Query psy5921
Match_columns 1200
No_of_seqs 417 out of 1754
Neff 6.1
Searched_HMMs 46136
Date Fri Aug 16 21:52:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5921.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5921hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0968|consensus 100.0 2E-192 4E-197 1699.2 62.4 1127 47-1195 305-1487(1488)
2 PTZ00166 DNA polymerase delta 100.0 2E-154 5E-159 1473.2 78.5 820 327-1189 198-1046(1054)
3 KOG0970|consensus 100.0 4E-152 1E-156 1355.7 54.1 831 319-1196 459-1379(1429)
4 KOG0969|consensus 100.0 1E-150 3E-155 1305.5 44.8 803 343-1188 226-1056(1066)
5 TIGR00592 pol2 DNA polymerase 100.0 2E-119 4E-124 1168.3 68.4 694 319-1064 437-1172(1172)
6 PHA03036 DNA polymerase; Provi 100.0 1E-108 3E-113 1017.2 60.5 658 382-1064 158-986 (1004)
7 PRK05762 DNA polymerase II; Re 100.0 6E-108 1E-112 1029.7 62.4 635 335-1074 114-779 (786)
8 PHA02528 43 DNA polymerase; Pr 100.0 1E-106 3E-111 1011.5 58.6 653 381-1070 103-870 (881)
9 COG0417 PolB DNA polymerase el 100.0 3E-104 6E-109 995.1 59.3 629 379-1076 149-782 (792)
10 PRK05761 DNA polymerase I; Rev 100.0 3.5E-99 8E-104 943.9 53.4 561 380-1074 184-776 (787)
11 cd05534 POLBc_zeta DNA polymer 100.0 5.5E-99 1E-103 892.3 39.5 447 623-1070 1-450 (451)
12 cd05533 POLBc_delta DNA polyme 100.0 5.2E-89 1.1E-93 796.9 37.8 384 657-1066 2-392 (393)
13 cd05532 POLBc_alpha DNA polyme 100.0 2.8E-83 6.1E-88 750.8 33.6 384 655-1074 5-393 (400)
14 cd05536 POLBc_B3 DNA polymeras 100.0 4.3E-81 9.4E-86 725.8 37.0 367 656-1072 2-369 (371)
15 PF00136 DNA_pol_B: DNA polyme 100.0 3.5E-81 7.6E-86 750.4 25.3 436 623-1073 1-455 (466)
16 cd05537 POLBc_Pol_II DNA polym 100.0 3.9E-77 8.5E-82 690.5 34.9 348 658-1067 3-371 (371)
17 cd05530 POLBc_B1 DNA polymeras 100.0 2E-73 4.3E-78 657.9 35.9 350 656-1064 11-371 (372)
18 cd00145 POLBc DNA polymerase t 100.0 1.8E-73 3.9E-78 652.0 33.1 321 657-1064 2-323 (323)
19 smart00486 POLBc DNA polymeras 100.0 2.8E-69 6E-74 644.6 45.7 455 382-856 1-471 (471)
20 cd05538 POLBc_Pol_II_B DNA pol 100.0 9.5E-71 2.1E-75 632.1 30.6 337 657-1061 2-343 (347)
21 cd05531 POLBc_B2 DNA polymeras 100.0 1.3E-68 2.8E-73 616.1 31.8 335 656-1066 3-352 (352)
22 PHA03334 putative DNA polymera 100.0 1.8E-65 3.8E-70 629.6 41.4 543 406-966 274-1019(1545)
23 PHA02524 43A DNA polymerase su 100.0 8.8E-55 1.9E-59 511.6 34.8 365 381-776 103-482 (498)
24 KOG1798|consensus 100.0 1.4E-52 2.9E-57 508.7 33.4 660 378-1076 240-1143(2173)
25 cd05535 POLBc_epsilon DNA poly 100.0 3E-48 6.4E-53 457.1 31.4 302 747-1062 220-612 (621)
26 cd05778 DNA_polB_zeta_exo inac 100.0 5.9E-38 1.3E-42 343.5 25.3 216 382-597 2-231 (231)
27 cd05777 DNA_polB_delta_exo DED 100.0 1E-36 2.2E-41 333.9 25.3 219 380-604 3-228 (230)
28 PHA02523 43B DNA polymerase su 100.0 3.6E-37 7.9E-42 342.1 19.8 285 780-1072 37-381 (391)
29 cd05776 DNA_polB_alpha_exo ina 100.0 1.3E-34 2.8E-39 318.0 17.5 220 382-607 1-234 (234)
30 cd05780 DNA_polB_Kod1_like_exo 100.0 3.1E-30 6.7E-35 276.0 23.5 195 382-599 1-195 (195)
31 TIGR00592 pol2 DNA polymerase 100.0 5.6E-33 1.2E-37 362.0 -7.9 385 380-796 194-620 (1172)
32 PF03104 DNA_pol_B_exo1: DNA p 100.0 2.8E-29 6.1E-34 287.2 18.0 223 322-549 91-325 (325)
33 cd05781 DNA_polB_B3_exo DEDDy 100.0 3.1E-28 6.8E-33 259.0 23.0 184 382-599 1-188 (188)
34 cd05784 DNA_polB_II_exo DEDDy 100.0 8.4E-28 1.8E-32 256.3 22.8 188 382-597 1-193 (193)
35 cd05779 DNA_polB_epsilon_exo D 100.0 2E-27 4.3E-32 255.3 22.9 194 383-596 1-203 (204)
36 cd05785 DNA_polB_like2_exo Unc 100.0 2.7E-27 5.9E-32 255.3 21.5 188 380-596 5-206 (207)
37 cd05160 DEDDy_DNA_polB_exo DED 99.9 9.4E-27 2E-31 249.4 21.5 197 386-597 1-199 (199)
38 cd05783 DNA_polB_B1_exo DEDDy 99.9 1.4E-23 3E-28 225.9 21.5 185 381-597 2-202 (204)
39 PHA02563 DNA polymerase; Provi 99.8 3.3E-20 7.3E-25 225.3 21.8 403 457-921 50-543 (630)
40 cd05782 DNA_polB_like1_exo Unc 99.8 2E-18 4.3E-23 186.8 19.1 164 400-598 45-208 (208)
41 PF10108 DNA_pol_B_exo2: Predi 99.4 2.9E-12 6.4E-17 137.3 18.0 171 400-603 3-173 (209)
42 PF14260 zf-C4pol: C4-type zin 99.3 5.9E-12 1.3E-16 114.1 6.7 71 1107-1177 1-73 (73)
43 PF13482 RNase_H_2: RNase_H su 99.0 1.5E-09 3.3E-14 112.8 11.8 158 387-599 1-163 (164)
44 COG3359 Predicted exonuclease 98.6 5.3E-07 1.1E-11 97.3 13.7 162 383-599 97-265 (278)
45 PF08996 zf-DNA_Pol: DNA Polym 98.5 1E-07 2.2E-12 102.0 4.0 94 1104-1198 18-136 (188)
46 PHA02735 putative DNA polymera 97.8 0.00019 4.1E-09 82.4 13.6 134 545-698 170-310 (716)
47 PRK06309 DNA polymerase III su 97.8 0.00032 6.9E-09 77.8 14.8 154 385-599 3-162 (232)
48 TIGR03491 RecB family nuclease 97.7 0.0004 8.7E-09 84.5 15.4 164 385-598 285-456 (457)
49 PF08490 DUF1744: Domain of un 97.7 0.00096 2.1E-08 79.4 17.0 260 601-903 121-396 (396)
50 cd06136 TREX1_2 DEDDh 3'-5' ex 97.6 0.0012 2.5E-08 70.3 15.0 137 387-557 2-156 (177)
51 PRK06310 DNA polymerase III su 97.6 0.0013 2.8E-08 73.9 15.3 135 384-553 7-146 (250)
52 PRK06807 DNA polymerase III su 97.6 0.0011 2.5E-08 76.6 15.0 133 383-553 7-145 (313)
53 TIGR01405 polC_Gram_pos DNA po 97.5 0.0013 2.8E-08 87.7 15.7 132 384-553 190-327 (1213)
54 PRK07740 hypothetical protein; 97.5 0.0011 2.4E-08 74.1 13.0 158 382-599 57-222 (244)
55 PRK08517 DNA polymerase III su 97.4 0.0013 2.8E-08 74.1 13.0 134 382-555 66-204 (257)
56 smart00479 EXOIII exonuclease 97.4 0.0027 5.8E-08 65.9 14.0 158 385-599 1-163 (169)
57 PRK07883 hypothetical protein; 97.4 0.002 4.3E-08 80.2 14.6 157 383-599 14-178 (557)
58 PRK07942 DNA polymerase III su 97.4 0.0051 1.1E-07 68.3 16.3 162 382-599 4-176 (232)
59 PRK06063 DNA polymerase III su 97.3 0.0037 7.9E-08 72.5 15.5 134 382-553 13-151 (313)
60 PF03175 DNA_pol_B_2: DNA poly 97.3 5.7E-05 1.2E-09 91.8 0.5 50 737-802 323-372 (459)
61 PRK05711 DNA polymerase III su 97.2 0.0032 6.9E-08 70.3 12.8 165 382-599 2-172 (240)
62 PRK09146 DNA polymerase III su 97.2 0.0026 5.7E-08 70.9 11.9 160 382-599 45-223 (239)
63 TIGR01406 dnaQ_proteo DNA poly 97.2 0.0034 7.4E-08 69.4 12.6 136 385-553 1-142 (225)
64 PRK05601 DNA polymerase III su 97.2 0.0043 9.3E-08 72.5 13.8 194 382-599 44-245 (377)
65 cd06138 ExoI_N N-terminal DEDD 97.2 0.0028 6.2E-08 67.7 11.1 102 387-495 1-110 (183)
66 cd06131 DNA_pol_III_epsilon_Ec 97.2 0.0039 8.4E-08 65.1 12.0 159 387-599 2-166 (167)
67 cd06130 DNA_pol_III_epsilon_li 97.1 0.0039 8.4E-08 64.1 11.7 127 387-553 2-134 (156)
68 cd06127 DEDDh DEDDh 3'-5' exon 97.1 0.0064 1.4E-07 61.6 13.2 127 387-550 1-133 (159)
69 PRK06195 DNA polymerase III su 97.1 0.0038 8.2E-08 72.3 12.5 130 384-553 1-137 (309)
70 PRK09145 DNA polymerase III su 97.0 0.013 2.9E-07 63.5 14.2 101 382-491 27-132 (202)
71 TIGR01407 dinG_rel DnaQ family 96.9 0.01 2.2E-07 77.8 15.5 131 385-553 1-137 (850)
72 PRK08074 bifunctional ATP-depe 96.9 0.01 2.2E-07 78.4 15.4 132 385-553 4-141 (928)
73 cd06125 DnaQ_like_exo DnaQ-lik 96.8 0.0058 1.3E-07 58.5 8.7 69 387-495 1-69 (96)
74 TIGR00573 dnaq exonuclease, DN 96.7 0.012 2.6E-07 64.7 11.6 160 383-599 6-173 (217)
75 PRK05168 ribonuclease T; Provi 96.6 0.03 6.5E-07 61.4 13.6 139 383-553 16-171 (211)
76 TIGR01298 RNaseT ribonuclease 96.6 0.076 1.6E-06 57.7 16.5 164 384-599 8-188 (200)
77 cd06134 RNaseT DEDDh 3'-5' exo 96.5 0.035 7.5E-07 59.8 13.3 162 386-599 7-185 (189)
78 PRK07246 bifunctional ATP-depe 96.4 0.033 7.1E-07 72.6 14.5 130 384-553 7-142 (820)
79 KOG1798|consensus 96.3 0.29 6.3E-06 64.5 21.0 269 596-904 1586-1869(2173)
80 PF01612 DNA_pol_A_exo1: 3'-5' 96.2 0.043 9.3E-07 57.1 11.8 148 385-599 21-171 (176)
81 PRK07748 sporulation inhibitor 96.1 0.046 9.9E-07 59.7 11.8 165 383-599 3-176 (207)
82 PRK11779 sbcB exonuclease I; P 96.1 0.036 7.8E-07 67.6 11.8 105 382-492 4-116 (476)
83 PRK06722 exonuclease; Provisio 96.0 0.12 2.6E-06 59.1 14.7 163 384-599 5-177 (281)
84 PRK07247 DNA polymerase III su 96.0 0.08 1.7E-06 57.4 12.8 92 384-486 5-101 (195)
85 cd06133 ERI-1_3'hExo_like DEDD 96.0 0.11 2.4E-06 54.3 13.5 163 387-599 2-175 (176)
86 cd06144 REX4_like DEDDh 3'-5' 95.7 0.074 1.6E-06 55.1 10.6 88 387-486 1-93 (152)
87 cd06137 DEDDh_RNase DEDDh 3'-5 95.2 0.12 2.6E-06 54.2 10.3 123 387-557 1-139 (161)
88 COG0847 DnaQ DNA polymerase II 95.2 0.11 2.3E-06 57.8 10.4 135 384-555 13-153 (243)
89 COG2176 PolC DNA polymerase II 95.2 0.033 7.2E-07 71.9 6.8 132 383-553 420-558 (1444)
90 PRK05359 oligoribonuclease; Pr 95.0 0.1 2.2E-06 55.9 9.1 104 385-494 4-122 (181)
91 cd06149 ISG20 DEDDh 3'-5' exon 94.7 0.18 3.9E-06 52.7 9.8 88 387-486 1-93 (157)
92 PRK09182 DNA polymerase III su 94.6 0.1 2.2E-06 60.2 8.3 99 381-490 34-141 (294)
93 cd06145 REX1_like DEDDh 3'-5' 94.6 0.23 4.9E-06 51.5 10.1 121 387-557 1-128 (150)
94 cd06146 mut-7_like_exo DEDDy 3 94.4 0.53 1.1E-05 50.9 12.9 160 382-599 20-191 (193)
95 cd06135 Orn DEDDh 3'-5' exonuc 94.4 0.1 2.2E-06 55.4 7.3 101 387-493 2-117 (173)
96 PRK00448 polC DNA polymerase I 94.1 0.34 7.3E-06 66.3 12.8 132 384-553 419-556 (1437)
97 cd06141 WRN_exo DEDDy 3'-5' ex 91.9 1.9 4.1E-05 45.2 12.1 150 383-599 17-168 (170)
98 cd06139 DNA_polA_I_Ecoli_like_ 89.6 9.8 0.00021 40.2 15.1 152 385-599 6-166 (193)
99 cd06129 RNaseD_like DEDDy 3'-5 87.7 5.1 0.00011 41.9 11.2 145 384-599 13-159 (161)
100 PTZ00315 2'-phosphotransferase 87.6 8 0.00017 48.5 14.3 108 380-491 52-175 (582)
101 PRK05755 DNA polymerase I; Pro 87.0 6.9 0.00015 52.0 14.3 148 383-599 314-465 (880)
102 PRK07983 exodeoxyribonuclease 86.3 4.3 9.2E-05 45.0 10.1 115 386-553 2-121 (219)
103 PHA03144 helicase-primase prim 81.5 88 0.0019 40.4 19.4 245 789-1065 451-720 (746)
104 cd00007 35EXOc 3'-5' exonuclea 79.9 34 0.00074 34.2 13.1 108 453-599 39-151 (155)
105 PF00929 RNase_T: Exonuclease; 79.5 1.2 2.7E-05 44.9 2.3 98 387-492 1-105 (164)
106 cd06148 Egl_like_exo DEDDy 3'- 78.2 26 0.00055 38.0 12.1 149 383-599 9-173 (197)
107 PRK10829 ribonuclease D; Provi 73.8 40 0.00087 40.4 13.1 145 382-599 20-166 (373)
108 PHA03181 helicase-primase prim 66.7 3E+02 0.0066 35.8 18.7 244 789-1065 460-735 (764)
109 COG4068 Uncharacterized protei 64.6 5.7 0.00012 34.6 2.5 23 1104-1126 8-31 (64)
110 smart00474 35EXOc 3'-5' exonuc 62.8 1.7E+02 0.0038 29.7 13.8 102 457-599 64-167 (172)
111 PF13240 zinc_ribbon_2: zinc-r 62.0 4.2 9E-05 29.1 1.0 22 1106-1127 1-22 (23)
112 PF09889 DUF2116: Uncharacteri 60.7 7.6 0.00016 34.3 2.6 23 1105-1127 4-27 (59)
113 PF13248 zf-ribbon_3: zinc-rib 59.6 5.1 0.00011 29.3 1.2 23 1105-1127 3-25 (26)
114 PF10571 UPF0547: Uncharacteri 57.4 6.1 0.00013 29.1 1.3 22 1106-1127 2-23 (26)
115 PRK14714 DNA polymerase II lar 55.2 12 0.00025 50.4 4.1 48 1103-1171 666-718 (1337)
116 PHA03140 helicase-primase prim 47.6 7.8E+02 0.017 32.3 20.0 137 789-939 458-613 (772)
117 PRK04023 DNA polymerase II lar 43.8 24 0.00053 46.5 4.3 34 912-945 370-403 (1121)
118 PRK14559 putative protein seri 37.2 21 0.00046 45.7 2.4 47 1105-1171 2-50 (645)
119 PF09538 FYDLN_acid: Protein o 35.9 19 0.00041 35.7 1.3 25 1104-1128 9-36 (108)
120 TIGR03826 YvyF flagellar opero 32.7 48 0.001 34.2 3.7 65 1046-1128 34-104 (137)
121 PF14952 zf-tcix: Putative tre 32.4 22 0.00049 29.4 1.0 29 1149-1177 10-40 (44)
122 PF03833 PolC_DP2: DNA polymer 28.8 19 0.00041 46.7 0.0 51 1097-1168 648-698 (900)
123 TIGR01388 rnd ribonuclease D. 27.2 5.5E+02 0.012 30.8 11.9 102 457-599 59-162 (367)
124 PF03337 Pox_F12L: Poxvirus F1 25.9 1.4E+02 0.0031 38.1 6.8 99 381-491 189-297 (651)
125 PF12773 DZR: Double zinc ribb 25.0 36 0.00079 28.4 1.1 21 1107-1127 1-21 (50)
126 TIGR02300 FYDLN_acid conserved 23.7 43 0.00094 34.0 1.5 25 1104-1128 9-36 (129)
127 PRK06266 transcription initiat 23.0 93 0.002 33.5 4.0 42 1105-1146 118-169 (178)
128 COG5151 SSL1 RNA polymerase II 22.2 46 0.001 38.2 1.5 23 1104-1126 308-330 (421)
129 COG0615 TagD Cytidylyltransfer 21.6 1.2E+02 0.0026 31.6 4.1 34 461-495 79-113 (140)
130 PF14205 Cys_rich_KTR: Cystein 21.2 53 0.0011 28.6 1.3 23 1105-1127 5-37 (55)
131 PRK00420 hypothetical protein; 20.9 55 0.0012 32.7 1.6 25 1103-1127 22-49 (112)
132 PF07282 OrfB_Zn_ribbon: Putat 20.1 81 0.0018 28.1 2.4 30 1099-1128 23-56 (69)
No 1
>KOG0968|consensus
Probab=100.00 E-value=1.9e-192 Score=1699.24 Aligned_cols=1127 Identities=38% Similarity=0.597 Sum_probs=952.9
Q ss_pred ccceeeecccC-CCCcceeeeccccccchhhHHHHHhhccCCCcC--------------CcceeEEeeccCCCCCHHHHH
Q psy5921 47 SESYLFTQNKS-YDSPTIVAKQTLLPLSGELEKQIISAKSSSTEG--------------SSVVTSYIKLKCKPISRALVV 111 (1200)
Q Consensus 47 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~pps~~ei~ 111 (1200)
+|-+++..-+. -.++.-|++-+..-.++|++.--..+.-+.+.+ +--++-+.+|++++|.++|+|
T Consensus 305 se~~~~~~~~~~~Et~~~~s~~q~~~~~~E~~~f~~~~~~~~s~~~s~~~e~~Vs~~S~~~~~~~~~~~~~~~~~~~~~l 384 (1488)
T KOG0968|consen 305 SEKLLLNEIKEKHETNRRVSRFQGVLPSNEFCLFYSGARTNESDIDSQNREEHVSQISMSQKGNWSNPPLTAIQMKKETL 384 (1488)
T ss_pred HHHHHHhhhccCCCcccccccccccccchHHHHHHhcCCCCcccccCcchhhccccccccccccccCCCccccchhhhhh
Confidence 46666654332 223444554444435677765544443333322 223445569999999999999
Q ss_pred HHHhhcCCccccccCCCCCCCCCCC--cceecceeEEecCCccCccccccccc---cchHHHHHHHhhhc----cCCCCC
Q psy5921 112 EELINTDVTNILSQEPFYSNFKDIT--RTEITNKFVHLEAAPVALLEEHRCLF---SGLSEWRQRVCLEV----TGDATR 182 (1200)
Q Consensus 112 ~~~~~~~i~~~~~q~pf~Sn~~Dv~--~~Evg~~~l~v~~~~~~dl~ef~~~~---~gl~~wr~~~~~~~----~g~~~~ 182 (1200)
.++..+..+..+.+++++||+++++ ++|+++...+++++..|+.+||.+.+ .+|+.||.++..++ +|..+.
T Consensus 385 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~~~nS~a~~~~~~s~~~~l~s~~k~~~~~~~~~s~~~~l~ 464 (1488)
T KOG0968|consen 385 PNIESILVSSATQLESSNSGTLFLSREEVEICDDLGIVLKSVFNSYAERTSTISPLSPLRSAKKMAPKFRQERSPSLQLD 464 (1488)
T ss_pred hhhhhccccccccccccCCCccccccccccccchhcccccccccccccccccccccccccchhhhcchhhcCCCCCcccc
Confidence 9999999999999999999999999 99999999999999999999999988 89999999988887 455552
Q ss_pred --Chhhhhhh---ccccC-CCceEEecCCCCCChHHHHHHHHHHHHhhhhcCCCCCcchhhHHhhhhccccccCCccccc
Q psy5921 183 --NVNDIMES---FQHIF-PKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCSQKGIVDVK 256 (1200)
Q Consensus 183 --~~~~~~~~---~~~~~-~~~~~i~P~~~pPs~~~v~~wl~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (1200)
.+..+++. -++.+ +++.+|+++.+.|..++++-|.+|.+++....+.. -.+.+... +.+.+ .+
T Consensus 465 ~~~~~~~a~~~~~~~~v~a~~ts~~~~~~~~~~~e~~k~~~q~~~~~~~~~~~~--d~s~~~~~--------~~~p~-~d 533 (1488)
T KOG0968|consen 465 DGMVTRIAESQQTRSSVGASKTSIIEQPGEDPMEEDLKYREQAPEEGIPERQLE--DDSNEALS--------DGHPK-ND 533 (1488)
T ss_pred CCcceehhhhhcCccccCCCCCccCCCCCcchhHHHhHHhhcCccccccccccc--ccchhhHh--------hcCCc-cc
Confidence 23333332 22222 58999999999999999999999999999876421 01111100 01111 11
Q ss_pred cccccchhhcccCCCCCCCCcccCCcccccCCCCCCCCCCCCCCCCCCCCCccchhhhhcCCCCCCCCcC--CCChhhHH
Q psy5921 257 CFEESSALERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRESNQSPPNKDSIHEAEITHPDCSKSSQI--DFNPDLFK 334 (1200)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~n~~l~e 334 (1200)
..+-.|+ .++++..-+ ..+...-.-..++.+.|..+.....+-...+ |....|.+.+.++.. ..+++.+.
T Consensus 534 ~klQ~ps-----D~~~~~~~~-~~s~~P~~~~~~~~~~S~~e~~s~~nv~~tg--E~l~~~s~pd~~~s~k~~~t~s~~d 605 (1488)
T KOG0968|consen 534 YKLQPPS-----DDEDSNTMS-LKSQKPVERAEADDVDSEVEDDSELNVKGTG--EVLEIHSDPDDQSSEKWALTPSAYD 605 (1488)
T ss_pred cccCCCC-----Cccccchhh-hhccCchhhhhhccCCccccchhhcCccccc--eeeEeecCcccchhhhhccChHHHH
Confidence 1110110 111110000 0000000111233333333333333333333 445557554555544 66666777
Q ss_pred HHHHHhhc-CCCcccccccc---cccCCcCCcceEeecccCcccccccccCCcceEEEEEEEeccCCCCCCCCCCCcEEE
Q psy5921 335 SFIRKQLE-TPKRRICDSYA---IDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKA 410 (1200)
Q Consensus 335 ~f~~~~~~-~g~cwl~i~~~---i~~~~~~s~~~fev~~~~~~~~~~~~~~p~LtvlSlDIeT~t~~~l~Pdp~~DeIia 410 (1200)
++.. |++ .-----++++. +.+++..+.+.|+.++.+.+..++.+..+.||++|+++|+.+|+++.|||..|+|.+
T Consensus 606 ~~~~-~~~~~~~~~~~~~~e~s~i~~p~~~s~~~~~~~v~~~q~~~~~~~~~~Lt~lsiElha~sr~dl~PDP~~D~V~~ 684 (1488)
T KOG0968|consen 606 QNFK-SMNEQLFDAAKIENELSQIRGPTAKSVYTFETSVAGAQKSKPVEQTQLLTILSIELHATSRGDLEPDPVFDSVAS 684 (1488)
T ss_pred hhHH-HHhhhhhcccchhhhhhhccCCccccccccchhhhcccccccccccceeeeeeeeccccccCCCCCCcccccchh
Confidence 7776 766 21112233333 999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEecCCCC-CC--Cc-eEEEEEecCC--CCC---CcC-CCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCcccc
Q psy5921 411 IFYYLYTCPP-EE--DR-KVGIILIGQE--SEL---PEV-RTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETL 480 (1200)
Q Consensus 411 Is~~v~~d~~-~d--~~-~~gv~~v~~~--~~~---p~~-~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~F 480 (1200)
|+|++.++.+ .| .+ ..|+++++.. +.. +.+ ...+++|.++.+|++|++++++++.++||||++||+++++
T Consensus 685 l~~~vq~dtp~pd~~si~~~gv~Vv~~~~~ds~~~t~~~~~~~~~~V~~~~sE~elf~ev~~~i~q~DPDIl~GyEi~~~ 764 (1488)
T KOG0968|consen 685 LFLCVQEDTPMPDADSIVSVGVIVVDKVCPDSHVQTTTLGGIYGCRVVVMESELELFEEVAKLIVQYDPDILLGYEIHNL 764 (1488)
T ss_pred hhhhhccCCCCCcccceeeeeEEEEeccCccccccccccCCcCCceEEEehhHHHHHHHHHHHHHhcCcceeeeeeeccc
Confidence 9999998855 33 23 6788888743 211 221 2347899999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHhCCCCcccccccccccccccCcc-ccc----cceeeecceEEeehHHHHHhhhcCCCCCHHHHHHHHcC
Q psy5921 481 SWGYLLERGYVLGLNLNQELSRITEVEKRNSSRD-EVK----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555 (1200)
Q Consensus 481 DlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~-~~~----~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~Va~~vLg 555 (1200)
+||||++|++.||+++...++|++.....+.+.. ..| .+.+.|.||+++++||++|.+++|++|+|++|++++|+
T Consensus 765 SWGyl~eR~~~l~~di~~~lsRv~~~~~~n~~d~~~ewg~tt~S~i~i~GR~~lNiWRilR~eV~L~nYtlEsv~~nVL~ 844 (1488)
T KOG0968|consen 765 SWGYLIERAKLLGIDISRDLSRVKCYEKTNESDDEREWGYTTISGINIVGRHVLNIWRILRSEVALTNYTLESVVFNVLR 844 (1488)
T ss_pred chHHHHHHHHHhcchHHHHHhcCCChhhhhhhhhhhhccceeeccccccchhhhhHHHHHhhhhhhhhccHHHHHHHHHH
Confidence 9999999999999999988999986554444332 122 56789999999999999999999999999999999999
Q ss_pred CCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhc
Q psy5921 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRL 635 (1200)
Q Consensus 556 ~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~ 635 (1200)
++.|.+++..+++||+++....|+.++.|++.++.++++|+.++++|.++.||||++||+|.+|++||||+||||||||.
