 839 QCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKK 898
VVYGDTDS+ V +EA ++G E A V+ P+ L+FEK Y P +L KK
Sbjct: 755 DAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKK 814
Query: 899 RYVGYMYETADQ-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEK 957
RY G + D+ DK + KG+ +VRRD C VS ++ K L + +++ +V +
Sbjct: 815 RYAGLFWTNPDKFDK--LDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRE 872
Query: 958 QFSKIISGRISVQDMTFAKEYR-GQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPY 1016
+ I+ R+ + + +K +P A + R+ V P V +RV Y
Sbjct: 873 TINDILHNRVDISKLIISKTLAPNYTNPQPHAVLAERMKRREGV------GPNVGDRVDY 926
Query: 1017 VIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN 1076
VI+ G L + P +L++ +++++S YY+T + P+ + + P++
Sbjct: 927 VIIGGND--KLYNRAEDPLFVLEN-NIQVDSRYYLTNQLQNPI----ISIVAPIIG--DK 977
Query: 1077 LPRKLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKG-VCDACLNQTQLLGTC 1134
+ V +N +K + + V C C + +G +C CL ++ L
Sbjct: 978 QANGMFVVKSIKINTGSQKGGLMSFIKKVEACKSCKGPLRKGEGPLCSNCLARSGELYIK 1037
Query: 1135 LYYKIQAWQRSQDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQITRDLDQ 1185
Y ++ + ++ C C G S C + +C + Y + ++ ++L +
Sbjct: 1038 ALYDVRDLEEKYSRLWTQCQRCAGNLHSEVLCSNKNCDIFYMRVKVKKELQE 1089
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3 SV=1
Length = 1009
Score = 177 bits (449), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 162/631 (25%), Positives = 291/631 (46%), Gaps = 104/631 (16%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE---- 507
+E ++ F +R ++ +I+ GY I YL++R + N +LS + V+
Sbjct: 345 SEIDMLHGFFSLIRDFNVEIITGYNISNFDLPYLIDRATQI---YNIKLSDYSRVKTGSI 401
Query: 508 -KRNSSRDEVKN-----TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLH 561
+ ++ +D +++++ G I I+++ + + +++L +Y + + H + +
Sbjct: 402 FQVHTPKDTGNGFMRSVSKIKISGIIAIDMYIVCKDKLSLSNYKLDTVANHCIGAKKEDV 461
Query: 562 SWK----LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
S+K L E R + + ++ L+ ++L++ SE+A+L I
Sbjct: 462 SYKDIMPLFMSGPEGRAKIGLYCVIDSVLV-----MKLLKFFMIHVEISEIAKLAKIPTR 516
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFV-AVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 676
VL+ G Q RV S +L +R N++ VS + A ++ P Y + ++
Sbjct: 517 RVLTDGQQIRVFSCLLAAARAENYILPVSNDVNADGFQGAT-----VINPIPGFYNNAVL 571
Query: 677 VLDFQSLYPSVIIAYNYCFST-----CLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQK 731
V+DF SLYPS+I A+N C+ST L HL SD +
Sbjct: 572 VVDFASLYPSIIQAHNLCYSTLIPHHALHNYPHLKSSD-------------------YET 612
Query: 732 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKL 791
+S + FV K I+ +L ++L L R ++Q + E + + + +L +QL +K+
Sbjct: 613 FMLSSGPIHFVKKHIQASLLSRLLTVWLSKRKAIRQKLAECE-DLDTKTILDKQQLAIKV 671
Query: 792 IANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IET-------------VNNT 835
N YG+T SG +PC+ + ++V +GR L+K+ IE V +
Sbjct: 672 TCNAVYGFTGVA-SGLLPCISIAETVTLQGRTMLEKSKIFIEAMTPDTLQEIVPHIVKHE 730
Query: 836 SKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVYQPCIL 894
+ RV+YGDTDS+FV G + + G +A + P+KL+ EK +Q +L
Sbjct: 731 PDAKFRVIYGDTDSLFVECVGYSVDTVVKFGDFLAAFTSEKLFNAPIKLESEKTFQCLLL 790
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAV----SKILK--------KSLCLL 942
KKRY+G + DK + KG++ VR+ C V SKIL K+ L
Sbjct: 791 LAKKRYIGIL----SNDKLL--MKGVDLVRKTACKFVQNTSSKILNLILKDPEVKAAAQL 844
Query: 943 FETKDLS-VVKEYVEKQFSKII-----------SGRISVQDMTFAKEY-RGQAGYKPGAC 989
TKD +E + F K+I +G++ V+++TF+ E R + YK
Sbjct: 845 LSTKDPDYAFREGLPDGFLKVIDILNESHKNLRTGQVPVEELTFSTELSRPISSYKTEN- 903
Query: 990 VPALSLARQWVLTDPRAEPRVSERVPYVIVS 1020
+P L++ ++ ++T P+V +R+PYV V
Sbjct: 904 LPHLTVYKK-IITRHEEPPQVHDRIPYVFVG 933
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3 SV=2
Length = 1117
Score = 171 bits (433), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 188/737 (25%), Positives = 312/737 (42%), Gaps = 137/737 (18%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI-------- 503
+E EL F + + PDIL GY I YLL+R + E +++
Sbjct: 378 SEYELLLGFFIFFKAYPPDILTGYNINLFDIKYLLQRMEKIYHANVSEFTKLRFGGRFSI 437
Query: 504 ---TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPL 560
+ RN+S +K + G +V++++ + + + +Y E + L+E
Sbjct: 438 YVPVGTKPRNASSASIK---VHCTGTVVLDMYPVCVAKTSAPNYKLETMAEMYLNEHKDD 494
Query: 561 HSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-RLIEQLDFIGRTSEMARLFGIQFYEV 619
S+K + + + V Y I+ ++ RL E+L++ + +ARL I V
Sbjct: 495 LSYKEIPPTFLANDN--GRAVVGRYCIKDALLVKRLFEKLNYHYEAASVARLARIPLRSV 552
Query: 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPL----------------- 662
+ G Q R+ S +L + N + S +R A ES P+
Sbjct: 553 IFEGQQIRIYSCILEEAGERNMILPSFLTAKRPGELATESSPVASFEEDSEQTSDSSLGE 612
Query: 663 -----------------ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTC--LGRVE 703
+LEP+ Y P+ V DF SLYPS+I+ +N C+ST LGR +
Sbjct: 613 VSSQGSSDGGVGYQGATVLEPDVGFYDTPVAVFDFASLYPSIIMRHNLCYSTYLPLGRDD 672
Query: 704 HLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRL 763
L D F ++ + R FV + +R IL ++L L R
Sbjct: 673 GLSDDDVF---LLEFDDGTR---------------YGFVREHVRKSILGELLARWLAKRK 714
Query: 764 MVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRE 823
V++ + E + + +L QL LK+ N YG+T + SG MPC+ + ++ GR+
Sbjct: 715 SVRKVLAECQDEVE-KLILDKYQLALKVTCNAFYGFTGVS-SGMMPCLPIAAAITRIGRD 772
Query: 824 TLQKAIETVN----NTSKW--------------QCRVVYGDTDSMFVLAPGKTKQEAFEI 865
L ++ VN + W +V+YGDTDS+FV+ G E
Sbjct: 773 MLMSVVDYVNTYMGHAEFWLRYLGEEDLTGDALNVKVIYGDTDSVFVICGGVKCGSVLEH 832
Query: 866 GKEIANVVTNN-NPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVR 924
G+ IA +T P+KL+FEKV+ ++ KKRYVG +Y Q K KGIE VR
Sbjct: 833 GEAIAGHITRALFREPIKLEFEKVFVNLMMICKKRYVGRIY---GQTK--LSMKGIELVR 887
Query: 925 RDGCPAVSKILKKSLCLLFETKDLS-------------VVKEYVEKQFSKIISG------ 965
+ C V ++ L ++F D+S V + V F +I+
Sbjct: 888 KTACEYVKSTVRNVLNMIFFEDDVSAGAVELSRMTMDDVKRHGVPSGFYRIVEALSNARD 947
Query: 966 -----RISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAE-PRVSERVPYVIV 1019
R+ V+ + + + +P L + ++ L R E P V +RVPYV++
Sbjct: 948 ELYLNRVDVKKLVLSASLSQEVSAYKQQNLPHLRVIQR--LAARREELPSVGDRVPYVLI 1005
Query: 1020 SGAPG----LPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYK 1075
+ PG +P ++ + P +++ L +N E Y V+ + +LG P++P K
Sbjct: 1006 APPPGSSKNVPNYEISEDPGYVIE-HKLPVNGEKYFEHVV----KTVTNVLG-PIIP--K 1057
Query: 1076 NLPRKLHVYLPSVLNER 1092
+ RK +L VL +R
Sbjct: 1058 DCARK-EKFLSYVLPQR 1073
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1 (strain
C500) GN=9 PE=3 SV=1
Length = 1026
Score = 166 bits (421), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 153/668 (22%), Positives = 305/668 (45%), Gaps = 95/668 (14%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE----- 499
++++ +E +L F +R + +++ GY I + Y+L R + N+ E
Sbjct: 368 VKVYEFPSEMDLLYGFFTLLRDYGIEMITGYNICNFDFPYILNRAQNV-YNIKPEDFSKT 426
Query: 500 ----LSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
L + ++ N R +++++M G +VI+++++ R ++NL +Y + L
Sbjct: 427 KTNSLFYVYTPQEGNFMR---SHSKVKMSGVVVIDMYQVCRDKLNLSNYKLNTVAKECLG 483
Query: 556 ERIPLHSWK----LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARL 611
E+ S+K L + R L + + L+ I L++ +E+A++
Sbjct: 484 EKKNDVSYKDIPILFKGSSKDRAKLGMYCVQDAVLV-----IDLLKHFMTHIEITEIAKI 538
Query: 612 FGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLY 671
I VLS G Q RV + +L ++ +++ P + + ++ P S Y
Sbjct: 539 ANIPTRRVLSDGQQIRVFTCLLAAAQERDYILPMPVTGSQEGYQGAT----VINPISGFY 594
Query: 672 TDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQK 731
P++V+DF SLYPS+I A+N C+ST + + DL +
Sbjct: 595 NTPVLVVDFASLYPSIIQAHNLCYSTLIKQQ--------------DLPKFTNLTANDYET 640
Query: 732 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKL 791
IS V FV K +L +L+ L R +K+ +++ + +A ++ +L +QL +K+
Sbjct: 641 FMISGGPVHFVKKHKTESLLASLLKTWLAKRKSIKKELEQCQ-DAKMKTILDKQQLAIKV 699
Query: 792 IANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTS----------KWQC- 840
N YG+T SG +PC+ + ++V +GR L+K + V N + + QC
Sbjct: 700 TCNSVYGFTGVA-SGMLPCLMIAETVTLQGRTMLEKTKQFVENVTVEYLQKICNFEVQCL 758
Query: 841 --------RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVYQP 891
RVVYGDTDS+F+ G + G +A+ ++ +P+KL+ EKV++
Sbjct: 759 PQHPNPKFRVVYGDTDSLFIKCEGFAMDTVIKFGDALASHTSSVLFASPIKLESEKVFKC 818
Query: 892 CILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSV- 950
+L TKKRYVG + +K + KG++ VR+ C V ++ + L LL +++ V
Sbjct: 819 LMLLTKKRYVGIL----SNNKIL--MKGVDLVRKTACVYVQEVTRAVLELLLRDEEVKVA 872
Query: 951 -----------------------VKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPG 987
+ + + + +S + S ++ V ++T++ E
Sbjct: 873 AQTLSYSPVANCFKTEPLLGFLKIIDILNQSYSDLKSNKVPVANLTYSTELSKPFTEYKT 932
Query: 988 ACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNS 1047
+P L++ ++ + + P++ +R+ YV V + G + + + P + + + + S
Sbjct: 933 TNLPHLAVYKKLAMRNEEL-PQIHDRISYVFVK-SNGHLVSDMAEDP-TYAEQNKIPIAS 989
Query: 1048 EYYITRVI 1055
++Y ++I
Sbjct: 990 DWYFDKII 997
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1 (isolate
Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 166 bits (419), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 163/683 (23%), Positives = 308/683 (45%), Gaps = 94/683 (13%)
Query: 428 IILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLE 487
+ +G +E+P V ++ ++E EL F+ VR + P+ + GY I Y++
Sbjct: 361 LFTLGSCAEIPGV-----YIYECASEYELIESFLTFVRVYGPNFITGYNINAFDIPYVIG 415
Query: 488 R----GYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS 543
R G + R+T + S + + ++ + G ++I+++R+ +V+ +
Sbjct: 416 RCRYYNIQCGAFTKMKRGRMTCFKGMESFLNRCQ-CKVTISGIVIIDMYRVCMDKVSAPN 474