T Consensus 845 kk~P~~~~~~Lt~~~~s~~~~~r~~~l~y~l~Ra~~NlelLsq~d~i~k~~E~ARv~GIdF~sV~tRGSQ~rVESmllRi 924 (1488)
T KOG0968|consen 845 KKIPMFDFAVLTRWWKSKRSAERNDVLNYLLSRARLNLELLSQLDWILKNSEMARVIGIDFHSVLTRGSQFRVESMLLRI 924 (1488)
T ss_pred hhcCCCcHHHHHHHHhcccHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhHHHHHhhcceeeEEeeccchhhHHHHHHHH
Confidence 99999999999999999987889999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcc
Q psy5921 636 SRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGC 715 (1200)
Q Consensus 636 a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~ 715 (1200)
||++|||+|+|+.+|++.|++++|.||||||++.||++||+||||||||||||||||+||+||+|++.+++..+++++|+
T Consensus 925 Ak~~Nyi~~SPs~kQv~~q~A~EcvPLVMEPeS~fY~~PViVLDFQSLYPSivIAYNyCySTcLG~v~~l~~~~e~~LG~ 1004 (1488)
T KOG0968|consen 925 AKPMNYIAPSPSHKQVAMQGAPECVPLVMEPESAFYFDPVIVLDFQSLYPSIVIAYNYCYSTCLGKVGNLNQMNEIKLGV 1004 (1488)
T ss_pred hcccccccCCccHHHHhhcCCccccceeecchhhhccCceEEEEchhhcchHHHhHHHHHHHhhhHHHhhccccceeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888889999
Q ss_pred cccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhccccccc
Q psy5921 716 IDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANV 795 (1200)
Q Consensus 716 ~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS 795 (1200)
..+..+++.+.+.+++|+++|||++|||+++|+|+||+||+++|++|.|||+.||+.+++..++++||+||+||||+||+
T Consensus 1005 s~~s~~~dil~~~~ndV~isPNgv~yVK~sVRkgvLpkmLeEIL~tRiMVKkaMK~~~~~~~L~RiLnaRQLALKLiANV 1084 (1488)
T KOG0968|consen 1005 SKYSLPPDILVLAKNDVTISPNGVMYVKPSVRKGVLPKMLEEILATRIMVKKAMKRTKDNKKLKRILNARQLALKLIANV 1084 (1488)
T ss_pred eeccCCHHHHHHHhcceeeCCCceEEechhhhhhhHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHhhhHHHHHHHHhhc
Confidence 99999999999888999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred ccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHc
Q psy5921 796 TYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTN 875 (1200)
Q Consensus 796 ~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~ 875 (1200)
+||||+|+|||||||.|+|++|+++|||+|++||++|+....||++||||||||+||.++|.+.+|||+||++|++.|++
T Consensus 1085 TYGYTsA~FSGRMPCaElADsIV~~GRETLEraIe~Vn~~d~w~AkVVYGDTDSmFVlL~GaT~eeAF~IGq~iAe~VT~ 1164 (1488)
T KOG0968|consen 1085 TYGYTSANFSGRMPCAELADSIVQKGRETLERAIEMVNRGDYWGAKVVYGDTDSMFVLLPGATVEEAFEIGQEIAEAVTN 1164 (1488)
T ss_pred cccccccccCCCCchHHHHHHHHHhhHHHHHHHHHHHhcCCcCCeEEEEcCCCceEEEecCccHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHH
Q psy5921 876 NNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYV 955 (1200)
Q Consensus 876 ~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl 955 (1200)
.||+|+.|+|||||+||+|++||||+|++||+++|..|.||+||||+||||+||++.++++++|++||+++|++.|+.|+
T Consensus 1165 ~NP~PV~LKfEKVY~PCvL~tKKRYVG~~YEs~~Qk~PiFDAKGIETVRRDtcPavakilEksL~LlFetkdlS~IK~y~ 1244 (1488)
T KOG0968|consen 1165 SNPKPVVLKFEKVYHPCVLLTKKRYVGFMYESPNQKEPIFDAKGIETVRRDTCPAVAKILEKSLRLLFETKDLSKIKKYL 1244 (1488)
T ss_pred cCCCCeEEEeeeecccceeeeccceeeeeeccCcccCCccccccceeeeccCcHHHHHHHHHHHHHHhhcccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCChhhhhHhhcccCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChh
Q psy5921 956 EKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035 (1200)
Q Consensus 956 ~~~~~kl~~g~v~~~dlii~K~lr~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~ 1035 (1200)
++++.++++|+++++||+|+|++|....|+.+..+|++.+|+|++..||+.+|++||||||||++|.+|.++++|+++|+
T Consensus 1245 q~~~~ki~~Gkvs~qDF~FaKEvRl~~~~~~~~~pP~avva~r~i~~DpR~EPqygERVPYvII~G~pG~~L~~~vvsP~ 1324 (1488)
T KOG0968|consen 1245 QNVCNKIQEGKVSFQDFCFAKEVRLEKYYSASAAPPGAVVARRRITKDPRHEPQYGERVPYVIIDGVPGSTLYSRVVSPE 1324 (1488)
T ss_pred HHHHHHHhhCCcchhhheeeeeecceeccccccCCchHHHHHHHhccCCccCccccccCCeEEEeCCCCCcHHHHhcCHH
Confidence 99999999999999999999999964456666677889999999999999999999999999999999999999999999
Q ss_pred hhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhhhhcCCcceeecCccccccccccccccccccccccccCCcccc
Q psy5921 1036 ELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQ 1115 (1200)
Q Consensus 1036 e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~C~~C~~~~~ 1115 (1200)
||++++.+++|..|||+|||+|||.|+|+++|+|+..||++||+..+.+. .........+||+.|+.+.+|+.|-.. .
T Consensus 1325 efL~~~~~rLn~~YYINk~iiPpL~Rvf~LiG~~v~~W~~Empk~krtS~-~~te~e~~~~tid~f~ts~hC~~c~~~-~ 1402 (1488)
T KOG0968|consen 1325 EFLRNPTYRLNTFYYINKQIIPPLDRVFNLIGADVDSWYHEMPKSKRTSL-KLTETEKGGITIDTFVTSKHCSSCCSR-I 1402 (1488)
T ss_pred HHhcCCceeccceeeehhhccchHHHHhhhcccchhhHHHhccccccccc-cccccccCCceeeEEEeeccccchhcc-c
Confidence 99999899999999999999999999999999999999999998544422 122334445689999999999997332 4
Q ss_pred cCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHcccCcCCC-C---CccccCCCCCceeEeecchhhhh-hHHHHH
Q psy5921 1116 NNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRS-T---SNDCISLDCPVLYRKTQITRDLD-QLSYVL 1190 (1200)
Q Consensus 1116 ~~~~~C~~C~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~~~~-~---~~~C~~~dC~v~y~~~~~~~~~~-~~~~~~ 1190 (1200)
+..++|.+|.++|+.+++.+..+.+.+|+++.++.++|++|++.. + .+.|.|.+|||||.|.++++.+. |..++.
T Consensus 1403 ~~~~lC~~Clqnp~~~a~~~v~~~~~l~re~~~L~~iCr~Cs~~~~~~~~~v~C~S~~C~V~y~r~k~er~l~~qae~~~ 1482 (1488)
T KOG0968|consen 1403 GSTQLCSDCLQNPSATALALVQKGRELERERSQLITICRSCSGSSQRDGQVVKCNSLTCPVFYTRSKVERYLRAQAETAH 1482 (1488)
T ss_pred ccchhHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcccccccccccccccCchhhhHHHHHHHHHhhHHHHH
Confidence 677899999999999999999999999999999999999999653 3 57999999999999999999888 778888
Q ss_pred HHHHh
Q psy5921 1191 SLCDS 1195 (1200)
Q Consensus 1191 ~l~~~ 1195 (1200)
..|++
T Consensus 1483 k~l~~ 1487 (1488)
T KOG0968|consen 1483 KMLGS 1487 (1488)
T ss_pred HHhcc
Confidence 77653
No 2
>PTZ00166 DNA polymerase delta catalytic subunit; Provisional
Probab=100.00 E-value=2.2e-154 Score=1473.16 Aligned_cols=820 Identities=29% Similarity=0.462 Sum_probs=719.7
Q ss_pred CCChhhHHHHHHHhhc-CCCcccccccc-c--cc-CCcCCcceEeecccCccc--ccc---cccCCcceEEEEEEEeccC
Q psy5921 327 DFNPDLFKSFIRKQLE-TPKRRICDSYA-I--DA-MTPDTTGDYQMGLDNLNE--VTS---HVENYYLTVLAVEIHAISR 396 (1200)
Q Consensus 327 ~~n~~l~e~f~~~~~~-~g~cwl~i~~~-i--~~-~~~~s~~~fev~~~~~~~--~~~---~~~~p~LtvlSlDIeT~t~ 396 (1200)
+.|-.....|+. -++ +|++|++++.+ . .. ....|+|++|+.++.... ... ...+|||++|||||||.++
T Consensus 198 EsnI~f~lRFmI-D~~I~g~~Wi~i~~~~~~~~~~~~~~s~c~~E~~~~~~~l~~~~~~~~~~~~pplrilSfDIE~~~~ 276 (1054)
T PTZ00166 198 ESNVPFVLRFLI-DNNITGGSWLTLPKGKYKIRPPKKKTSTCQIEVDCSYEDLIPLPPEGEYLTIAPLRILSFDIECIKL 276 (1054)
T ss_pred ecCCCHHHHHHh-ccCCCceeEEEecCcceeecccccCCCcceEEEEEehhheeecccccccCCCCCcEEEEEEEEECCC
Confidence 677788889999 667 89999999876 2 22 235799999887543222 111 1236999999999999988
Q ss_pred CCC-CCCCCCCcEEEEEEEecCCCCCC-CceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEe
Q psy5921 397 ALL-KPDPAYDEVKAIFYYLYTCPPEE-DRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIG 474 (1200)
Q Consensus 397 ~~l-~Pdp~~DeIiaIs~~v~~d~~~d-~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvG 474 (1200)
.+. ||+|+.|||++|++++...+... +..+.++++.++... .+..|..|.+|++||.+|+++|+.+|||||+|
T Consensus 277 ~g~~FP~~~~D~IIqIs~~~~~~g~~~~~~~r~vftl~~c~~i-----~g~~V~~f~sE~eLL~~f~~~I~~~DPDII~G 351 (1054)
T PTZ00166 277 KGLGFPEAENDPVIQISSVVTNQGDEEEPLTKFIFTLKECASI-----AGANVLSFETEKELLLAWAEFVIAVDPDFLTG 351 (1054)
T ss_pred CCCCCCCCCCCcEEEEEEEEeeCCCccCCcceEEEecCccccC-----CCceEEEeCCHHHHHHHHHHHHHhcCCCEEEe
Confidence 774 99999999999999876655432 445567777776543 35678999999999999999999999999999
Q ss_pred cCcccccHHHHHHHHHHhCCCCccccccccccc----ccccCc---cccccceeeecceEEeehHHHHHhhhcCCCCCHH
Q psy5921 475 YEIETLSWGYLLERGYVLGLNLNQELSRITEVE----KRNSSR---DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFE 547 (1200)
Q Consensus 475 yNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~----~~~~s~---~~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsLe 547 (1200)
||+++||||||++||+.+|++.|..|||++... ...++. +.+....+.+.||+++|+|+.++++++|.||+|+
T Consensus 352 YNi~~FDlpYL~~Ra~~l~i~~~~~lgR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~iDl~~~~~~~~kl~sYsL~ 431 (1054)
T PTZ00166 352 YNIINFDLPYLLNRAKALKLNDFKYLGRIKSTRSVIKDSKFSSKQMGTRESKEINIEGRIQFDVMDLIRRDYKLKSYSLN 431 (1054)
T ss_pred cCCcCCcHHHHHHHHHHhCCCchhhcCcccCCCccccccccccccccccccceeEeeeEEEEEHHHHHHHhcCcCcCCHH
Confidence 999999999999999999999888899986432 111221 2233556899999999999999999999999999
Q ss_pred HHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCcchhh
Q psy5921 548 NIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFR 627 (1200)
Q Consensus 548 ~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~r 627 (1200)
+||+++||++++++++..|.+||+.+ ...+++++.||++|+.++++|+++|++++++.||||++|++|.++++||+|+|
T Consensus 432 ~Vs~~~Lg~~K~dv~~~~i~~~~~~~-~~~~~~l~~Y~l~Da~L~~~L~~kl~~~~~~~e~arv~gip~~~v~~rG~q~k 510 (1054)
T PTZ00166 432 YVSFEFLKEQKEDVHYSIISDLQNGS-PETRRRIAVYCLKDAILPLRLLDKLLLIYNYVEMARVTGTPIGWLLTRGQQIK 510 (1054)
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHhcC-hhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhccCCChHHhhcCCcchh
Confidence 99999999999999999999999754 36689999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCC
Q psy5921 628 VESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGV 707 (1200)
Q Consensus 628 vEslLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~ 707 (1200)
||++|+|+|+++||++|++...+.. ....+.||+||||++|||++||++|||+||||||||+|||||||+++..+..
T Consensus 511 v~s~Llr~~~~~~~viP~~~~~~~~-~~~~yeGg~VleP~~G~y~~pV~vLDF~SLYPSIiia~NlcysTl~~~~~~~-- 587 (1054)
T PTZ00166 511 VTSQLLRKCKKLNYVIPTVKYSGGG-SEEKYEGATVLEPKKGFYDEPIATLDFASLYPSIMIAHNLCYSTLVPPNDAN-- 587 (1054)
T ss_pred HHHHHHHHHHhcCeeccCchhcccc-ccCCCCCceeecCCCCCeeCceEEeecCCcccHHHHhcCCCcceeecchhhc--
Confidence 9999999999999999887653222 2356779999999999999999999999999999999999999998643210
Q ss_pred CCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHH
Q psy5921 708 SDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQL 787 (1200)
Q Consensus 708 ~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ 787 (1200)
..+ .+.+..+|+|..|+++++++||||++|++|+++|+++|+.||+.+ |+.++++||+||+
T Consensus 588 -----------~~~-------~~~~~~~p~g~~Fv~~~~r~Gilp~iL~~Ll~~R~~~K~~mk~~~-d~~~~~~ld~rQ~ 648 (1054)
T PTZ00166 588 -----------NYP-------EDTYVTTPTGDKFVKKEVRKGILPLIVEELIAARKKAKKEMKDEK-DPLLKKVLNGRQL 648 (1054)
T ss_pred -----------cCC-------CcceeecCCCceeeecCCCCcccHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHH
Confidence 001 245778999999999999999999999999999999999999876 8999999999999
Q ss_pred hcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccC------cCcceEEeccCCceeEecCCCCHHH
Q psy5921 788 GLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTS------KWQCRVVYGDTDSMFVLAPGKTKQE 861 (1200)
Q Consensus 788 ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~------~~g~~VIYGDTDSvfV~~~~~~~~e 861 (1200)
|||++|||+|||+|++++|||||.++|++||++||++|++|++++|+.+ +||++|||||||||||++++.+.+|
T Consensus 649 AlKi~aNS~YG~~G~~~~gr~~c~~iA~sIT~~GR~~i~~t~~~ie~~~~~~~g~~~g~~VIYGDTDSvfV~~~~~~~~e 728 (1054)
T PTZ00166 649 ALKISANSVYGYTGAQVGGQLPCLEVSTSITSFGRQMIDKTKELVEKHYTKANGYKHDATVIYGDTDSVMVKFGTDDIQE 728 (1054)
T ss_pred hhhhhccccccccccccCCccccHHHHHHHHHHHHHHHHHHHHHHHHhccccccCcCCeEEEecCCCceEEEeCCccHHH
Confidence 9999999999999999879999999999999999999999999999842 4699999999999999999999999
Q ss_pred HHHHHHHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHH
Q psy5921 862 AFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCL 941 (1200)
Q Consensus 862 a~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~ 941 (1200)
|+++|+++++.||+.||+||+|||||||.+++|++||||||+.|++++ ..+++++||+|+||||||++++++++++|++
T Consensus 729 a~~~g~e~a~~Is~~~~~pi~LefEkvy~~~ll~~KKrYag~~~~~~~-~~~k~d~KGie~vRRD~c~~~k~~~~~vl~~ 807 (1054)
T PTZ00166 729 AMDLGKEAAERISKKFLKPIKLEFEKVYCPYLLMNKKRYAGLLYTNPE-KYDKIDCKGIETVRRDNCLLVQQMVETVLNK 807 (1054)
T ss_pred HHHHHHHHHHHHHHhcCCCcEEEEeeeeeeeeecccceEEEEEEecCC-CCceeeeeeeEEEeccchHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998655 3478999999999999999999999999999
Q ss_pred HhccCCHHHHHHHHHHHHHHHHcCCCChhhhhHhhcccCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeC
Q psy5921 942 LFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSG 1021 (1200)
Q Consensus 942 Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~lr~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g 1021 (1200)
||.++|++++++|+++++.+|++|++|+++|+|+|+|++ ++|+. .+|||++|+||+++|++..|++||||+|||++|
T Consensus 808 il~~~d~~~a~~~~~~~~~~l~~~~v~i~~lvi~k~l~k-~~Y~~--~~phv~~A~rl~~rd~~~~p~~GdrI~YViv~~ 884 (1054)
T PTZ00166 808 ILIEKDVESAIEFTKGKISDLLQNRIDISLLVITKSLGK-DDYEG--RLAHVELAKKLRQRDPGSAPNVGDRVSYVIVKG 884 (1054)
T ss_pred HHccCCHHHHHHHHHHHHHHHHcCCCCHHHEEEEEEech-hhCCC--CCcHHHHHHHHHHhCcCcCCCCCCEEEEEEEEC
Confidence 999999999999999999999999999999999999965 78975 379999999999999999999999999999999
Q ss_pred CCCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhhhhc-CCcceeecCccccccccccccccc
Q psy5921 1022 APGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN-LPRKLHVYLPSVLNERKKKSTISQ 1100 (1200)
Q Consensus 1022 ~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w~~~-~~~~~~~~~~~~~~~~~~~~~i~~ 1100 (1200)
.++.++.+|+++|.+++++ +++||++|||+ ||+|||+|||+++|.|+.+||.. +++.... ..+.+++|++
T Consensus 885 ~~~~~~~~ra~~p~~~~~~-~~~iD~~YYi~-ql~~pl~Ri~~~i~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~ 955 (1054)
T PTZ00166 885 AKGAPQYERAEDPLYVLEN-NIPIDTQYYLD-QIKNPLLRIFEGVMDNPDSLFSGEHTRHITI-------SSSSKGGLSK 955 (1054)
T ss_pred CCCcchhhhccCHHHHHhc-CCCCCHHHHHH-HHHHHHHHHHHHhhcCHHHHhccCccceeee-------cCCCcccHHH
Confidence 8888899999999998865 78999999999 99999999999999999999973 3333222 1234679999
Q ss_pred ccc-ccccccCCcccccCCCCCccc-ccchhhhHHHHHHHHHHHHHHHHHHHHHcccCcCC-CCCccccCCCCCceeEee
Q psy5921 1101 YFA-SVNCVCCNQMTQNNKGVCDAC-LNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGR-STSNDCISLDCPVLYRKT 1177 (1200)
Q Consensus 1101 ~~~-~~~C~~C~~~~~~~~~~C~~C-~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~~~-~~~~~C~~~dC~v~y~~~ 1177 (1200)
|++ +.+|++|+..+ ...++|.+| ..+++..+..++.+++.+|.++..+|.+|++|+|. +.++.|.|.|||+||+|.
T Consensus 956 ~~~~~~~c~~c~~~~-~~~~~c~~c~~~~~~~~~~~~~~~~~~~e~~~~~~~~~c~~c~g~~~~~~~c~~~dc~i~y~r~ 1034 (1054)
T PTZ00166 956 FVKKQLQCLGCKSVI-KEGALCDNCNQNKEPSIYGKKLAKRRHKEAEYSQLWTQCQRCQGSLHQEVICTNRDCPIFYRRK 1034 (1054)
T ss_pred HHhcCcccCCCCCCC-CCCCcCccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCcccCCCCchhheeh
Confidence 985 89999999976 345899999 67777888899999999999999999999999964 468999999999999999
Q ss_pred cchhhhhhHHHH
Q psy5921 1178 QITRDLDQLSYV 1189 (1200)
Q Consensus 1178 ~~~~~~~~~~~~ 1189 (1200)
|.+++++++.--
T Consensus 1035 k~~~~~~~~~~~ 1046 (1054)
T PTZ00166 1035 KVQKDLAELQEL 1046 (1054)
T ss_pred hHHHHHHHHHHH
Confidence 999888876543
No 3
>KOG0970|consensus
Probab=100.00 E-value=4.4e-152 Score=1355.65 Aligned_cols=831 Identities=21% Similarity=0.310 Sum_probs=704.4
Q ss_pred CCCCCCcC-CCChhhHHHHHHHhhc-CCCcccccccccccCCcCCcceEeecccCcccccccc----cCCcceEEEEEEE
Q psy5921 319 DCSKSSQI-DFNPDLFKSFIRKQLE-TPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHV----ENYYLTVLAVEIH 392 (1200)
Q Consensus 319 ~~~~~~~~-~~n~~l~e~f~~~~~~-~g~cwl~i~~~i~~~~~~s~~~fev~~~~~~~~~~~~----~~p~LtvlSlDIe 392 (1200)
.+.+|||+ |+||+.||.|++ +|+ ||||||+|++.=.+++++|||+|||.+..|+++..+. .+|||++|||.|+
T Consensus 459 kgdsfshvfgt~tn~lE~fll-~rKimGPCWlkv~~~s~~~~~~SwCk~Ev~v~sP~nI~~~~~~~a~~Ppl~llsL~i~ 537 (1429)
T KOG0970|consen 459 KGDSFSHVFGTNTNPLERFLL-SRKIMGPCWLKVKGYSDPPRNASWCKVEVTVKSPQNITVVCSKKAPPPPLTLLSLNIR 537 (1429)
T ss_pred ccchHHHHhccCccHHHHHHH-hccccCceEEEeecCCCCCCCccceeeEEEecCCcceEEeecCCCCCCCeeEEEeeee
Confidence 56789999 999999999999 888 9999999998888999999999999999999988543 2899999999999
Q ss_pred eccCCCCCCCCCCCcEEEEEEEecCCCCCC-C-----ceE-EEEEecCCCCC-CcCC-----CCCeEEEEcCCHHHHHHH
Q psy5921 393 AISRALLKPDPAYDEVKAIFYYLYTCPPEE-D-----RKV-GIILIGQESEL-PEVR-----TKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 393 T~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d-~-----~~~-gv~~v~~~~~~-p~~~-----~~~~~V~~~~nEkeLL~~ 459 (1200)
|. ++|..+++||++|+..+++....+ + ... .+.+.+|.+.+ |.++ .....|..+.+|++||.+
T Consensus 538 T~----~N~k~~~~Eiv~is~l~~~~~~id~p~p~~~~~~~~c~l~rP~~~~fP~g~~ela~~k~~~v~~~~sErALLs~ 613 (1429)
T KOG0970|consen 538 TS----MNPKQNKNEIVMISMLCFHNFSIDKPAPAPAFPRHFCVLTRPPGTSFPLGLKELAKQKLSKVVLHNSERALLSH 613 (1429)
T ss_pred eh----hccccchhhhhhhhhhhcccccccCCCCCCcccCcceeEecCCCCcCCchHHHHHHhccCceEEecCHHHHHHH
Confidence 99 788889999999999998877644 1 122 24556777665 7764 223459999999999999
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh-h
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH-E 538 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~-e 538 (1200)
|++.++..|||||+|||+.+|++.+|++|+..++++.|+++||+...+..+++.+..+.....++||++||+ ..+.+ .
T Consensus 614 fla~~~~~dpD~iVgHn~~~~~l~VLl~R~~~~Kip~WS~IgRLrrS~~~kfg~~s~~~e~~~~aGRl~CD~-~~~a~~l 692 (1429)
T KOG0970|consen 614 FLAMLNKEDPDVIVGHNIQGFYLDVLLSRLHALKIPNWSSIGRLRRSWPPKFGRSSSFGEFFIIAGRLMCDL-NLAAREL 692 (1429)
T ss_pred HHHHhhccCCCEEEEeccccchHHHHHHHHHHhcCcchhhhhhhhhccccccCCcccccccccccceEEeeh-HHHHHhh
Confidence 999999999999999999999999999999999999999999998766666655444555566999999999 55554 4
Q ss_pred hcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchh
Q psy5921 539 VNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618 (1200)
Q Consensus 539 l~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~ 618 (1200)
+++.||+|.++++.+|+.....+...++..+|.++. .+..++++++.|+.+.++|+.+|++++++.||++|+|+.|.+
T Consensus 693 ik~~S~~LseL~q~~l~~eR~~i~~~~i~~~y~~s~--~L~~ll~~~~~d~~~~l~i~~~l~~LpLs~qlTnIaGni~~R 770 (1429)
T KOG0970|consen 693 IKAQSYSLSELSQQILKEERKEINANEIPKMYEDSK--SLTYLLEHTITDAELILQIMFRLNALPLSKQLTNIAGNIWAR 770 (1429)
T ss_pred hccccccHHHHHHHHHhhhcccCCHhHhhhhccChH--HHHHHHHHHhHHHHHHHHHHHHhccchHHHHHHHHHhHHHHH
Confidence 689999999999999985333444788888888774 488899999999999999999999999999999999999999
Q ss_pred hccCcchhhhhhhhhhccccccccccCCChhhh-----------------cccCCCCCCCeeeccCCCcccCCeEEeecc
Q psy5921 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR-----------------AHMRAPESLPLILEPESRLYTDPIIVLDFQ 681 (1200)
Q Consensus 619 vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~-----------------~~~~~~~~GglVleP~~G~Y~~pV~vLDF~ 681 (1200)
+|.+|+++|+|++|||+|+++|||+|++....+ .+.++.|.|||||||++|||+++|++||||
T Consensus 771 TL~G~RAeRnEylLLH~F~~~~fIvPDK~~ssk~~~d~d~~~eg~d~~~~~KKk~kYaGGLVlePkkGlYe~~VLllDFN 850 (1429)
T KOG0970|consen 771 TLQGGRAERNEYLLLHEFYKNGFIVPDKQNSSKAQKDADETEEGADEPSKGKKKAKYAGGLVLEPKKGLYEKYVLLLDFN 850 (1429)
T ss_pred HhhccchhhhhHHHHHHHHHCCccCCCccchhhhhhhhhhhhccccccccccccccccCceeeccccchhhheeEEEEcc
Confidence 999999999999999999999999998652111 112477889999999999999999999999
Q ss_pred cccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHH
Q psy5921 682 SLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDT 761 (1200)
Q Consensus 682 SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~ 761 (1200)
||||||||+|||||||+...... .|++.-.| .+...+||||++|+.|+++
T Consensus 851 SLYPSIIQEyNICFTTv~~~~~d------------------------~Dqlp~lP------~s~~~~GiLPr~l~~LVer 900 (1429)
T KOG0970|consen 851 SLYPSIIQEYNICFTTVDRFSVD------------------------SDQLPRLP------SSSSEQGILPRLLENLVER 900 (1429)
T ss_pred ccchHHHHHhhheeeeccccccC------------------------cccCCCCC------CccccCCccHHHHHHHHHH
Confidence 99999999999999998642100 01222222 1235899999999999999
Q ss_pred HHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcce
Q psy5921 762 RLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCR 841 (1200)
Q Consensus 762 R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~ 841 (1200)
|++||++||+. .+|+++.+||+||+||||+||||||++|+.. .|||+.++|+.||.+||+||++|+++++. +|+.
T Consensus 901 Rk~VK~lMK~~-~tp~~~~q~DIRQqALKLTANSMYGCLGf~~-SRFyAkpLAaLVT~KGReiLm~Tk~Lve~---mnl~ 975 (1429)
T KOG0970|consen 901 RKEVKKLMKQE-LTPEKRKQLDIRQQALKLTANSMYGCLGFVN-SRFYAKPLAALVTYKGREILMNTKDLVEK---MNLE 975 (1429)
T ss_pred HHHHHHHHhcC-CCHHHHHhhhHHHHHHhhhhccchhhccccc-chhhhhhHHHHHhhhhHHHHHHHHHHHHh---cCeE
Confidence 99999999987 6899999999999999999999999999984 59999999999999999999999999997 9999
Q ss_pred EEeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeee
Q psy5921 842 VVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIE 921 (1200)
Q Consensus 842 VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie 921 (1200)
|||||||||||+++..++++|++||++|+++||+.| +.++|++|+||+++||++||||||+..++.++....+++||++
T Consensus 976 VIYGDTDSvMInTn~td~~~a~kig~~~k~~VNkrY-k~LEIDiDgVfkrlLLlkKKKYAAL~l~~dgkg~~~~E~KGLD 1054 (1429)
T KOG0970|consen 976 VIYGDTDSVMINTNSTDYEEALKIGNEFKQAVNKRY-KLLEIDIDGVFKRLLLLKKKKYAALTLNKDGKGVERIEVKGLD 1054 (1429)
T ss_pred EEEcCCceEEeeCCCccHHHHHHHHHHHHHHHHHHh-hhheeehhHHHHHHHHHhhhhheeEEecCCCCCceeeeecccc
Confidence 999999999999999999999999999999999998 7899999999999999999999999998655545689999999
Q ss_pred eecCCchHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHH
Q psy5921 922 TVRRDGCPAVSKILKKSLCLLFETKD----LSVVKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLA 996 (1200)
Q Consensus 922 ~vRRD~~~l~k~i~~~vL~~Ll~~~d----~~~v~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA 996 (1200)
+||||||++++++...||+.||.+++ ++.|+++|+++..+|.+|.||+++|+|+|+| |+|++|++++++|||+||
T Consensus 1055 mvRRDwc~Lake~g~~vLd~ILs~~~~ee~veaI~d~L~kI~~k~~~G~vpl~~fvI~k~LtK~Pe~Yp~~kslPhVqVA 1134 (1429)
T KOG0970|consen 1055 MVRRDWCQLAKEIGKAVLDKILSDKSREEIVEAIHDELRKISEKLENGNVPLEKFVITKTLTKNPEAYPDGKSLPHVQVA 1134 (1429)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCccchhheeeehhccCChhhCCCcccCcHHHHH
Confidence 99999999999999999999999877 5678899999999999999999999999999 789999999999999999
Q ss_pred HHHHHhCCCCCCCCCCeeeEEEEeCCC-CCCcccccCChhhhhccCC-CCCChHHHhhccchhHHHHHHhhc-CCCh---
Q psy5921 997 RQWVLTDPRAEPRVSERVPYVIVSGAP-GLPLIKLVKSPYELLQDSS-LRLNSEYYITRVIIPPLERCFLLL-GTPV--- 1070 (1200)
Q Consensus 997 ~r~~~~d~~~~p~~GerI~YVI~~g~~-~~~~~~r~~~P~e~~~~~~-l~iD~~YYi~kqi~ppl~Rll~~~-G~d~--- 1070 (1200)
+||.+++ +..++.||.|+|||+++.+ +.+..+||++|.|+..+++ +.||+.|||.+||+||++|+++++ |.|.
T Consensus 1135 Lrm~~~G-~~~~k~gDvV~yVI~~~D~~~~~As~RAyh~~e~~~~~~~l~iD~~YYLa~QIhPvV~Rlve~Iegt~a~ri 1213 (1429)
T KOG0970|consen 1135 LRMNKRG-KRKVKAGDVVPYVICKEDGIDNPASERAYHPDEVMPDEDNLAIDYNYYLAQQIHPVVERLVEPIEGTDAVRI 1213 (1429)
T ss_pred HHHHHhc-CcccccCCeEEEEEecCCCCCCchhhcccChHhhCccCcceeechhhHhhhhcchhHHHHhhhhcccCHHHH
Confidence 9999986 5778999999999996544 4456689999999986555 999999999999999999999998 7663
Q ss_pred hhhhhcCCcceeecC---ccccccccccccccc---cc----cccccccCCccccc--------------CCCC-Ccccc
Q psy5921 1071 LPWYKNLPRKLHVYL---PSVLNERKKKSTISQ---YF----ASVNCVCCNQMTQN--------------NKGV-CDACL 1125 (1200)
Q Consensus 1071 ~~w~~~~~~~~~~~~---~~~~~~~~~~~~i~~---~~----~~~~C~~C~~~~~~--------------~~~~-C~~C~ 1125 (1200)
.+|++-.|++++.+. .+.....+-.+++.+ |+ ..+.|+.|+++... ...+ |..|.