Query: 544 YTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-RLIEQLDFI 602
+ + ++ +L E+ S+K + + R V Y + + ++ +L +L F
Sbjct: 475 HKLDTVVDMLLGEKKHSVSYKQIPVLF--RRDDDGRAVVGAYCVHDSVLVHKLFCKLLFH 532
Query: 603 GRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPL 662
S +ARL I +V+ G Q R+ + ML +R + PSI + +
Sbjct: 533 YEASAIARLSNISINKVVFDGQQSRIFTCMLAAARREGLII--PSIDEAGEDTYQGAT-- 588
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSI 722
+LEP++ Y P+ V DF SLYPS+I AYN C+ T ++D++ +
Sbjct: 589 VLEPKTGFYNTPVAVFDFASLYPSIIQAYNLCYCTL--------ITDNY----------V 630
Query: 723 RSLKKLQQKLTISPSGVA--FVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
SL++ + + +G FV +R IL ++L L R V++ +K K + +Q
Sbjct: 631 ASLREEDITMVTTNTGRVHRFVKPHVRKSILSQLLTSWLAERKAVREKLKHCK-DPLMQI 689
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETL--------------- 825
+L +QL LKL N YG+T + G PC+ + +SV ++GR+ L
Sbjct: 690 LLDKQQLALKLTCNAVYGFTGVS-KGMFPCLAIAESVTAQGRQLLAVTKQYICDRFNDWT 748
Query: 826 ---QKAIETVN---NTSKWQCRVVYGDTDSMFVLAPGKTKQEAF--EIGKEIANVVTNNN 877
Q A E V+ ++++++ VVYGDTDS+FVL G + + +A++
Sbjct: 749 FLTQIAPELVDCPVDSNRFKIDVVYGDTDSVFVLLCGIENADRLYSALPNFVAHITKTLF 808
Query: 878 PTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKK 937
P P+KL+ +KV++ +L KKRYVG ++ ++K KGI+ VRR+ C V
Sbjct: 809 PPPIKLEVDKVFEKLLLLCKKRYVGVLH---GEEK--LSMKGIDLVRRNVCGFVKNTTLA 863
Query: 938 SLCLLFETKDLS-------------VVKEYVEKQFSKIIS-----------GRISVQDMT 973
+ LF +S V KE + F K+++ R+ + ++
Sbjct: 864 VIKSLFSDNVISEAVQKMSGMTQDQVCKEGLPPGFFKLVALITDARERLYENRVDIHELQ 923
Query: 974 FAKEYRGQAGYKPGACVPALSLARQWVLTDPRAE-PRVSERVPYVIVSGAPGLPLIKLVK 1032
+ +P L++ R+ + + R E P +R+ YV+++ ++
Sbjct: 924 LSATLTQACDKYKQQNLPHLTVVRKKL--ERREEIPNTGDRIFYVLLAHPDERVANYVIA 981
Query: 1033 SPYELLQDSSLRLNSEYYITRVI 1055
+ ++ L++N Y + +I
Sbjct: 982 EDPDYVETHRLQINCSKYFSNLI 1004
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 163 bits (413), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 168/672 (25%), Positives = 298/672 (44%), Gaps = 106/672 (15%)
Query: 451 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYL---LERGYVLGLNLNQELSR----- 502
++E EL F ++ P+IL GY I YL +E+ Y + +L R
Sbjct: 337 ASEFELLYAFFLFLKCKSPEILTGYNIINFDLKYLCTRMEKIYNFEIGGFSKLKRGKFSV 396
Query: 503 ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 562
I E+ + + T++ M G + +++ + +++ Q+Y + I L++ S
Sbjct: 397 IVPYEQHKKFLNSL--TKVNMSGILCFDMYNVYSSKISAQNYKLDTIAKLCLNQEKENLS 454
Query: 563 WKLLTCWWEHRTHLYKWMTVEHYLIRVTG-IIRLIEQLDFIGRTSEMARLFGIQFYEVLS 621
+K + + + V Y I+ + +++L ++++ +E+A L I +
Sbjct: 455 YKEIPKKFIDGSK--GRAVVGRYCIQDSLLVVQLFTKINYHYEMAEVASLAYITIRCAVF 512
Query: 622 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESL----PLILEPESRLYTDPIIV 677
G Q ++ +L ++ N + PS+ + + E++ +LEP+ Y P +V
Sbjct: 513 EGQQKKIFPCILHEAK--NLNMILPSMNTNFN-KGKENVGYKGATVLEPKIGYYATPTVV 569
Query: 678 LDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPS 737
DFQSLYPS+++A+N C+ST + +D N I + + P
Sbjct: 570 FDFQSLYPSIMMAHNLCYSTLV----------------VDENAVIGLHADDILTVHVGPV 613
Query: 738 GVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTY 797
FV K++R IL +L++ LD R VK MK +N ++ +L +QL LK N Y
Sbjct: 614 THRFVKKTVRESILASLLKKWLDKRKEVKMQMK-MCNNPVMEMLLDKKQLALKTTCNSVY 672
Query: 798 GYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNN-------------------TSKW 838
G T A S +PCV + SV GRE L K ++ V++ + +
Sbjct: 673 GVTGATHS-LLPCVAIAASVTCLGREMLCKTVDYVDSAMYSDTFFIEKFGLTRGDFSGTF 731
Query: 839 QCRVVYGDTDSMFV----LAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCIL 894
V+YGDTDS+FV + P K+ A I I N + + P+KL+FEK+ P IL
Sbjct: 732 GIEVIYGDTDSLFVTFKNVCPKALKRIAPSIASHITNTLFKH---PIKLEFEKILFPLIL 788
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLS----- 949
KKRY+G + D KG+E VR+ C V ++K + LLF D+
Sbjct: 789 ICKKRYIGKL------DDATLVFKGVELVRKTSCDFVKVVVKDIIDLLFWDVDVQKSAEK 842
Query: 950 --------VVKEYVEKQFSKIIS-----------GRISVQDMTFAKEYRGQAGYKPGACV 990
+ + V KII R++++ + + A +
Sbjct: 843 LSNMTIQEIYENGVPDGIQKIIKKLCDARDALFLNRVNIKSLVLSSVLSKDISAYKQANL 902
Query: 991 PALSLARQWVLTDPRAE-PRVSERVPYVIVSGAPGLPLIKLVKSPYELLQD------SSL 1043
P L++ ++ L + E P + +RV Y+++ AP +K YEL +D ++L
Sbjct: 903 PHLAVVKR--LAQRKEELPNIGDRVMYILI--APT-ETVKKTFHNYELAEDPAYAIENNL 957
Query: 1044 RLNSEYYITRVI 1055
++N++ Y +++
Sbjct: 958 KINADKYFEQIM 969
>sp|Q1HVC1|DPOL_EBVA8 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain AG876)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 163 bits (412), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 149/641 (23%), Positives = 281/641 (43%), Gaps = 96/641 (14%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQ----E 499
++++ +E ++ F + +R +I+ GY + W Y+L+R ++ +N
Sbjct: 348 VEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINPASLGKIR 407
Query: 500 LSRITEVEKRNSSRDEV--KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL--- 554
+ EV + + + NT++++ G I I+++ + R +++L Y + + H+L
Sbjct: 408 AGGVCEVRRPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAK 467
Query: 555 -----HERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMA 609
++ IP +L E R L + + L+ + L+ +E+A
Sbjct: 468 KEDVHYKEIP----RLFAAGPEGRRRLGMYCVQDSALV-----MDLLNHFVIHVEVAEIA 518
Query: 610 RLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESR 669
++ I VL G Q RV S +L ++ NF+ PS R + +++P S
Sbjct: 519 KIAHIPCRRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGYQGAT----VIQPLSG 574
Query: 670 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQ 729
Y P++V+DF SLYPS+I A+N C+ST + E ++ P +
Sbjct: 575 FYNSPVLVVDFASLYPSIIQAHNLCYSTMITPGEEHRLAGLRP-------------GEDY 621
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789
+ ++ FV K + L +L L R +K+ + + + + +L +QL +
Sbjct: 622 ESFRLTGGVYHFVKKHVHESFLASLLTSWLAKRKAIKKLLAACE-DPRQRTILDKQQLAI 680
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTS------------K 837
K N YG+T +G PC+ + ++V +GR L++A V S
Sbjct: 681 KCTCNAVYGFTGVA-NGLFPCLSIAETVTLQGRTMLERAKAFVEALSPANLQALAPSPDA 739
Query: 838 W-------QCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVY 889
W Q RV+YGDTDS+F+ G ++ E + +A T + P+ L+ EK +
Sbjct: 740 WAPLNPEGQLRVIYGDTDSLFIECRGFSESETLRFAEALAAHTTRSLFVAPISLEAEKTF 799
Query: 890 QPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFE----- 944
+L TKKRYVG + + KG+E VR+ C V ++ L L+
Sbjct: 800 SCLMLITKKRYVGVLTDGKTL------MKGVELVRKTACKFVQTRCRRVLDLVLADARVK 853
Query: 945 ---------------TKDLSV----VKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGY 984
T+ L V V + + + ++ + GR+ + ++ F+ E R + Y
Sbjct: 854 EAASLLSHRPFQESFTQGLPVGFLPVIDILNQAYTDLREGRVPMGELCFSTELSRKLSAY 913
Query: 985 KPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGL 1025
K +P L++ +++V + P++ +R+ YV V G+
Sbjct: 914 K-STQMPHLAVYQKFVERNEEL-PQIHDRIQYVFVEPKGGV 952
>sp|Q3KSP1|DPOL_EBVG DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain GD1)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 149/641 (23%), Positives = 281/641 (43%), Gaps = 96/641 (14%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQ----E 499
++++ +E ++ F + +R +I+ GY + W Y+L+R ++ +N
Sbjct: 348 VEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINPASLGKIR 407
Query: 500 LSRITEVEKRNSSRDEV--KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL--- 554
+ EV + + + NT++++ G I I+++ + R +++L Y + + H+L
Sbjct: 408 AGGVCEVRRPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAK 467
Query: 555 -----HERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMA 609
++ IP +L E R L + + L+ + L+ +E+A
Sbjct: 468 KEDVHYKEIP----RLFAAGPEGRRRLGMYCVQDSALV-----MDLLNHFVIHVEVAEIA 518
Query: 610 RLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESR 669
++ I VL G Q RV S +L ++ NF+ PS R + +++P S
Sbjct: 519 KIAHIPCRRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGYQGAT----VIQPLSG 574
Query: 670 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQ 729
Y P++V+DF SLYPS+I A+N C+ST + E ++ P +
Sbjct: 575 FYNSPVLVVDFASLYPSIIQAHNLCYSTMITPGEEHRLAGLRP-------------GEDY 621
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789
+ ++ FV K + L +L L R +K+ + + + + +L +QL +
Sbjct: 622 ESFRLTGGVYHFVKKHVHESFLASLLTSWLAKRKAIKKLLAACE-DPRQRTILDKQQLAI 680
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTS------------K 837
K N YG+T +G PC+ + ++V +GR L++A V S
Sbjct: 681 KCTCNAVYGFTGVA-NGLFPCLSIAETVTLQGRTMLERAKAFVEALSPANLQALAPSPDA 739
Query: 838 W-------QCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVY 889
W Q RV+YGDTDS+F+ G ++ E + +A T + P+ L+ EK +
Sbjct: 740 WAPLNPEGQLRVIYGDTDSLFIECRGFSESETLRFAEALAAHTTRSLFVAPISLEAEKTF 799
Query: 890 QPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFE----- 944
+L TKKRYVG + + KG+E VR+ C V ++ L L+
Sbjct: 800 SCLMLITKKRYVGVLTDGKTL------MKGVELVRKTACKFVQTRCRRVLDLVLADARVK 853
Query: 945 ---------------TKDLSV----VKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGY 984
T+ L V V + + + ++ + GR+ + ++ F+ E R + Y
Sbjct: 854 EAASLLSHRPFQESFTQGLPVGFLPVIDILNQAYTDLREGRVPMGELCFSTELSRKLSAY 913
Query: 985 KPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGL 1025
K +P L++ +++V + P++ +R+ YV V G+
Sbjct: 914 KSTQ-MPHLAVYQKFVERNEEL-PQIHDRIQYVFVEPKGGV 952
>sp|P03198|DPOL_EBVB9 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain B95-8)
GN=BALF5 PE=1 SV=1
Length = 1015
Score = 162 bits (411), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 149/641 (23%), Positives = 280/641 (43%), Gaps = 96/641 (14%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQ----E 499
++++ +E ++ F + +R +I+ GY + W Y+L+R ++ +N
Sbjct: 348 VEVYEFPSELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINPASLGKIR 407
Query: 500 LSRITEVEKRNSSRDEV--KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL--- 554
+ EV + + + NT++++ G I I+++ + R +++L Y + + H+L
Sbjct: 408 AGGVCEVRRPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAK 467
Query: 555 -----HERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMA 609
++ IP +L E R L + + L+ + L+ +E+A
Sbjct: 468 KEDVHYKEIP----RLFAAGPEGRRRLGMYCVQDSALV-----MDLLNHFVIHVEVAEIA 518
Query: 610 RLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESR 669
++ I VL G Q RV S +L ++ NF+ PS R + +++P S
Sbjct: 519 KIAHIPCRRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGYQGAT----VIQPLSG 574
Query: 670 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQ 729
Y P++V+DF SLYPS+I A+N C+ST + E ++ P +
Sbjct: 575 FYNSPVLVVDFASLYPSIIQAHNLCYSTMITPGEEHRLAGLRP-------------GEDY 621
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789
+ ++ FV K + L +L L R +K+ + + + + +L +QL +
Sbjct: 622 ESFRLTGGVYHFVKKHVHESFLASLLTSWLAKRKAIKKLLAACE-DPRQRTILDKQQLAI 680
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTS------------K 837
K N YG+T +G PC+ + ++V +GR L++A V S
Sbjct: 681 KCTCNAVYGFTGVA-NGLFPCLSIAETVTLQGRTMLERAKAFVEALSPANLQALAPSPDA 739
Query: 838 W-------QCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVY 889
W Q RV+YGDTDS+F+ G ++ E +A T + P+ L+ EK +
Sbjct: 740 WAPLNPEGQLRVIYGDTDSLFIECRGFSESETLRFADALAAHTTRSLFVAPISLEAEKTF 799
Query: 890 QPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFE----- 944
+L TKKRYVG + + KG+E VR+ C V ++ L L+
Sbjct: 800 SCLMLITKKRYVGVLTDGKTL------MKGVELVRKTACKFVQTRCRRVLDLVLADARVK 853
Query: 945 ---------------TKDLSV----VKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGY 984
T+ L V V + + + ++ + GR+ + ++ F+ E R + Y
Sbjct: 854 EAASLLSHRPFQESFTQGLPVGFLPVIDILNQAYTDLREGRVPMGELCFSTELSRKLSAY 913
Query: 985 KPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGL 1025
K +P L++ +++V + P++ +R+ YV V G+
Sbjct: 914 KSTQ-MPHLAVYQKFVERNEEL-PQIHDRIQYVFVEPKGGV 952
>sp|P30321|DPOL_PBCV1 DNA polymerase OS=Paramecium bursaria Chlorella virus 1 GN=DPO PE=3
SV=2
Length = 913
Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 167/658 (25%), Positives = 293/658 (44%), Gaps = 96/658 (14%)
Query: 453 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGL-----------------N 495
E ++ + +++ ++ D+ IGY +W Y L YV G N
Sbjct: 249 ESDVMNTWMKILQDEKTDVSIGYN----TWQYDLR--YVHGRTQMCVDDMTGEDKVKLSN 302
Query: 496 LNQELSRITEVEKRNSSRDEVKNTQ---LQMPGRIVINLWRLLRHEVNLQSYTFENIMYH 552
L + LS EV +R+ S + + L MPG + I+L + R NL+SY+ N+
Sbjct: 303 LGRLLSGGGEVVERDLSSNAFGQNKFFLLDMPGVMQIDLLQWFRKNRNLESYSLNNVSKL 362
Query: 553 VLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARL 611
L ++ + + + + + + Y + T + ++L++++ + +EMA
Sbjct: 363 YLGDQ--KNDLPAMQIFEKFEGNAEDRAIIAAYAAKDTDLPLKLLKKMAILEDLTEMANA 420
Query: 612 FGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLY 671
+ + RG Q R S ++ +R N+ P K A E +L+ + Y
Sbjct: 421 VKVPVDYINFRGQQIRAFSCLVGKARQMNYAI--PDDKAWATEGKYEG-ATVLDAKKGAY 477
Query: 672 TDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQ 729
PI LDF SLYPS+I A+N T + R E++ + + ++ + K Q
Sbjct: 478 FTPIAALDFASLYPSIIRAHNMSPETLVMEKRFENVPGVEYY-----EIETGLGKFKYAQ 532
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAA-LQRVLH-ARQL 787
+ G++P +L ++ R + K+ M E K N + L+ A+Q
Sbjct: 533 KNDETGEGQ----------GVVPALLDDLAKFRKLAKKHMAEAKRNGDDFKEALYDAQQR 582
Query: 788 GLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRE----TLQKAIETVNNTSKWQCRVV 843
K++ N YG+ A+ G +PCV + SV + GR+ T ++A+E + + V+
Sbjct: 583 SFKVVMNSVYGFLGAS-KGFIPCVPIAASVTATGRKMIEHTAKRAVELLPGSE-----VI 636
Query: 844 YGDTDSMFV---LAPGKTKQ--EAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKK 898
YGDTDS+ V L K E F++ K +A +T + P L+FEK+Y P IL +KK
Sbjct: 637 YGDTDSVMVKMKLPDDKVHDMDEQFKMAKWLAGEITKDFRAPNDLEFEKIYYPYILYSKK 696
Query: 899 RYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDL-SVVKEYVEK 957
RY +E D+ + + KG+ VRRD P ILK+SL + KD + V E +E+
Sbjct: 697 RYAAVKFEEPDEKGKV-DVKGLALVRRDFSPITRDILKESLDTILYKKDTPTAVSETLER 755
Query: 958 QFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYV 1017
K++ ++ +K + GYK C P L +A ++ ER +
Sbjct: 756 -IRKVLDNEYPMEKFMMSKLLK--TGYK-NECQPHLHVAN-----------KIYERTGFP 800
Query: 1018 IVSGAPGLPLIKL-------VKSPYE-----LLQDSSLRLNSEYYITRVIIPPLERCF 1063
+ SGA +P + + +K ++ QD+ L ++ +YI ++ P+ F
Sbjct: 801 VPSGA-RVPFVYIEDKKNPDIKQSFKAEDPTFAQDNGLIVDRLFYIEHQLLKPICSLF 857
>sp|P52367|DPOL_EHV2 DNA polymerase OS=Equine herpesvirus 2 (strain 86/87) GN=9 PE=3 SV=1
Length = 1008
Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 148/639 (23%), Positives = 281/639 (43%), Gaps = 98/639 (15%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQ----E 499
++++ +E +L +F +R D + + GY I + Y+++R V LNL +
Sbjct: 346 VEVYQCPSELDLLYLFFTMIRDADVEFVTGYNISNFDFPYVIDRATQVYNLNLKEFTRVR 405
Query: 500 LSRITEVEK-RNSSRDEVKN-TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 557
S I EV K +NSS ++ +++++ G + I+++++ R +++L +Y + + + +
Sbjct: 406 SSSIFEVHKPKNSSAGFMRAVSKVKVAGVVPIDMYQVCRDKLSLSNYKLDTVAGECVGAK 465
Query: 558 IPLHSWKLLTCWWEH----RTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 613
S+K + + R L + + L+ + L+ SE+A++
Sbjct: 466 KEDVSYKEIPHLFRQGPGGRARLGLYCVKDSALV-----LDLLRYFMTHVEISEIAKIAK 520
Query: 614 IQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTD 673
I VL+ G Q RV S +L ++ ++ + + A + +I +P Y
Sbjct: 521 IPTRRVLTDGQQIRVFSCLLDVAGREGYIL---PVDRHADAEGYQGATVI-DPSPGFYNT 576
Query: 674 PIIVLDFQSLYPSVIIAYNYCFST-------CLGRVEHLGVSDSFPFGCIDLNVSIRSLK 726
P++V+DF SLYP++I A+N C+ST CL HLG D
Sbjct: 577 PVLVVDFASLYPTIIQAHNLCYSTMIPGDRLCLH--PHLGPGD----------------- 617
Query: 727 KLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQ 786
+ ++ V FV K +L +L L R +++ + S+ A++ +L +Q
Sbjct: 618 --YETFELASGPVHFVKKHKAVSLLATLLNVWLAKRKAIRRELATV-SDEAVRTILDKQQ 674
Query: 787 LGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTS---------- 836
L +K+ N YG+T SG +PC+++ ++V +GR L+ + + +
Sbjct: 675 LAIKVTCNAVYGFTGVA-SGILPCLKIAETVTFQGRRMLENSKRYIEGVTPEGLADILGR 733
Query: 837 KWQC------RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVY 889
+ +C +V+YGDTDS+F+ G ++ E+A +T P+KL+ EK +
Sbjct: 734 RVECAPDASFKVIYGDTDSLFIHCRGYRPEQVTGFCDELAAHMTRTLFVDPIKLEAEKTF 793
Query: 890 QPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLS 949
+ IL TKKRY+G M T D+ KG++ VR+ C V + K L L+ + +
Sbjct: 794 KCLILLTKKRYIGMM--TTDR----LLMKGVDLVRKTACRFVQETTKAILDLVMGDEAVR 847
Query: 950 VVKE------------------------YVEKQFSKIISGRISVQDMTFAKEYRGQAGYK 985
E + + K+ R+ V ++F+ E Y
Sbjct: 848 AAAERLCAMRVEEVCARGPPVGFLKVVDILNDSYRKLRLNRVPVGQLSFSTELSRPISYY 907
Query: 986 PGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPG 1024
+P L + + ++ P++ +R+ YV V G
Sbjct: 908 KTLTLPHLVVYHK-IMQRNEELPQIHDRIAYVFVQSPKG 945
>sp|P56689|DPOL_THEGO DNA polymerase OS=Thermococcus gorgonarius GN=pol PE=1 SV=1
Length = 773
Score = 152 bits (385), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 147/624 (23%), Positives = 278/624 (44%), Gaps = 64/624 (10%)
Query: 450 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 509
VS EKE+ F++ V++ DPD+LI Y + + YL +R LG+ + R
Sbjct: 184 VSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKF---------ILGR 234
Query: 510 NSSRDEVKNT----QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 565
S +++ +++ GRI +L+ ++R +NL +YT E + + + +
Sbjct: 235 EGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKVYAEE 294
Query: 566 LTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 625
+ WE L + V Y + + + + +F ++++RL G ++V +
Sbjct: 295 IAQAWETGEGLER---VARYSMEDAKVTYELGK-EFFPMEAQLSRLVGQSLWDVSRSSTG 350
Query: 626 FRVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 684
VE +LR + N +A + P ++ A R + + EPE L+ + I+ LDF+SLY
Sbjct: 351 NLVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLWEN-IVYLDFRSLY 409
Query: 685 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDK 744
PS+II +N T L R GC + +V+ + K +
Sbjct: 410 PSIIITHNVSPDT-LNRE-----------GCEEYDVAPQVGHKFCKDFP----------- 446
Query: 745 SIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANF 804
G +P +L ++L+ R VK+ MK + +++L RQ +K++AN YGY
Sbjct: 447 ----GFIPSLLGDLLEERQKVKKKMKA-TIDPIEKKLLDYRQRAIKILANSFYGYYGYA- 500
Query: 805 SGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFE 864
R C E +SV + GR+ ++ I + K+ +V+Y DTD F PG + +
Sbjct: 501 KARWYCKECAESVTAWGRQYIETTIREIEE--KFGFKVLYADTDGFFATIPGADAETVKK 558
Query: 865 IGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVR 924
KE + + P ++L++E Y+ TKK+Y D++ I +G+E VR
Sbjct: 559 KAKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYA-----VIDEEDKI-TTRGLEIVR 612
Query: 925 RDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAG 983
RD + + L + + D+ V++ K+ + + + ++ R
Sbjct: 613 RDWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDLKD 672
Query: 984 YKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSL 1043
YK A P +++A++ + P + Y+++ G+ + + P++ +
Sbjct: 673 YK--ATGPHVAVAKRLAARGIKIRPGTV--ISYIVLKGSGRIGDRAI---PFDEFDPAKH 725
Query: 1044 RLNSEYYITRVIIPPLERCFLLLG 1067
+ ++EYYI ++P +ER G
Sbjct: 726 KYDAEYYIENQVLPAVERILRAFG 749
>sp|P28040|DPOA_SCHPO DNA polymerase alpha catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol1 PE=1 SV=1
Length = 1405
Score = 152 bits (383), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 161/641 (25%), Positives = 273/641 (42%), Gaps = 76/641 (11%)
Query: 453 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE-KRNS 511