T Consensus 1214 ae~LGlDstkyr~~~~~q~~~~a~s~~~s~~td~~~~~~ce~~~l~CptC~~~~~~~~~~~~~s~~~~~~~l~~~Ca~Cq 1293 (1429)
T KOG0970|consen 1214 AECLGLDSTKYRRHEGNQKENSALSPDESTLTDVERFKDCEPLTLRCPTCSTENSRAFAVDKVSEMSRKEVLSLYCARCQ 1293 (1429)
T ss_pred HHHhCCCchhhhhhhcchhhhhhhCCCcchhcchhhhccccceEEECCCCCCcccccccccCcccchhhhHhhhcChhhh
Confidence 678887776655532 111122223333322 31 35899999987521 1235 99999
Q ss_pred cchhhhHHHHHHHH----HHHHHHHHHHHHHcc--cCcCCCCCc-----cccCC---CCC---ceeEeecchhhhhhHHH
Q psy5921 1126 NQTQLLGTCLYYKI----QAWQRSQDQVNKVCT--TCVGRSTSN-----DCISL---DCP---VLYRKTQITRDLDQLSY 1188 (1200)
Q Consensus 1126 ~~~~~~~~~~~~~~----~~~e~~~~~~~~~C~--~C~~~~~~~-----~C~~~---dC~---v~y~~~~~~~~~~~~~~ 1188 (1200)
..+..+.+.+.+++ +.....++..|++|+ +|..+||+. +| ++ .|. +.++++.++ +|+||.|
T Consensus 1294 ~~~~~~~~~i~nq~~~qir~fV~~yy~g~lvCdd~tC~~~TR~~sv~~~R~-g~~C~~C~~g~l~r~Ytd~~-LY~Ql~y 1371 (1429)
T KOG0970|consen 1294 QEPIESPASITNQVERQIRCFVSLYYLGWLVCDDPTCGFRTRQQSVFGKRE-GPLCPGCRIGVLRREYTDKQ-LYNQLCY 1371 (1429)
T ss_pred cCCccchHHHHHHHHHHHHHHHHHHhhhheeecCcccccccccceeecccc-CccCccccccchhhhhhHHH-HHHHHHH
Confidence 98866566665555 566677788899997 999988765 43 23 454 578888765 9999999
Q ss_pred HHHHHHhh
Q psy5921 1189 VLSLCDSH 1196 (1200)
Q Consensus 1189 ~~~l~~~~ 1196 (1200)
|+.+||..
T Consensus 1372 ~r~i~d~e 1379 (1429)
T KOG0970|consen 1372 FRYILDCE 1379 (1429)
T ss_pred HHHHHhhH
Confidence 99999943
No 4
>KOG0969|consensus
Probab=100.00 E-value=1.2e-150 Score=1305.47 Aligned_cols=803 Identities=27% Similarity=0.455 Sum_probs=712.1
Q ss_pred CCCcccccccc---cccCCcCCcceEeecccCccccc--c---cccCCcceEEEEEEEeccCCCCCCCCCCCcEEEEEEE
Q psy5921 343 TPKRRICDSYA---IDAMTPDTTGDYQMGLDNLNEVT--S---HVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYY 414 (1200)
Q Consensus 343 ~g~cwl~i~~~---i~~~~~~s~~~fev~~~~~~~~~--~---~~~~p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~ 414 (1200)
-|+.|+.+.-+ +.. ...+.|+.|+++.--..+. + -...+|+++|||||||.++.+.||.|+.|||+.|+..
T Consensus 226 VG~~wi~lp~gk~~~~~-~~~s~cqlEv~v~y~~lishp~eG~w~~~APlrvlSfDIECagrkg~FPe~~~DPvIQIan~ 304 (1066)
T KOG0969|consen 226 VGMNWIELPAGKYRIRD-NRVSRCQLEVSVNYKDLISHPAEGEWSKIAPLRVLSFDIECAGRKGVFPEAKIDPVIQIANL 304 (1066)
T ss_pred ccceeEEeccchheecc-chhcccceEEEEeecccccccccCcccccccccccceeEEeccCCCCCCccccChHHHHHHH
Confidence 48899999887 444 6789999998755323332 2 2337899999999999999999999999999999977
Q ss_pred ecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCC
Q psy5921 415 LYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGL 494 (1200)
Q Consensus 415 v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi 494 (1200)
+.-.+...+..+.++++++|..+ .+..|..+.+|++||..|-.+|++.|||||+|||+.+||+|||++||+.||+
T Consensus 305 v~~~Ge~~pf~rnvf~l~~capI-----~G~~V~~~~~e~elL~~W~~firevDPDvI~GYNi~nFDiPYll~RA~~L~I 379 (1066)
T KOG0969|consen 305 VTLQGENEPFVRNVFTLKTCAPI-----VGSNVHSYETEKELLESWRKFIREVDPDVIIGYNICNFDIPYLLNRAKTLGI 379 (1066)
T ss_pred HHHhcCCchHHHhhhcccCcCCC-----CCceeEEeccHHHHHHHHHHHHHhcCCCeEecccccccccceecChHhhcCc
Confidence 65555555667778889888754 4688999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccccc----cccCc---cccccceeeecceEEeehHHHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHH
Q psy5921 495 NLNQELSRITEVEK----RNSSR---DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLT 567 (1200)
Q Consensus 495 ~l~~~lgR~~~~~~----~~~s~---~~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~ 567 (1200)
..++.|||++.... ..+++ |.+....+.|.||+.+|+...+.++++|+||+|+.|+.|+|+++|+++++..|+
T Consensus 380 e~Fp~LGRikn~~s~irDttfSSkq~GtRetK~v~I~GRlqfDllqvi~Rd~KLrSytLNaVs~hFL~EQKEDV~~siIt 459 (1066)
T KOG0969|consen 380 ENFPYLGRIKNSRSVIRDSTFSSKQYGTRETKEVNIDGRLQFDLLQVILRDYKLRSYTLNAVSAHFLGEQKEDVHHSIIT 459 (1066)
T ss_pred ccccccceecccceeeeccccchhhcCcccceEEeecceeeehHHHHHHHhhhhhhcchhhhHHHhhhhhcccccccchh
Confidence 99999999975321 12222 556688899999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhccccccccccCCC
Q psy5921 568 CWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPS 647 (1200)
Q Consensus 568 ~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps 647 (1200)
++.+.+. +.|.+++.||++|+++.++|+++|..|.++.||||++|+|++.+|+||+|++|-|+|||.|+++++++|+-.
T Consensus 460 dLQng~~-~TRRRlA~YCLkDAYLPlRLlekLM~ivNy~EMARVTGVP~syLltRGqqIKVlSqLlRkakq~~~~~P~i~ 538 (1066)
T KOG0969|consen 460 DLQNGNE-QTRRRLAVYCLKDAYLPLRLLEKLMVIVNYTEMARVTGVPISYLLTRGQQIKVLSQLLRKAKQKDFVIPNIK 538 (1066)
T ss_pred hhhcCcH-HHHHHHHHHHhhhhcchHHHHHHHHHHHhHHhhhhhhCCcHHHHHhCCcchHHHHHHHHHHhhcCeeeeeec
Confidence 9987654 789999999999999999999999999999999999999999999999999999999999999999987532
Q ss_pred hhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhh
Q psy5921 648 IKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKK 727 (1200)
Q Consensus 648 ~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 727 (1200)
. .......+.|+.|+||.+|||+.||++|||+|||||||||||+||||++... ..++
T Consensus 539 ~--~~s~~e~yEGatVIEp~kGfY~~PIATLDFaSLYPSIMmahNLCYtTLl~~~---------------------t~~~ 595 (1066)
T KOG0969|consen 539 S--QGSDDEQYEGATVIEPRKGFYDKPIATLDFASLYPSIMMAHNLCYTTLLTKE---------------------TVEK 595 (1066)
T ss_pred c--cCCccccccccEEeecccccCCCCceeeehhhhhhHHHHHhhhhheeccccc---------------------hhhh
Confidence 1 1112245679999999999999999999999999999999999999997531 1222
Q ss_pred c-cCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCC
Q psy5921 728 L-QQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSG 806 (1200)
Q Consensus 728 l-~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsg 806 (1200)
+ .++++.+|+|-.||+.++|+|+||.+|++||..|+.+|+.||+.+ ||.++++||.||+|||+.|||.||+|||+ -|
T Consensus 596 l~~~~~~~TP~g~yFv~~~~rkGlLP~ILe~ll~aRKraK~dlk~ek-Dp~kr~vldGRQLAlKisANSvYGFTGAt-vG 673 (1066)
T KOG0969|consen 596 LGDEDYTRTPTGDYFVKTEVRKGLLPEILEDLLTARKRAKADLKKEK-DPFKRAVLDGRQLALKISANSVYGFTGAT-VG 673 (1066)
T ss_pred cCccceeECCCCCeeeehhhhccccHHHHHHHHHHHHHHHHHHHhcc-CHHHHhhhcchhhheeecccccccccccc-cC
Confidence 2 367899999999999999999999999999999999999999876 89999999999999999999999999998 68
Q ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHhccc------CcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCc
Q psy5921 807 RMPCVEVGDSVVSKGRETLQKAIETVNNT------SKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTP 880 (1200)
Q Consensus 807 R~~~~eiA~sIT~~GReiL~~a~~~ie~~------~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~p 880 (1200)
++||.+|..+||++||++|+.|+++||++ +..++.|||||||||||.++..+.++|+++|+|++++|+..|++|
T Consensus 674 kLPCleIS~SVT~yGR~MI~~TK~~Ve~~y~~~ngy~~da~ViYGDTDSVMv~Fgv~~v~~am~lg~eaa~~vs~~F~~P 753 (1066)
T KOG0969|consen 674 KLPCLEISQSVTAYGRQMIEKTKKLVEEKYTIKNGYSHDAVVIYGDTDSVMVKFGVSDVEEAMKLGREAAEYVSSKFVKP 753 (1066)
T ss_pred ccceeeechhhHHHHHHHHHHHHHHHHHHhhhccCCccccEEEecCCceEEEecCchhHHHHHHHhHHHHHHHHhcCCCC
Confidence 99999999999999999999999999986 467899999999999999999999999999999999999999999
Q ss_pred eeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q psy5921 881 VKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFS 960 (1200)
Q Consensus 881 i~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~ 960 (1200)
|+|||||||.|.+|..||||||+.|..++. ..++|.||+|+||||.|||+++++..+|+.||.++|++.+.+|+++.+.
T Consensus 754 IkLEFEKvY~PYLLInKKRYAGL~~t~pd~-~DkmD~kGietVRRDnc~LV~~v~~~~L~kiLi~rdv~gA~~fvk~~Is 832 (1066)
T KOG0969|consen 754 IKLEFEKVYFPYLLINKKRYAGLLWTNPDV-FDKMDCKGIETVRRDNCPLVANVVNTVLRKILIERDVEGALAFVKDTIS 832 (1066)
T ss_pred ceeEeeeeecceEEeccceeeeeEeccCCc-CccccccccchhccCCchHHHHHHHHHHHHHHhhcChHHHHHHHHHHHH
Confidence 999999999999999999999999986654 3689999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhc
Q psy5921 961 KIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQ 1039 (1200)
Q Consensus 961 kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~ 1039 (1200)
+|+-|+++++.++|+|++ |....|..+ ++|+++|.||+++|++..|..||||||||+.+..+.++++|+.+|..+++
T Consensus 833 DlL~nriDiS~LVItK~Ltkagd~Y~~k--qaHveLAermrkRD~gtaP~lGDRVpYVIi~~akg~~ay~rsEDP~fVLe 910 (1066)
T KOG0969|consen 833 DLLCNRIDISLLVITKELTKAGDDYAAK--QAHVELAERMRKRDAGTAPNLGDRVPYVIIAAAKGAPAYERSEDPLYVLE 910 (1066)
T ss_pred HHHhcccceeeeeeeehhcccccchhhh--hhhHHHHHHhhhcCCCCCCccCCcCcEEEEecccCCchhcCCCCCeEEec
Confidence 999999999999999999 445678765 68999999999999999999999999999999999999999999999887
Q ss_pred cCCCCCChHHHhhccchhHHHHHHhhcCCChh-hhhh-cCCcceeecCcccccccccccccccccc-ccccccCCccccc
Q psy5921 1040 DSSLRLNSEYYITRVIIPPLERCFLLLGTPVL-PWYK-NLPRKLHVYLPSVLNERKKKSTISQYFA-SVNCVCCNQMTQN 1116 (1200)
Q Consensus 1040 ~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~-~w~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~~~C~~C~~~~~~ 1116 (1200)
+ +++||..|||++||..||.|||+|+--|.+ ..++ ++.|... -..++.++|..|.+ +.+|.+|+..+..
T Consensus 911 n-NipiD~~yYL~nQlsKPllrIfePILg~~~~~l~~g~htR~~~-------v~~~~~gGl~~F~kk~~tC~gCk~~~~~ 982 (1066)
T KOG0969|consen 911 N-NIPIDTRYYLENQLSKPLLRIFEPILGDAEKELLRGDHTRTIT-------VTTSKVGGLMAFAKKVETCLGCKAPLRK 982 (1066)
T ss_pred C-CCCcchHHHHhhhhhhhHHHHhhhhhCchhhccccccceeEEE-------eecccccchhhhhhhccccccccccccc
Confidence 6 799999999999999999999999844543 2222 2222211 12346778888865 7899999997643
Q ss_pred -CCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHcccCcC-CCCCccccCCCCCceeEeecchhhhhhHHH
Q psy5921 1117 -NKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG-RSTSNDCISLDCPVLYRKTQITRDLDQLSY 1188 (1200)
Q Consensus 1117 -~~~~C~~C~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~~-~~~~~~C~~~dC~v~y~~~~~~~~~~~~~~ 1188 (1200)
..++|.+|..+....+..-...++.+|.++..+|..|++|++ -+.++.|.|.|||+||.|.+.+++++++..
T Consensus 983 ~~~~~C~~C~~r~~~lyqk~v~~~~~lee~fsrlWt~Cqrcqgs~h~~vic~~rdCpifymr~kv~keL~~~~~ 1056 (1066)
T KOG0969|consen 983 GEQALCENCLPRSSELYQKQVSHVNDLEEKFSRLWTECQRCQGSLHEEVICSNRDCPIFYMRQKVRKELQEQVD 1056 (1066)
T ss_pred ccchhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhheeccCCCCchhhHHHHHHHHHHHHH
Confidence 346899999999999999999999999999999999999996 478999999999999999999988877543
No 5
>TIGR00592 pol2 DNA polymerase (pol2). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-119 Score=1168.26 Aligned_cols=694 Identities=23% Similarity=0.322 Sum_probs=596.7
Q ss_pred CCCCCCcC-CCChhhHHHHHHHhhc-CCCcccccccc-cccCCcCCcceEeecccCcccccc--cccCCcceEEEEEEEe
Q psy5921 319 DCSKSSQI-DFNPDLFKSFIRKQLE-TPKRRICDSYA-IDAMTPDTTGDYQMGLDNLNEVTS--HVENYYLTVLAVEIHA 393 (1200)
Q Consensus 319 ~~~~~~~~-~~n~~l~e~f~~~~~~-~g~cwl~i~~~-i~~~~~~s~~~fev~~~~~~~~~~--~~~~p~LtvlSlDIeT 393 (1200)
..++++++ ++|++.++.|++ +++ |||||+.+..+ .......++|++++.+..+..+.. ...+||+++|+|+|+
T Consensus 437 ~g~~~~~vf~~n~g~~erfll-~rki~gp~WL~i~~p~~~~~~~~S~c~yEga~v~~p~v~~g~~~~~pPl~vLdFsi~- 514 (1172)
T TIGR00592 437 KGQTFWHVFGSNTGNLERFLL-LRKIKGPCWLAVKGPDELEYPRRSWCKYEGGYVKPPNVEKGLDKTPPPLVVLDFSMK- 514 (1172)
T ss_pred cCCcchheeccCHHHHHHHHh-cCCCCCCceEEeCCCcccCcCCccccceEEEEecCccccccccCCCCCeEEEEeeeE-
Confidence 46789999 999999999999 888 99999999988 443334789999988775553332 234789999999999
Q ss_pred ccCCCCCCCCCCCcEEEEEEEecCCCCC------CCceEEE-EEecCCCCC-CcCC------CCCeEEEEcCCHHHHHHH
Q psy5921 394 ISRALLKPDPAYDEVKAIFYYLYTCPPE------EDRKVGI-ILIGQESEL-PEVR------TKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 394 ~t~~~l~Pdp~~DeIiaIs~~v~~d~~~------d~~~~gv-~~v~~~~~~-p~~~------~~~~~V~~~~nEkeLL~~ 459 (1200)
. ++|+...++|+||+..++.+... +...... ...++.+.. |.++ ..+..+..+.+|++||.+
T Consensus 515 S----lyPsi~~~~nl~iS~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~L~~~~sEr~lL~~ 590 (1172)
T TIGR00592 515 S----LNPSIIRNEIVSIPDTLHREFALDKPPPEPPYDVHPCVGTRPKDCSFPLDLKGEFPGKKPSLVEDLATERALIKK 590 (1172)
T ss_pred E----ecCccccCceEEEEEEEeecccccCCCCCCccceEEEEEEccCCCCCCchhhhhhhccCCcEEEEecCHHHHHHH
Confidence 2 68999999999999998776421 1111222 223332222 4443 124568999999999999
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el 539 (1200)
|++.++++|||+++|||+.+|||+||.+||..++++.|+++||++.... ++ .++ ...+.||++||+|..+++.+
T Consensus 591 fl~~~~~~DPDii~g~n~~qfdlkvl~nR~~~l~i~~~~~~Gr~~~~~~--~~--~~~--~~~~~Grl~~D~~~~~k~~~ 664 (1172)
T TIGR00592 591 FMAKVKKIDPDEIVGHDYQQRALKVLANRINDLKIPTWSKIGRLRRSPK--FG--RRF--GERTCGRMICDVEISAKELI 664 (1172)
T ss_pred HHHHHHhcCCCEEEEEcccCccHHHHHHHHHHcCCCcccccCccccCCC--cc--ccc--cceECCEEEEEHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999875421 21 122 23499999999999999999
Q ss_pred cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhh
Q psy5921 540 NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEV 619 (1200)
Q Consensus 540 ~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~v 619 (1200)
++++|+|++||.++||+.+.++++.+|.++|.++ ..+..+++||++|+.++++|+.++++|+++.++|+++|++|.++
T Consensus 665 ~~~sy~L~~v~~~~L~~~k~~~~~~~i~~~~~~~--~~~~~~~~y~~~Da~l~~~L~~~l~~l~l~~~lt~i~G~~~~~~ 742 (1172)
T TIGR00592 665 RCKSYDLSELVQQILKTERKVIPIDNINNMYSES--SSLTYLLEHTWKDAMFILQIMCELNVLPLALQITNIAGNIMSRT 742 (1172)
T ss_pred CcCCCCHHHHHHHHhCCCCcccCHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCcHHhc
Confidence 9999999999999999999999999999999865 45899999999999999999999999999999999999999999
Q ss_pred ccCcchhhhhhhhhhccccccccccCCChhhhc---------------ccCCCCCCCeeeccCCCcccCCeEEeeccccc
Q psy5921 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRA---------------HMRAPESLPLILEPESRLYTDPIIVLDFQSLY 684 (1200)
Q Consensus 620 l~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~~---------------~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLY 684 (1200)
+.+|+++|+|++|||+|+++|||+|++....+. ..++.+.||+|++|++|||++||++|||+|||
T Consensus 743 l~~~~~~r~e~lll~~~~~~~~i~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~Gg~V~eP~~G~y~~~V~~lDF~SLY 822 (1172)
T TIGR00592 743 LMGGRSERNEFLLLHAFYENNYIVPDKQIFRKQQKLGDEDEEIDGYKKGKKAAYAGGLVLEPKVGLYDKYVLLMDFNSLY 822 (1172)
T ss_pred cCCchHHHHHHHHHHHHHhCCEEccCccccccccccccccccccccccccccCcCCCeEecCCCCcccCCEEEEEcCCcc
Confidence 999999999999999999999999986432110 12357889999999999999999999999999
Q ss_pred HHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHH
Q psy5921 685 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLM 764 (1200)
Q Consensus 685 PSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~ 764 (1200)
||||++|||||||+++..+. +++. .+...+.++||||++|++|+++|++
T Consensus 823 PSIi~~~Nic~~t~~~~~~~-------------------------~~~~------~~~~~~~~~Gilp~il~~L~~~R~~ 871 (1172)
T TIGR00592 823 PSIIQEFNICFTTVQQKVDE-------------------------DELP------ELPDSELEMGILPRELRKLVERRKE 871 (1172)
T ss_pred HHHHHHhCcCccccCCCCcc-------------------------hhcc------cCCcccccCcchHHHHHHHHHHHHH
Confidence 99999999999999753210 1111 1122356899999999999999999
Q ss_pred HHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEe
Q psy5921 765 VKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVY 844 (1200)
Q Consensus 765 vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIY 844 (1200)
+|++||+ ..|+.++++||+||+|||++|||+|||+|+. .|||||.++|++||++||++|++|++++++ +|++|||
T Consensus 872 ~K~~mk~-~~~~~~~~~~d~~Q~AlKi~aNS~YG~lG~~-~~r~~~~~~A~~iT~~GR~~l~~~~~~~e~---~g~~VIY 946 (1172)
T TIGR00592 872 VKKLMKQ-DLNPDLRLQYDIRQKALKLTANSMYGCLGYS-KSRFYAKPLAALVTAKGREILEHTRQLVEE---MNLEVIY 946 (1172)
T ss_pred HHHHhhc-CCCHHHHHHHHHHHHHHHHhhhccccccccc-cccccChHHHHHHHHHHHHHHHHHHHHHHH---cCCEEEE
Confidence 9999998 6689999999999999999999999999998 479999999999999999999999999997 8999999
Q ss_pred ccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCC--CCCCcEEEEeeee
Q psy5921 845 GDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETAD--QDKPIYEAKGIET 922 (1200)
Q Consensus 845 GDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~--~~~~~~~~KGie~ 922 (1200)
||||||||++++.+.++++++|++|++.||+.|+ +++||||++|.+++|++||||||+.++... +..+++++||+|+
T Consensus 947 GDTDSv~v~~~~~~~~e~~~~~~~~~~~in~~~~-~l~le~e~vy~~~ll~~KKrYa~l~~~~~~~g~~~~k~~~KGle~ 1025 (1172)
T TIGR00592 947 GDTDSIMINTPGTKYEEVFKIGKEFKSEVNKLYK-LLELDIDGVFKRLLLLKKKKYAAIKVEGDSDGNYTTKQEVKGLDI 1025 (1172)
T ss_pred ecCCeEEEEcCCCCHHHHHHHHHHHHHHHhhcCC-ceEEeehhhhHhhHhhhccceEEEeeccCcCCCcceeEEeecceE
Confidence 9999999999999999999999999999999996 899999999999999999999999986432 2235899999999
Q ss_pred ecCCchHHHHHHHHHHHHHHhccCCHHHH----HHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHH
Q psy5921 923 VRRDGCPAVSKILKKSLCLLFETKDLSVV----KEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLAR 997 (1200)
Q Consensus 923 vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v----~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~ 997 (1200)
||||||+|+|+++.++|+.||.+++++.+ ++++++..++|++|++|+++|+|+|+| |++++|++++++|||++|+
T Consensus 1026 vRrD~~~l~k~~~~~vl~~il~~~~~~~~~~~i~~~l~~~~~~l~~g~~~~~~lvi~k~l~k~~~~Y~~~~~~phv~~A~ 1105 (1172)
T TIGR00592 1026 VRRDWSPLAKETGKKVLDTILSDKDVEEAVEEVQEVLEKIGKNVLNGEVPLEKFVINKQLTRDPKDYPDGASLPHVHVAL 1105 (1172)
T ss_pred EECCcHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCCCCHHHeeehhhccCCHHHcCCCCCChHHHHHH
Confidence 99999999999999999999999987665 455666667777799999999999999 5688999877899999999
Q ss_pred HHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhc-cCCCCCChHHHhhccchhHHHHHHh
Q psy5921 998 QWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQ-DSSLRLNSEYYITRVIIPPLERCFL 1064 (1200)
Q Consensus 998 r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~-~~~l~iD~~YYi~kqi~ppl~Rll~ 1064 (1200)
||++++ +..++.|+||+|||++++++....+|+++|+++.. ++++.||++|||++||+||+.|||+
T Consensus 1106 ~~~~~~-g~~~~~G~~I~Yvi~~~~~~~~~~~ra~~~~~~~~~~~~l~iD~~yYi~~qi~p~~~Ri~e 1172 (1172)
T TIGR00592 1106 RINARG-GRKVKAGDVVSYVICKDGGNLSARQRAYALEELQRKHNNLIYDTQYYLEHQIHPVVLRILE 1172 (1172)
T ss_pred HHHHhc-CCCCCCCCEEEEEEEeCCCCcchhhhccChHHhhccCCCCCcCHHHHHHhhcHHHHHHhhC
Confidence 998874 56789999999999998877777789999988864 4469999999999999999999985
No 6
>PHA03036 DNA polymerase; Provisional
Probab=100.00 E-value=1.4e-108 Score=1017.24 Aligned_cols=658 Identities=18% Similarity=0.222 Sum_probs=533.0
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCC---CcC---C----------CCCe
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESEL---PEV---R----------TKPI 445 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~---p~~---~----------~~~~ 445 (1200)
-|++.|||||||.. .+.||+|..|||+.|++++.+.... ...+++++.+... +.. + -...