E L + F+ VR +DPD+ G++ E + + LL R ++ + R+ E R+
Sbjct: 602 EVSLLNNFLNKVRTYDPDVYFGHDFE-MCYSVLLSRLKERKIHNWSSIGRLRRSEWPRSF 660
Query: 512 SRDEVKNTQLQM-PGRIVINLWR-LLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLLTC 568
+R + + Q+ GR++ +L R + QS++ I+ L +R ++ K L
Sbjct: 661 NRSSQQFVEKQIIAGRLMCDLSNDFGRSMIKAQSWSLSEIVLKELDIKRQDINQEKALQS 720
Query: 569 WWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV 628
W + L ++ H I I + ++ + + + + G + L+ R
Sbjct: 721 WTDTAHGLLDYLV--HCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAERN 778
Query: 629 ESIMLRLSRLNNFVAVSPSIKQRAHMRA--------PESLP---------LILEPESRLY 671
E I+L + N ++ R H A ESL L+ EP+ LY
Sbjct: 779 EYILLHEFKKNGYIVPDKQQSIRRHAEAFGAEDGLQEESLGKKKDKYKGGLVFEPQKGLY 838
Query: 672 TDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQK 731
I+V+DF SLYPS+I YN CF+T + D P
Sbjct: 839 ETCILVMDFNSLYPSIIQEYNICFTTVDRSPSNSDSDDQIP------------------- 879
Query: 732 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKL 791
+PS A GI P+++ +++ R +K +K+ + + +Q LKL
Sbjct: 880 --DTPSASA------NQGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDIQQQALKL 931
Query: 792 IANVTY---GYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTD 848
AN Y GYT + F R V + KGRE L E + +V+YGDTD
Sbjct: 932 TANSMYGCLGYTKSRFYARPLAV----LITYKGREALMNTKELADQMG---LQVIYGDTD 984
Query: 849 SMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETA 908
S+ + K A IG E V N + +++ + VYQ +L KK+Y ++
Sbjct: 985 SVMLNTNVTDKNHALRIGNEFKEKV-NERYSKLEIDIDNVYQRMLLHAKKKYAALQLDS- 1042
Query: 909 DQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEK---QFS-KIIS 964
Q KP + KG++ RR+ C + K L + + V E + FS K+ +
Sbjct: 1043 -QGKPNLDVKGLDMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFSEKMRN 1101
Query: 965 GRISVQD-MTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEP-RVSERVPYVIV-SG 1021
G+ + F + + Y G +P + +A + R E RV + +P++I S
Sbjct: 1102 GKFPANKFIIFNRLGKNPEDYPNGKTMPFVQVA---LKKKARGENVRVGDVIPFIIAGSD 1158
Query: 1022 APGLPLIKLVKSPYELLQ-DSSLRLNSEYYITRVIIPPLER 1061
A G P + SP E++ +S+L ++ YY++ I+PP+ER
Sbjct: 1159 ADGHPADR-AYSPQEIMNTNSTLVIDYNYYLSHQILPPIER 1198
>sp|Q56366|DPOL_THES9 DNA polymerase OS=Thermococcus sp. (strain 9oN-7) GN=pol PE=1 SV=1
Length = 775
Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 155/623 (24%), Positives = 269/623 (43%), Gaps = 62/623 (9%)
Query: 450 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 509
VS EKE+ F+ VR+ DPD+LI Y + + YL +R LG+ L R K
Sbjct: 184 VSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFT--LGRDGSEPKI 241
Query: 510 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 569
D +++ GRI +L+ ++R +NL +YT E + V + + +
Sbjct: 242 QRMGDRF---AVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQA 298
Query: 570 WEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE 629
WE L + V Y + + + + +F ++++RL G ++V + VE
Sbjct: 299 WESGEGLER---VARYSMEDAKVTYELGR-EFFPMEAQLSRLIGQSLWDVSRSSTGNLVE 354
Query: 630 SIMLRLS-RLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVI 688
+LR + + N P ++ A R + + EPE L+ D I+ LDF+SLYPS+I
Sbjct: 355 WFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVKEPERGLW-DNIVYLDFRSLYPSII 413
Query: 689 IAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRC 748
I +N T L R GC + +V+ K +
Sbjct: 414 ITHNVSPDT-LNRE-----------GCKEYDVAPEVGHKFCKDFP--------------- 446
Query: 749 GILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRM 808
G +P +L ++L+ R +K+ MK + +++L RQ +K++AN YGY R
Sbjct: 447 GFIPSLLGDLLEERQKIKRKMKA-TVDPLEKKLLDYRQRAIKILANSFYGYYGYA-KARW 504
Query: 809 PCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKE 868
C E +SV + GRE ++ I + K+ +V+Y DTD + PG + + KE
Sbjct: 505 YCKECAESVTAWGREYIEMVIRELEE--KFGFKVLYADTDGLHATIPGADAETVKKKAKE 562
Query: 869 IANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGC 928
+ P ++L++E Y TKK+Y D++ I +G+E VRRD
Sbjct: 563 FLKYINPKLPGLLELEYEGFYVRGFFVTKKKYA-----VIDEEGKI-TTRGLEIVRRDWS 616
Query: 929 PAVSKILKKSLCLLFETKDLS----VVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGY 984
+ + L + + D+ +VKE EK + V ++ R Y
Sbjct: 617 EIAKETQARVLEAILKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIHEQITRDLR---DY 673
Query: 985 KPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLR 1044
K A P +++A++ + P + Y+++ G+ + + P + + R
Sbjct: 674 K--ATGPHVAVAKRLAARGVKIRPGTV--ISYIVLKGSGRIGDRAI---PADEFDPTKHR 726
Query: 1045 LNSEYYITRVIIPPLERCFLLLG 1067
++EYYI ++P +ER G
Sbjct: 727 YDAEYYIENQVLPAVERILKAFG 749
>sp|P28857|DPOL_HHV6U DNA polymerase OS=Human herpesvirus 6A (strain Uganda-1102) GN=U38
PE=3 SV=1
Length = 1012
Score = 149 bits (376), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 141/534 (26%), Positives = 237/534 (44%), Gaps = 69/534 (12%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER-----GYVLGLNLNQE 499
+ ++ ++E EL F +R P+ + GY I YL R Y +G +
Sbjct: 333 VHIYEFASEFELLLGFFIFLRIESPEFITGYNINNFDLKYLCIRMDKIYHYDIGCFSKLK 392
Query: 500 LSRITEVEKRNSSRDEVKNTQLQM--PGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 557
+I R Q ++ G + ++++ + ++ Q+Y + I L +
Sbjct: 393 NGKIGISVPHEQYRKGFLQAQTKVFTSGVLYLDMYPVYSSKITAQNYKLDTIAKICLQQE 452
Query: 558 IPLHSWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 613
S+K + + R + K+ + L+ +RL +Q+++ +E+ARL
Sbjct: 453 KEQLSYKEIPKKFISGPSGRAVVGKYCLQDSVLV-----VRLFKQINYHFEVAEVARLAH 507
Query: 614 IQFYEVLSRGSQFRVESIMLRLSRLNNFV---AVSPSIKQRAHMRAPESLPLILEPESRL 670
+ V+ G Q ++ +L ++ N + VS +Q + +LEP++
Sbjct: 508 VTARCVVFEGQQKKIFPCILTEAKRRNMILPSMVSSHNRQGIGYKGAT----VLEPKTGY 563
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFST-CLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQ 729
Y P +V DFQSLYPS+++A+N C+ST L + G+S+S I ++K
Sbjct: 564 YAVPTVVFDFQSLYPSIMMAHNLCYSTLVLDERQIAGLSES----------DILTVK--- 610
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789
+ FV IR +L +L++ L R VK M+ S+ ++ +L +QL L
Sbjct: 611 ----LGDETHRFVKPCIRESVLGSLLKDWLAKRREVKAEMQNC-SDPMMKLLLDKKQLAL 665
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNN--------------- 834
K N YG T A G +PCV + SV GRE L ++ VN+
Sbjct: 666 KTTCNSVYGVTGAA-HGLLPCVAIAASVTCLGREMLCSTVDYVNSKMQSEQFFCEEFGLT 724
Query: 835 ----TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVY 889
T + V+YGDTDS+F+ Q I IA +T+ +P+KL+FEK+
Sbjct: 725 SSDFTGDLEVEVIYGDTDSIFMSVRNMVNQSLRRIAPMIAKHITDRLFKSPIKLEFEKIL 784
Query: 890 QPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943
P IL KKRY+G QD + KG++ VR+ C V ++K + LLF
Sbjct: 785 CPLILICKKRYIG------RQDDSLLIFKGVDLVRKTSCDFVKGVVKDIVDLLF 832
>sp|O89042|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus
norvegicus GN=Pola1 PE=2 SV=1
Length = 1451
Score = 149 bits (375), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 150/653 (22%), Positives = 281/653 (43%), Gaps = 63/653 (9%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
++ K +++ + E+ L F+ V + DPDIL+G+ I LL+R + +
Sbjct: 609 IKKKNMEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPFWSK 668
Query: 500 LSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERI 558
+ R+ + GR++ ++ ++ ++ +SY ++ +L ERI
Sbjct: 669 IGRLRRSNMPKLGSRSGFGERNATCGRMICDVEISVKELIHCKSYHLSELVQQILKTERI 728
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
+ + + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 729 VIPTENIRNMYSEPSHLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSR 785
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSI---------------------KQRAHMRAP 657
L G R E ++L NN++ I ++ +A
Sbjct: 786 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKPGDEDEEIDGDTNKYKKGRKKAA 845
Query: 658 ESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRV--EHLGVSDSFPFGC 715
+ L+L+P+ Y I++LDF SLYPS+I +N CF+T + RV E L ++
Sbjct: 846 YAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT-VQRVASETLKATED----- 899
Query: 716 IDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSN 775
+ Q+++ P D ++ GILP+ ++++++ R VKQ MK+ N
Sbjct: 900 -----------EEQEQIPELP------DPNLDMGILPREIRKLVERRKQVKQLMKQQDLN 942
Query: 776 AALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNT 835
L RQ LKL AN YG ++S R + V KGRE L E V
Sbjct: 943 PDLVLQYDIRQKALKLTANSMYGCLGFSYS-RFYAKPLAALVTYKGREILMHTKEMV--- 998
Query: 836 SKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQ 895
K V+YGDTDS+ + +E F++G ++ N V N +++ + V++ +L
Sbjct: 999 QKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKNEV-NKLYKLLEIDIDGVFKSLLLL 1057
Query: 896 TKKRYVGYMYETADQDKPI--YEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKE 953
KK+Y + E I E KG++ VRRD C + + + + E
Sbjct: 1058 KKKKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVE 1117
Query: 954 YVEKQFSKI----ISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEP 1008
++K+ +I ++G + V K + Y +P + +A W+ + +
Sbjct: 1118 NIQKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDKKSLPHVHVAL-WINSQGGRKV 1176
Query: 1009 RVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
+ + V YVI LP + +P +L + +L ++++YY+ + I P + R
Sbjct: 1177 KAGDTVSYVICQDGSNLPATQRAYAPEQLQKQDNLAIDTQYYLAQQIHPVVAR 1229
>sp|P09252|DPOL_VZVD DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Dumas) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 147 bits (371), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 132/580 (22%), Positives = 259/580 (44%), Gaps = 114/580 (19%)
Query: 433 QESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG--- 489
+++ LPE P + F S E EL F+ V+Q+ P+ GY I W +++E+
Sbjct: 409 KDAGLPE----PTVLEFDS-EFELLIAFMTLVKQYAPEFATGYNIVNFDWAFIMEKLNSI 463