T Consensus 158 ~~~~~lsfDIEC~~-~g~FPs~~~~pvshIs~~~~~~~~~---~~~~~l~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (1004)
T PHA03036 158 IPRSYLFLDIECHF-DKKFPSVFINPVSHISCCYIDLSGK---EKRFTLINEDMLSEDEIEEAVKRGYYEIESLLDMDYS 233 (1004)
T ss_pred CcceeEEEEEEecc-CCCCCCcccCcceEEEEEEEecCCC---eeEEEEeccccccccccccceeeeeeccccccccCCc
Confidence 37899999999995 6689999999999999866543221 2335555543221 111 0 1246
Q ss_pred EEEEcCCHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCC--ccccccccccc----ccccCc----c-
Q psy5921 446 QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL--NQELSRITEVE----KRNSSR----D- 514 (1200)
Q Consensus 446 ~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l--~~~lgR~~~~~----~~~~s~----~- 514 (1200)
.+..+.+|++|| .|++.+.+.|||+|+|||+++||||||.+|++.|+... +...++..... .+..+. |
T Consensus 234 ~~~~~~sE~~ml-~~~~~i~~~d~D~i~~yNg~nFD~~Yi~~R~~~L~~~~~~~~~~~~~~~~~~~v~~r~~~s~~~~gg 312 (1004)
T PHA03036 234 KELILCSEIVLL-RIAKKLLELEFDYVVTFNGHNFDLRYISNRLELLTGEKIIFRSPDGKETVHLCIYERNLSSHKGVGG 312 (1004)
T ss_pred eeeecCCHHHHH-HHHHHHHhcCCCEEEeccCCCcchHHHHHHHHHhccCceeeccCCCcccccceeeccccccccccCc
Confidence 788899999988 66999999999999999999999999999999985421 12233332111 111111 1
Q ss_pred -ccccceee-ecceEEeehHHHHHhhhcCCCCCHHHHHHHHc-----------------C--------------------
Q psy5921 515 -EVKNTQLQ-MPGRIVINLWRLLRHEVNLQSYTFENIMYHVL-----------------H-------------------- 555 (1200)
Q Consensus 515 -~~~~~~~~-i~GRlvlDl~r~~r~el~L~SYsLe~Va~~vL-----------------g-------------------- 555 (1200)
.+....+. ..||+++|+|..+|+.++|.||+|++|+++++ |
T Consensus 313 ~~~~t~~i~~~~G~i~fDLy~~i~k~~~L~sYkL~~Vsk~~f~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~f~~vl~t~ 392 (1004)
T PHA03036 313 VANTTYHINNNNGTIFFDLYTFIQKTEKLDSYKLDSISKNAFNCNAKVLSENNNEVTFIGDNTTDAKGKASIFSEVLSTG 392 (1004)
T ss_pred cccceEEecccCCeEEEEhHHHHhhhcCcccccHHHHHHHhhccceeeeecCCceeEEccCcccccccchhhhhhhhccc
Confidence 11233444 79999999999999999999999999999966 4
Q ss_pred ------C------------------------------------CcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHH
Q psy5921 556 ------E------------------------------------RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII 593 (1200)
Q Consensus 556 ------~------------------------------------rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l 593 (1200)
+ +|++++..++.+.|+. ..+.+++.||++|+.+++
T Consensus 393 ny~~i~~~~~~k~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~KdDV~~~~i~~~~~~---~~r~rla~YClkDa~L~l 469 (1004)
T PHA03036 393 NYVTINDDDICKILDKDIIENSFTVKVICKNNYIPGDTYTLSFGKDDVDLSDMYKNYNL---EIALEMARYCIHDACLCK 469 (1004)
T ss_pred ceeeecccchhhhcccccccccceeeeecccccccccceeecccccCCCHHHHHHHhCh---hHHHHHHHHHHHHHHHHH
Confidence 4 6788889999988874 458999999999999999
Q ss_pred HHhhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcccC
Q psy5921 594 RLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTD 673 (1200)
Q Consensus 594 ~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~ 673 (1200)
+|+.++.++.+..++|+.+++|..+++..|++.+++++|+|.+.++|+++|.... .....|.||+||||++|||++
T Consensus 470 ~L~~~l~~~~~v~~~a~~~~lp~~~~i~~~~s~~i~~qllr~~~~~~~i~p~~~~----~~~~~YeGa~VlEP~~G~Y~~ 545 (1004)
T PHA03036 470 YLWEYYGIETKIDAGASTYLLPQSMVFEYRASTLIKGPLLKLLLEEKTILVRSET----KNKFPYEGGKVFAPKQKMFDN 545 (1004)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhheEeeeeccccccHHHHHHHHCCcccccCCC----CccCCcCceEEecCCCCcccC
Confidence 9999999999999999999999999999999999999999999999998863211 123368899999999999998
Q ss_pred CeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCccccc--ccChHHHhhccCcEeeCCCc---e--EEecCCC
Q psy5921 674 PIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDL--NVSIRSLKKLQQKLTISPSG---V--AFVDKSI 746 (1200)
Q Consensus 674 pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~--~~~~~~~~~l~d~i~~sPnG---~--~Fvk~~~ 746 (1200)
||+||||+||||||||+|||||||+++.....+..+ -+.....+ ..++... ..+...|++ + .|+.+++
T Consensus 546 pV~vLDFaSLYPSIIia~NLcyeTlv~~~~~~~~~~-~~i~~~~i~~~~p~~dy----~~v~~~~~~~~~v~~~~vf~~~ 620 (1004)
T PHA03036 546 NVLIFDYNSLYPNVCIFGNLSPETLVGVVVNDNRLE-AEINKQELRRKYPYPRY----IYVHCEPRSPDLVSEIAVFDRR 620 (1004)
T ss_pred CEEEEEccccchHHHHHhCCCcCeEeeccccccccc-cccccccccccCCCccc----eeeeccCCcccccccceeecCC
Confidence 999999999999999999999999987432111000 00000000 0010000 112234432 2 4556677
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHH
Q psy5921 747 RCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQ 826 (1200)
Q Consensus 747 r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~ 826 (1200)
++||||++|++|++.|+++|+.||+++ ++.++++||+||+|+|++|||+|||+|+. .|||||.++|++||+.||++|+
T Consensus 621 rkGILP~iL~~Ll~~Rk~~Kk~mK~~~-d~~e~~~lD~rQlAlKI~aNS~YG~~G~~-~~rly~~~iA~sVTa~GR~mI~ 698 (1004)
T PHA03036 621 IEGIIPKLLKTFLEERARYKKLLKEAT-SSVEKAIYDSMQYTYKIVANSVYGLMGFR-NSALYSYASAKSCTAIGRNMIK 698 (1004)
T ss_pred CCcChHHHHHHHHHHHHHHHHHHhhCC-ChHHHHHHHHHHHHHHHHHhccccccccc-CccccCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999875 67788999999999999999999999998 5799999999999999999999
Q ss_pred HHHHHhccc-----------------------------------CcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHH
Q psy5921 827 KAIETVNNT-----------------------------------SKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAN 871 (1200)
Q Consensus 827 ~a~~~ie~~-----------------------------------~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~ 871 (1200)
.|+++|++. +++|++|||||||||||++++.+.++++++|+++++
T Consensus 699 ~tk~~Ve~~~~~~~~~~l~~~p~~~f~~~~r~~~~~~~~~l~~~~~~g~kVIYGDTDSVFV~~~~~d~eea~~ig~ela~ 778 (1004)
T PHA03036 699 YLNSVLNGSKLINGKLILANCPINPFFKDDRSIDTNYDTNLPVEYNFTFRSVYGDTDSVFLEINTKDVDKSIKIAKELER 778 (1004)
T ss_pred HHHHHhhcccccchhhhhhhccccccccccccccccccccccccccCCcEEEEEecCeeEEEcCCCCHHHHHHHHHHHHH
Confidence 999876531 237999999999999999999999999999999999
Q ss_pred HHHcc-CCCceeeeeeceechhhccccceeEEEEeecC--CCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHH---hcc
Q psy5921 872 VVTNN-NPTPVKLKFEKVYQPCILQTKKRYVGYMYETA--DQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLL---FET 945 (1200)
Q Consensus 872 ~Vn~~-~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~--~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~L---l~~ 945 (1200)
.||+. ++.|++|||||||.++||++||||||+.|++. ++..+++++||+|+||||||+|+|++++++++.| |.+
T Consensus 779 ~In~~lf~~pikLEfEKVY~~lLLl~KKRYAGl~~~~~~~~~~~~kid~KGie~VRRD~c~fvK~v~~~vi~~L~~iL~~ 858 (1004)
T PHA03036 779 IINEKVLFDNFKIEFEAVYKNLIMQSKKKYTTLKYIASSTDGSVPERVNKGTSETRRDVSKFHKYMIKIYKTRLLDMLSE 858 (1004)
T ss_pred HHHHHhcCCCeEEEehhhHHHHHhhhhhheeeEeeccccCCCCceEEEEECceeEeCchHHHHHHHHHHHHHHHHHHhcc
Confidence 99975 78999999999999999999999999999755 4456799999999999999999999999977755 777
Q ss_pred CC---HHHHHHHHHHHHHHHH----cCCCChhhhhHhhcccCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEE
Q psy5921 946 KD---LSVVKEYVEKQFSKII----SGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVI 1018 (1200)
Q Consensus 946 ~d---~~~v~~yl~~~~~kl~----~g~v~~~dlii~K~lr~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI 1018 (1200)
++ .+.+.+|+++.+.+|. +|++|+++|+|+|++. ..|++.. +||+++|+||++++++ .|+.||||+||+
T Consensus 859 ~d~~~~~~~i~~Lk~~i~dL~~n~~~~~vple~LviSk~l~--~~Yk~~~-~ph~~la~r~~~r~~~-~p~iGDRv~YV~ 934 (1004)
T PHA03036 859 GNMNSNQVCIDILRSLEKDLIIEFDSRSAPLEMFLLSRTHH--CNYKSPD-NPNMYLVNEYNKNNPE-KIEIGERYYFAY 934 (1004)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHhcCCCCHHHHhhhhccc--ccCCCCC-CCHHHHHHHHHhhCCC-CCCCCCEEEEEE
Confidence 75 5688899988777664 4599999999999985 3599865 7999999999999988 899999999999
Q ss_pred EeCCC--------CCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHh
Q psy5921 1019 VSGAP--------GLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL 1064 (1200)
Q Consensus 1019 ~~g~~--------~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~ 1064 (1200)
+++.. +.+.++++.+|..++++ +++||++||++ ||+.++..|++
T Consensus 935 i~~~~~~w~~~~~~~~~ye~aeDp~yvl~~-~~~I~~e~Y~~-~l~~~v~n~l~ 986 (1004)
T PHA03036 935 ICPINLPWQKKLVNIKTYERIIDRSFKLKS-NERIFYEVYFK-RLATEVVNLLD 986 (1004)
T ss_pred EECCCccccccccCcccceeecCccccccC-CCceeHHHHHH-HHHHHHHHHhc
Confidence 87754 56788999999988764 89999999998 68888887775
No 7
>PRK05762 DNA polymerase II; Reviewed
Probab=100.00 E-value=6e-108 Score=1029.71 Aligned_cols=635 Identities=21% Similarity=0.323 Sum_probs=525.0
Q ss_pred HHHHHhhc-CCCcccccccccccCCcCCcceEeecccCccccccccc-CCcceEEEEEEEeccCCCCCCCCCCCcEEEEE
Q psy5921 335 SFIRKQLE-TPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVE-NYYLTVLAVEIHAISRALLKPDPAYDEVKAIF 412 (1200)
Q Consensus 335 ~f~~~~~~-~g~cwl~i~~~i~~~~~~s~~~fev~~~~~~~~~~~~~-~p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs 412 (1200)
.|+. -+. .+..|...+.. +. ++...+.... +++... .|+|++|||||||... ++|.+|+
T Consensus 114 R~li-d~~i~~~~w~~~~~~-~~-----~~~~~~~~~~---i~~~~~~~p~lrvlsfDIE~~~~---------~~i~sI~ 174 (786)
T PRK05762 114 RYLM-ERFITPCVWFSGEVE-QY-----TTDGVLRNAR---LKPAPDYRPPLKVVSLDIETSNK---------GELYSIG 174 (786)
T ss_pred hhee-eCCCCCcEEEEEEee-cc-----ccceeEEecc---eeeCCCCCCCCeEEEEEEEEcCC---------CceEEee
Confidence 4555 444 57779866532 11 2223332222 222222 3999999999999852 3799998
Q ss_pred EEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHh
Q psy5921 413 YYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL 492 (1200)
Q Consensus 413 ~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~l 492 (1200)
+. +.+.+ .++++..+... ....|..+.||++||.+|+++|+++|||||+|||+.+||||||.+||+.|
T Consensus 175 ~~---~~~~~----~vi~ig~~~~~-----~~~~v~~~~sE~~LL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~l 242 (786)
T PRK05762 175 LE---GCGQR----PVIMLGPPNGE-----ALDFLEYVADEKALLEKFNAWFAEHDPDVIIGWNVVQFDLRLLQERAERY 242 (786)
T ss_pred ec---CCCCC----eEEEEECCCCC-----CcceEEEcCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCcHHHHHHHHHHh
Confidence 74 11111 36777654321 01237889999999999999999999999999999999999999999999
Q ss_pred CCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh-cCCCCCHHHHHHHHcCCCcCCCCh----HhHH
Q psy5921 493 GLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV-NLQSYTFENIMYHVLHERIPLHSW----KLLT 567 (1200)
Q Consensus 493 gi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el-~L~SYsLe~Va~~vLg~rk~~~s~----~~L~ 567 (1200)
|++.. +||.+....++..........+.+.||+++|+|..+|+.. ++.+|+|++||+++||++++.++. .++.
T Consensus 243 gi~~~--~GR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~~k~~~~~l~sysL~~Va~~~Lg~~K~~~d~~~~~~eI~ 320 (786)
T PRK05762 243 GIPLR--LGRDGSELEWREHPFRSGYGFASVPGRLVLDGIDALKSATWVFDSFSLEYVSQRLLGEGKAIDDPYDRMDEID 320 (786)
T ss_pred CCCcc--cCcCCCccccccCCCCCCcceEEEeeEEEEEHHHHHHHhhccCCCCCHHHHHHHHhCCCeeccCccccHHHHH
Confidence 99853 8887654322211111123467899999999999999876 899999999999999988865443 7788
Q ss_pred HHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhccccccccccCCC
Q psy5921 568 CWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPS 647 (1200)
Q Consensus 568 ~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps 647 (1200)
++|..+ +..+++||++||.++++|+.++++++++.++|+++|++|+++. |++.++|++|+|+++++||++|++.
T Consensus 321 ~~~~~~----~~~l~~Y~l~Da~lt~~L~~kl~ll~~~~ela~l~g~~~~~v~--~~~~~~e~lll~~~~~~g~v~P~~~ 394 (786)
T PRK05762 321 RRFAED----KPALARYNLKDCELVTRIFEKTKLLPFLLERATVTGLPLDRVG--GSVAAFEHLYLPRAHRAGYVAPNLG 394 (786)
T ss_pred HHHhhh----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCcCHHHhC--ccHHhHHHHHHHHHHHCCEeCCCcc
Confidence 999854 7899999999999999999999999999999999999999985 7788899999999999999998653
Q ss_pred hhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhh
Q psy5921 648 IKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKK 727 (1200)
Q Consensus 648 ~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 727 (1200)
.. ....+.||+|++|++|||++ |++|||+|||||||++|||||+|++....+ +
T Consensus 395 ~~----~~~~y~Gg~V~~p~~G~y~~-V~~lDF~SLYPSIi~~~Ni~p~T~~~~~~~----------------~------ 447 (786)
T PRK05762 395 ER----PGEASPGGYVMDSKPGLYDS-VLVLDFKSLYPSIIRTFNIDPDGLVEGLAQ----------------P------ 447 (786)
T ss_pred cc----cccccCccEEecCCCCCcCc-eEEEEchhhhHHHHHHhCcCccceecCCCC----------------C------
Confidence 21 13557799999999999986 999999999999999999999999743211 0
Q ss_pred ccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCC
Q psy5921 728 LQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGR 807 (1200)
Q Consensus 728 l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR 807 (1200)
..+....|+|+.|++ ++||||++|++|++.|+++|+.|++ .+|+|+|++|||+|||+|+++ +|
T Consensus 448 -~~~~~~~~~~~~f~k---~~gilp~~l~~l~~~R~~~K~~~~~------------~~q~a~Ki~~Ns~YG~~g~~~-~r 510 (786)
T PRK05762 448 -PEESVAGFLGARFSR---EKHFLPEIVERLWEGRDEAKREMNK------------PLSQAIKIIMNAFYGVLGSSG-CR 510 (786)
T ss_pred -CcccccCCCCccccc---cCcchHHHHHHHHHHHHHHHHHHHH------------HHHHHHHhhhhhccccccccc-cc
Confidence 012345679999976 7999999999999999999999975 689999999999999999985 69
Q ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecC-CCCHHHHHHHHHHHHHHHHcc----------
Q psy5921 808 MPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAP-GKTKQEAFEIGKEIANVVTNN---------- 876 (1200)
Q Consensus 808 ~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~-~~~~~ea~~ig~ei~~~Vn~~---------- 876 (1200)
|||.++|++||+.||++|+.|++++++ +|++||||||||+||+++ +.+.+++.++|++|++.||+.
T Consensus 511 ~~~~~~A~~it~~Gr~~l~~~~~~~~~---~g~~viYgDTDSifv~~~~~~~~~~~~~~~~~l~~~in~~~~~~l~~~~~ 587 (786)
T PRK05762 511 FFDPRLASSITMRGHEIMKQTRELIEA---QGYQVIYGDTDSTFVWLGGAHDEEDAAKIGRALVQEINQWWQEHLQQEFG 587 (786)
T ss_pred ccChHHHHHHHHhHHHHHHHHHHHHHH---CCCEEEeecCCceEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhcc
Confidence 999999999999999999999999997 899999999999999998 678999999999999999983
Q ss_pred CCCceeeeeeceechhhcc--------ccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCH
Q psy5921 877 NPTPVKLKFEKVYQPCILQ--------TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDL 948 (1200)
Q Consensus 877 ~p~pi~LefEkvy~~~lL~--------~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~ 948 (1200)
+|.+++||||++|.+++|+ +||||||+.++. +.++++++||+|+||||||+++|+++++++++||.++++
T Consensus 588 ~~~~l~le~E~vy~~~~l~~~rg~~~~~KKrYag~~~~~--~~~~~~~~KGle~vRrD~~~~~k~~~~~vl~~il~~~~~ 665 (786)
T PRK05762 588 LESALELEFEKHYRRFFMPTIRGAEEGSKKRYAGLIQEG--DGDGRIVFKGLETVRTDWTPLAKEFQQELYERIFRGEPY 665 (786)
T ss_pred CCCceEEEEeeeeehhccccccccchhhhheEEEEEEcc--CCCceEEEEeeEEECCChHHHHHHHHHHHHHHHhcCCCH
Confidence 3679999999999999995 999999999843 345899999999999999999999999999999999886
Q ss_pred HHHHHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCCC----CCCCCCeeeEEEEeCCC
Q psy5921 949 SVVKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRA----EPRVSERVPYVIVSGAP 1023 (1200)
Q Consensus 949 ~~v~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~----~p~~GerI~YVI~~g~~ 1023 (1200)
++|+++.+++|++|++| ++|+|+|++ |.+++|+. +.+|||.+|+++++++... .++.|++|+|||+..++
T Consensus 666 ---~~~~~~~~~~l~~~~~~-~~lv~~k~l~k~~~~Y~~-~~~phv~aa~~~~~~~~~~~~~~~~~~g~~I~Yvi~~~g~ 740 (786)
T PRK05762 666 ---VDYVREVIDKLRAGELD-EKLVYRKRLRRPLDEYQR-NVPPHVRAARLADEMGYKVGRPLQYQNGGKIGYVITVNGP 740 (786)
T ss_pred ---HHHHHHHHHHHHcCCCc-hhEEEEehcCCCHHHcCC-CCCHHHHHHHHHHhcCcccCCcccCCCCCEEEEEEEeCCC
Confidence 88999999999999999 999999999 56899984 4589999999998876442 23679999999963322
Q ss_pred CCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhhh
Q psy5921 1024 GLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWY 1074 (1200)
Q Consensus 1024 ~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w~ 1074 (1200)
+ |.+. .+.+||++|||+|||.|+++|||.+||++.++..
T Consensus 741 ~---------~~~~---~~~~iD~~yYi~kql~p~~~ril~~~~~~~~~~~ 779 (786)
T PRK05762 741 E---------PLEY---RKSPIDYDYYIEKQLQPVADRILPFFGDDFATLK 779 (786)
T ss_pred C---------cHHh---cCCCCCHHHHHHHhhHHHHHHHHhhhCCCHHHHh
Confidence 1 2221 2578999999999999999999999999987643
No 8
>PHA02528 43 DNA polymerase; Provisional
Probab=100.00 E-value=1.2e-106 Score=1011.48 Aligned_cols=653 Identities=19% Similarity=0.243 Sum_probs=509.8
Q ss_pred CCcceEEEEEEEeccCCCCCCCCC--CCcEEEEEEEecCCCCCCCceEEEEEecCCCC------C-CcCCCCCeEEEEcC
Q psy5921 381 NYYLTVLAVEIHAISRALLKPDPA--YDEVKAIFYYLYTCPPEEDRKVGIILIGQESE------L-PEVRTKPIQMHFVS 451 (1200)
Q Consensus 381 ~p~LtvlSlDIeT~t~~~l~Pdp~--~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~------~-p~~~~~~~~V~~~~ 451 (1200)
.|.|+++||||||.++.+ +|+|+ .|||++|++. +... + ...++++..... . +.....+..+..|.
T Consensus 103 ~p~lrv~s~DIE~~~~~g-fP~p~~~~d~IisIsl~--~~~~-~--~~~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 176 (881)
T PHA02528 103 RSKIRIANLDIEVTAEDG-FPDPEEAKYEIDAITHY--DSID-D--RFYVFDLGSVEEWDAKGDEVPQEILDKVVYMPFD 176 (881)
T ss_pred CCCccEEEEEEEECCCCC-CCCcccCCCcEEEEEEe--cCCC-C--EEEEEEecCcccccccCCcccccccCCeeEEEcC
Confidence 389999999999987664 89999 7899999972 2221 1 112444421100 0 00112245677799
Q ss_pred CHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHH-hCCCCccccccccccccccc-CccccccceeeecceEEe
Q psy5921 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV-LGLNLNQELSRITEVEKRNS-SRDEVKNTQLQMPGRIVI 529 (1200)
Q Consensus 452 nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~-lgi~l~~~lgR~~~~~~~~~-s~~~~~~~~~~i~GRlvl 529 (1200)
+|++||.+|+++|+.+|||||+|||+++||||||.+||+. +|.....++++.+....... ....+....+.+.||+++
T Consensus 177 sE~eLL~~F~~~i~~~DPDII~GyNi~~FDlpYL~~Ra~~~lg~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~i~GRv~l 256 (881)
T PHA02528 177 TEREMLLEYINFWEENTPVIFTGWNVELFDVPYIINRIKNILGEKTAKRLSPWGKVKERTIENMYGREEIAYDISGISIL 256 (881)
T ss_pred CHHHHHHHHHHHHHHhCCcEEEecCCccCCHHHHHHHHHHHcCcccccccccccccccccccccccccceeEEEcceEEE
Confidence 9999999999999999999999999999999999999996 58765333332221111000 000011224689999999
Q ss_pred ehHHHHHhh--hcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHH
Q psy5921 530 NLWRLLRHE--VNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSE 607 (1200)
Q Consensus 530 Dl~r~~r~e--l~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~e 607 (1200)
|+|.+++.. .++.||+|++||+++||++|+++++.+|.+||.++ ..++++||++||.++++|+.++++++++.+
T Consensus 257 D~~dl~k~~~~~~l~SYsLe~VA~~~LG~~K~d~~~~eI~~l~~~d----~~~l~~Ynl~Da~Lv~~L~~kl~ll~~~~e 332 (881)
T PHA02528 257 DYLDLYKKFTFTNQPSYRLDYIAEVELGKKKLDYSDGPFKKFRETD----HQKYIEYNIIDVELVDRLDDKRKLIELVLS 332 (881)
T ss_pred eHHHHHHHhhhcccccCCHHHHHHHHhCCCCccCCHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999973 37999999999999999999999999999999865 578999999999999999999999999999
Q ss_pred HHHhhcccchhhccCcchhhhhhhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHH
Q psy5921 608 MARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSV 687 (1200)
Q Consensus 608 larl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSI 687 (1200)
+|+++|++|++++ |+...++++++|+++++|||+|++.. + ....+.||+||||++|||+ +|+||||+||||||
T Consensus 333 ~ArltGi~l~~v~--sq~~~~~~lll~~~~r~g~viP~~~~--~--~~~~y~Gg~V~eP~pGlY~-~VvVLDF~SLYPSI 405 (881)
T PHA02528 333 MAYYAKINFEDVF--SPIKTWDAIIFNSLKEEKIVIPENKS--H--KKQKYAGAFVKEPVPGAYR-WVVSFDLTSLYPSI 405 (881)
T ss_pred HHHHhCCcHHHhc--chHhHHHHHHHHHHHHcCcccCCccc--c--CCCCCCCcEEecCCCCccc-ceEEEeccccChHH
Confidence 9999999999995 34444679999999999999976532 1 2356789999999999997 69999999999999
Q ss_pred HHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHH
Q psy5921 688 IIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQ 767 (1200)
Q Consensus 688 IiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk 767 (1200)
|++|||||+|+++........ +. .++......+++.++|||+.|++. ++||||++|++|++.|+++|+
T Consensus 406 IiayNIcp~Tlv~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~p~G~~F~k~--~~GiLP~iL~~Ll~~R~~~Kk 473 (881)
T PHA02528 406 IRQVNISPETIAGTFHVAPVH-----EY-----INKTAPRPSDEYSCSPNGWMYRKD--IRGVIPTEIKKVFDQRKIYKK 473 (881)
T ss_pred HHHhCCChhhccccccccccc-----cc-----cccccCCCCCceeEcCCCCeEeCC--CCeehHHHHHHHHHHHHHHHH
Confidence 999999999998753211000 00 000000112567889999999886 799999999999999999999
Q ss_pred HhhhccCCH--------------------------------------------------HHHHHHHHHHHhccccccccc
Q psy5921 768 SMKEYKSNA--------------------------------------------------ALQRVLHARQLGLKLIANVTY 797 (1200)
Q Consensus 768 ~mK~~~~d~--------------------------------------------------~~~~~ld~rQ~ALKllaNS~Y 797 (1200)
.||+++.+. .++++||.+|+|+|++|||+|
T Consensus 474 ~Mk~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~d~~Q~A~KI~~NS~Y 553 (881)
T PHA02528 474 KMLAAERNAELIKTILEDLNDSVDTPIDVDYYFDFSDEFKAELKTLTKSSLKALLEECEKEIALCNTIQMARKILINSLY 553 (881)
T ss_pred HHHhccccccccccccccccccccccccccccccchhhhhhhhcccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhh
Confidence 998764321 456789999999999999999
Q ss_pred CccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcc----c--CcCcceEEeccCCceeEecCCC-CHH------HHH-
Q psy5921 798 GYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNN----T--SKWQCRVVYGDTDSMFVLAPGK-TKQ------EAF- 863 (1200)
Q Consensus 798 Gy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~----~--~~~g~~VIYGDTDSvfV~~~~~-~~~------ea~- 863 (1200)
||+|+. .+||||.++|++||+.||++|+.+.+.+++ . ...+++||||||||+||++++. +.. +..
T Consensus 554 G~lG~~-~~r~y~~~~A~aiT~~Gr~~I~~i~~~~~e~l~~~~~~~g~~~VIYGDTDSvfV~~~~~~~~~~~~~~~~~~~ 632 (881)
T PHA02528 554 GALGNE-HFRYYDLRNAEAITLFGQLAIQWIERKMNEYLNKLCKTEDEDYVIYGDTDSIYVNLDPLVEKVGEDKFKDTNH 632 (881)
T ss_pred hhccCc-CccCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhcccCCcEEEEEcCCeeEEEeCCcchhhhhccchhHHH
Confidence 999998 579999999999999999988765544422 1 1234799999999999998743 110 100
Q ss_pred ------HHH------------HHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCCCC--CCcEEEEeeeee
Q psy5921 864 ------EIG------------KEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQD--KPIYEAKGIETV 923 (1200)
Q Consensus 864 ------~ig------------~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~--~~~~~~KGie~v 923 (1200)
+++ .++++.+|... .++.|++|++|.+++|.+||||||+.|+.+++. ++++++||+|+|
T Consensus 633 lv~~~~~~~~~~l~~~~~~~~~el~e~~~~~~-~~~~m~~ek~~~~~~~~sKKRYAgl~~~~~g~~~~~~kl~~kGlEtv 711 (881)
T PHA02528 633 WVDFLDKFCKERMEPYIDSSYRELCEYMNNYE-HLMFMDREAIAGPGFWTAKKRYALNVWDSEGTRYAEPKLKIMGIETQ 711 (881)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhc-cccchhHHHHhhHhhhhccccEEEEeccCCCcccCCCeEEEecceee
Confidence 111 26777777654 569999999999999999999999998765532 479999999999
Q ss_pred cCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCChhhhhHhhcccCCCCCC------CCCCchHHHHHH
Q psy5921 924 RRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYK------PGACVPALSLAR 997 (1200)
Q Consensus 924 RRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~lr~~~~Y~------~~~~~P~v~vA~ 997 (1200)
|||||+++|++|+++++.||.+++ +.+++|+++.++++++ +|++++++.+..|++++|. .+++.|||.+|+
T Consensus 712 RsD~~~lak~~q~~vi~~Il~~~~-e~~~~yvk~~i~~~~~--~d~~~i~~~~~~~~l~~Y~~~~~~y~k~~pphV~aA~ 788 (881)
T PHA02528 712 RSSTPKAVQKALKEAIRRILQEGE-ESLQEYIKEFEKEFRK--LDYEEIAFVSSANNIAKYSDDKGIPGKGCPIHIRGAL 788 (881)
T ss_pred ecchHHHHHHHHHHHHHHHHhCCc-HhHHHHHHHHHHHHHc--CCHHHEEeeeccCCHHHhcccccccccCCCHHHHHHH
Confidence 999999999999999999999866 8899999999999997 9999999985557778873 345678999888
Q ss_pred ---HHHHhCCCC-CCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCCC--ChHHHhhcc------chhHHHHHHhh
Q psy5921 998 ---QWVLTDPRA-EPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRL--NSEYYITRV------IIPPLERCFLL 1065 (1200)
Q Consensus 998 ---r~~~~d~~~-~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~i--D~~YYi~kq------i~ppl~Rll~~ 1065 (1200)
++++.+.|. .++.|++|.||+++|++ ++.++|. |.+...+-...+ |.+||++.| ++||+.||+++
T Consensus 789 ~~~~~~~~~~g~~~~~~G~kI~~v~lk~~~--~~~~~~~-~~~~~~~~p~~~~~d~~~~iD~~~~~~k~~~~p~~~il~~ 865 (881)
T PHA02528 789 LYNRAVKGTLGYPPIQEGEKVMVLPLKEPN--PIGENCI-AWPSGTELPKEIRSDLLKWVDYNLLFEKSFIKPLKNITEA 865 (881)
T ss_pred HHHHHHhhhcCCcccCCCCEEEEEEEeCCC--CCCCceE-eccccccCHHHHhhchhheechhhhhhhhhhhHHHHHHHH
Confidence 776642233 78999999999999865 4556665 444322212356 999999999 99999999999
Q ss_pred cCCCh
Q psy5921 1066 LGTPV 1070 (1200)
Q Consensus 1066 ~G~d~ 1070 (1200)
+|++.
T Consensus 866 ~g~~~ 870 (881)
T PHA02528 866 IGWDY 870 (881)
T ss_pred hCCCc
Confidence 99976
No 9
>COG0417 PolB DNA polymerase elongation subunit (family B) [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.8e-104 Score=995.11 Aligned_cols=629 Identities=31% Similarity=0.472 Sum_probs=548.5
Q ss_pred ccCCcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHH
Q psy5921 379 VENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFS 458 (1200)
Q Consensus 379 ~~~p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~ 458 (1200)
...|+|++|+|||||.++.+.+|++.+|+|++|+++....... + ...... ...+..|..+.+|.+||+
T Consensus 149 ~~~p~l~~la~DiE~~~~~~~~~~~~~d~~~~i~~~~~~~~~~-------~--~~~~~~---~~~~~~v~~~~~e~e~l~ 216 (792)
T COG0417 149 DVRPPLRVLAFDIETLSEPGKFPDGEKDPIIMISYAIEAEGGL-------I--EVFIYT---SGEGFSVEVVISEAELLE 216 (792)
T ss_pred CcCCCceEEEEEEEEecCCCCCCCccCCceEEEEEEeccCCCc-------c--cccccc---CCCCceeEEecCHHHHHH
Confidence 3479999999999999999999999999999999988655421 0 000000 011344899999999999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHH-h
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR-H 537 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r-~ 537 (1200)
+|.+++..+|||||+|||+++||||||.+||..+|++++ +||.+........ ......||+++|+|..++ +
T Consensus 217 ~~~~~i~~~dPdVIvgyn~~~fd~pyl~~Ra~~lgi~~~--~gr~~~~~~~~~~------~~~~~~Gr~~iDl~~~~~~~ 288 (792)
T COG0417 217 RFVELIREYDPDVIVGYNGDNFDWPYLAERAERLGIPLR--LGRDGSELRVRKS------GFSSQVGRLHIDLYPALRRR 288 (792)
T ss_pred HHHHHHHhcCCCEEEeccCCcCChHHHHHHHHHhCCCcc--ccccccccceeec------ccccccceEEEecHHHHhhh
Confidence 999999999999999999999999999999999999987 8887654322111 111112999999999999 6
Q ss_pred hhcCCCCCHHHHHHHHcCCCc-CCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccc
Q psy5921 538 EVNLQSYTFENIMYHVLHERI-PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 616 (1200)
Q Consensus 538 el~L~SYsLe~Va~~vLg~rk-~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~ 616 (1200)
.+++.+|+|++++..+|++.+ .+.....+.++|.... ....+.+.||+.|+.++++++.+.+++++..++++++|+++
T Consensus 289 ~~~~~~ysl~~v~~~~l~~~k~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~e~s~vsg~~~ 367 (792)
T COG0417 289 PLNLKSYSLEAVSEALLGEGKREDIPYDSMEEIWPDWA-DSKLRLLLYNLSDADLVLRILLKNELLPLLIELSRVSGLPL 367 (792)
T ss_pred hcccccccHHHHHHHhcccccccccCccchhhccccCc-cchhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhCCCH
Confidence 899999999999999999766 7777777776666543 34788999999999999999999999999999999999999
Q ss_pred hhhccCcchhhhhhhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCcc
Q psy5921 617 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFS 696 (1200)
Q Consensus 617 ~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~t 696 (1200)
.++..+|++.++|++|+|+|++.|+++|++..... +..+.||+||+|++|+|++ |++|||+|||||||++|||||+
T Consensus 368 ~~~~~~~~~~~~~~~l~~~a~~~~~~iP~~~~~~~---~~~~~Gg~V~~P~~Gly~~-V~vLDF~SLYPSII~~~Ni~p~ 443 (792)
T COG0417 368 DDVTRAGSGARVEGLLLREAKRRGELIPNKEERPE---RKKYKGGLVLEPEPGLYEN-VLVLDFSSLYPSIIIKYNISPD 443 (792)
T ss_pred HHHcccchhHHHHHHHHHHHhhcCEeccCccccch---hhhcCCCEEccCCccccCc-EEEEEccccChHHHHHhCCCcc
Confidence 99999999999999999999999999987654221 1457799999999999998 9999999999999999999999
Q ss_pred ccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCH
Q psy5921 697 TCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNA 776 (1200)
Q Consensus 697 T~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~ 776 (1200)
|+....+. ...+|+|..++....++|++|++|++|++.|.++|+.||+.+ ++
T Consensus 444 T~~~~~~~---------------------------~~~~~~~~~~~~~~~~~G~lp~il~~L~~~R~~~K~~~k~~~-~~ 495 (792)
T COG0417 444 TLVEEDCS---------------------------DDYSPPGVGHGFCKREKGFLPEILEELLDRRDEIKKKMKKEK-DP 495 (792)
T ss_pred eecCCCcc---------------------------ccccCCCCcccccccCCCchHHHHHHHHHHHHHHHHHhcccC-Ch
Confidence 99754221 122455555555566899999999999999999999999876 45
Q ss_pred HHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCC
Q psy5921 777 ALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPG 856 (1200)
Q Consensus 777 ~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~ 856 (1200)
.++++||.||+|||++|||+|||+|++. +||||.++|++||++||++|..|++++|+ +|++|||||||||||.+++
T Consensus 496 ~e~~~~d~rQ~AlKvl~NS~YGy~G~~~-~rf~~~e~a~~VT~~gR~ii~~t~~~ae~---~G~~ViyGDTDSlfv~~~~ 571 (792)
T COG0417 496 SERKLLDGRQLALKVLANSFYGYLGYSN-SRFYCIECAESVTAFGREILRETKELAEE---MGLRVIYGDTDSLFVTLPG 571 (792)
T ss_pred HHHHHHHHHHHHHHHHHhhccccccccC-CccCCHHHHHHHHHHHHHHHHHHHHHHHH---cCCEEEEECCceeEEEcCC
Confidence 5889999999999999999999999985 59999999999999999999999999997 9999999999999999998
Q ss_pred CCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhccc-cceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHH
Q psy5921 857 KTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQT-KKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKIL 935 (1200)
Q Consensus 857 ~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~-KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~ 935 (1200)
...+||+++|+++++.||..++.+|+||||++|++++|.. ||||||+.+++ +++++||+|++|||||+++|++|
T Consensus 572 ~~~~ea~~~~~~l~~~vn~~~~~~i~lE~e~~y~~~ll~~~KKRYag~~~~g-----~~~~vKG~e~~RrD~~~l~k~~q 646 (792)
T COG0417 572 ATYEEAIKIGEELVEEVNERLPSGIELEVEKVYKRFLLPTAKKRYAGLLEDG-----DKIEVKGLETVRRDWPELVKEFQ 646 (792)
T ss_pred CchHHHHHHHHHHHHHHhhcCCCCeEEEeeehhhhhhccccccceEEEeccC-----CEEEEeeeEEEecCccHHHHHHH
Confidence 8899999999999999999988999999999999999998 99999998753 28999999999999999999999
Q ss_pred HHHHHHHhccCCHHHH-HHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCe
Q psy5921 936 KKSLCLLFETKDLSVV-KEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013 (1200)
Q Consensus 936 ~~vL~~Ll~~~d~~~v-~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~Ger 1013 (1200)
.++|+.|+.++|++++ +.|++....++++|++++++|+|+|++ |.+.+|... .||+.+|++++.+ +..+++|++
T Consensus 647 ~~vl~~il~~~~~e~~~~~~~~~v~~~l~~~~~~~~~lvi~k~l~k~~~ey~~~--~p~~~~a~~~~~~--g~~~~~g~~ 722 (792)
T COG0417 647 REVLEVLLSGRDVEEALAKYVRDVIEKLRNGEVPIEKLVISKRLTRPLSEYKAN--KPHVVVAARLRKR--GINVKPGDR 722 (792)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCcCHHHheeeeeeccChhhhcCC--CcHHHHHHHHHhC--CCCCCCCCE
Confidence 9999999999999999 999999999999999999999999999 557788754 6999999999877 788999999
Q ss_pred eeEEEEeCCCCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhhhhc
Q psy5921 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKN 1076 (1200)
Q Consensus 1014 I~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w~~~ 1076 (1200)
|+|||+++. .++.+|+..|..+.. .+..||++||+++||+||++|++++||.+...|..+
T Consensus 723 i~Yvi~~~~--~~~~~ra~~~~~~~~-~~~~iD~~YY~~~Ql~~~~~ril~~i~~~~~~~~~~ 782 (792)
T COG0417 723 IPYVIVKGK--GKLVERAEPPELVDE-ENSPIDYEYYITKQLLPALERILEPIGGNFAELKGE 782 (792)
T ss_pred eEEEEecCC--CcccccccCceeccc-ccccCCHHHHHhccchHHHHHHHHHhcccHhhhccc
Confidence 999999887 467788886665544 457899999999999999999999999999888655
No 10
>PRK05761 DNA polymerase I; Reviewed
Probab=100.00 E-value=3.5e-99 Score=943.89 Aligned_cols=561 Identities=19% Similarity=0.252 Sum_probs=472.1
Q ss_pred cCCcceEEEEEEEeccCC-CCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHH
Q psy5921 380 ENYYLTVLAVEIHAISRA-LLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFS 458 (1200)
Q Consensus 380 ~~p~LtvlSlDIeT~t~~-~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~ 458 (1200)
..|+|++|||||||.+.. +.+|+ .+|++||.
T Consensus 184 ~~P~lk~lsfDIE~~~~~~g~~P~------------------------------------------------~~E~eLL~ 215 (787)
T PRK05761 184 PIPKIKRIAIDIEVYTPAKGRIPD------------------------------------------------DSEKELLA 215 (787)
T ss_pred CCCCcceEEEEEEeccCcCCCCCC------------------------------------------------CCHHHHHH
Confidence 469999999999999653 23332 48999999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh-
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH- 537 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~- 537 (1200)
+|+++|+++||||+ ||+.+||||||.+||..+|++.. .+++.. -.|+.++|++..++.
T Consensus 216 ~f~~~i~~~dPdi~--yN~~~FDlPYL~~Ra~~lgi~~~-~~~~~~------------------~~~~~~iDl~~~~~~~ 274 (787)
T PRK05761 216 ELFDIILEYPPVVT--FNGDNFDLPYLYNRALKLGIPKE-EIPIEP------------------GRAGIHIDLYKFFQNK 274 (787)
T ss_pred HHHHHHHhcCCEEE--EcCCcchHHHHHHHHHHhCCCch-hccccc------------------CCCceEEechhheeec
Confidence 99999999999986 99999999999999999999753 122210 114446788776542
Q ss_pred ---------hhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHh--hcchhhhhHH
Q psy5921 538 ---------EVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLI--EQLDFIGRTS 606 (1200)
Q Consensus 538 ---------el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll--~kL~ii~~~~ 606 (1200)
.+++++|+|++|++++||+.|.+++ .++.+ .++.++++||++||.++++|+ .+..++++..
T Consensus 275 ~~~~y~~~~~~~~~~ysL~~Va~~~Lg~~K~~~~-~~i~~-------~~~~~l~~Y~l~Da~l~~~L~~f~~~~~l~~~~ 346 (787)
T PRK05761 275 AVRSYAFYGKYRHREARLDAVGRALLGISKVELE-TNISE-------LDLEELAEYNFRDAEITLKLTFFNNELVLKLIL 346 (787)
T ss_pred ceeeeeccceeecccCChHHHHHHHhCCCccccc-ccccc-------cCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH
Confidence 1345699999999999999888776 44432 248899999999999999985 5778899999
Q ss_pred HHHHhhcccchhhccCcchhhhhhhhhhccccccccccCCCh----hh-h----cccCCCCCCCeeeccCCCcccCCeEE
Q psy5921 607 EMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSI----KQ-R----AHMRAPESLPLILEPESRLYTDPIIV 677 (1200)
Q Consensus 607 elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~----~~-~----~~~~~~~~GglVleP~~G~Y~~pV~v 677 (1200)
+||+++|+|++++..+|.+.+||++|+++|+++|+++|++.. .. . ......+.||+|++|++|+|++ |++
T Consensus 347 elarit~lpl~~v~r~~~g~~i~~~l~~~a~~~~~liP~~~~~~~~~~~~~~~~~~~~~~y~Gg~V~~P~~G~y~~-V~v 425 (787)
T PRK05761 347 LLSRISKLPIEELSRATISTWISNLEYWEHRKRGWLIPWKEDILRLDHEVYKKAIIKGKKYRGGLVFQPPPGIFFN-VYV 425 (787)
T ss_pred HHHHHHCcCHHHHhccCHHHHHHHHHHHHHHhCCEeCCCCccccccccccccccccccCCcCCcEEeccCCCceee-EEE
Confidence 999999999999965566789999999999999999987543 11 0 0123568899999999999997 999
Q ss_pred eecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHH
Q psy5921 678 LDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQE 757 (1200)
Q Consensus 678 LDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~ 757 (1200)
|||+|||||||++|||||+|+++..+... ......+.|+.|++. ++|++|.+|+.
T Consensus 426 lDF~SLYPSIi~~~Ni~p~T~~~~~~~~~-----------------------~~~~~~~~~~~~~~~--~~gl~~~il~~ 480 (787)
T PRK05761 426 LDFASLYPSIIVKWNLSPETVRIPECKCH-----------------------YDDEVPELGHSVCDD--RPGLTSVLVGL 480 (787)
T ss_pred eeecccchHHHHHhCCChhhccCcccccc-----------------------ccCCCCCCCceeecC--CCCchHHHHHH
Confidence 99999999999999999999975321100 001111356778774 89999999999
Q ss_pred HHHHHHHHHHHhhhcc-CCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy5921 758 ILDTRLMVKQSMKEYK-SNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTS 836 (1200)
Q Consensus 758 Ll~~R~~vKk~mK~~~-~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~ 836 (1200)
|++.|+++|+.|++.+ .++.++++||.+|+|+|++|||+|||+|+. .+||||.++|++||+.||++|++|++++|+
T Consensus 481 l~~~R~~~k~~~~~~~~~~~~~~~~ld~~Q~AlKi~~NS~YGy~G~~-~~r~~~~~~A~~IT~~GR~~l~~t~~~ie~-- 557 (787)
T PRK05761 481 LRDFRVKIYKKKAKDPNLDEERRAWYDVVQRALKVFLNASYGVFGAE-NFKLYRIEVAESITALGREILLSTKKKAEE-- 557 (787)
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHHhheeeeeccccccccc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence 9999999999998764 378899999999999999999999999998 479999999999999999999999999997
Q ss_pred cCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhcc-ccceeEEEEeecCCCCCCcE
Q psy5921 837 KWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQ-TKKRYVGYMYETADQDKPIY 915 (1200)
Q Consensus 837 ~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~-~KKRYag~~~~~~~~~~~~~ 915 (1200)
+|++|||||||||||+.+. .+++ ++++++|++.+ +++|||||+|++++|. +||||||+..+ +++
T Consensus 558 -~g~~VIYGDTDSvfv~~~~--~~~~----~~l~~~i~~~~--~i~LE~Ek~y~~~l~~~~KKrYag~~~d------gki 622 (787)
T PRK05761 558 -LGLKVLYGDTDSLFVWGPT--KESL----EELIKEIEERT--GIDLEVDKTYDWVAFSGLKKNYFGVLKD------GKV 622 (787)
T ss_pred -cCCEEEEEeCceEEEECCC--HHHH----HHHHHHHHHhC--CCceEEEEEEEEEEEecccceEEEEecC------CeE
Confidence 8999999999999999764 3333 46778888876 5999999999999985 99999999742 689
Q ss_pred EEEeeeeecCCchHHHHHHHHHHHHHHhccCCHH-------HHHHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCC
Q psy5921 916 EAKGIETVRRDGCPAVSKILKKSLCLLFETKDLS-------VVKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPG 987 (1200)
Q Consensus 916 ~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~-------~v~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~ 987 (1200)
++||+|+||||||+++|++++++|+.||.++|++ ++++|+++.+.+|++|++|+++|+|+|++ |.+++|+..
T Consensus 623 ~~KG~e~vRrD~~~~~k~~~~~vl~~ll~~~~~~~~~~~~~~~~~~v~~~~~~l~~g~~~~~~lvi~k~l~k~~~~Y~~~ 702 (787)
T PRK05761 623 KIKGIVAKKRNTPEFVKELQREVLEVLKSIRSPEDVEKVKDEIEDVLKRYYEKLRAKDYPLDELAIRVRLSKPLDEYTKN 702 (787)
T ss_pred EEEEEEEEeCCchHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHHHHHcCCCCHHHEEEEeeecCCHHHhcCC
Confidence 9999999999999999999999999999999988 89999999999999999999999999999 568899864
Q ss_pred CCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcC
Q psy5921 988 ACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLG 1067 (1200)
Q Consensus 988 ~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G 1067 (1200)
.+|||.+|+++++ .|..+++||||+|||+++.++. .|.++. .+.+||++||++ ||.|+++|||++||
T Consensus 703 -~~~hv~aa~~~~~--~g~~~~~Gd~I~YVi~~~~~~~-------~p~~~~--~~~~iD~~yYi~-~l~~~~~~il~~~g 769 (787)
T PRK05761 703 -TPQHVKAALQLRD--YGVEVSPGDIISYVKVDDKRGV-------KPVQLA--KLSEIDVEKYIE-LLRSALEQILSALG 769 (787)
T ss_pred -CchHHHHHHHHHh--CCCCCCCCCEEEEEEEcCCCCC-------Chhhhc--ccCCcCHHHHHH-HHHHHHHHHHHHhC
Confidence 3689999998875 4678899999999999876532 466652 256899999997 99999999999999
Q ss_pred CChhhhh
Q psy5921 1068 TPVLPWY 1074 (1200)
Q Consensus 1068 ~d~~~w~ 1074 (1200)
++..++-
T Consensus 770 ~~~~~l~ 776 (787)
T PRK05761 770 VSWDDIR 776 (787)
T ss_pred CCHHHHc
Confidence 9988753
No 11
>cd05534 POLBc_zeta DNA polymerase type-B zeta subfamily catalytic domain. DNA polymerase (Pol) zeta is a member of the eukaryotic B-family of DNA polymerases and distantly related to DNA Pol delta. Pol zeta plays a major role in translesion replication and the production of either spontaneous or induced mutations. Apart from its role in translesion replication, Pol zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen.
Probab=100.00 E-value=5.5e-99 Score=892.33 Aligned_cols=447 Identities=63% Similarity=1.014 Sum_probs=397.7
Q ss_pred cchhhhhhhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCccc
Q psy5921 623 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRV 702 (1200)
Q Consensus 623 Gsq~rvEslLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~ 702 (1200)
|+|.|||++|+|.|+++||++|+++..+...++++++||+||||++|||++||++|||+||||||||+|||||||+++..
T Consensus 1 g~q~rve~~llr~~~~~g~~~p~~~~~~~~~~~~~~~g~~V~eP~~G~y~~~V~vLDF~SLYPSIi~~~Nic~sT~~~~~ 80 (451)
T cd05534 1 GSQFRVESMLLRLAKPENYILPSPSRQQVAQQRALECLPLVMEPESGFYSDPVIVLDFQSLYPSIMIAYNYCYSTCLGRV 80 (451)
T ss_pred CCeEEeHHHHHHHHHHcCEEeecCchhccccccccccCcEeecCCcCcccCceEEEecccccHHHHHHhCcCcccccccc
Confidence 78999999999999999999999876655556788999999999999999999999999999999999999999998764
Q ss_pred ccCCCCC-CCCCcccc-cccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHH
Q psy5921 703 EHLGVSD-SFPFGCID-LNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780 (1200)
Q Consensus 703 ~~~~~~~-~~~~g~~~-~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~ 780 (1200)
+.....+ ...++... +...........+++.++|+|+.|+++++++||||++|++|++.|+++|+.||+.++++.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~f~~~~~~~Gilp~iL~~Ll~~R~~~K~~mk~~~~~~~~~~ 160 (451)
T cd05534 81 EELNGGGKFGFLGVKLYLPPPPLDLLLLKDDVTISPNGVMFVKKSVRKGILPKMLEEILDTRIMVKKAMKKYKDDKKLQR 160 (451)
T ss_pred cccccccccccccccccccccccccccCCCcEEECCCcceeecCCCCCCchHHHHHHHHHHHHHHHHHHhhCCCCHHHHH
Confidence 3221110 01111000 000000111123568889999999999999999999999999999999999999887789999
Q ss_pred HHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHH
Q psy5921 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQ 860 (1200)
Q Consensus 781 ~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ 860 (1200)
+||+||+|+|++|||+|||+|++|+|||||.++|++||+.||++|++|++++|+..++|++||||||||+||.+++.+.+
T Consensus 161 ~ld~~Q~AlKi~~NS~YGy~G~~~~gr~~~~~iA~~IT~~GR~~l~~~~~~ie~~~~~g~~VIYGDTDSvfv~~~~~~~~ 240 (451)
T cd05534 161 ILDARQLALKLLANVTYGYTAASFSGRMPCVEIADSIVQTGRETLERAIELIESTPKWGAKVVYGDTDSLFVLLPGRTKE 240 (451)
T ss_pred HHHHHHHHHHHHhhccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHhhccccCceEEeecccceeEecCCCCHH
Confidence 99999999999999999999999889999999999999999999999999999755689999999999999999998999
Q ss_pred HHHHHHHHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHH
Q psy5921 861 EAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLC 940 (1200)
Q Consensus 861 ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~ 940 (1200)
+++++|++|++.||+.+|.|++||||++|.+++|++||||||+.++++++..+++++||+|+||||||+|+|++++++|+
T Consensus 241 ~~~~~~~~i~~~in~~~~~~i~le~E~vy~~~ll~~KKrYag~~~~~~~~~~~ki~~KGle~vRrD~~~~~k~~~~~vl~ 320 (451)
T cd05534 241 EAFKIGKEIAEAVTAANPSPIKLKFEKVYHPCVLVTKKRYVGYKYESPDQTEPTFDAKGIETVRRDGCPAVQKILEKSLR 320 (451)
T ss_pred HHHHHHHHHHHHHHHhCCCCceeeHHHHHHHHHHHhhhhEEEEEEecCCCCCceEEeecceEEecccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999987666678999999999999999999999999999
Q ss_pred HHhccCCHHHHHHHHHHHHHHHHcCCCChhhhhHhhcccCCCCCCCCCC-chHHHHHHHHHHhCCCCCCCCCCeeeEEEE
Q psy5921 941 LLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGAC-VPALSLARQWVLTDPRAEPRVSERVPYVIV 1019 (1200)
Q Consensus 941 ~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~lr~~~~Y~~~~~-~P~v~vA~r~~~~d~~~~p~~GerI~YVI~ 1019 (1200)
.||.++|++.+++|+++.+.+|++|++|++||+|+|+++. +.|+..+. +||+.+|+|+++++++..|+.|+||+|||+
T Consensus 321 ~il~~~d~~~~~~~l~~~~~~l~~g~~~~~dlii~k~l~~-~~y~~~~~~p~hv~~A~k~~~~~~~~~~~~G~rI~YViv 399 (451)
T cd05534 321 ILFETKDLSTVKSYLQRQWSKLLQGRVSIQDFIFAKEVRL-GTYKEGATLPAGAIVALRRMEKDPRAEPQYGERVPYVVV 399 (451)
T ss_pred HHhccCCHHHHHHHHHHHHHHHHcCCCCHHHeEEEEEeec-cccCccCCCChHHHHHHHHHHhCCCCCCCCCCEEEEEEE
Confidence 9999999999999999999999999999999999999963 45544433 478999999999998889999999999999
Q ss_pred eCCCCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCCh
Q psy5921 1020 SGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPV 1070 (1200)
Q Consensus 1020 ~g~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~ 1070 (1200)
+|.++.++.+|+++|.++..+.+++||++|||++||+||+.|||++||+++
T Consensus 400 ~~~~~~~~~~ra~~~~~~~~~~~~~iD~~yYi~~Qi~~~~~ril~~~g~~~ 450 (451)
T cd05534 400 RGEPGSRLIDLVVSPEEFLADPSLRLDAEYYITKQIIPALDRLFNLVGVDV 450 (451)
T ss_pred eCCCCCcHHHhccCHHHHhhcCCCCCChHHHHHhcCHHHHHHHHHHcCCcC
Confidence 998888899999999988777789999999999999999999999999986
No 12
>cd05533 POLBc_delta DNA polymerase type-B delta subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. Presently, no direct data is available regarding the strand specificity of DNA polymerase during DNA replication in vivo. However, mutation analysis supports the hypothesis that DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand.
Probab=100.00 E-value=5.2e-89 Score=796.90 Aligned_cols=384 Identities=34% Similarity=0.607 Sum_probs=352.8
Q ss_pred CCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCC
Q psy5921 657 PESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP 736 (1200)
Q Consensus 657 ~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sP 736 (1200)
.|.||+||+|++|||++||++|||+|||||||++|||||||+++..+.. + .+ .+++..+|
T Consensus 2 ~Y~Gg~V~eP~~G~y~~~V~~lDF~SLYPSIi~~~Nic~~T~~~~~~~~------~-------~~-------~~~~~~~p 61 (393)
T cd05533 2 QYEGATVIEPIKGYYDVPIATLDFASLYPSIMMAHNLCYTTLLNKNTAK------K-------LP-------PEDYIKTP 61 (393)
T ss_pred CCCCeEeccCCCCCccCCeEEecCCCccHHHHHHhCcCccccccCcccc------c-------CC-------CcceEECC
Confidence 4679999999999999999999999999999999999999998642210 0 01 14567889
Q ss_pred CceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHH
Q psy5921 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDS 816 (1200)
Q Consensus 737 nG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~s 816 (1200)
+|..|++++.++||||++|++|++.|+++|+.||+.+ |+.++++||++|+|+|++|||+|||+|+++ |||||.++|++
T Consensus 62 ~~~~f~~~~~~~Gilp~iL~~Ll~~R~~~K~~mk~~~-d~~~~~~ld~~Q~AlKi~~NS~YG~~G~~~-~r~~~~~~A~~ 139 (393)
T cd05533 62 NGDYFVKSSVRKGLLPEILEELLAARKRAKKDLKEET-DPFKKAVLDGRQLALKISANSVYGFTGATV-GKLPCLEISSS 139 (393)
T ss_pred CCceeecCCCCCCchHHHHHHHHHHHHHHHHHHhhCC-CHHHHHHHHHHHHhhheeeeeccccccccc-CCccchHHHHH
Confidence 9999999888999999999999999999999999864 788899999999999999999999999984 79999999999
Q ss_pred HHHHHHHHHHHHHHHhccc------CcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceec
Q psy5921 817 VVSKGRETLQKAIETVNNT------SKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQ 890 (1200)
Q Consensus 817 IT~~GReiL~~a~~~ie~~------~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~ 890 (1200)
||+.||++|+.|++++|+. +.+|++|||||||||||++++.+.++++++|++|++.||+.||.|++||||++|.
T Consensus 140 iT~~GR~~l~~~~~~ie~~~~~~~g~~~~~~VIYGDTDSvfv~~~~~~~~~~~~~~~ei~~~i~~~~~~~i~Le~E~vy~ 219 (393)
T cd05533 140 VTSFGRQMIEKTKKLVEEKYTKANGYSHDAKVIYGDTDSVMVKFGVSDVEEAMKLGKEAAEYVSKKFIKPIKLEFEKVYF 219 (393)
T ss_pred HHHhHHHHHHHHHHHHHHhhcccccCCCceEEEecCCCceEEEcCCCCHHHHHHHHHHHHHHHHhcCCCCeEEeeHHHHH
Confidence 9999999999999999973 2358999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCChh
Q psy5921 891 PCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQ 970 (1200)
Q Consensus 891 ~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~ 970 (1200)
++|+++||||||+.|++++ ..+++++||+|++|||||+++|++++++|+.||.++|++.+++|+++.+++|.+|++|++
T Consensus 220 ~~ll~~KKrYag~~~~~~~-~~~ki~~KGle~vRRD~~~~~k~~~~~vl~~il~~~~~~~~~~~~~~~~~~l~~~~~~~~ 298 (393)
T cd05533 220 PYLLINKKRYAGLLWTNPD-KHDKMDTKGIETVRRDNCLLVQNVVETCLNKILIERDVEGAIEFVKGVISDLLQNKIDIS 298 (393)
T ss_pred HHHHHHHhhheEEEeecCC-CCceeEEeceEEEcccchHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCCCHH
Confidence 9999999999999987643 357899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCCCChHH
Q psy5921 971 DMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEY 1049 (1200)
Q Consensus 971 dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~Y 1049 (1200)
+|+|+|++ +.+++|+.. +||+++|+|+++++++..|++||||+|||+++.++.++.+++.+|.+++++ +++||++|
T Consensus 299 ~l~i~k~l~k~~~~Y~~~--~phv~~A~rl~~~~~g~~~~~G~rI~Yvi~~~~~~~~~~~~a~~~~~~~~~-~~~iD~~y 375 (393)
T cd05533 299 LLVITKALTKTADDYAGK--QAHVELAERMRKRDPGSAPNVGDRVPYVIIKGAKGAKAYEKAEDPIYVLEN-NIPIDTQY 375 (393)
T ss_pred HEEEEeeecCChhhcCCC--CchHHHHHHHHhcCCCCCCCCCCEEEEEEEECCCCCcHHhhccCHHHHHhc-CCCCChHH
Confidence 99999999 457899854 799999999999988899999999999999987777889999999998765 68999999
Q ss_pred HhhccchhHHHHHHhhc
Q psy5921 1050 YITRVIIPPLERCFLLL 1066 (1200)
Q Consensus 1050 Yi~kqi~ppl~Rll~~~ 1066 (1200)
||++||+|||.|||+++
T Consensus 376 Yi~~qi~~pl~ri~~~~ 392 (393)
T cd05533 376 YLENQLSKPLLRIFEPI 392 (393)
T ss_pred HHHhcchHHHHHHHhhh
Confidence 99999999999999985
No 13
>cd05532 POLBc_alpha DNA polymerase type-B alpha subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. In most organisms no specific repair role, other than check point control, has been assigned to this enzyme. Pol alpha contains both polymerase and exonuclease domains, but lacks exonuclease activity suggesting that the exonuclease domain may be for structural purposes only.
Probab=100.00 E-value=2.8e-83 Score=750.82 Aligned_cols=384 Identities=28% Similarity=0.464 Sum_probs=343.7
Q ss_pred CCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEee
Q psy5921 655 RAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTI 734 (1200)
Q Consensus 655 ~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~ 734 (1200)
...+.||+|+||++|||++||++|||+|||||||++|||||+|+++..+.... .
T Consensus 5 ~~~y~Gg~V~eP~~G~y~~~V~~lDF~SLYPSIi~~~Ni~~~Ti~~~~~~~~~-----------------------~--- 58 (400)
T cd05532 5 KAKYAGGLVLEPKKGLYDKFILLLDFNSLYPSIIQEYNICFTTVDRADPDDED-----------------------D--- 58 (400)
T ss_pred cCCcCCceeecCCCCcccCceEEEeccccchHHHHHhcCChhhcccccccccC-----------------------C---
Confidence 45678999999999999999999999999999999999999999864321100 0
Q ss_pred CCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHH
Q psy5921 735 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVG 814 (1200)
Q Consensus 735 sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA 814 (1200)
..+ .|+....++||||++|++|+++|.++|+.||+.+ |+.++++||.+|+|+|++|||+|||+|+.+ +||||.++|
T Consensus 59 ~~~--~~~~~~~~~Gilp~~l~~l~~~R~~~K~~~k~~~-d~~~~~~~d~~Q~alKi~~NS~YG~~g~~~-~r~~~~~~A 134 (400)
T cd05532 59 EEP--PLPPSDQEKGILPRIIRKLVERRRQVKKLMKSEK-DPDKKAQLDIRQLALKLTANSMYGCLGFSY-SRFYAKPLA 134 (400)
T ss_pred ccc--cccccccCCCchHHHHHHHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHhhccccccccc-ccccChHHH
Confidence 012 2334456899999999999999999999999876 788999999999999999999999999985 699999999
Q ss_pred HHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhc
Q psy5921 815 DSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCIL 894 (1200)
Q Consensus 815 ~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL 894 (1200)
++||+.||++|+.|++++++ .|++|||||||||||.+++.+.++++++|+++++.||+.++ +++||||++|.+++|
T Consensus 135 ~~iT~~GR~~l~~~~~~~e~---~g~~ViYgDTDSifv~~~~~~~~~~~~~~~~i~~~in~~~~-~i~le~e~iy~~~ll 210 (400)
T cd05532 135 ALITSKGREILQKTKDLVEK---MNLEVIYGDTDSIMINTGTTDYEEAKKLGNKIKKEVNKSYK-KLEIDIDGVFKRLLL 210 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHH---cCCEEEEeCCCeEEEecCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHh
Confidence 99999999999999999997 79999999999999999988999999999999999999985 899999999999999
Q ss_pred cccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHcCCCChh
Q psy5921 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKD----LSVVKEYVEKQFSKIISGRISVQ 970 (1200)
Q Consensus 895 ~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d----~~~v~~yl~~~~~kl~~g~v~~~ 970 (1200)
++||||||+.+++++..++++++||+|++|||||+++|++++++|+.||.+++ ++.+.+|+++.+++|.+|++|++
T Consensus 211 ~~KKrYag~~~~~~~~~~~k~~~KGie~~RrD~~~~~k~~~~~vl~~ll~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~ 290 (400)
T cd05532 211 LKKKKYAALKVVDDDKGKLKKEVKGLDIVRRDWCPLSKEIGNYVLDQILSDKSREDIVENIHEYLRKINEDLRNGKIPLE 290 (400)
T ss_pred hhhhcceEEEeecCCccceeeEEeceeEEecccHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHcCCCCHH
Confidence 99999999999876556689999999999999999999999999999999887 46677999999999999999999
Q ss_pred hhhHhhccc-CCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCCCChHH
Q psy5921 971 DMTFAKEYR-GQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEY 1049 (1200)
Q Consensus 971 dlii~K~lr-~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~Y 1049 (1200)
+|+|+|+++ .+++|+.++..||+.+|+||++++ ..++.|+||+|||++++++.++.+|++.|.++..+.++.+|++|
T Consensus 291 ~lii~k~l~k~~~~Y~~~~~~~hv~~A~rl~~~g--~~~~~G~rI~Yvi~~~~~~~~~~~ra~~~~~~~~~~~~~iD~~y 368 (400)
T cd05532 291 KFIITKQLTKNPEEYPDKKSLPHVQVALRMNKRG--RKVKAGDTIPYIICKDGSSKSLADRAYHPDEVKKNENLKIDIEY 368 (400)
T ss_pred HEEEeecccCChHHcCCCCCCcHHHHHHHHHHcC--CCCCCCCEEEEEEEeCCCCCchhhhccCHHHHhhccCCCCChHH
Confidence 999999994 578999866689999999998874 67899999999999988777789999999998755578999999
Q ss_pred HhhccchhHHHHHHhhcCCChhhhh
Q psy5921 1050 YITRVIIPPLERCFLLLGTPVLPWY 1074 (1200)
Q Consensus 1050 Yi~kqi~ppl~Rll~~~G~d~~~w~ 1074 (1200)
||++||+|||.|+|+++|.-...|.