Query: 490 YVLGLNLNQELSR-----ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSY 544
Y L L+ ++R I +V K R +++++ G I ++++ + ++ L SY
Sbjct: 464 YSLKLDGYGSINRGGLFKIWDVGKSGFQR----RSKVKINGLISLDMYAIATEKLKLSSY 519
Query: 545 TFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-----RLIEQL 599
+++ L+E +K + ++ + + Y I+ + ++ + + L
Sbjct: 520 KLDSVAREALNESKRDLPYKDIPGYYASGPNTRG--IIGEYCIQDSALVGKLFFKYLPHL 577
Query: 600 DFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFV----------------- 642
+ S +ARL I + + G Q R+ + +L L+ F+
Sbjct: 578 EL----SAVARLARITLTKAIYDGQQVRIYTCLLGLASSRGFILPDGGYPATFEYKDVIP 633
Query: 643 -------------AVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVII 689
+VSP+ + + +P++ Y DP++VLDF SLYPS+I
Sbjct: 634 DVGDVEEEMDEDESVSPTGTSSGRNVGYKG-ARVFDPDTGFYIDPVVVLDFASLYPSIIQ 692
Query: 690 AYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQ----QKLTISPSGVAFVDKS 745
A+N CF+T L ++ ++K+L T+ + FV +
Sbjct: 693 AHNLCFTT--------------------LTLNFETVKRLNPSDYATFTVGGKRLFFVRSN 732
Query: 746 IRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFS 805
+R +L +L++ L R ++ + S+ A+ +L +Q +K++ N YG+T
Sbjct: 733 VRESLLGVLLKDWLAMRKAIRARIPGSSSDEAV--LLDKQQAAIKVVCNSVYGFTGVA-Q 789
Query: 806 GRMPCVEVGDSVVSKGRETLQKAIETVNNT---------------------SKWQCRVVY 844
G +PC+ V +V + GR+ L + ++N ++ +V+Y
Sbjct: 790 GFLPCLYVAATVTTIGRQMLLSTRDYIHNNWAAFERFITAFPDIESSVLSQKAYEVKVIY 849
Query: 845 GDTDSMFVLAPGKTKQEAFEIGKEIANVV-TNNNPTPVKLKFEKVYQPCILQTKKRYVGY 903
GDTDS+F+ G + + +IG+++A+++ T P+KL+ EK + +L TKK+Y+G
Sbjct: 850 GDTDSVFIRFKGVSVEGIAKIGEKMAHIISTALFCPPIKLECEKTFIKLLLITKKKYIGV 909
Query: 904 MYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943
+Y KG++ VR++ C ++ +K + LL
Sbjct: 910 IYGGK------VLMKGVDLVRKNNCQFINDYARKLVELLL 943
>sp|Q9E6N9|DPOL_GAHVM DNA polymerase catalytic subunit OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV043 PE=3 SV=1
Length = 1220
Score = 146 bits (369), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 145/572 (25%), Positives = 260/572 (45%), Gaps = 109/572 (19%)
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER---GYVLGLN----L 496
PI + F S E EL F+ ++Q+ P+ + GY I W +++ + Y + L+ +
Sbjct: 425 PIVLEFDS-EFELLLAFMTFIKQYAPEFVTGYNIVNFDWAFIVTKLTTVYNMRLDGYGVV 483
Query: 497 NQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
NQ+ + +V ++R + K + + G I ++++ + ++ LQSY + + L E
Sbjct: 484 NQK--GMFKVWDAGTNRFQ-KKGKFKATGMITLDMYSIATEKLKLQSYKLDVVAEAALGE 540
Query: 557 RIPLHSWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLF 612
R S+K + + E R + ++ + L+ + I L+ S +A+L
Sbjct: 541 RKKELSYKEIPSHFAAGPEKRGIIGEYCLQDSLLVGKL-FFKYIPHLEL----SAIAKLA 595
Query: 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAV-------------------------SP- 646
GI + + G Q RV + +LRL+R + F+ SP
Sbjct: 596 GILLSKAIFDGQQIRVYTCLLRLARSHGFILPEKNKKFAETVSLTCEEDQTEICEHDSPQ 655
Query: 647 ----SIKQRA--HMRAPESLPL----ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFS 696
+IKQ + H + ++ +L+P S + DP++V DF SLYPS+I A+N CF+
Sbjct: 656 EPIHNIKQSSLCHSNSGRTIGYQGAKVLDPISGFHVDPVMVFDFASLYPSIIQAHNLCFT 715
Query: 697 TCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG--VAFVDKSIRCGILPKM 754
T V D D N+S +L+ L I+ G + FV IR +L +
Sbjct: 716 TL--------VHD-------DTNLS--NLRPQDDYLEINVQGKLLRFVKPHIRESLLAIL 758
Query: 755 LQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVG 814
L++ L R ++ + E A+ +L +Q +K++ N YG+ + +G +PC++V
Sbjct: 759 LKDWLAMRKAIRAKIPESCDEIAV--LLDKQQAAIKVVCNSVYGFCGVS-NGLLPCIDVA 815
Query: 815 DSVVSKGRETLQKAIETVNNTSKWQCR----------------------VVYGDTDSMFV 852
+V + GR L + ++ +W R V+YGDTDS+F+
Sbjct: 816 ATVTTIGRNMLLTVRDYIH--KQWGTRDALLREFPNLSNFMRPEDYSVSVIYGDTDSVFI 873
Query: 853 LAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQD 911
G G ++A V+++ P P+KL+ EK + +L TKK+Y+G ++
Sbjct: 874 KFKGVDIHGLVTTGDDMAKRVSSDLFPKPIKLECEKTFNKLLLITKKKYMGTIHGGR--- 930
Query: 912 KPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943
KG++ VR++ C ++ KK LLF
Sbjct: 931 ---MLMKGVDIVRKNNCRFINTYAKKLSDLLF 959
>sp|Q9QJ32|DPOL_HHV6Z DNA polymerase catalytic subunit OS=Human herpesvirus 6B (strain
Z29) GN=U38 PE=3 SV=1
Length = 1012
Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 139/534 (26%), Positives = 240/534 (44%), Gaps = 69/534 (12%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER-----GYVLGLNLNQE 499
+ ++ ++E EL F +R P+ + GY I YL R Y +G +
Sbjct: 333 VHIYEFASEFELLLGFFIFLRIESPEFITGYNINNFDLKYLCIRMDKIYHYEIGCFSKLK 392
Query: 500 LSRI-TEVEKRNSSRDEVK-NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 557
+I V + ++ T++ G + ++++ + ++ Q+Y + I L +
Sbjct: 393 NGKIGISVPHEQYKKGFLQAQTKVFTSGVLYLDMYPVYSSKITAQNYKLDTIAKICLQQE 452
Query: 558 IPLHSWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 613
S+K + + R + K+ + L+ +RL +Q+++ +E+ARL
Sbjct: 453 KEQLSYKEIPKKFISGPSGRAVVGKYCLQDSVLV-----VRLFKQINYHYEVAEVARLAH 507
Query: 614 IQFYEVLSRGSQFRVESIMLRLSRLNNFV---AVSPSIKQRAHMRAPESLPLILEPESRL 670
+ V+ G Q ++ +L ++ N + VS +Q + +LEP++
Sbjct: 508 VTARCVVFEGQQKKIFPCILTEAKRRNMILPSMVSSHNRQGIGYKGAT----VLEPKTGY 563
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFST-CLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQ 729
Y P +V DFQSLYPS+++A+N C+ST L + G+S+S I ++K
Sbjct: 564 YAVPTVVFDFQSLYPSIMMAHNLCYSTLVLDERQIAGLSES----------DILTVK--- 610
Query: 730 QKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789
+ FV +R +L +L++ L R VK M+ S+ ++ +L +QL L
Sbjct: 611 ----LGDETHRFVKPCVRESVLGSLLKDWLAKRREVKAEMQNC-SDPMMKLLLDKKQLAL 665
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNN--------------- 834
K N YG T A G +PCV + SV GRE L ++ VN+
Sbjct: 666 KTTCNSVYGVTGAA-HGLLPCVAIAASVTCLGREMLCSTVDYVNSKMQSEQFFCEELGLT 724
Query: 835 ----TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVY 889
T + V+YGDTDS+F+ + I IA +T+ +P+KL+FEK+
Sbjct: 725 ASDFTGDLKVEVIYGDTDSIFMSVRNMANESLRRIAPMIAKHITDRLFKSPIKLEFEKIL 784
Query: 890 QPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943
P IL KKRY+G QD + KG++ VR+ C V ++K + LLF
Sbjct: 785 CPLILICKKRYIG------RQDDSLLIFKGVDLVRKTSCDFVKGVVKDIVDLLF 832
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 146 bits (368), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 132/580 (22%), Positives = 258/580 (44%), Gaps = 114/580 (19%)
Query: 433 QESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG--- 489
+++ LPE P + F S E EL F+ V+Q+ P+ GY I W +++E+
Sbjct: 409 KDAGLPE----PTVLEFDS-EFELLIAFMTLVKQYAPEFATGYNIVNFDWAFIMEKLNSI 463
Query: 490 YVLGLNLNQELSR-----ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSY 544
Y L L+ ++R I +V K R +++++ G I ++++ + ++ L SY
Sbjct: 464 YSLKLDGYGSINRGGLFKIWDVGKSGFQR----RSKVKINGLISLDMYAIATEKLKLSSY 519
Query: 545 TFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-----RLIEQL 599
+++ L+E +K + ++ + + Y I+ + ++ + + L
Sbjct: 520 KLDSVAREALNESKRDLPYKDIPGYYASGPNTRG--IIGEYCIQDSALVGKLFFKYLPHL 577
Query: 600 DFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFV----------------- 642
+ S +ARL I + + G Q R+ + +L L+ F+
Sbjct: 578 EL----SAVARLARITLTKAIYDGQQVRIYTCLLGLASSRGFILPDGGYPATFEYKDVIP 633
Query: 643 -------------AVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVII 689
+VSP+ + + +P++ Y DP++VLDF SLYPS+I
Sbjct: 634 DVGDVEEEMDEDESVSPTGTSSGRNVGYKG-ARVFDPDTGFYIDPVVVLDFASLYPSIIQ 692
Query: 690 AYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQ----QKLTISPSGVAFVDKS 745
A+N CF+T L ++ ++K+L T+ + FV +
Sbjct: 693 AHNLCFTT--------------------LTLNFETVKRLNPSDYATFTVGGKRLFFVRSN 732
Query: 746 IRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFS 805
+R +L +L++ L R ++ + S+ A+ +L +Q +K++ N YG+T
Sbjct: 733 VRESLLGVLLKDWLAMRKAIRARIPGSSSDEAV--LLDKQQAAIKVVCNSVYGFTGVA-Q 789
Query: 806 GRMPCVEVGDSVVSKGRETLQKAIETVNNT---------------------SKWQCRVVY 844
G +PC+ V +V + GR+ L + ++N ++ +V+Y
Sbjct: 790 GFLPCLYVAATVTTIGRQMLLSTRDYIHNNWAAFERFITAFPDIESSVLSQKAYEVKVIY 849
Query: 845 GDTDSMFVLAPGKTKQEAFEIGKEIANVV-TNNNPTPVKLKFEKVYQPCILQTKKRYVGY 903
GDTDS+F+ G + +IG+++A+++ T P+KL+ EK + +L TKK+Y+G
Sbjct: 850 GDTDSVFIRFKGVGVEGIAKIGEKMAHIISTALFCPPIKLECEKTFIKLLLITKKKYIGV 909
Query: 904 MYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943
+Y KG++ VR++ C ++ +K + LL
Sbjct: 910 IYGGK------VLMKGVDLVRKNNCQFINDYARKLVELLL 943
>sp|P30320|DPOL_PBCVN DNA polymerase OS=Paramecium bursaria Chlorella virus NY2A GN=DPO
PE=3 SV=1
Length = 913
Score = 145 bits (365), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 150/584 (25%), Positives = 260/584 (44%), Gaps = 43/584 (7%)
Query: 495 NLNQELSRITEVEKRNSSRDEVKNTQ---LQMPGRIVINLWRLLRHEVNLQSYTFENIMY 551
NL + L EV +R+ S + + L MPG + I+L + R NL+SY+ N+
Sbjct: 302 NLGRLLVGGGEVIERDLSSNAFGQNKFFLLDMPGVMQIDLLQWFRKNRNLESYSLNNVSK 361
Query: 552 HVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMAR 610
L ++ + + + + + Y + T + ++L++++ + +EMA
Sbjct: 362 LYLGDQ--KNDLPAMQIFEKFEGGADDRAIIAAYARKDTDLPLKLLKKMAILEDITEMAN 419
Query: 611 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 670
+ + RG Q R S ++ +R N+ P K E +L+ +
Sbjct: 420 AVKVPVDYINFRGQQVRAFSCLVGKARQMNYAI--PDDKMWTVDGKYEG-ATVLDAKKGA 476
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNVSIRSLKKL 728
Y I LDF SLYPS+I A+N T + R E+L + + ++ + + K
Sbjct: 477 YFTSIAALDFASLYPSIIRAHNMSPETLVMDKRFENLPGIEYY-----EIETGLGTFKYP 531
Query: 729 QQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR--VLHARQ 786
Q+ G++P +L ++ R K+ M E K N R + A+Q
Sbjct: 532 QKNDETGEGQ----------GVVPALLDDLAKFRKQAKKHMAEAKKNDDEFREALYDAQQ 581
Query: 787 LGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGD 846
K++ N YG+ A+ G +PCV + SV + GR+ ++ + V V+YGD