T Consensus 369 Yi~~qi~~pl~ri~~~~~~~~~~~~ 393 (400)
T cd05532 369 YLSQQILPPISRLCEPIEGTDAVRL 393 (400)
T ss_pred HHHHhhHHHHHHHHHhccCCCHHHH
Confidence 9999999999999999944333343
No 14
>cd05536 POLBc_B3 DNA polymerase type-B B3 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some members of the archaea also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases. Structural comparison of the thermostable DNA polymerase type B to its mesostable homolog suggests several adaptations to high temperature such as shorter loops, disulfide bridges, and increasing electrostatic interaction at subdomain interfaces.
Probab=100.00 E-value=4.3e-81 Score=725.82 Aligned_cols=367 Identities=26% Similarity=0.432 Sum_probs=329.0
Q ss_pred CCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeC
Q psy5921 656 APESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTIS 735 (1200)
Q Consensus 656 ~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~s 735 (1200)
..+.||+|++|++|||++ |++|||+|||||||++|||||||+++..++ +.....
T Consensus 2 ~~y~Gg~V~~P~~G~y~~-V~~lDf~SLYPSii~~~Ni~~~Ti~~~~~~-------------------------~~~~~~ 55 (371)
T cd05536 2 ESYEGGIVLEPEKGLHEN-IVVLDFSSLYPSIMIKYNISPDTLVREGCE-------------------------DCDVEP 55 (371)
T ss_pred CCCCceEEeCCCCCCcCC-EEEEEcccccHHHHHHHCcChhhcCCCCcc-------------------------ccccCC
Confidence 357799999999999986 999999999999999999999999753221 001113
Q ss_pred CCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHH
Q psy5921 736 PSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGD 815 (1200)
Q Consensus 736 PnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~ 815 (1200)
++|+.|++. ++||||++|++|+++|+++|+.||+.++++.++++||++|+|+|++|||+|||+|+. +|||||.++|+
T Consensus 56 ~~~~~f~~~--~~Gilp~il~~ll~~R~~~K~~mk~~~~~~~~~~~~d~~Q~AlKi~~NS~YG~~g~~-~~r~~~~~~A~ 132 (371)
T cd05536 56 QVGHKFRKD--PPGFIPSVLEDLLEERRRIKEKMKKLDPESEEYKLLDERQRAIKILANSFYGYMGWA-NARWYCKECAE 132 (371)
T ss_pred CCCcEEecC--CCCchHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHHHHHhccccccccc-cccCCCHHHHH
Confidence 488899886 799999999999999999999999987777889999999999999999999999998 57999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhcc
Q psy5921 816 SVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQ 895 (1200)
Q Consensus 816 sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~ 895 (1200)
+||+.||++|++|++++++ .|++|||||||||||.+++.+. +++.++++++.||+.+| ++||||++|.+++++
T Consensus 133 ~iT~~GR~~l~~~~~~i~~---~g~~VIYgDTDSvfv~~~~~~~--~~~~~~~l~~~i~~~~~--i~le~E~vy~~~l~~ 205 (371)
T cd05536 133 AVTAWGREYIKTTIKIAEE---KGFKVIYGDTDSLFVKIDGADA--VKKKVKKLLKYINEELP--LELEIEKFYKRGFFV 205 (371)
T ss_pred HHHHHHHHHHHHHHHHHHH---cCCEEEEEcCcccEEeecCchH--HHHHHHHHHHHHHhcCC--eeEEEeeeeHHHHHh
Confidence 9999999999999999997 7999999999999999987643 66778899999999875 999999999999999
Q ss_pred ccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCChhhhhHh
Q psy5921 896 TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFA 975 (1200)
Q Consensus 896 ~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~ 975 (1200)
+||||+|+.. ++++++||+|++|||||+|+|+++.++|+.||.++|++.+.+++++.+++|++|++|++||+|+
T Consensus 206 ~KKrY~g~~~------~g~i~~KG~e~~RrD~~~~~k~~~~~~l~~ll~~~~~~~~~~~~~~~~~~l~~g~~~~~dlii~ 279 (371)
T cd05536 206 TKKRYAGLTE------DGKIDVVGLEVVRRDWSEIAKETQARVLEAILKEGDVEEAVKIVKEVIEKLKRGEVPPEKLVIW 279 (371)
T ss_pred hhceeEEEcc------CCeEEEEeeeeEeCccHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCCCHHHeEEe
Confidence 9999999853 2689999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCCCChHHHhhcc
Q psy5921 976 KEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRV 1054 (1200)
Q Consensus 976 K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kq 1054 (1200)
|+| |++++|+.. .||+.+|+|++++ +..+++|+||+|||+++++ ++.+|+..+. .+. .++.+|++||+++|
T Consensus 280 k~l~k~~~~Y~~~--~~hv~~a~~l~~~--g~~~~~G~rI~Yvi~~~~~--~~~dr~~p~~-~~~-~~~~iD~~yYi~~q 351 (371)
T cd05536 280 KQLTKDLSEYKAT--GPHVAAAKKLAKR--GYKVRPGTKIGYVIVKGSG--KISDRAYPYD-MVD-EKHKYDAEYYIDNQ 351 (371)
T ss_pred HHhcCCHHHhCCC--CcHHHHHHHHHhc--CCCCCCCCEEEEEEEECCC--cccccccCHH-Hhc-cCCCCCHHHHHHHh
Confidence 999 578999864 6899999999887 4578999999999998753 5678887554 444 47899999999999
Q ss_pred chhHHHHHHhhcCCChhh
Q psy5921 1055 IIPPLERCFLLLGTPVLP 1072 (1200)
Q Consensus 1055 i~ppl~Rll~~~G~d~~~ 1072 (1200)
|+||+.|||++||+|.++
T Consensus 352 i~~pl~ril~~~g~~~~~ 369 (371)
T cd05536 352 VLPAVLRILEAFGYKEED 369 (371)
T ss_pred cHHHHHHHHHHhCCCHHH
Confidence 999999999999999865
No 15
>PF00136 DNA_pol_B: DNA polymerase family B Several related DNA polymerases were too dissimilar to be included.; InterPro: IPR006134 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known, however, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain of DNA polymerase B appears to consist of more than one activities, possibly including elongation, DNA-binding and dNTP binding [].; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 1NOY_A 1NOZ_B 2CW7_A 2CW8_A 1WNS_A 2XHB_A 2VWK_A 2VWJ_A 1TGO_A ....
Probab=100.00 E-value=3.5e-81 Score=750.39 Aligned_cols=436 Identities=37% Similarity=0.599 Sum_probs=363.2
Q ss_pred cchhhhhhhhhhccccccccccCCChh-----hhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccc
Q psy5921 623 GSQFRVESIMLRLSRLNNFVAVSPSIK-----QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697 (1200)
Q Consensus 623 Gsq~rvEslLlr~a~~~~~I~p~ps~~-----~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT 697 (1200)
|||.|||++|+|+++++||++|++... ........+.||+|++|++|||+++|.+|||+|||||||++|||||+|
T Consensus 1 gq~~~v~~~ll~~~~~~~~~~p~~~~~~~~~~~~~~~~~~y~Gg~V~~P~~G~~~~v~~~lDF~SLYPsii~~~Ni~~~T 80 (466)
T PF00136_consen 1 GQQIRVESLLLREAHRRNYIIPSKKERPEGFTSKSEQKEKYEGGYVLEPKPGLYENVVSVLDFASLYPSIIIAYNICPET 80 (466)
T ss_dssp -CHHHHHHHHHHHHHHTTBE-B-HHHHHHTHHHHHHHCTCEEEC-BE--HSSEEEEEEEEEEETTHHHHHHHHTTHSTTT
T ss_pred CchhhHHHHHHHHHHHCCEEeeCCcccccccccccccccccccceeeccccccccCceeeeecccccHHHHHhccCCcce
Confidence 899999999999999999999876543 122356788899999999999998555899999999999999999999
Q ss_pred cCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHH
Q psy5921 698 CLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAA 777 (1200)
Q Consensus 698 ~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~ 777 (1200)
+++..++... .+.++........+...+++..|++...++||||.+|+.+++.|+++|+.|++.+++..
T Consensus 81 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gilp~~l~~~l~~R~~~K~~~~~~~~~~~ 149 (466)
T PF00136_consen 81 IVDDDECKDN-----------EVSPDIKYDYGPFIVGSPVGVRFVKKGVRPGILPEILEELLEKRKEIKKLMKKAKDPDE 149 (466)
T ss_dssp BTCTTHCSSE-----------EEHTTCCCCTCEEEECSCCSEEEESSTCSHHHHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_pred Eecchhhhcc-----------cccccccccccceeecCCceeeecccCcccccChHHHHHHHHHHHHHhhhhhhhccchh
Confidence 9976410000 00000000000123345677899999999999999999999999999999998864334
Q ss_pred HHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCC
Q psy5921 778 LQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGK 857 (1200)
Q Consensus 778 ~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~ 857 (1200)
+++.||++|+|+|++|||+|||+|+++ +||||.++|++||+.||++|+.|++++++. .+|++||||||||+||.+++.
T Consensus 150 ~~~~~d~~Q~a~Ki~~NS~YG~~g~~~-~r~~~~~~a~~iT~~GR~~i~~~~~~~~~~-~~g~~viYgDTDSv~v~~~~~ 227 (466)
T PF00136_consen 150 EYAILDARQLALKIIANSFYGYLGAKN-SRFYCKEIAEAITATGREIIKKAIEIIEEM-EFGFEVIYGDTDSVFVQFPDS 227 (466)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHTSTT-STT--HHHHHHHHHHHHHHHHHHHHHHHHH-SCTEEEEEEETTEEEEECTTC
T ss_pred hHHHHHHHHHhhcccceeeEeecCccc-cchhhhhhhheehhhhHhhHHHHHHHHHhh-cccceEEEEcccceEEecCCC
Confidence 489999999999999999999999985 599999999999999999999999999972 139999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHcc-CCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHH
Q psy5921 858 TKQEAFEIGKEIANVVTNN-NPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILK 936 (1200)
Q Consensus 858 ~~~ea~~ig~ei~~~Vn~~-~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~ 936 (1200)
+.+++++.+++++++|++. ++.+++||||++|.+++|++||||||+.+++.+...+++++||+|++|||+|+++|++++
T Consensus 228 ~~~~~~~~~~~l~~~i~~~~~~~~i~le~E~~y~~~~l~~KKrY~~~~~~~~~~~~~~~~~kG~e~~RrD~~~~~k~~~~ 307 (466)
T PF00136_consen 228 DKEDAKKKGEELAKEINSELFPSPIKLEFEKVYRWFILLAKKRYAGLKYDNEGKKKGKIKIKGLELVRRDWCPFVKDIQR 307 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCSTTHEEEEEEEEEEEEEEETTEEEEEETCCCEEETSEEEEESSSGGSSSSTHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHhhhhcCCCceeeecccEEEEEEEccCCccceeeeecccccceeEEeccccccCchhHHHHHHHH
Confidence 8899999999999999987 489999999999999999999999999998665546899999999999999999999999
Q ss_pred HHHHHHhccCCHHHH--------HHHHHHHHHHHHcCCCChhhhhHhhccc-CCCCCCCCCCchHHHHHHHHHHhCCCCC
Q psy5921 937 KSLCLLFETKDLSVV--------KEYVEKQFSKIISGRISVQDMTFAKEYR-GQAGYKPGACVPALSLARQWVLTDPRAE 1007 (1200)
Q Consensus 937 ~vL~~Ll~~~d~~~v--------~~yl~~~~~kl~~g~v~~~dlii~K~lr-~~~~Y~~~~~~P~v~vA~r~~~~d~~~~ 1007 (1200)
++|+.||.+.+.+.+ .+++++...++.++.+++++|+++++++ .+++|+... .||+.+|+|+++++++..
T Consensus 308 ~~l~~il~~~~~~~~~~~i~~~~~e~l~~~~~~l~~~~~~~~~li~~k~l~k~~~~Y~~~~-~~hv~~a~rl~~~~~~~~ 386 (466)
T PF00136_consen 308 EVLEIILKGKDPEEAVEKIKEVIIEYLKKYIEKLRNGEVPIEDLIISKRLSKDLEEYKKKT-PPHVRAAKRLKKRGPGYK 386 (466)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHTTCSHGGGGHEEEECCSCGGGCSSSH-HHHHHHHHHHHCTTHCTC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHhhhccCCcccccccC-CcHHHHHHHHHhhhcccC
Confidence 999999999997755 3677788888999999999999999994 688998653 459999999999887788
Q ss_pred CCCCCeeeEEEEeCC---CCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCC-hhhh
Q psy5921 1008 PRVSERVPYVIVSGA---PGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTP-VLPW 1073 (1200)
Q Consensus 1008 p~~GerI~YVI~~g~---~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d-~~~w 1073 (1200)
|+.||||+|||++++ .+..+.+++..|.++..+ ++.||++||+++||+||+.|+|++++.+ ...|
T Consensus 387 p~~GdrI~Yvi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~iD~~yYi~~ql~~pl~ril~~~~~~~~~~~ 455 (466)
T PF00136_consen 387 PQKGDRIPYVIVKGPSKKKGPKPSERAEDPEYVKEN-NLPIDYEYYIEKQLLPPLERILEPLGWNDVEKK 455 (466)
T ss_dssp TGTTSEEEEEEBSSSSTTHCEEESCSEETTTHHHHT-TS-BSHHHHHHTTHHHHHHHHHHTCTTTSHHHC
T ss_pred CcCCCEeEEEEEcCccccccccchhhccChhhhhcc-CCCcchHHHHhhccHHHHHHHHHHhcCCcHHHH
Confidence 999999999999883 345667888877765544 5899999999999999999999999887 4444
No 16
>cd05537 POLBc_Pol_II DNA polymerase type-II subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proven by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=100.00 E-value=3.9e-77 Score=690.48 Aligned_cols=348 Identities=24% Similarity=0.396 Sum_probs=304.1
Q ss_pred CCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCC
Q psy5921 658 ESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPS 737 (1200)
Q Consensus 658 ~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPn 737 (1200)
..||+||||++|||++ |++|||+|||||||++|||||+|++...... + .+.....|+
T Consensus 3 ~~Gg~V~eP~~G~y~~-V~vlDF~SLYPSII~~~Ni~p~t~~~~~~~~---~-------------------~~~~~~~~~ 59 (371)
T cd05537 3 SPGGYVMDSKPGLYKN-VLVLDFKSLYPSIIRTFLIDPLGLIEGLKAP---D-------------------PEDLIPGFL 59 (371)
T ss_pred CCCcEEeCCCCCccCc-eEEEEcccccHHHHHHhCCCCceecCCCCCC---C-------------------ccccccCCC
Confidence 3599999999999986 9999999999999999999999986432100 0 023445678
Q ss_pred ceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHH
Q psy5921 738 GVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSV 817 (1200)
Q Consensus 738 G~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sI 817 (1200)
|..|++. +||||++|++|+++|+++|+.|+. .+|+|+|++|||+|||+|+. .+||||.++|++|
T Consensus 60 ~~~f~~~---~Gilp~~l~~l~~~R~~~K~~~~~------------~~q~AlKi~~Ns~YG~~g~~-~~r~~~~~~A~~i 123 (371)
T cd05537 60 GARFSRE---KHILPDLIARLWAARDEAKREKNA------------PLSQAIKIIMNSFYGVLGST-GCRFFDPRLASSI 123 (371)
T ss_pred CCeEecC---CCchHHHHHHHHHHHHHHHHhccH------------HHHHhHhhheecceeecccc-cccccChHHHHHH
Confidence 9999884 599999999999999999987642 37999999999999999998 5799999999999
Q ss_pred HHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCC-CCHHHHHHHHHHHHHHHHccC----------CCceeeeee
Q psy5921 818 VSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPG-KTKQEAFEIGKEIANVVTNNN----------PTPVKLKFE 886 (1200)
Q Consensus 818 T~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~-~~~~ea~~ig~ei~~~Vn~~~----------p~pi~LefE 886 (1200)
|+.||++|+.|++++|+ +|++||||||||+||++++ .+.++++++|++|++.||+.| |.+++||||
T Consensus 124 T~~GR~~l~~~~~~~e~---~g~~ViYgDTDSvfV~~~~~~~~~~~~~~~~~l~~~In~~~~~~~~~~~~~~~~l~Le~E 200 (371)
T cd05537 124 TLRGHEIMKQTRAWIEQ---QGYQVIYGDTDSTFVWLGEELDAAEAQAIGKELASQINQWWAQKLKEEFGLESFLEIEFE 200 (371)
T ss_pred HHHHHHHHHHHHHHHHH---cCCEEEEecCCceEEecCCCCCHHHHHHHHHHHHHHHHHHHHHhhhhhhcCCCCceEEEe
Confidence 99999999999999997 8999999999999999987 688999999999999999864 467999999
Q ss_pred ceechhhcc--------ccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHH
Q psy5921 887 KVYQPCILQ--------TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQ 958 (1200)
Q Consensus 887 kvy~~~lL~--------~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~ 958 (1200)
++|.+++|+ +||||||+.++ . ..+++++||+|+||||||+++|++++++|+.||.++|+ .+|+++.
T Consensus 201 kvy~~~ll~~~~~~~~~~KKrYag~~~~-~--~~~~i~~KGle~vRrD~~~l~k~~~~~vl~~il~~~~~---~~~~~~~ 274 (371)
T cd05537 201 THYSRFFMPTIRGSDEGSKKRYAGLKST-D--GGDELVFKGLETVRSDWTPLARQFQKELYERVFNDEPY---EGFIKET 274 (371)
T ss_pred eeeeeeeeeccccccccccceEEEEEEE-C--CCcEEEeecceeEecchHHHHHHHHHHHHHHHhcCCCH---HHHHHHH
Confidence 999999987 79999999986 2 24799999999999999999999999999999999875 5889999
Q ss_pred HHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCC-CCCCCCCeeeEEEEeCCCCCCcccccCChhh
Q psy5921 959 FSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPR-AEPRVSERVPYVIVSGAPGLPLIKLVKSPYE 1036 (1200)
Q Consensus 959 ~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~-~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e 1036 (1200)
+.+|++|+++ ++|+|+|+| |.+++|+. +.+|||.+|+++++++.. ..+..||||+|||+.+++ .|.+
T Consensus 275 ~~~l~~g~~~-~~lvi~k~L~k~~~~Y~~-~~~phv~aa~~~~~~~~~~~~~~~gd~I~YVi~~~g~---------~~~~ 343 (371)
T cd05537 275 VEELLAGELD-ELLVYRKRLRRPLSEYTK-NVPPHVQAARLADQINRELGRPRQYQWIEYVITVNGP---------EPLE 343 (371)
T ss_pred HHHHHcCCCc-hHhEEehhcCCCHHHcCC-CCCcHHHHHHHHHhcCCccCCCCCCCEEEEEEecCCc---------chHh
Confidence 9999999999 999999999 56899974 447999999999887653 246789999999997533 1332
Q ss_pred hhccCCCCCChHHHhhccchhHHHHHHhhcC
Q psy5921 1037 LLQDSSLRLNSEYYITRVIIPPLERCFLLLG 1067 (1200)
Q Consensus 1037 ~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G 1067 (1200)
..+++||++|||++||+|+++|||++||
T Consensus 344 ---~~~~~iD~~yYi~~qi~p~~~ril~~~g 371 (371)
T cd05537 344 ---YRTSPLDYQHYIDKQLKPIADSILPFLG 371 (371)
T ss_pred ---hcCCCCCHHHHHHhccHHHHHHHHHhcC
Confidence 2358999999999999999999999987
No 17
>cd05530 POLBc_B1 DNA polymerase type-B B1 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=100.00 E-value=2e-73 Score=657.90 Aligned_cols=350 Identities=22% Similarity=0.371 Sum_probs=296.7
Q ss_pred CCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeC
Q psy5921 656 APESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTIS 735 (1200)
Q Consensus 656 ~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~s 735 (1200)
..+.||+||+|++|||++ |++|||+|||||||++|||||||++...+. +.....
T Consensus 11 ~~y~Gg~V~~P~~G~y~~-V~~lDF~SLYPSIi~~~Ni~~~T~~~~~~~-------------------------~~~~~~ 64 (372)
T cd05530 11 KKYRGAIVLEPPPGIFFN-VVVLDFASLYPSIIKVWNLSYETVNCPHCE-------------------------CKTNEV 64 (372)
T ss_pred CCCCCCEeecCCCCcccc-EEEEEcccccHHHHHHhCCChhhcccCccc-------------------------ccceec
Confidence 457899999999999997 999999999999999999999999853110 001123
Q ss_pred C-CceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhcc-CCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHH
Q psy5921 736 P-SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK-SNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEV 813 (1200)
Q Consensus 736 P-nG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~-~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~ei 813 (1200)
| .+..|++. ++||+|++|+.|++.|+++|+.|++.+ .|+.++++||++|+|+|++|||+|||+|+. ++||||.++
T Consensus 65 p~~~~~~~~~--~~Gilp~il~~L~~~R~~~~k~~~k~~~~d~~~~~~ld~~Q~alKi~~NS~YG~~g~~-~~~~~~~~~ 141 (372)
T cd05530 65 PEVGHWVCKK--RPGITSQIIGLLRDLRVKIYKKKAKDKSLDEEMRQWYDVVQSAMKVFINASYGVFGAE-NFPLYCPPV 141 (372)
T ss_pred CCCCceEEec--CCCccHHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHHHHHHHHHhccccccccc-cCCCCcHHH
Confidence 3 45566664 899999999999999999766554433 388999999999999999999999999997 579999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhh
Q psy5921 814 GDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCI 893 (1200)
Q Consensus 814 A~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~l 893 (1200)
|++||+.||++|++|++++++ +|++||||||||+||+.++. +. .++|+++|++.+ +++||||++|++++
T Consensus 142 A~~it~~GR~~l~~~~~~~~~---~g~~VIYGDTDSvfv~~~~~--~~----~~~i~~~i~~~~--~i~le~E~~y~~~l 210 (372)
T cd05530 142 AESTTALGRYIITSTIKKARE---LGLKVLYGDTDSLFLWNPPQ--EQ----LEDLVEWVEKEL--GLDLELDKEYRYVV 210 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---CCcEEEEEeccceEEecCCh--hH----HHHHHHHHhhcc--CceEEEEEEEeeee
Confidence 999999999999999999986 89999999999999997642 32 356777888765 69999999999877
Q ss_pred cc-ccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHH-------HHHHHHHHHHHHHHcC
Q psy5921 894 LQ-TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLS-------VVKEYVEKQFSKIISG 965 (1200)
Q Consensus 894 L~-~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~-------~v~~yl~~~~~kl~~g 965 (1200)
|. +||||||+..+ +++++||+|++|||||+++|+++.++|+.||..++++ .+++++++.+.+|++|
T Consensus 211 l~~~KKrY~g~~~~------gki~~KGie~~RrD~~~~~k~~~~~vl~~ll~~~~~~~~~~~~~~i~~~~~~~~~~l~~g 284 (372)
T cd05530 211 FSGLKKNYLGVTKD------GSVDIKGLLGKKRNTPEFVKELFYEVIEILSAVNSPEDFEKAREKIRDIVKGVYKRLKKK 284 (372)
T ss_pred eccccccEEEEecC------CcEEEEeEEEEeCCchHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 75 79999998532 6899999999999999999999999999999977643 3778899999999999
Q ss_pred CCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCC
Q psy5921 966 RISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLR 1044 (1200)
Q Consensus 966 ~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~ 1044 (1200)
++|+++|+|+++| |.+++|+.. .+||+.+|+++.++ |..+++|++|+|||++|.++. .|.+... ...
T Consensus 285 ~~~~~~lvi~k~L~K~~~~Y~~~-~~phv~aa~~~~~~--g~~~~~G~~I~YVi~~~~~~~-------~p~~~~~--~~~ 352 (372)
T cd05530 285 EYTLDQLAFKVMLSKPPEEYTKN-TPQHVKAARQLEKY--GRNVEAGDIISYVKVKGKEGV-------KPVQLAR--LDE 352 (372)
T ss_pred CCCHHHheeehhccCCHHHhcCC-CCHHHHHHHHHHhc--CCCCCCCCEEEEEEEeCCCCC-------chhhhcc--CCC
Confidence 9999999999999 568899854 46999999888765 578899999999999887654 3555433 247
Q ss_pred CChHHHhhccchhHHHHHHh
Q psy5921 1045 LNSEYYITRVIIPPLERCFL 1064 (1200)
Q Consensus 1045 iD~~YYi~kqi~ppl~Rll~ 1064 (1200)
||++|||+ +|.+++++|++
T Consensus 353 iD~~yYi~-~l~~a~~~i~~ 371 (372)
T cd05530 353 VDVEKYVE-IMRSTLEQILG 371 (372)
T ss_pred CCHHHHHH-HHHHHHHHHhc
Confidence 99999997 59999999986
No 18
>cd00145 POLBc DNA polymerase type-B family catalytic domain. DNA-directed DNA polymerases elongate DNA by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA. DNA-directed DNA polymerases are multifunctional with both synthetic (polymerase) and degradative modes (exonucleases) and play roles in the processes of DNA replication, repair, and recombination. DNA-dependent DNA polymerases can be classified in six main groups based upon their phylogenetic relationships with E. coli polymerase I (class A), E. coli polymerase II (class B), E. coli polymerase III (class C), euryarchaeota polymerase II (class D), human polymerase beta (class x), E. coli UmuC/DinB, and eukaryotic RAP 30/Xeroderma pigmentosum variant (class Y). Family B DNA polymerases include E. coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative DNA polymerases (alpha, delta, epsilon, and zeta), and eukaryotic viral and plasmid-borne enzymes. DNA polymerase is
Probab=100.00 E-value=1.8e-73 Score=651.98 Aligned_cols=321 Identities=39% Similarity=0.598 Sum_probs=283.4
Q ss_pred CCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCC
Q psy5921 657 PESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP 736 (1200)
Q Consensus 657 ~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sP 736 (1200)
.+.||+|++|++|+|+ ||++|||+|||||||++|||||||+++..+.... + .+
T Consensus 2 ~y~Gg~V~~P~~G~~~-~V~~lDf~SLYPSIi~~~Ni~~~T~~~~~~~~~~----------------------~----~~ 54 (323)
T cd00145 2 PYEGGYVFDPIPGLYE-NVIVLDFKSLYPSIIITYNLSPTTLVGNGEIAAP----------------------E----DY 54 (323)
T ss_pred CCCCcEEecCcccccC-ceEEeecCCccHHHHHHhCCCcccccccccccCc----------------------c----cc
Confidence 4679999999999997 6999999999999999999999999864221100 0 01
Q ss_pred CceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHH
Q psy5921 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDS 816 (1200)
Q Consensus 737 nG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~s 816 (1200)
.|..|+...+++||+|.+|++|++.|+++|+.||+.++++.++++||.||+|+|++|||+|||+|+++ +||||.++|++
T Consensus 55 ~~~~~~~~~~~~Gilp~iL~~Ll~~R~~~K~~mk~~~~~~~~~~~~d~~Q~AlKi~~NS~YG~~G~~~-~r~~~~~~A~~ 133 (323)
T cd00145 55 IGVGFRSPKDRKGLLPRILEELLNFRDEAKKRMKAAKLAPEERVLYDNRQQALKVLANSFYGYLGAKF-FRFYDPEVAAS 133 (323)
T ss_pred cCccccccCCCCCCCHHHHHHHHHHHHHHHHHHhhCcCCHHHHHHHHHHhhhhheeeecceeeccccc-ccCCChHHHHH
Confidence 14456666679999999999999999999999999887899999999999999999999999999986 59999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCC-CCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhcc
Q psy5921 817 VVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPG-KTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQ 895 (1200)
Q Consensus 817 IT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~-~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~ 895 (1200)
||+.||++|++|++++++ +|++|||||||||||.+++ .+.++++++|+++++.| .++.|++||||++|.+++++
T Consensus 134 IT~~GR~~l~~~~~~ie~---~g~~VIYGDTDSifv~~~~~~~~~~~~~~~~~~~~~i--~~~~~i~le~E~vy~~~ll~ 208 (323)
T cd00145 134 ITSFGREIIQDTIALVEE---HGARVIYGDTDSIFVSLPKMGTKEDAIKEGREILQEL--ADEHLLELEFEKVYLPFFLG 208 (323)
T ss_pred HHHHHHHHHHHHHHHHHH---cCCEEEEECCCceEEEeCCCCCHHHHHHHHHHHHHHh--CCCCCeEEEEchhhHHHHHh
Confidence 999999999999999997 8999999999999999998 78999999999999999 45789999999999999999
Q ss_pred ccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCChhhhhHh
Q psy5921 896 TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFA 975 (1200)
Q Consensus 896 ~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~ 975 (1200)
+||||||+.+++ ++..+++++||+|+||||||+++|++++++|+.||.+ +.+.+++++.+.+|
T Consensus 209 ~KKrYag~~~~~-~~~~~~~~~KG~e~vRrD~~~~~k~~~~~vl~~ll~~---~~~~~~v~~~~~~l------------- 271 (323)
T cd00145 209 KKKRYAGLDIWK-GQDEGKIDIKGLETRRRDSPPLVKKFQKEVLELILEE---ERKVEAVKEYIDEL------------- 271 (323)
T ss_pred hhhhEEEEEEEc-CCCCceEEEEcceEEecCcHHHHHHHHHHHHHHHHcC---CchHHHHHHHHHHh-------------
Confidence 999999999976 5556899999999999999999999999999999985 22344444444444
Q ss_pred hcccCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCCCChHHHhhccc
Q psy5921 976 KEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVI 1055 (1200)
Q Consensus 976 K~lr~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi 1055 (1200)
|||+|||++++++.++.+||..|.++++ .++++|++||+++|+
T Consensus 272 ------------------------------------~~i~yvi~~~~~~~~~~~ra~~~~~~~~-~~~~iD~~yY~~~~~ 314 (323)
T cd00145 272 ------------------------------------DKVKYVVTRGGKGVPDYERADPPLEDLD-KRHRIDYEYYLERLL 314 (323)
T ss_pred ------------------------------------ccccEEEEcCCCCCCcccccCChhhhcc-cCCCCChHHHHHhcc
Confidence 8999999999988888899987776654 478999999999999
Q ss_pred hhHHHHHHh
Q psy5921 1056 IPPLERCFL 1064 (1200)
Q Consensus 1056 ~ppl~Rll~ 1064 (1200)
+||+.|||+
T Consensus 315 ~~~~~ri~~ 323 (323)
T cd00145 315 QPPLERIFE 323 (323)
T ss_pred HhHHHHhcC
Confidence 999999984
No 19
>smart00486 POLBc DNA polymerase type-B family. DNA polymerase alpha, delta, epsilon and zeta chain (eukaryota), DNA polymerases in archaea, DNA polymerase II in e. coli, mitochondrial DNA polymerases and and virus DNA polymerases
Probab=100.00 E-value=2.8e-69 Score=644.63 Aligned_cols=455 Identities=32% Similarity=0.491 Sum_probs=379.1
Q ss_pred CcceEEEEEEEeccCCCCCCCCC--CCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPA--YDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~--~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~ 459 (1200)
|++++++|||||.+..+.+|++. .|+|++|++..............++.+.+.... .+..+..+.+|++||.+
T Consensus 1 ~~~~~~~~DIEt~~~~~~~p~~~~~~~~ii~i~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~E~~lL~~ 75 (471)
T smart00486 1 PPLKILSFDIETYTDGGLFPDPLIFEDEIIQISLVINDGDKKGPEERICFTLGTCKEI-----DGVEVYEFNNEKELLKA 75 (471)
T ss_pred CCceEEEEEEEECCCCCCCCCCCCCCCeEEEEEEEEEECCCCCCceeEEEEecCcCCC-----CCCeEEecCCHHHHHHH
Confidence 57899999999999877789998 799999999887654322223334555544322 24678889999999999
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCc------cccccceeeecceEEeehHH
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSR------DEVKNTQLQMPGRIVINLWR 533 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~------~~~~~~~~~i~GRlvlDl~r 533 (1200)
|+++|+..|||||+|||+.+|||+||.+|+..++++.+..+||........... .......+.+.||+++|+|.
T Consensus 76 f~~~i~~~dpdii~g~N~~~FD~~~i~~R~~~~~~~~~~~i~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~Dl~~ 155 (471)
T smart00486 76 FLEFIKKYDPDIIYGHNISNFDLPYIISRLEKLKIKPLSFIGRLKNIIDIKRKKPLFGSKSFGKTIKVKIKGRLVIDLYN 155 (471)
T ss_pred HHHHHHHhCCCEEEeecCCCCCHHHHHHHHHHcCCCCHHHcCcCCCCCCcccccCccccccccccceeEeccEEEEEhHH
Confidence 999999999999999999999999999999999998876688876431110000 01124467899999999999
Q ss_pred HHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhc
Q psy5921 534 LLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 613 (1200)
Q Consensus 534 ~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~G 613 (1200)
.+++.+++.+|+|++||.++|+++++++++.++.++|+.+ ...+..+++||+.|+.++++|+.++++++...++|+++|
T Consensus 156 ~~~~~~kl~~~~L~~va~~~l~~~k~d~~~~~i~~~~~~~-~~~~~~~~~Y~~~D~~l~~~l~~~l~~~~~~~~~s~~~~ 234 (471)
T smart00486 156 LYKNKLKLPSYKLDTVAEYLLGKEKDDLPYKDIPELYNLN-YKLRDELLEYCIQDAVLTLKLFNKLNVIPLIIELARIAG 234 (471)
T ss_pred HHHHHhCcccCCHHHHHHHHhCCCCCCCCHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHC
Confidence 9999999999999999999999999999999999999875 245789999999999999999999999999999999999
Q ss_pred ccchhhccCcchhhhhhhhhhccccccccccCCChhhhc------ccCCCCCCCeeeccCCCcccCCeEEeecccccHHH
Q psy5921 614 IQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRA------HMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSV 687 (1200)
Q Consensus 614 i~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~~------~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSI 687 (1200)
+++.+++.+|++.+||+++++.++..|+++|++...... .....+.||+|++|.+|+|++||+++||+||||||
T Consensus 235 ~~~~~~~~~g~~~~v~~~l~~~~~~~~~~~P~~~~~~~~~~~~~~~~~~~y~gg~v~~p~~g~~~~~v~~lDf~SlYPsi 314 (471)
T smart00486 235 IPQRRTLYYGSQIRVESLLLREAKKNNYILPSKSLIDFKGSEPELKKKAKYPGGKVLEPKKGFYDNPVLVLDFNSLYPSI 314 (471)
T ss_pred cCHHHHHhcCcHHHHHHHHHHHHhhCCEEeccchhcccccccccccccccccccEEecCCCCcccCceEEeehhhccHHH
Confidence 999999999999999999999999999999887653321 23467889999999999999999999999999999
Q ss_pred HHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHH
Q psy5921 688 IIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQ 767 (1200)
Q Consensus 688 IiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk 767 (1200)
|++|||||+|+++.....+.. ... . ..........+++..|+++++++|+||++|++|++.|.++|+
T Consensus 315 i~~~nl~~~t~~~~~~~~~~~----------~~~--~-~~~~~~~~~~~~~~~~~~~~~~~gil~~~l~~l~~~R~~~K~ 381 (471)
T smart00486 315 IIAHNLCYSTLVGRGENSGEL----------FLD--V-EDLLTIKYEKPEGYHFVKKNIRKGILPKLLKKLLDKRKEIKK 381 (471)
T ss_pred HHHhCCCCccccccccccccc----------CCC--h-hhcceeeecCCCcceeecCCCCCeehHHHHHHHHHHHHHHHH
Confidence 999999999998753311110 000 0 011112445678889999888899999999999999999999
Q ss_pred HhhhccC-CHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCc-CcceEEec
Q psy5921 768 SMKEYKS-NAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSK-WQCRVVYG 845 (1200)
Q Consensus 768 ~mK~~~~-d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~-~g~~VIYG 845 (1200)
.|++.++ +..++.++|.+|+|+|++|||+|||+|+.. +||||.++|++||+.||.+|+.+++++++... +|++||||
T Consensus 382 ~~~~~~~~~~~~~~~~d~~q~a~K~~~Ns~yG~~g~~~-~~~~~~~~a~~iT~~gr~~l~~~~~~i~~~~~~~~~~viYg 460 (471)
T smart00486 382 LMKKEKDESEELKKLLDSRQLALKLTANSVYGYLGFTN-SRLYCKPLAASVTALGREILEKTKELIEKNGYPPGFKVIYG 460 (471)
T ss_pred HHhhCCCCcHHHHHHHHHHHHHHHhhhccccccccccc-ccCccHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEe
Confidence 9998753 345788999999999999999999999985 59999999999999999999999999997211 24999999
Q ss_pred cCCceeEecCC
Q psy5921 846 DTDSMFVLAPG 856 (1200)
Q Consensus 846 DTDSvfV~~~~ 856 (1200)
|||||||..++
T Consensus 461 DTDSi~v~~~~ 471 (471)
T smart00486 461 DTDSIFVTKPG 471 (471)
T ss_pred cCceEEEecCC
Confidence 99999998763
No 20
>cd05538 POLBc_Pol_II_B DNA polymerase type-II B subfamily catalytic domain. Bacteria contain five DNA polymerases (I, II, III, IV and V). DNA polymerase II (Pol II) is a prototype for the B-family of polymerases. The role of Pol II in a variety of cellular activities, such as repair of DNA damaged by UV irradiation or oxidation has been proved by genetic studies. DNA polymerase III is the main enzyme responsible for replication of the bacterial chromosome; however, In vivo studies have also shown that Pol II is able to participate in chromosomal DNA replication with larger role in lagging-strand replication.
Probab=100.00 E-value=9.5e-71 Score=632.14 Aligned_cols=337 Identities=21% Similarity=0.297 Sum_probs=290.4
Q ss_pred CCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCC
Q psy5921 657 PESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP 736 (1200)
Q Consensus 657 ~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sP 736 (1200)
.+.||+|++|++|+|++ |++|||+|||||||++|||||+.
T Consensus 2 ~~~GG~v~~p~~Gl~~~-V~~lDf~SLYPSIi~~~ni~p~~--------------------------------------- 41 (347)
T cd05538 2 KFEGGYAYVFITGVLGP-IVHADVASLYPSIMLAYRICPAR--------------------------------------- 41 (347)
T ss_pred CcCCceEcccCCcCcCc-eEEEEcccchHHHHHHhCCCCCC---------------------------------------
Confidence 35699999999999986 99999999999999999999851
Q ss_pred CceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHH
Q psy5921 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDS 816 (1200)
Q Consensus 737 nG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~s 816 (1200)
.+.||+|.+|++|++.|.++|+.||+.+ ++.++.+||.+|+|+|+++||+|||+|+. ++||||.++|++
T Consensus 42 ---------~~~Gilp~il~~Ll~~R~~~K~~~k~~~-~~~~~~~~d~~Q~AlKi~~NS~YG~lG~~-~~r~~~~~~A~~ 110 (347)
T cd05538 42 ---------DSLGIFLALLKYLVELRLAAKESARAAA-RPAERDAFKAKQAAFKVLINSFYGYLGTG-LHAFSDPEAAAE 110 (347)
T ss_pred ---------CCCcccHHHHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHhhhhhhchhhhcCC-CCCCCCHHHHHH
Confidence 1579999999999999999999999875 68889999999999999999999999997 579999999999
Q ss_pred HHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCC-C-HHHHHHHHHHHHHHHHccCCCceeeeeeceechhhc
Q psy5921 817 VVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGK-T-KQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCIL 894 (1200)
Q Consensus 817 IT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~-~-~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL 894 (1200)
||+.||++|+++++++++ +|++|||||||||||.+++. + .++ +++++++|++.+|.+++||||++|+++++
T Consensus 111 iT~~GR~~L~~~~~~~e~---~g~~VIygDTDSi~v~~~~~~~~~~~----~~~~~~~i~~~~~~~i~le~e~~y~~~l~ 183 (347)
T cd05538 111 VTRLGRELLKLMIRWLRR---RGATPVEVDTDGIYFIPPNGVDTEDE----EEELVRELSSTLPKGITVEFDGRYRAMFS 183 (347)
T ss_pred HHHHHHHHHHHHHHHHHH---CCCEEEEEcCCeeEEEeCCCCChHHH----HHHHHHHHHHhCCCCeEEEEhHHHHHHHh
Confidence 999999999999999996 89999999999999998643 2 233 36788888888999999999999999999
Q ss_pred cccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCChhhhhH
Q psy5921 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTF 974 (1200)
Q Consensus 895 ~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii 974 (1200)
++||||||+..+ +++++||+|+||||||+++|++++++|+.||+ ++.+++++++++.+.+|++|++|+++|+|
T Consensus 184 ~~KKrYa~~~~~------gki~~KG~e~vRrD~~~~~k~~~~~vl~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~l~i 256 (347)
T cd05538 184 YKIKNYALLDYD------GKLIVKGSAFRSRGIEPFLREFLREAVRLLLQ-GDGAGVHDLYEDYLRRLRSHELPISDLAR 256 (347)
T ss_pred hcCceEEEEecC------CcEEEECCCcccCCchHHHHHHHHHHHHHHHc-CChHHHHHHHHHHHHHHHcCCCCHHHEEE
Confidence 999999997542 58999999999999999999999999999995 57788999999999999999999999999
Q ss_pred hhcc-cCCCCCCCCC--CchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCCCChHHHh
Q psy5921 975 AKEY-RGQAGYKPGA--CVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYI 1051 (1200)
Q Consensus 975 ~K~l-r~~~~Y~~~~--~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi 1051 (1200)
+|++ |.+++|.... ..+|..+|.+++. ..+..+++||+|+|||++++++.++.+|++.+. .++.....+|++||+
T Consensus 257 ~k~l~k~~~~Y~~~~~~~~~~~~~a~~~a~-~~g~~~~~G~~I~Yvi~~~~~g~~~~~ra~~~~-~~~~~~~~~d~~yY~ 334 (347)
T cd05538 257 TETLKESPEEYLQKVRAGKRNPAAAYEIAL-ARPREWRAGDRVTYYVSGTGKGVSVYENCRLVA-DYDPAHPDENTGFYA 334 (347)
T ss_pred EeecCCCHHHHhhhhhcccCChhHHHHHHH-hcCCCCCCCCEEEEEEEeCCCCCCHHHhhccHH-HhCCCccccCHHHHH
Confidence 9999 5688996431 1133233333322 246789999999999999988899999988554 445446789999999
Q ss_pred hccchhHHHH
Q psy5921 1052 TRVIIPPLER 1061 (1200)
Q Consensus 1052 ~kqi~ppl~R 1061 (1200)
++ |..-..|
T Consensus 335 ~~-l~~~~~~ 343 (347)
T cd05538 335 ER-LLQLAAR 343 (347)
T ss_pred HH-HHHHHHh
Confidence 86 4444443
No 21
>cd05531 POLBc_B2 DNA polymerase type-B B2 subfamily catalytic domain. Archaeal proteins that are involved in DNA replication are similar to those from eukaryotes. Some archaeal members also possess multiple family B DNA polymerases (B1, B2 and B3). So far there is no specific function(s) has been assigned for different members of the archaea type B DNA polymerases. Phylogenetic analyses of eubacterial, archaeal, and eukaryotic family B DNA polymerases are support independent gene duplications during the evolution of archaeal and eukaryotic family B DNA polymerases.
Probab=100.00 E-value=1.3e-68 Score=616.12 Aligned_cols=335 Identities=25% Similarity=0.400 Sum_probs=282.8
Q ss_pred CCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeC
Q psy5921 656 APESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTIS 735 (1200)
Q Consensus 656 ~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~s 735 (1200)
..+.||+|++|++|||++ |++|||+|||||||++|||||+|+++..+.. ....
T Consensus 3 ~~~~Gg~V~~p~~G~~~~-V~~lDF~SLYPSii~~~ni~~~ti~~~~~~~--------------------------~~~~ 55 (352)
T cd05531 3 LADRGGLVFQPEPGLYEN-VAQIDFSSMYPSIIVKYNISPETINCRCCEC--------------------------RDHV 55 (352)
T ss_pred cCCCCcEEecCCCCccCc-eEEEEccccchHHHHHhCCChhhccccCccc--------------------------ccCC
Confidence 356799999999999986 9999999999999999999999997532100 0011
Q ss_pred CCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHH
Q psy5921 736 PSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGD 815 (1200)
Q Consensus 736 PnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~ 815 (1200)
+.|..|++. ++||+|.+|++|+++|.++|+.||+.++ +|.+|+|+|++|||+|||+|+. ++||+|.++|+
T Consensus 56 ~~~~~~~~~--~~gilp~~l~~l~~~R~~~K~~~k~~~~-------~d~~q~AlKi~~NS~YGylG~~-~~~f~~~~~A~ 125 (352)
T cd05531 56 YLGHRICLK--RRGFLPEVLEPLLERRLEYKRLKKEEDP-------YAGRQKALKWILVTSFGYLGYK-NAKFGRIEVHE 125 (352)
T ss_pred CCCceEecC--CCCchHHHHHHHHHHHHHHHHHhhcCCC-------chHHHhhheeeeeccccccccc-ccccCChHHHH
Confidence 456677764 8999999999999999999999997642 2999999999999999999998 46999999999
Q ss_pred HHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhcc
Q psy5921 816 SVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQ 895 (1200)
Q Consensus 816 sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~ 895 (1200)
+||+.||++|++|++++|+ +|++||||||||+||..++ +. .+++++|++.+ +++|++|++|.+++|+
T Consensus 126 ~vT~~GR~~L~~~~~~~e~---~g~~VIygDTDSvfv~~~~----~~----~~~~~~i~~~~--~i~l~le~~y~~~~~~ 192 (352)
T cd05531 126 AITAYGRKILLRAKEIAEE---MGFRVLHGIVDSLWIQGRG----DI----EELAREIEERT--GIPLKLEGHYDWIVFL 192 (352)
T ss_pred HHHHHHHHHHHHHHHHHHH---cCCEEEEEccccceeecCc----hH----HHHHHHHHHhc--CCceEEEEEEEEEEee
Confidence 9999999999999999997 8999999999999999742 22 35666677664 5889999999998754
Q ss_pred -------ccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHH-------HHHHHHHHHHHH
Q psy5921 896 -------TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLS-------VVKEYVEKQFSK 961 (1200)
Q Consensus 896 -------~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~-------~v~~yl~~~~~k 961 (1200)
+||||+|+..+ +++++||+|+||||||+++|++++++|+.||.++|++ ++.+++++...+
T Consensus 193 ~~~~~~~~kKrY~g~~~~------g~i~~KG~e~vRrD~~~~~k~~~~~vl~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (352)
T cd05531 193 PERDGLGAPNRYFGRLSD------GEMKVRGIELRRRDTPPFVKKFQEEALDILASAKTPEELLKLREEALDLFRRYLQR 266 (352)
T ss_pred ccccccCcceeEEEecCC------CcEEEEeeEEEeCCchHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 68999998752 6899999999999999999999999999999999975 455678888889
Q ss_pred HHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhcc
Q psy5921 962 IISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQD 1040 (1200)
Q Consensus 962 l~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~ 1040 (1200)
|.+|+ +++|+|+|++ |.+++|+.. .|| +|++++++ +..+++||+|+|||+.++.+.+. . .
T Consensus 267 l~~~~--~~~lvi~k~l~k~~~~Y~~~--~~~--~a~~l~~~--g~~~~~G~~I~Yvi~~~~~~~~~----------~-~ 327 (352)
T cd05531 267 LREGD--LEDLIIEKKISKRSSEYKVL--AST--ALKALRAK--GVSVVPGMKIEYIVRDGKRPVPD----------L-G 327 (352)
T ss_pred HhcCC--hHHEEEEEEecCCHHHcCCc--hHH--HHHHHHhC--CCCCCCCCEEEEEEEECCCCCcc----------c-c
Confidence 99987 8999999999 567889864 244 78888776 56799999999999988765432 2 2
Q ss_pred CCCCCChHHHhhccchhHHHHHHhhc
Q psy5921 1041 SSLRLNSEYYITRVIIPPLERCFLLL 1066 (1200)
Q Consensus 1041 ~~l~iD~~YYi~kqi~ppl~Rll~~~ 1066 (1200)
+...+|++||++ ||.|++++|+.++
T Consensus 328 ~~~~~D~~yYi~-~l~~~~~~il~~~ 352 (352)
T cd05531 328 NDEGYDTKYYRE-LLERAAEELLFPL 352 (352)
T ss_pred ccCCCCHHHHHH-HHHHHHHHhccCC
Confidence 467899999996 8999999998753
No 22
>PHA03334 putative DNA polymerase catalytic subunit; Provisional
Probab=100.00 E-value=1.8e-65 Score=629.57 Aligned_cols=543 Identities=18% Similarity=0.166 Sum_probs=386.4
Q ss_pred CcEEEEEEEecCCCCCCCc--eEEEEEecCCCC--CCc--CC----CCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEec
Q psy5921 406 DEVKAIFYYLYTCPPEEDR--KVGIILIGQESE--LPE--VR----TKPIQMHFVSNEKELFSIFIENVRQWDPDILIGY 475 (1200)
Q Consensus 406 DeIiaIs~~v~~d~~~d~~--~~gv~~v~~~~~--~p~--~~----~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGy 475 (1200)
.||.+||+.+.+.-+.... .+-|+-...... .|. +. ..++++..|.+|.+||-+|+..|+++ .||+.-|
T Consensus 274 ~eitsislv~~~~~~~~~~~~~r~v~yn~~~~~~~~p~~~~~~~~~~t~~~~~~c~~e~~~l~~fl~~~~~~-v~vlyv~ 352 (1545)
T PHA03334 274 GEITSISLVYCTTKPKGPKKKKRYVFYNAALVEGPEPLHLDSSYDVVTRIEFVACADELEMLLAFLNRLRKS-VNVLYVY 352 (1545)
T ss_pred cceeEEEEEEeccccccccccceEEEEchhhcCCCCcccccccccceeeeEEEEeccHHHHHHHHHHHHHhh-ccEEEEe
Confidence 5899999877554432211 122332211111 111 11 12678999999999999999999984 5999999
Q ss_pred CcccccHHHHHHHHHHhCCCCc-c------------cccccccccccc--cC----------------------------
Q psy5921 476 EIETLSWGYLLERGYVLGLNLN-Q------------ELSRITEVEKRN--SS---------------------------- 512 (1200)
Q Consensus 476 Ni~~FDlpYL~~Ra~~lgi~l~-~------------~lgR~~~~~~~~--~s---------------------------- 512 (1200)
|.+ ||+.+|.+|...+..... . .+++.|...+.. |+
T Consensus 353 n~~-fdv~vi~~rl~~y~~~~~~~~~~~~l~~~~~~~~s~~~~~~~~~~~f~~~~~~s~y~~ll~~~~~~~~~~~~~~~~ 431 (1545)
T PHA03334 353 NAE-FDVQVIQSRLNYYAFKQRPHPLTKALMEAWEAFLSKDPQLVPAQLLFGSDILNSNYLELLDVIESHKAQFKATCRK 431 (1545)
T ss_pred ccc-ccHHHHHHHHHHhhccCCCCcHHHHHHHHHHHHhccCCccCCceeEehhhHHHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 986 999999999987643221 1 133332211000 00
Q ss_pred --c-----c-----------------ccccceeeecceEEeehHHHHHh---hhcCCCCCHHHHHHHHcCCCc-------
Q psy5921 513 --R-----D-----------------EVKNTQLQMPGRIVINLWRLLRH---EVNLQSYTFENIMYHVLHERI------- 558 (1200)
Q Consensus 513 --~-----~-----------------~~~~~~~~i~GRlvlDl~r~~r~---el~L~SYsLe~Va~~vLg~rk------- 558 (1200)
. + ..-++.+.+.||+++|+|+++++ +++|.||+|++||+++||++|
T Consensus 432 ~~~~~~~~~~~~~~r~~v~~f~~n~~~~~~~kv~~~GrviiDMy~Vc~~K~~~~kL~sYkLNTVA~~~LgeqKp~k~~~k 511 (1545)
T PHA03334 432 AAARKEEIGSYMKTRDTVQDFNDNDKKYLNSTSHGFGAHIIDLMRVCNTKSIKAKCSSRKLDTVARLIISKSKPHKNPPK 511 (1545)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccccccccceeeeccEEEEehHHHHhhcccccCccCCcHHHHHHHHHhcccccccccc
Confidence 0 0 00145789999999999999998 589999999999999999888
Q ss_pred ----CCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCc--------chh
Q psy5921 559 ----PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRG--------SQF 626 (1200)
Q Consensus 559 ----~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rG--------sq~ 626 (1200)
+++++.+|.++|+.+. ..|.+++.||++|+.++++|+.+|..+....+++|++|.+..-.++|| ||.
T Consensus 512 ~~K~eDV~YkeI~~lf~~g~-e~RaRla~YCLkDA~LvlrLlkkl~~h~e~~eraRvT~~id~~~l~RG~v~fdG~vQQI 590 (1545)
T PHA03334 512 IGKMDDVKYTEMDGMFTAGG-AALARYLIYNLVDSELLIRIAKNLDPVIEFLNRLRATYNIDYVAHGRGVMNFCGFVQST 590 (1545)
T ss_pred cCcccCCCHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeecccceecccCccchh
Confidence 8999999999998874 789999999999999999999999999999999999997765545555 999
Q ss_pred hhhhhhhhccc-ccccccc---------CCChhh-hcccCCCCCCCeeeccCCCc-----ccCCeEEeecccccHHHHHH
Q psy5921 627 RVESIMLRLSR-LNNFVAV---------SPSIKQ-RAHMRAPESLPLILEPESRL-----YTDPIIVLDFQSLYPSVIIA 690 (1200)
Q Consensus 627 rvEslLlr~a~-~~~~I~p---------~ps~~~-~~~~~~~~~GglVleP~~G~-----Y~~pV~vLDF~SLYPSIIia 690 (1200)
||-+.+|++|+ +.|++++ .|.... ..+++..|.||+|++|++|| |.+||++|||+|||||||++
T Consensus 591 KV~s~lL~kA~~~~~~~ia~~~i~~s~ilP~~~~~~~~~~~~YeGAtVLEP~~Gf~~~~~Y~~PVaVLDFASLYPSIIia 670 (1545)
T PHA03334 591 KSVEVPLLKARLRIGIFVATGRIAESLCMPEKYARDCRQKIKLKGGYVFAPLTGLTFAGPYQGTELTLDFASLYPSNMCD 670 (1545)
T ss_pred hHHHHHHHHHHHhcCcccccccccccccCCcccccccccccccCCeEeecCCCCccccccCCCcEEEEEccccchHHHHH
Confidence 99888887777 6777653 133211 11234567899999999999 67899999999999999999
Q ss_pred cCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhh
Q psy5921 691 YNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMK 770 (1200)
Q Consensus 691 yNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK 770 (1200)
|||||||++..... ....+. .|....+.+.+. .....-..+.-.+..+++.....+++|.+|++||+.|+++|+.||
T Consensus 671 hNLCYeTLV~~~c~-~~~~~~-~~~d~~k~p~gy-~~~~~vy~V~~~~~~~P~~~rf~SiLp~LL~eLL~~RK~~Kk~MK 747 (1545)
T PHA03334 671 ANISPEAIVDPDCT-ARVRGW-VVFDWKKIDRGF-GKATLMYTILRTKPEEPSWRRFTTYTTSSLNHYLSMRTEYKGAMK 747 (1545)
T ss_pred hCCCcccccCccch-hhhccc-cccccccCCccc-CccccceeeccccCcCCCcceecchHHHHHHHHHHHHHHHHHHHh
Confidence 99999999854210 000000 000000011100 000000000001111223344568999999999999999999999
Q ss_pred hccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCce
Q psy5921 771 EYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSM 850 (1200)
Q Consensus 771 ~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSv 850 (1200)
+.+ |+.++.+||.||+|+|++|||+|||+|. ++|++||+.||++|+.+++++++ +.|++|||||||||
T Consensus 748 k~k-Dp~er~iLD~rQlALKVtANSvYGytG~---------~cA~lVTa~GRemI~~t~~~IE~--e~G~~VIYGDTDSV 815 (1545)
T PHA03334 748 QAK-DPKLKSYHNQLQNEMKICANSHYGVAPH---------ACQHLITTLGRHKIKLVEEFIKK--EPGMTVNYGDTDSV 815 (1545)
T ss_pred hCC-CHHHHHHHHHHHHHHHHHHHhhcCcchh---------HHHHHHHHHHHHHHHHHHHHHHH--hCCCEEEEEeCCce
Confidence 876 7889999999999999999999999874 26889999999999999999993 38999999999999
Q ss_pred eEecCCCCH-----------HHHHHHHHHHHH--------HHHc---------------------------c---C----
Q psy5921 851 FVLAPGKTK-----------QEAFEIGKEIAN--------VVTN---------------------------N---N---- 877 (1200)
Q Consensus 851 fV~~~~~~~-----------~ea~~ig~ei~~--------~Vn~---------------------------~---~---- 877 (1200)
||.++..+. +++...+.+..+ .|++ + +
T Consensus 816 fV~~p~~d~~~~~~d~v~~~~~~~~~~~~~~~~~s~~~~~~~~~~k~~~~~~~v~~~L~~l~~~l~d~m~~~l~~~~~~~ 895 (1545)
T PHA03334 816 MFQLPPDDAETYLEDTVTLEDEERAPLEYTLEEWSAEAVNHVTKAKTKREGETVQSILSDLNTVLYDDMIERLRYVDEGG 895 (1545)
T ss_pred EEEeCccccccccccccchhhhhhhhhhhhHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHHHHHHHHHhheEeCCCC
Confidence 999974321 111111111111 1110 0 0
Q ss_pred ---C---Cc------------------------eeeeeeceechhhccccceeEEEEeecCCC--CCCcEEEEeeeeecC
Q psy5921 878 ---P---TP------------------------VKLKFEKVYQPCILQTKKRYVGYMYETADQ--DKPIYEAKGIETVRR 925 (1200)
Q Consensus 878 ---p---~p------------------------i~LefEkvy~~~lL~~KKRYag~~~~~~~~--~~~~~~~KGie~vRR 925 (1200)
| .+ -+|+||+.-.-.+..+||||+...|+.++. .++++++||+|++|+
T Consensus 896 ~~~p~~~~~~~~~~d~~~g~~~~~~~~f~~~~ItkL~yEn~stv~~~~aKK~Yi~~vhd~e~~~~~~pKlK~~G~ea~KS 975 (1545)
T PHA03334 896 SVEPFKDGEDWWVVDPLDGIWTYVRDPFSSELITKLCYENTSTVTCRLAKKMYIYTNHELNNGPLGNTKIKMRGMQANKS 975 (1545)
T ss_pred cEeeccCCCceeeecCCCceEEEeccchhHhHHHHHhhhcchhhhhhhhhhhhheeeeecCCcccccceeeecccccccc
Confidence 0 00 157788877777888999999999987766 478999999999999
Q ss_pred CchHHHHHHHHHHHHHHhccCCHHHHHHH---HHHHHHHHHcCC
Q psy5921 926 DGCPAVSKILKKSLCLLFETKDLSVVKEY---VEKQFSKIISGR 966 (1200)
Q Consensus 926 D~~~l~k~i~~~vL~~Ll~~~d~~~v~~y---l~~~~~kl~~g~ 966 (1200)
..+.+++++..+++++||.+.-+.....+ -.-.|.++..|.
T Consensus 976 Stpga~r~~~~d~i~lI~~ggal~~~~~fe~l~~~~W~~v~~Gd 1019 (1545)
T PHA03334 976 SAAGATRRITNDFVNLIFKGGALRVTKHFEALQAVTWAKVSAGD 1019 (1545)
T ss_pred CCcHHHHHHHHHHHHHHhcCCeEEEcccccccceechhhccCCC
Confidence 99999999999999999987643222111 123466666664
No 23
>PHA02524 43A DNA polymerase subunit A; Provisional
Probab=100.00 E-value=8.8e-55 Score=511.57 Aligned_cols=365 Identities=17% Similarity=0.197 Sum_probs=278.0
Q ss_pred CCcceEEEEEEEeccCCCCCCCCCC--CcEEEEEEEecCCCCCCCceEEEEEecCCCCC-Cc------CCCCCeEEEEcC
Q psy5921 381 NYYLTVLAVEIHAISRALLKPDPAY--DEVKAIFYYLYTCPPEEDRKVGIILIGQESEL-PE------VRTKPIQMHFVS 451 (1200)
Q Consensus 381 ~p~LtvlSlDIeT~t~~~l~Pdp~~--DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~-p~------~~~~~~~V~~~~ 451 (1200)
...++++.+||||++. .||+|.. -||.+|+..-..+.. +. .....++.....- +. ....++.|..|.