Sbjct: 582 RSYKIVMNSVYGFLGAS-RGFIPCVPIAASVTATGRKMIEHTAKRVTELLP-GSEVIYGD 639
Query: 847 TDSMFV---LAPGKTK--QEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYV 901
TDS+ + L K E F++ K +A +T + P L+FEK+Y P IL +KKRY
Sbjct: 640 TDSVMIRMKLPDDKIHDMDEQFKMAKWLAGEITKDFKAPNDLEFEKIYYPYILYSKKRYA 699
Query: 902 GYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSL-CLLFETKDLSVVKEYVEKQFS 960
+E D+ + + KG+ VRRD P +ILK+SL +LF+ + V E VE
Sbjct: 700 AIKFEDPDEKGKV-DVKGLALVRRDFSPITREILKESLDTILFKKDTPTAVTETVE-CIR 757
Query: 961 KIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVS 1020
K++ ++ T +K + GYK C P L ++ + P RVP+V +
Sbjct: 758 KVLDNEYPMEKFTMSKTLK--TGYK-NECQPHLHVSNKIFERTGFPVPS-GARVPFVYIE 813
Query: 1021 GAPGLPLIKLVKSPY-ELLQDSSLRLNSEYYITRVIIPPLERCF 1063
L + ++ Q++ L ++ +YI ++ P+ F
Sbjct: 814 DKKNLDTKQSFRAEDPTFAQENDLIVDRLFYIEHQLMKPICSLF 857
>sp|P04292|DPOL_HHV1K DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
KOS) GN=UL30 PE=1 SV=1
Length = 1235
Score = 143 bits (361), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 141/602 (23%), Positives = 258/602 (42%), Gaps = 136/602 (22%)
Query: 434 ESELPEVRTK----PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER- 488
ES L E+ + P+ + F S E E+ F+ V+Q+ P+ + GY I W +LL +
Sbjct: 421 ESHLNELAARGLPTPVVLEFDS-EFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKL 479
Query: 489 ---------GYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539
GY G + + R+ ++ + + K +++++ G + I+++ ++ ++
Sbjct: 480 TDIYKVPLDGY--GRMNGRGVFRVWDIGQSHFQ----KRSKIKVNGMVNIDMYGIITDKI 533
Query: 540 NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-----R 594
L SY + VL ++ S++ + ++ T + + Y I+ + ++ +
Sbjct: 534 KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYA--TGPAQRGVIGEYCIQDSLLVGQLFFK 591
Query: 595 LIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR--- 651
+ L+ S +ARL GI + G Q RV + +LRL+ F + P + R
Sbjct: 592 FLPHLEL----SAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGF--ILPDTQGRFRG 645
Query: 652 AHMRAPESLPL--------------------------------------------ILEPE 667
A AP+ +L+P
Sbjct: 646 AGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGAKVLDPT 705
Query: 668 SRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR---VEHLGVSDSFPFGCIDLNVSIRS 724
S + +P++V DF SLYPS+I A+N CFST R V HL + +++ V R
Sbjct: 706 SGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDY----LEIEVGGRR 761
Query: 725 LKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHA 784
L FV +R +L +L++ L R ++ + + A+ +L
Sbjct: 762 L--------------FFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAV--LLDK 805
Query: 785 RQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQC---- 840
+Q +K++ N YG+T G +PC+ V +V + GRE L E V+ ++W
Sbjct: 806 QQAAIKVVCNSVYGFTGVQ-HGLLPCLHVAATVTTIGREMLLATREYVH--ARWAAFEQL 862
Query: 841 ------------------RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPV 881
R++YGDTDS+FVL G T +G ++A+ ++ P+
Sbjct: 863 LADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTAMGDKMASHISRALFLPPI 922
Query: 882 KLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCL 941
KL+ EK + +L KK+Y+G +Y KG++ VR++ C +++ + + L
Sbjct: 923 KLECEKTFTKLLLIAKKKYIGVIYGGK------MLIKGVDLVRKNNCAFINRTSRALVDL 976
Query: 942 LF 943
LF
Sbjct: 977 LF 978
>sp|P04293|DPOL_HHV11 DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain 17)
GN=UL30 PE=1 SV=2
Length = 1235
Score = 143 bits (361), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 140/601 (23%), Positives = 256/601 (42%), Gaps = 134/601 (22%)
Query: 434 ESELPEVRTK----PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER- 488
ES L E+ + P+ + F S E E+ F+ V+Q+ P+ + GY I W +LL +
Sbjct: 421 ESHLNELAARGLPTPVVLEFDS-EFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKL 479
Query: 489 ---------GYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539
GY G + + R+ ++ + + K +++++ G + I+++ ++ ++
Sbjct: 480 TDIYKVPLDGY--GRMNGRGVFRVWDIGQSHFQ----KRSKIKVNGMVNIDMYGIITDKI 533
Query: 540 NLQSYTFENIMYHVLHERIPLHSWKLLTCWWE----HRTHLYKWMTVEHYLIRVTGIIRL 595
L SY + VL ++ S++ + ++ R + ++ + L+ +
Sbjct: 534 KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQL-FFKF 592
Query: 596 IEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR---A 652
+ L+ S +ARL GI + G Q RV + +LRL+ F + P + R A
Sbjct: 593 LPHLEL----SAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGF--ILPDTQGRFRGA 646
Query: 653 HMRAPESLPL--------------------------------------------ILEPES 668
AP+ +L+P S
Sbjct: 647 GGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGARVLDPTS 706
Query: 669 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR---VEHLGVSDSFPFGCIDLNVSIRSL 725
+ +P++V DF SLYPS+I A+N CFST R V HL + +++ V R L
Sbjct: 707 GFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDY----LEIEVGGRRL 762
Query: 726 KKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHAR 785
FV +R +L +L++ L R ++ + + A+ +L +
Sbjct: 763 --------------FFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAV--LLDKQ 806
Query: 786 QLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQC----- 840
Q +K++ N YG+T G +PC+ V +V + GRE L E V+ ++W
Sbjct: 807 QAAIKVVCNSVYGFTGVQ-HGLLPCLHVAATVTTIGREMLLATREYVH--ARWAAFEQLL 863
Query: 841 -----------------RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVK 882
R++YGDTDS+FVL G T +G ++A+ ++ P+K
Sbjct: 864 ADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTAVGDKMASHISRALFLPPIK 923
Query: 883 LKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLL 942
L+ EK + +L KK+Y+G +Y KG++ VR++ C +++ + + LL
Sbjct: 924 LECEKTFTKLLLIAKKKYIGVIYGGK------MLIKGVDLVRKNNCAFINRTSRALVDLL 977
Query: 943 F 943
F
Sbjct: 978 F 978
>sp|P09854|DPOL_HHV1S DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
SC16) GN=UL30 PE=3 SV=1
Length = 1235
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 140/601 (23%), Positives = 256/601 (42%), Gaps = 134/601 (22%)
Query: 434 ESELPEVRTK----PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER- 488
ES L E+ + P+ + F S E E+ F+ V+Q+ P+ + GY I W +LL +
Sbjct: 421 ESHLNELAARGLPTPVVLEFDS-EFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKL 479
Query: 489 ---------GYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539
GY G + + R+ ++ + + K +++++ G + I+++ ++ ++
Sbjct: 480 TDIYKVPLDGY--GRMNGRGVFRVWDIGQSHFQ----KRSKIKVNGMVSIDMYGIITDKI 533
Query: 540 NLQSYTFENIMYHVLHERIPLHSWKLLTCWWE----HRTHLYKWMTVEHYLIRVTGIIRL 595
L SY + VL ++ S++ + ++ R + ++ + L+ +
Sbjct: 534 KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQL-FFKF 592
Query: 596 IEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR---A 652
+ L+ S +ARL GI + G Q RV + +LRL+ F + P + R A
Sbjct: 593 LPHLEL----SAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGF--ILPDTQGRFRGA 646
Query: 653 HMRAPESLPL--------------------------------------------ILEPES 668
AP+ +L+P S
Sbjct: 647 GGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPDGARETAGRHVGYQGARVLDPTS 706
Query: 669 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR---VEHLGVSDSFPFGCIDLNVSIRSL 725
+ +P++V DF SLYPS+I A+N CFST R V HL + +++ V R L
Sbjct: 707 GFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDY----LEIEVGGRRL 762
Query: 726 KKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHAR 785
FV +R +L +L++ L R ++ + + A+ +L +
Sbjct: 763 --------------FFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAV--LLDKQ 806
Query: 786 QLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQC----- 840
Q +K++ N YG+T G +PC+ V +V + GRE L E V+ ++W
Sbjct: 807 QAAIKVVCNSVYGFTGVQ-HGLLPCLHVAATVTTIGREMLLATREYVH--ARWAAFEQLL 863
Query: 841 -----------------RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVK 882
R++YGDTDS+FVL G T +G ++A+ ++ P+K
Sbjct: 864 ADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTAMGDKMASHISRALFLPPIK 923
Query: 883 LKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLL 942
L+ EK + +L KK+Y+G +Y KG++ VR++ C +++ + + LL
Sbjct: 924 LECEKTFTKLLLIAKKKYIGVIYGGK------MLIKGVDLVRKNNCAFINRTSRALVDLL 977
Query: 943 F 943
F
Sbjct: 978 F 978
>sp|P07917|DPOL_HHV1A DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
Angelotti) GN=UL30 PE=1 SV=1
Length = 1235
Score = 143 bits (360), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 140/601 (23%), Positives = 256/601 (42%), Gaps = 134/601 (22%)
Query: 434 ESELPEVRTK----PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER- 488
ES L E+ + P+ + F S E E+ F+ V+Q+ P+ + GY I W +LL +
Sbjct: 421 ESHLTELAARGLPTPVVLEFDS-EFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKL 479
Query: 489 ---------GYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539
GY G + + R+ ++ + + K +++++ G + I+++ ++ ++
Sbjct: 480 TDIYKVPLDGY--GRMNGRGVFRVWDIGQSHFQ----KRSKIKVNGMVNIDMYGIITDKI 533
Query: 540 NLQSYTFENIMYHVLHERIPLHSWKLLTCWWE----HRTHLYKWMTVEHYLIRVTGIIRL 595
L SY + VL ++ S++ + ++ R + ++ + L+ +
Sbjct: 534 KLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQL-FFKF 592
Query: 596 IEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR---A 652
+ L+ S +ARL GI + G Q RV + +LRL+ F + P + R A
Sbjct: 593 LPHLEL----SAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGF--ILPDTQGRFRGA 646
Query: 653 HMRAPESLPL--------------------------------------------ILEPES 668
AP+ +L+P S
Sbjct: 647 GGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGARVLDPTS 706
Query: 669 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR---VEHLGVSDSFPFGCIDLNVSIRSL 725
+ +P++V DF SLYPS+I A+N CFST R V HL + +++ V R L
Sbjct: 707 GFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDY----LEIEVGGRRL 762
Query: 726 KKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHAR 785
FV +R +L +L++ L R ++ + + A+ +L +
Sbjct: 763 --------------FFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAV--LLDKQ 806
Query: 786 QLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQC----- 840
Q +K++ N YG+T G +PC+ V +V + GRE L E V+ ++W
Sbjct: 807 QAAIKVVCNSVYGFTGVQ-HGLLPCLHVAATVTTIGREMLLATREYVH--ARWAAFEQLL 863
Query: 841 -----------------RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVK 882
R++YGDTDS+FVL G T +G ++A+ ++ P+K
Sbjct: 864 ADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTAVGDKMASHISRALFLPPIK 923
Query: 883 LKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLL 942
L+ EK + +L KK+Y+G +Y KG++ VR++ C +++ + + LL
Sbjct: 924 LECEKTFTKLLLIAKKKYIGVIYGGK------MLIKGVDLVRKNNCAFINRTSRALVDLL 977
Query: 943 F 943
F
Sbjct: 978 F 978
>sp|O71121|DPOL_RHCM6 DNA polymerase OS=Rhesus cytomegalovirus (strain 68-1) GN=UL54 PE=3
SV=1
Length = 1035
Score = 142 bits (359), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 129/535 (24%), Positives = 238/535 (44%), Gaps = 73/535 (13%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 511
+E E+ F+ +++ P + GY I + + Y+L R L +LS +
Sbjct: 358 SEYEMLLGFLIFFQRYSPCFVTGYNINSFDFKYILTR-----LEFVYKLSPGPYSKLPAQ 412
Query: 512 SRDEVKN----------TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLH 561
R + + T++ + G +VI+++ + + + +Y + L ++
Sbjct: 413 GRFSMYSPLKKFVTTTTTKVFISGTVVIDMYPVCMAKTSSPNYKLNTMAELYLKQQKEDM 472
Query: 562 SWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
S+K + + E R + K+ + L++ L ++F +ARL I
Sbjct: 473 SYKDIPVKFISGCEGRAQVGKYCVQDAVLVK-----DLFNTINFHYEAGAIARLARIPMR 527
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESL----PLILEPESRLYTD 673
V+ G Q R+ + +L +F+ P+ K + P + + EPE Y+D
Sbjct: 528 RVIFDGQQIRIYTSLLDECACRDFIM--PNHKGADNSSEPTDVSYQGATVFEPEVGYYSD 585
Query: 674 PIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLT 733
P++V DF SLYPS+I+A+N C+ST + P G + ++ +L+ L+
Sbjct: 586 PVVVFDFASLYPSIIMAHNLCYSTFVA-----------PGGESPPESDVLTV-ELESGLS 633
Query: 734 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIA 793
FV ++R +L ++L + + R V+++M+ + + +L QL LK+
Sbjct: 634 YR-----FVKNTVRNSVLSELLTKWVSQRRAVRETMRSCH-DPVKRMLLDKEQLALKVTC 687
Query: 794 NVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQC------------- 840
N YG+T +G MPC+ + S+ GR+ L + + V C
Sbjct: 688 NAFYGFTGV-VNGMMPCLPIAASITRIGRDMLMRTSQFVEENFAEPCFLHNFFNREDYSG 746
Query: 841 -----RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVYQPCIL 894
+V+YGDTDS+FV G T E G +A+ +T P+KL+FEKV+ ++
Sbjct: 747 DPVAVKVIYGDTDSVFVCYRGVTAAALIERGPSLAHYITQCLFVDPIKLEFEKVFGSLMM 806
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLS 949
KKRY+G + + KG++ VR+ C V + + + LLF+ ++S
Sbjct: 807 ICKKRYIGKIVGETE-----LSMKGVDLVRKTSCEFVKNVTRDIIQLLFDDPEVS 856
>sp|Q6UDK1|DPOL_PSHV1 DNA polymerase catalytic subunit OS=Psittacid herpesvirus 1 (isolate
Amazon parrot/-/97-0001/1997) GN=UL30 PE=3 SV=1
Length = 1081
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 156/697 (22%), Positives = 293/697 (42%), Gaps = 114/697 (16%)
Query: 436 ELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGY-VLGL 494
+LPE +++ +E EL F+ ++Q+ P+ + GY I WG++ + + G+
Sbjct: 373 QLPEDIADHVKVCECGSEFELLLCFMTFLKQFSPEFVTGYNILGFDWGFMYNKMVNIYGM 432
Query: 495 NLN-----QELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENI 549
L+ + +S R + +N ++ G + +++ ++ ++ L SY ++
Sbjct: 433 RLDGYGKANAWGTFKVQDMPHSGRGKFRNVKIN--GIVNFDMFSIIYQKIKLCSYKLNSV 490
Query: 550 MYHVLHERIPLHSWK----LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRT 605
VL E+ S+K L E R + + ++ + +L+ ++
Sbjct: 491 AETVLGEKKHDLSYKDLPRLFALGPEERGKIGAY-CLQDSRLATKLFFKLVPHMEL---- 545
Query: 606 SEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR----AHMRAPES-- 659
S +A+L I + G Q RV + +L+ +R V P R AH +
Sbjct: 546 SAVAQLACITLTRAVFDGQQVRVFTCLLQRAR--KIGVVLPEKSDRFTFSAHAAGDQDDG 603
Query: 660 -------LPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFP 712
+L+P+ + +P++V DF SLYPS+I + N C+ST
Sbjct: 604 GRSVGYQGAKVLDPDVGFHVNPVMVFDFASLYPSIIQSNNLCYSTMTHN----------- 652
Query: 713 FGCIDLNVSIRSLKKLQQKLTISPSG--VAFVDKSIRCGILPKMLQEILDTRLMVKQSMK 770
+I L++ L + G FV + +R +L ++L + L+ R ++ +
Sbjct: 653 ------PAAIAHLEEGTDYLRVEVQGRVFFFVREHVRRSLLAELLTDWLNMRKALRAQIP 706
Query: 771 EYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIE 830
+ + +L +Q+ +K+I N YG+T +G +PC+EV +V + GR+ L K +
Sbjct: 707 -LAATEDEKVLLDMQQIAIKVICNSVYGFTGV-MNGMLPCLEVAATVTAIGRDMLLKTKQ 764
Query: 831 TV--------------------NNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIA 870
+ ++ V+YGDTDS+FV G G +A
Sbjct: 765 YIEENWREYSNIRERFFPAMAHEGVPQYSVAVIYGDTDSVFVSFKGVPVACLVASGDAMA 824
Query: 871 NVVTNN-NPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCP 929
+TN PVKL+ EKV+ ++ KK+Y+G ++ +G++ VR+ C
Sbjct: 825 AEITNALFRRPVKLECEKVFTKLLMIAKKKYIGVIHTGK------MMMRGVDMVRKSNCR 878
Query: 930 AVSKILKKSLCLLFETKD-------------------LSVVKEYVEKQFSKIISGRISVQ 970
V+ K L L+F +D LS + V + + + S + V+
Sbjct: 879 FVNDTAKALLNLVFYDEDVATAAASSALVDVSALPRGLSKLGARVREAHAALSSPALDVR 938
Query: 971 DMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPL--- 1027
D E Y + + L++ R+ + + P+V +R+ YVI+ APG +
Sbjct: 939 DFVMTSELSKAPKYYASSKLAHLTVYRKKIARNEE-PPQVKDRIEYVII--APGQRIQGD 995
Query: 1028 ------IKLVKSPYE---LLQDSSLRLNSEYYITRVI 1055
LV S E + LRLN++YY + ++
Sbjct: 996 PFREKETDLVSSLAEDPNWVTAHKLRLNADYYFSALL 1032
>sp|P27727|DPOLA_TRYBB DNA polymerase alpha catalytic subunit OS=Trypanosoma brucei brucei
PE=3 SV=1
Length = 1339
Score = 140 bits (354), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 167/668 (25%), Positives = 280/668 (41%), Gaps = 105/668 (15%)
Query: 447 MHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQEL-----S 501
+H NE+ L + F E + DPDI++G+ I GY +E LN QEL S
Sbjct: 501 VHRFINERALLTWFAETLAALDPDIIVGHNI----IGYTVE----TLLNRYQELNIVRWS 552
Query: 502 RITEVEKRNSSRDEVKNTQLQMP-----GRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
I ++ R R + N L + GR+V++ + L R +Y
Sbjct: 553 TIGRLDVRRFPRIQGNNFNLAIEKEACVGRLVVDTYLLAREYYKSTNYKL---------- 602
Query: 557 RIPLHSWKLLTCWWEHRTHLYKWMTV--EHYLIRVTGIIRLIEQL--------------D 600
+ L + + ++R H TV + ++ + ++ QL D
Sbjct: 603 -LSLSTQMEIKGITDNRGHFEPGSTVLVKDSMMSSEALCPILLQLLNCAVLSFNVASFLD 661
Query: 601 FIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPES- 659
I T + L G + L R+E ++L +N V+P K+R R E
Sbjct: 662 VIPLTKRLTLLAGNLWSRTLYGARSERIEYLLLHA--FHNLKFVTPDKKKRDLKRGREDD 719
Query: 660 -----------LPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVS 708
++LEP+S LY++ I++LDF SLYPS+I +N C++T + R E+ VS
Sbjct: 720 DDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNSLYPSLIQEFNVCYTT-IDRDENT-VS 777
Query: 709 DSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQS 768
P + + +S + ILPK+++ ++D+R +K+
Sbjct: 778 AEVP--------------PPESLICLSCRAAGLPSPCLHKCILPKVIRGLVDSRREIKRM 823
Query: 769 MKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA 828
MK K L +L RQL LKL AN YG +S R + + V +GR LQ
Sbjct: 824 MKSEKDPGNLA-MLEIRQLALKLTANSMYGCLGFEYS-RFYAQPLAELVTRQGRLALQNT 881
Query: 829 IETVNNTSKWQCRVVYGDTDSMFVLAP-----GKTKQEAFEIGKEIANVVTNNNPTPVKL 883
+E + S RV+YGDTDS+ + K + FEI ++ N ++L
Sbjct: 882 VELIPQISP-SIRVIYGDTDSVMIQTGIKDDIVKVRNLGFEIKGKV-----NQRYQSLEL 935
Query: 884 KFEKVYQPCILQTKKRYVGYMYETADQDKPIY--EAKGIETVRRDGCP----AVSKILKK 937
+ V++ +L KK+Y + +Y E KG++ VRRD CP +LK+
Sbjct: 936 DIDGVFRAMLLLRKKKYAALSVVDWQGEGKVYKREVKGLDMVRRDWCPLSQHVSDAVLKR 995
Query: 938 SLCLLFETKDLSVVKEYVEKQFSKIISGRI-SVQDMTFAKEYRGQAGYKPGACVPALSLA 996
L L V +Y++ + SG + +++ +K + G P +A
Sbjct: 996 ILNAEGGEDILDFVIKYMKGVAQDVRSGNVYPLEEFVISKSLTKEPESYHGTGYPHAVVA 1055
Query: 997 RQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY---ELLQDSSLRLNSEYYITR 1053
+ + + RV + +PYVI G + Y E+ + L ++ E+Y++
Sbjct: 1056 LR--MKQRKEGVRVGDLIPYVICEGDEHID-----DKAYHIDEVRRSDGLSVDVEWYLSS 1108
Query: 1054 VIIPPLER 1061
+ PP+ R
Sbjct: 1109 QLYPPVMR 1116
>sp|P28858|DPOL_EHV1B DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
Ab4p) GN=30 PE=3 SV=1
Length = 1220
Score = 140 bits (352), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 153/685 (22%), Positives = 292/685 (42%), Gaps = 141/685 (20%)
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER---GYVLGLNLNQE 499
+P + F S E EL F+ ++Q+ P+ GY I W Y++ + Y + L+ +
Sbjct: 429 RPTVLEFDS-EYELLVAFLTFLKQYSPEFATGYNIVNFDWAYIVNKVTSVYNIKLDGYGK 487
Query: 500 LSRITEVEKRNSSRDEV-KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
++ + + + + K +++++ G I ++++ + ++ L SY + ++ VL E
Sbjct: 488 FNKGGLFKVWDIATNHFQKKSKVKINGLISLDMYSVATEKLKLPSYKLDAVVGDVLGEHK 547
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIG----RTSEMARLFGI 614
+K + ++ + + Y I+ + RL+ +L F S +A+L I
Sbjct: 548 IDLPYKEIPSYYAGGPD--RRGVIGEYCIQDS---RLVGKLFFKYLPHLELSAVAKLARI 602
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR---APESLPLILEPESRLY 671
V+ G Q RV + +L+L+R NF+ P ++R + A E+ L ++ +S +
Sbjct: 603 TLTRVIFDGQQIRVYTCLLKLARERNFIL--PDNRRRFDSQADAASETSELAMDSQSHAF 660
Query: 672 --------------------------------------------------TDPIIVLDFQ 681
DP++V DF
Sbjct: 661 DSTDEPDGVDGTPDAAGSGATSENGGGKPGVGRAVGYQGAKVLDPVSGFHVDPVVVFDFA 720
Query: 682 SLYPSVIIAYNYCFST-CLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVA 740
SLYPS+I A+N CF+T L V+ G+ S + ++ QKL
Sbjct: 721 SLYPSIIQAHNLCFTTLALDEVDLAGLQPSVDYSTFEVG---------DQKLF------- 764
Query: 741 FVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYT 800
FV IR +L +L++ L R V+ + A+ +L +Q +K+I N YG+T
Sbjct: 765 FVHAHIRESLLGILLRDWLAMRKAVRARIPTSTPEEAV--LLDKQQSAIKVICNSVYGFT 822
Query: 801 AANFSGRMPCVEVGDSVVSKGRETLQKAIETVN--------------------NTSKWQC 840
+G +PC+ + +V + GR+ L K + V+ N +
Sbjct: 823 GVA-NGLLPCLRIAATVTTIGRDMLLKTRDYVHSRWATRELLEDNFPGAIGFRNHKPYSV 881
Query: 841 RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVYQPCILQTKKR 899
RV+YGDTDS+F+ G T + E+G ++ ++ + P+KL+ EK +Q +L TKK+
Sbjct: 882 RVIYGDTDSVFIKFVGLTYEGVSELGDAMSRQISADLFRAPIKLECEKTFQRLLLITKKK 941
Query: 900 YVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVV-------- 951
Y+G + + K + KG++ VR++ C ++ + + LL +D++
Sbjct: 942 YIGVI----NGGKML--MKGVDLVRKNNCSFINLYARHLVDLLLYDEDVATAAAEVTDVP 995
Query: 952 -KEYVEK---------------QFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSL 995
E+V + +++I + + V++ E +P L++
Sbjct: 996 PAEWVGRPLPSGFDKFGRVLVEAYNRITAPNLDVREFVMTAELSRSPESYTNKRLPHLTV 1055
Query: 996 ARQWVLTDPRAEPRVSERVPYVIVS 1020
+ + + P V ER+PYVIV+
Sbjct: 1056 YFKLAMRNEEL-PSVKERIPYVIVA 1079
>sp|P33609|DPOLA_MOUSE DNA polymerase alpha catalytic subunit OS=Mus musculus GN=Pola1 PE=1
SV=2
Length = 1465
Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 146/651 (22%), Positives = 278/651 (42%), Gaps = 59/651 (9%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
+ K +++ + E+ L F+ V + DPDIL+G+ I + LL+R + +
Sbjct: 606 ISKKNMKVEIAATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQRINECKVPYWSK 665
Query: 500 LSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERI 558
+ R+ + GR++ ++ + ++ +SY ++ +L ERI
Sbjct: 666 IGRLRRSNMPKLGSRSGFGERNATCGRMICDVEISAKELIHCKSYHLSELVQQILKTERI 725
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
+ + + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 726 VIPTENIRNMYSESSYLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSR 782
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSI---------------------KQRAHMRAP 657
L G R E ++L NN++ I ++ +A
Sbjct: 783 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQKLGDEDEEIDGDTNKYKKGRKKAT 842
Query: 658 ESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCID 717
+ L+L+P+ Y I++LDF SLYPS+I +N CF+T + RV
Sbjct: 843 YAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT-VQRVTS------------- 888
Query: 718 LNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAA 777
V + + Q+++ P D ++ GILP+ ++++++ R VKQ MK+ N
Sbjct: 889 -EVQKATEDEEQEQIPELP------DPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPD 941
Query: 778 LQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSK 837
L RQ LKL AN YG ++S R + V KGRE L + T + K
Sbjct: 942 LVLQYDIRQKALKLTANSMYGCLGFSYS-RFYAKPLAALVTYKGREIL---MHTKDMVQK 997
Query: 838 WQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTK 897
V+YGDTDS+ + +E F++G ++ + V N +++ + V++ +L K
Sbjct: 998 MNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEV-NKLYKLLEIDIDAVFKSLLLLKK 1056
Query: 898 KRYVGYMYETADQDKPI--YEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYV 955
K+Y + E I E KG++ VRRD C + + + + E +
Sbjct: 1057 KKYAALVVEPTSDGNYITKQELKGLDIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENI 1116
Query: 956 EKQFSKI----ISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRV 1010
+K+ +I ++G + V K + Y +P + +A W+ + + +
Sbjct: 1117 QKRLIEIGENVLNGSVPVSQFEINKALTKDPQDYPDRKSLPHVHVAL-WINSQGGRKVKA 1175
Query: 1011 SERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
+ V YVI L + +P +L + +L ++++YY+ + I P + R
Sbjct: 1176 GDTVSYVICQDGSNLTATQRAYAPEQLQKLDNLAIDTQYYLAQQIHPVVAR 1226
>sp|Q6S6P1|DPOL_EHV1V DNA polymerase catalytic subunit OS=Equine herpesvirus 1 (strain
V592) GN=30 PE=3 SV=1
Length = 1220
Score = 139 bits (350), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 153/685 (22%), Positives = 292/685 (42%), Gaps = 141/685 (20%)
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER---GYVLGLNLNQE 499
+P + F S E EL F+ ++Q+ P+ GY I W Y++ + Y + L+ +
Sbjct: 429 RPTVLEFDS-EYELLVAFLTFLKQYSPEFATGYNIVNFDWAYIVNKVTSVYNIKLDGYGK 487
Query: 500 LSRITEVEKRNSSRDEV-KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
++ + + + + K +++++ G I ++++ + ++ L SY + ++ VL E
Sbjct: 488 FNKGGLFKVWDIATNHFQKKSKVKINGLISLDMYSVATEKLKLPSYKLDAVVGDVLGEHK 547
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIG----RTSEMARLFGI 614
+K + ++ + + Y I+ + RL+ +L F S +A+L I
Sbjct: 548 IDLPYKEIPSYYAGGPD--RRGVIGEYCIQDS---RLVGKLFFKYLPHLELSAVAKLARI 602
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR---APESLPLILEPESRLY 671
V+ G Q RV + +L+L+R NF+ P ++R + A E+ L ++ +S +
Sbjct: 603 TLTRVIFDGQQIRVYTCLLKLARERNFIL--PDNRRRFDSQADAASETSELAMDSQSHAF 660
Query: 672 --------------------------------------------------TDPIIVLDFQ 681
DP++V DF
Sbjct: 661 DSTDEPDGVDGTPDAAGSGATSENGGGKPGVGRAVGYQGAKVLDPVSGFHVDPVVVFDFA 720
Query: 682 SLYPSVIIAYNYCFST-CLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVA 740
SLYPS+I A+N CF+T L V+ G+ S + ++ QKL
Sbjct: 721 SLYPSIIQAHNLCFTTLALDEVDLAGLQPSVNYSTFEVG---------DQKLF------- 764
Query: 741 FVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYT 800
FV IR +L +L++ L R V+ + A+ +L +Q +K+I N YG+T
Sbjct: 765 FVHAHIRESLLGILLRDWLAMRKAVRARIPTSTPEEAV--LLDKQQSAIKVICNSVYGFT 822
Query: 801 AANFSGRMPCVEVGDSVVSKGRETLQKAIETVN--------------------NTSKWQC 840
+G +PC+ + +V + GR+ L K + V+ N +
Sbjct: 823 GVA-NGLLPCLRIAATVTTIGRDMLLKTRDYVHSRWATRELLEDNFPGAIGFRNHKPYSV 881
Query: 841 RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVYQPCILQTKKR 899
RV+YGDTDS+F+ G T + E+G ++ ++ + P+KL+ EK +Q +L TKK+
Sbjct: 882 RVIYGDTDSVFIKFVGLTYEGVSELGDAMSRQISADLFRAPIKLECEKTFQRLLLITKKK 941
Query: 900 YVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVV-------- 951
Y+G + + K + KG++ VR++ C ++ + + LL +D++
Sbjct: 942 YIGVI----NGGKML--MKGVDLVRKNNCSFINLYARHLVDLLLYDEDVATAAAKVTDVP 995
Query: 952 -KEYVEK---------------QFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSL 995
E+V + +++I + + V++ E +P L++
Sbjct: 996 PAEWVGRPLPSGFDKFGRVLVEAYNRITAPNLDVREFVMTAELSRSPESYTNKRLPHLTV 1055
Query: 996 ARQWVLTDPRAEPRVSERVPYVIVS 1020
+ + + P V ER+PYVIV+
Sbjct: 1056 YFKLAMRNEEL-PSVKERIPYVIVA 1079
>sp|O93746|DPOL2_AERPE DNA polymerase 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM 11879
/ JCM 9820 / NBRC 100138 / K1) GN=polB PE=3 SV=3
Length = 803
Score = 139 bits (349), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 167/699 (23%), Positives = 301/699 (43%), Gaps = 115/699 (16%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L V+A +I S+ + PDP D V I G+ G E E+ E +
Sbjct: 184 LRVMAFDIEVYSK-MRTPDPKKDPVIMI---------------GLQQAGGEIEILEAEDR 227
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
++K++ + F+E V+ DPD+++GY W YL+ER VLG+ L
Sbjct: 228 --------SDKKVIAGFVERVKSIDPDVIVGYNQNRFDWPYLVERARVLGVKLA------ 273
Query: 504 TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR--HEVNLQSYTFENIMYHV----LHER 557
V +R+ + GR+ ++L HEV ++ T E + ++ + ER
Sbjct: 274 --VGRRSVEPQPGLYGHYSVSGRLNVDLLDFAEELHEVKVK--TLEEVADYLGVVKIGER 329
Query: 558 IPLHSWKLLTCWWE--HRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQ 615
+ L W++ W + R L K++ + V + L E+ F+ +E++++ G+
Sbjct: 330 VTLEWWQIGEYWDDPSKREILRKYLRDD-----VRSTMGLAEK--FLPFGAELSQVSGLP 382
Query: 616 FYEVLSRGSQFRVESIMLR-LSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+V++ FR+E ++R ++L V P+ +R+ R + ++L P+ ++ D
Sbjct: 383 LDQVMAASVGFRLEWRLIREAAKLGELV---PNRVERSEGRYAGA--IVLRPKPGVHED- 436
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTI 734
I VLDF S+YP++++ YN T +R ++ ++
Sbjct: 437 IAVLDFASMYPNIMVKYNVGPDTL-----------------------VRPGEEYGEEEVY 473
Query: 735 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIAN 794
+ V + G K+L+ L R ++ MK++ ++ ++L RQ +KL+AN
Sbjct: 474 TAPEVGHKFRKSPPGFFKKILERFLSWRRQIRSEMKKHPPDSPEYKLLDERQKAIKLLAN 533
Query: 795 VTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVL- 853
+YGY + R C E ++V + GR ++ AI V+YGDTDS+FV
Sbjct: 534 ASYGYMGWPHA-RWYCRECAEAVTAWGRSIIRTAIRKAGELG---LEVIYGDTDSLFVKN 589
Query: 854 APGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCIL-QTKKRYVGYMYETADQDK 912
P K ++ + +E+ +K +KVY+ + KKRYVG T D
Sbjct: 590 DPEKVERLIRFVEEELG----------FDIKVDKVYRRVFFTEAKKRYVGL---TVDGK- 635
Query: 913 PIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDM 972
+ G E VR D + K ++ +T + +YV K+ G++ ++ +
Sbjct: 636 --IDVVGFEAVRGDWSELAKETQFKVAEIVLKTGSVDEAVDYVRNIIEKLRRGQVDMRKL 693
Query: 973 TFAKEY-RGQAGY--KPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIK 1029
K R + Y + AL + R + +P A ++ YV+ G+ PL
Sbjct: 694 VIWKTLTRPPSMYEARQPHVTAALLMERAGIKVEPGA------KIGYVVTKGSG--PLYT 745
Query: 1030 LVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGT 1068
K PY S ++ EYY+ + ++P R G
Sbjct: 746 RAK-PY--FMASKEEVDVEYYVDKQVVPAALRILQYFGV 781
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.319 0.133 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 431,128,298
Number of Sequences: 539616
Number of extensions: 17949596
Number of successful extensions: 47367
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 106
Number of HSP's successfully gapped in prelim test: 75
Number of HSP's that attempted gapping in prelim test: 46376
Number of HSP's gapped (non-prelim): 533
length of query: 1200
length of database: 191,569,459
effective HSP length: 129
effective length of query: 1071
effective length of database: 121,958,995
effective search space: 130618083645
effective search space used: 130618083645
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 67 (30.4 bits)