T Consensus 103 ~~~i~~~~~DIEv~~~--~fp~~~~a~~~i~~i~~~d~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~f~ 178 (498)
T PHA02524 103 RDDVVIDVVDIEVTAP--EFPEPKYAKYEIDMISHVRLHNGK-KT-YYIFDLVKDVGHWDPKKSVLEKYILDNVVYMPFE 178 (498)
T ss_pred hhhceEEEEEEEecCC--CCCChhhcCCceEEEEeeecccCC-cc-EEEEeccccccCCCcccccccccccCCeEEEEeC
Confidence 3568999999999874 5898886 589999853222111 11 1111111111000 10 012367899999
Q ss_pred CHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHH-hCCCC---cccccccccccccccCccccccceeeecceE
Q psy5921 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV-LGLNL---NQELSRITEVEKRNSSRDEVKNTQLQMPGRI 527 (1200)
Q Consensus 452 nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~-lgi~l---~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRl 527 (1200)
+|++||.+|+++|++.|||||+|||+.+||||||.+||+. +|+.. +..+||...... ....+. ...+.+.||+
T Consensus 179 sE~eLL~~F~~~i~~~DPDIItGYNi~nFDlPYL~~Ra~~~lGi~~~~~~~~~Gr~~~~~s-~~~~G~--~~~~~I~GRv 255 (498)
T PHA02524 179 DEVDLLLNYIQLWKANTPDLVFGWNSEGFDIPYIITRITNILGEKAANQLSPYGKITSKTI-TNLYGE--KIIYKIHGIA 255 (498)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEeCCCcccCHHHHHHHHHHHhCCccccccccccccccccc-eeecCc--eeEEEEeeEE
Confidence 9999999999999999999999999999999999999975 89863 345666542111 000011 2257899999
Q ss_pred EeehHHHHHhh--hcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhH
Q psy5921 528 VINLWRLLRHE--VNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRT 605 (1200)
Q Consensus 528 vlDl~r~~r~e--l~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~ 605 (1200)
++|++.++++. .++.||+|++||++.||+.+.++. ..+.++|.++ +.+++.||++||.+++.|..++.+++..
T Consensus 256 ~iDl~~l~kk~s~~~l~sYsL~~Vs~~~Lg~~K~d~~-~~I~~l~~~d----~~rla~YclkDa~L~~~L~~~~~ll~~~ 330 (498)
T PHA02524 256 LMDYMDVFKKFSFTPMPDYKLGNVGYREVKADKLDYE-GPINKFRKAD----HQRYVDYCVRDTDIILLIDGRRCFIDLI 330 (498)
T ss_pred EeEHHHHHHHhhhccCCCCCHHHHHHHhcCCccccch-hhHHHHhcCc----hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999986 699999999999999999887774 3578888754 6899999999999999998889999999
Q ss_pred HHHHHhhcccchhhccCcchhhhhhhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccH
Q psy5921 606 SEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYP 685 (1200)
Q Consensus 606 ~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYP 685 (1200)
.++|+++|+++.+++ |+...++++|+++++++|+++|+.... ....+.||+|+||.+|+|++ |++|||+||||
T Consensus 331 ~~larvtglpl~~v~--~qikv~~~lllr~~~~~g~viP~~~~~----~~~~Y~GA~V~eP~~GlY~~-VivLDFaSLYP 403 (498)
T PHA02524 331 LSLSYYAKIRFDDVL--GTIKVWDSIIFNSLVESNVVIPAMKAS----PKQSFPGAYVKEPVPGGYRY-GLSFDLTSLYP 403 (498)
T ss_pred HHHHHHHCCCHHHhc--cHHHHHHHHHHHHHHHCCEecCCCCCC----CCCccCCeEEecCCCccccC-eEEEEccccCH
Confidence 999999999999995 455668899999999999999863221 13457899999999999997 67899999999
Q ss_pred HHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHH
Q psy5921 686 SVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMV 765 (1200)
Q Consensus 686 SIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~v 765 (1200)
|||++|||||+|+.+........ .+ .+ .+.|. ..+++..+|||..|++. ++||||.+|++|++.|+++
T Consensus 404 SII~a~NIsPeTl~~~~~~~~~~-~~--~~---~~~~~----~~~~~~~~P~G~~F~K~--~~GilP~iLe~Ll~~RK~~ 471 (498)
T PHA02524 404 SILRLLNISPEMIAGMFSPARLE-DY--IN---KVAPK----PSDQFSCAPNGMMYKKG--VVGVLPNETEKVFLQRKSE 471 (498)
T ss_pred HHHHHhCCCHHHhhccccccchh-hh--cc---ccCCC----CCcceEECCCCCEEecC--CCcccHHHHHHHHHHHHHH
Confidence 99999999999997642110000 00 00 00110 13678899999999995 7999999999999999999
Q ss_pred HHHhhhccCCH
Q psy5921 766 KQSMKEYKSNA 776 (1200)
Q Consensus 766 Kk~mK~~~~d~ 776 (1200)
|+.|+++..+.
T Consensus 472 Kk~M~~a~~~~ 482 (498)
T PHA02524 472 KKMMLAAIRNQ 482 (498)
T ss_pred HHHHHHhHhhH
Confidence 99999875443
No 24
>KOG1798|consensus
Probab=100.00 E-value=1.4e-52 Score=508.69 Aligned_cols=660 Identities=18% Similarity=0.254 Sum_probs=479.3
Q ss_pred cccCCcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCC-CC--C------Cc-CCCCCeEE
Q psy5921 378 HVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQE-SE--L------PE-VRTKPIQM 447 (1200)
Q Consensus 378 ~~~~p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~-~~--~------p~-~~~~~~~V 447 (1200)
.-..+..+||+|||||+...-+|||.+.|+|.||||++... |+++++.. -+ + |. .+.+...|
T Consensus 240 ~i~radp~VlAFDIETtKlPLKFPDae~DqIMMISYMiDGq--------GfLItNREiVs~DIedfEYTPKpE~eG~F~v 311 (2173)
T KOG1798|consen 240 LIERADPRVLAFDIETTKLPLKFPDAESDQIMMISYMIDGQ--------GFLITNREIVSEDIEDFEYTPKPEYEGPFCV 311 (2173)
T ss_pred ccccCCceEEEEeeecccCCCCCCCcccceEEEEEEEecCc--------eEEEechhhhccchhhcccCCccccccceEE
Confidence 33578899999999999988889999999999999998544 34444432 11 1 21 12345678
Q ss_pred EEcCCHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceE
Q psy5921 448 HFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRI 527 (1200)
Q Consensus 448 ~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRl 527 (1200)
...++|.+||.+|++.|++..|.||+.||++-|||||+-.||+.||+++...+|=.+... ..+.-+-.+
T Consensus 312 ~Ne~dEv~Ll~RfFeHiq~~kP~iivTyNGDFFDWPFve~Ra~~hGi~m~eEiGF~~D~~-----------gEyks~~c~ 380 (2173)
T KOG1798|consen 312 FNEPDEVGLLQRFFEHIQEVKPTIIVTYNGDFFDWPFVEARAKIHGISMNEEIGFRRDSQ-----------GEYKSPFCI 380 (2173)
T ss_pred ecCCcHHHHHHHHHHHHHhcCCcEEEEecCccccchhhHHHHHhcCCCcchhcCceeccc-----------cccccccee
Confidence 888999999999999999999999999999999999999999999999987777443321 223344567
Q ss_pred EeehHHHHHhh--hcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhH
Q psy5921 528 VINLWRLLRHE--VNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRT 605 (1200)
Q Consensus 528 vlDl~r~~r~e--l~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~ 605 (1200)
|+|.+++++++ +...|-.|..|.+.-||-....++++.+..+.... -..++.|...|+..|+-|..+. +.|..
T Consensus 381 HmDcfrWVKRDSYLPqGSqgLKAVTkaKLGYdPvEvdPEdM~~~A~Ek----PQ~lasYSVSDAVATYyLYMkY-VhPFI 455 (2173)
T KOG1798|consen 381 HMDCFRWVKRDSYLPQGSQGLKAVTKAKLGYDPVEVDPEDMVRMAMEK----PQTLASYSVSDAVATYYLYMKY-VHPFI 455 (2173)
T ss_pred ehhhhhhhhhcccCCCcccchhHHHHHhhCCCcccCCHHHhhhhhhhC----chhhhhcchHHHHHHHHHHHHH-hhhHH
Confidence 99999999986 57889999999999999988889999999887766 4689999999999999999998 89999
Q ss_pred HHHHHhhcccchhhccCcchhhhhhhhhhccccccccccCCChhh--h---cc--cCCCCCCCeeeccCCCccc------
Q psy5921 606 SEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQ--R---AH--MRAPESLPLILEPESRLYT------ 672 (1200)
Q Consensus 606 ~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~--~---~~--~~~~~~GglVleP~~G~Y~------ 672 (1200)
+.|+.|..+..++||..|++...|.+|+-+|...|.|+|.+.... + ++ ....|-||.|=--++|+++
T Consensus 456 FsLctIIPl~PDevLRKGSGTLCE~LLmVeA~~~NIv~PNK~~e~~~~f~dGhlleSETYVGGHVE~LesGVFRSDip~~ 535 (2173)
T KOG1798|consen 456 FSLCTIIPLNPDEVLRKGSGTLCEALLMVEAYHANIVFPNKHTEDPEKFYDGHLLESETYVGGHVECLESGVFRSDIPTE 535 (2173)
T ss_pred hhhhhccccChHHHHhcCcchHHHHHHHHHHHhcCeecCCcCccchhhhccCeeeeeeeeechhhhhHhcccccccCccc
Confidence 999999999999999999999999999999999999998765321 1 11 1123446665444455432
Q ss_pred -----------------------------------------------------------CC-eEEeecccccHHHHHHcC
Q psy5921 673 -----------------------------------------------------------DP-IIVLDFQSLYPSVIIAYN 692 (1200)
Q Consensus 673 -----------------------------------------------------------~p-V~vLDF~SLYPSIIiayN 692 (1200)
.| |.+||.++|||+||++..
T Consensus 536 F~~dp~a~~eLi~~l~~~L~~~l~vE~k~~vd~v~nfeEv~~~I~~kL~~lrd~p~R~E~PlIYHLDVaaMYPNIilTNR 615 (2173)
T KOG1798|consen 536 FRMDPSAYEELIDELGETLDFALTVENKVRVDEVTNFEEVKDEILEKLEELRDVPIREEGPLIYHLDVAAMYPNIILTNR 615 (2173)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHhhhcccchhhhcCHHHHHHHHHHHHHHhcCCCccccCCeEEEEehhhccCceeeecC
Confidence 34 789999999999999999
Q ss_pred CCccccCcccc----cCCCCC-----CCC--------------------------Ccc--------cccccChHH----H
Q psy5921 693 YCFSTCLGRVE----HLGVSD-----SFP--------------------------FGC--------IDLNVSIRS----L 725 (1200)
Q Consensus 693 IC~tT~l~~~~----~~~~~~-----~~~--------------------------~g~--------~~~~~~~~~----~ 725 (1200)
+.|..++.... +++..+ ..+ |+. .-...++.. +
T Consensus 616 LQP~siv~E~~C~~CDfN~P~ktC~Rkm~W~WRGe~~pa~r~EY~~I~~qlesE~f~~~~~~~~~k~F~~L~~~eq~~~~ 695 (2173)
T KOG1798|consen 616 LQPDSIVDEEICAACDFNKPGKTCKRKMEWAWRGEYFPAKRSEYHRIKKQLESESFPAGAPFSPSKSFHELSREEQAAKL 695 (2173)
T ss_pred CCCcccccHhhhccCCCCCCCcchhhhheeeeeeeEecCcchHHHHHHHHHHhccCCCCCCCCCCcccccCCHHHHHHHH
Confidence 99998765221 111100 000 110 001111110 0
Q ss_pred -hhcc-------CcEeeCCC---ceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccC---------CHHH----H--
Q psy5921 726 -KKLQ-------QKLTISPS---GVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKS---------NAAL----Q-- 779 (1200)
Q Consensus 726 -~~l~-------d~i~~sPn---G~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~---------d~~~----~-- 779 (1200)
+.++ ..+.+++- -...|. .+..++-..++.+.++|-++|.+-|..+. |.+. +
T Consensus 696 kkRl~~Ysrk~Y~rv~~~~i~eRet~ICq--RENpFYVdTVrsFRDRRYeyK~L~K~wkg~ls~a~~sg~~a~i~eak~m 773 (2173)
T KOG1798|consen 696 KKRLKDYSRKVYHRVKDTEIEERETTICQ--RENPFYVDTVRSFRDRRYEYKGLHKVWKGKLSAAKASGDLARIKEAKKM 773 (2173)
T ss_pred HHHHHHHHHHHHhHhcccchhhhhcchhh--ccCchhhhhHHHhhhhhhHHHHHHHHHHHHHhhhhccCchhhHHhhhhe
Confidence 0010 01111110 001111 24577888899999999999998885431 2211 1
Q ss_pred -HHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCC
Q psy5921 780 -RVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858 (1200)
Q Consensus 780 -~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~ 858 (1200)
-+||+.|+|.|.+.||+|||.... ++|||.+|+|+-|+.+|..||++|+++||. =.+.+.-|||+||+-+|+.-
T Consensus 774 vVlYdSLQLAHKcILNSFYGYVMRK-GsRWYSMEMAGIvc~TGAnIIq~AR~lVEr----iGrPLELDTDGIWCilP~SF 848 (2173)
T KOG1798|consen 774 VVLYDSLQLAHKCILNSFYGYVMRK-GSRWYSMEMAGIVCLTGANIIQMARELVER----IGRPLELDTDGIWCILPGSF 848 (2173)
T ss_pred EEehHhHHHHHHHHHhhhhhhhhcc-ccchheeehhheeeccchHHHHHHHHHHHH----hCCCeeccCCceEEeccCCC
Confidence 159999999999999999999988 569999999999999999999999999996 45688999999999998753
Q ss_pred HHH-----------------HH---HHH--------HHHHHHHHccC----CCceeeeeeceechhhccc--------cc
Q psy5921 859 KQE-----------------AF---EIG--------KEIANVVTNNN----PTPVKLKFEKVYQPCILQT--------KK 898 (1200)
Q Consensus 859 ~~e-----------------a~---~ig--------~ei~~~Vn~~~----p~pi~LefEkvy~~~lL~~--------KK 898 (1200)
++- ++ .+. +++++-++..| ...|.+|.|+.|+.|||.+ ||
T Consensus 849 PEnf~Fk~~n~kkvtiSYPc~mLN~~V~e~fTN~QYq~L~dp~~~~Y~t~SEnSIfFEVDGPYkAMILPaSkEEGk~lKK 928 (2173)
T KOG1798|consen 849 PENFTFKLKNGKKVTISYPCVMLNHLVHEGFTNHQYQELVDPVRLTYVTRSENSIFFEVDGPYKAMILPASKEEGKLLKK 928 (2173)
T ss_pred ccceEEEecCCcEEEEechHHHHHHHHHhccchhhHHHhcCcccceeeecccceEEEEecCceeEEeeccchhhhhhhhh
Confidence 321 00 011 12222111111 3468899999999999984 99
Q ss_pred eeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHH---HHHHHHHHHHHcCC---CChhhh
Q psy5921 899 RYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVK---EYVEKQFSKIISGR---ISVQDM 972 (1200)
Q Consensus 899 RYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~---~yl~~~~~kl~~g~---v~~~dl 972 (1200)
|||-+..++ .--+.||+|+.||.--.++|.+|.++++..|.+..++++. .++.+.|-+|+.++ ++-+++
T Consensus 929 RYAVFN~DG-----sLAELKGFEiKRRGEL~lIK~FQs~lF~~FL~GstLEEcY~aVA~Vad~WLDiL~s~G~~l~D~eL 1003 (2173)
T KOG1798|consen 929 RYAVFNEDG-----SLAELKGFEIKRRGELKLIKVFQSELFKVFLKGSTLEECYSAVAAVADRWLDILDSHGADLTDSEL 1003 (2173)
T ss_pred eeEEecCCC-----chhhhcCceeeecchhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHhccCCCCcHHH
Confidence 999887642 2458899999999999999999999999999999999876 46778888887643 333333
Q ss_pred h--Hh--hcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCC-CCCCeeeEEEEeCCCCCCcccccCChhhhhc-------
Q psy5921 973 T--FA--KEY-RGQAGYKPGACVPALSLARQWVLTDPRAEP-RVSERVPYVIVSGAPGLPLIKLVKSPYELLQ------- 1039 (1200)
Q Consensus 973 i--i~--K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p-~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~------- 1039 (1200)
. |+ ++. |++++|...++ -.+.-|+|+.+--+...+ -.|-+..|||...|.|.++.+||. |..++.
T Consensus 1004 ~elISEnrSMSk~L~dYg~QKS-tsitTAkRLaeFLGd~MvKDkGL~C~yIIs~~P~g~PVtERAI-PVAIF~ae~~vk~ 1081 (2173)
T KOG1798|consen 1004 LELISENRSMSKKLEDYGGQKS-TSITTAKRLAEFLGDDMVKDKGLACRYIISRKPEGAPVTERAI-PVAIFQAEPPVKK 1081 (2173)
T ss_pred HHHHhhchhhhhhHHHhccccc-hHHHHHHHHHHHhchhhhhccCceeEEEEEecCCCCCcccccc-eeEEEecCcHHHH
Confidence 2 22 333 45678976654 367778887764222222 478899999999999999999986 433221
Q ss_pred --------cC-------CCCCChHHHhhccchhHHHHHH----------hhc-CCChhhhhhc
Q psy5921 1040 --------DS-------SLRLNSEYYITRVIIPPLERCF----------LLL-GTPVLPWYKN 1076 (1200)
Q Consensus 1040 --------~~-------~l~iD~~YYi~kqi~ppl~Rll----------~~~-G~d~~~w~~~ 1076 (1200)
+. ...|||+||+++ +-..+.+|. +|+ -+....|++.
T Consensus 1082 ~fLRkW~k~~sl~d~dIR~IiDWdYY~eR-LgSaIQKiItIPAAlQ~VsNPVpRv~hPdWL~k 1143 (2173)
T KOG1798|consen 1082 HFLRKWTKDSSLEDTDIRAIIDWDYYRER-LGSAIQKIITIPAALQGVSNPVPRVPHPDWLQK 1143 (2173)
T ss_pred HHHHHHhccCccccCChheeeehHHHHHH-HHHHHHHHhhhHHHHhccCCCCCCCCCcHHHHh
Confidence 11 236899999997 444444444 333 3344678764
No 25
>cd05535 POLBc_epsilon DNA polymerase type-B epsilon subfamily catalytic domain. Three DNA-dependent DNA polymerases type B (alpha, delta, and epsilon) have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase (Pol) epsilon has been proposed to play a role in elongation of the leading strand during DNA replication. Pol epsilon might also have a role in DNA repair. The structure of pol epsilon is characteristic of this family with the exception that it contains a large c-terminal domain with an unclear function. Phylogenetic analyses indicate that Pol epsilon is the ortholog to the archaeal Pol B3 rather than to Pol alpha, delta, or zeta. This might be because pol epsilon is ancestral to both archaea and eukaryotes DNA polymerases type B.
Probab=100.00 E-value=3e-48 Score=457.13 Aligned_cols=302 Identities=19% Similarity=0.251 Sum_probs=240.1
Q ss_pred cCCChHHHHHHHHHHHHHHHHHhhhccC---------CH-------HHHHHHHHHHHhcccccccccCccccccCCCCCc
Q psy5921 747 RCGILPKMLQEILDTRLMVKQSMKEYKS---------NA-------ALQRVLHARQLGLKLIANVTYGYTAANFSGRMPC 810 (1200)
Q Consensus 747 r~GILP~iL~~Ll~~R~~vKk~mK~~~~---------d~-------~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~ 810 (1200)
+.+++...++.+.++|..+|++.|..+. ++ .+..+||++|+|+|+++||||||+|+. .+|||+
T Consensus 220 En~Fyvdtvr~FrdrRy~yK~~~k~~k~~~~~~~~~~~~~~~~~a~~~~~lyDs~Q~A~KiIlNSfYGYlG~~-gsRwYs 298 (621)
T cd05535 220 ENPFYVDTVRAFRDRRYEYKGLHKVWKKKLEAAKAAGDAAEIKEAKKMVVLYDSLQLAHKCILNSFYGYVMRK-GSRWYS 298 (621)
T ss_pred cCCcHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhHHHHHHHHHHHHHHHHHHHHHHHhhccCccCcC-CcccCC
Confidence 6799999999999999999999886532 21 223579999999999999999999998 579999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHH---HHHHHHHH---------H-----HHH
Q psy5921 811 VEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQE---AFEIGKEI---------A-----NVV 873 (1200)
Q Consensus 811 ~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~e---a~~ig~ei---------~-----~~V 873 (1200)
.++|++||++||+||+.|++++|+ .|+.| |||||||||.+|+...++ +.+.|+++ . +.+
T Consensus 299 ~emA~~VT~~GreIIk~tr~lvE~---~G~~V-egDTDsI~~~lp~~~~e~~~~~~k~g~~~~~~~~~~~LN~~V~~~~t 374 (621)
T cd05535 299 MEMAGIVCYTGANIIQMARELVEQ---IGRPL-ELDTDGIWCILPKSFPENFTFKTKNGKKVTISYPCVMLNHLVHKKFT 374 (621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHh---cCCEE-EEecCeeEEEcCCCChHHHHHHhhccchhhhhhhHHHHHHHHHHHHH
Confidence 999999999999999999999996 88877 799999999998765443 23234332 1 223
Q ss_pred HccC-----C----------Cceeeeeeceechhhcc--------ccceeEEEEeecCCCCCCcE-EEEeeeeecCCchH
Q psy5921 874 TNNN-----P----------TPVKLKFEKVYQPCILQ--------TKKRYVGYMYETADQDKPIY-EAKGIETVRRDGCP 929 (1200)
Q Consensus 874 n~~~-----p----------~pi~LefEkvy~~~lL~--------~KKRYag~~~~~~~~~~~~~-~~KGie~vRRD~~~ 929 (1200)
|..+ | .+|++|+|++|++|||+ .|||||++..+ +++ ++||+|++|||||+
T Consensus 375 n~qy~~l~~p~~~~y~i~se~~IefEvDG~Yk~mllpask~~~~~~KKRYAv~~~d------G~i~elKGfEikRRd~~~ 448 (621)
T cd05535 375 NDQYQELVDPSTGTYETRSENSIFFEVDGPYKAMILPASKEEGKLLKKRYAVFNED------GSLAELKGFEVKRRGELQ 448 (621)
T ss_pred HHHhhhccCcccccccccccceeEEEeccceeeeEcccccccccccccceEEEcCC------CCEEEEeCceeeeCCHHH
Confidence 3221 1 24999999999999995 69999987542 345 89999999999999
Q ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH----HHc--CCCCh----hhhhHhhcc-cCCCCCCCCCCchHHHHHHH
Q psy5921 930 AVSKILKKSLCLLFETKDLSVVKEYVEKQFSK----IIS--GRISV----QDMTFAKEY-RGQAGYKPGACVPALSLARQ 998 (1200)
Q Consensus 930 l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~k----l~~--g~v~~----~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r 998 (1200)
|+|++|+++++.||.+++++++.+++.+.+.+ |.+ +.++. +.+++++.+ |.+++|.+.++ +|+.+|+|
T Consensus 449 LaK~fQ~eV~e~iL~g~~~Eea~~~V~~v~~~~ld~L~~~~~~~~d~eLi~li~~~k~LsK~l~eY~~~ks-~~V~~AkR 527 (621)
T cd05535 449 LIKIFQSEVFDAFLKGSTLEECYAAVAAVANYWLDVLDSKGENLDDEELFELISENRSMSKKLEEYGNQKS-TSITTAKR 527 (621)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHhhcccCCCHHHcCCCCC-cHHHHHHH
Confidence 99999999999999999999999999888877 665 56663 335568999 67899998664 58999999
Q ss_pred HHHh-CCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhc---------------c-------CCCCCChHHHhhccc
Q psy5921 999 WVLT-DPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQ---------------D-------SSLRLNSEYYITRVI 1055 (1200)
Q Consensus 999 ~~~~-d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~---------------~-------~~l~iD~~YYi~kqi 1055 (1200)
+.+. +.+.....|+.++|||++++.+.++.+||..+ .+++ + -.--|||+||+++ |
T Consensus 528 l~e~lg~~~~~~~G~~i~YII~~~p~~~~vseRAiPv-~if~~~~~~~~~~lrkW~~~~~~~~~d~r~iiDW~YY~~r-l 605 (621)
T cd05535 528 LAEFLGDQMVKDKGLSCKYIISKKPEGSPVTERAIPV-AIFQAEPEVRKHYLRKWLKDPSDEDLDIRDIIDWDYYIER-L 605 (621)
T ss_pred HHHhhcCCcccCCCCeEEEEEEeCCCCCCccccccCh-hhhcCCHHHHHHHHHHHhCCCCcCCCChhhhhchHHHHHH-H
Confidence 9873 44667789999999999998888999998743 3322 1 1225799999987 4
Q ss_pred hhHHHHH
Q psy5921 1056 IPPLERC 1062 (1200)
Q Consensus 1056 ~ppl~Rl 1062 (1200)
-..+..|
T Consensus 606 ~~~iqKi 612 (621)
T cd05535 606 GSTIQKI 612 (621)
T ss_pred HHHHHhe
Confidence 4444433
No 26
>cd05778 DNA_polB_zeta_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase zeta. DNA polymerase zeta is a family-B DNA polymerase which is distantly related to DNA polymerase delta. It plays a major role in translesion replication and the production of either spontaneous or induced mutations. In addition, DNA polymerase zeta also appears to be involved in somatic hypermutability in B lymphocytes, an important element for the production of high affinity antibodies in response to an antigen. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The DnaQ-like 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are crucial for metal binding and catalysis.
Probab=100.00 E-value=5.9e-38 Score=343.54 Aligned_cols=216 Identities=38% Similarity=0.671 Sum_probs=182.6
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCC---ceEEEEEecCCCCC-Cc----CCCCCeEEEEcCCH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEED---RKVGIILIGQESEL-PE----VRTKPIQMHFVSNE 453 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~---~~~gv~~v~~~~~~-p~----~~~~~~~V~~~~nE 453 (1200)
++||+|||||||.++++++|||+.|||++|+++++++..... ...|++++.+.... .. ....+..|..|++|
T Consensus 2 ~~l~~ls~dI~~~s~~~~~Pdp~~D~I~~I~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~E 81 (231)
T cd05778 2 QHLTILSLEVHVNTRGDLLPDPEFDPISAIFYCIDDDVSPFILDANKVGVIIVDELKSNASNGRIRSGLSGIPVEVVESE 81 (231)
T ss_pred CceEEEEEEEEECCCCCCCcCCCCCCeeEEEEEEecCCCcccccccceeEEEEcCccchhhhhccccCCCCCeEEEeCCH
Confidence 689999999999999999999999999999999987764222 24566655543211 11 01235789999999
Q ss_pred HHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCc-ccccccccccccccCc-----cccccceeeecceE
Q psy5921 454 KELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLN-QELSRITEVEKRNSSR-----DEVKNTQLQMPGRI 527 (1200)
Q Consensus 454 keLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~-~~lgR~~~~~~~~~s~-----~~~~~~~~~i~GRl 527 (1200)
++||.+|+++|+.+|||||+|||+++||||||++||+.+++..+ ..+||++......... +.+....+.+.||+
T Consensus 82 ~~LL~~f~~~i~~~DPDii~GyNi~~fd~~YL~~Ra~~l~~~~~~~~lgR~~~~~~~~~~~~~~~~g~~~~~~~~i~GRi 161 (231)
T cd05778 82 LELFEELIDLVRRFDPDILSGYEIQRSSWGYLIERAAALGIDDLLDEISRVPSDSNGKFGDRDDEWGYTHTSGIKIVGRH 161 (231)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeccccCcHHHHHHHHHHhCCcchhhhccCCCCCCcccccccccccccccCCceEEeeEE
Confidence 99999999999999999999999999999999999999999988 8899987543322111 11234568999999
Q ss_pred EeehHHHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhh
Q psy5921 528 VINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE 597 (1200)
Q Consensus 528 vlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~ 597 (1200)
++|+|+.+|++++++||+|++||+++||++++++++.+|++||.++++..++++++||++|+.++++|++
T Consensus 162 ~lD~~~~~r~~~kl~sYsL~~V~~~~L~~~k~~~~~~~i~~~~~~~~~~~r~~v~~Y~l~d~~l~l~Ll~ 231 (231)
T cd05778 162 ILNVWRLMRSELALTNYTLENVVYHVLHQRIPLYSNKTLTEWYKSGSASERWRVLEYYLKRVRLNLEILD 231 (231)
T ss_pred EeEhHHHHHHHcCcccCCHHHHHHHHhCCCCCCCCHHHHHHHHHcCCHhHhHHHHHHHHHHHHHHHHhhC
Confidence 9999999999999999999999999999999999999999999887767899999999999999999974
No 27
>cd05777 DNA_polB_delta_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase delta, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase delta. DNA polymerase delta is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase delta is the enzyme responsible for both elongation and maturation of Okazaki fragments on the lagging strand. It is also implicated in mismatch repair (MMR) and base excision repair (BER). The catalytic subunit displays both polymerase and 3'-5' exonuclease activities. The exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic
Probab=100.00 E-value=1e-36 Score=333.90 Aligned_cols=219 Identities=23% Similarity=0.295 Sum_probs=185.9
Q ss_pred cCCcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHH
Q psy5921 380 ENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 380 ~~p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~ 459 (1200)
..|+|++|||||||.++.+.||+|..|+|++|++++..++......++++++.++... .+..|..|.+|++||.+
T Consensus 3 ~~p~l~~ls~DIE~~s~~g~fP~p~~D~Ii~Is~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~v~~~~~E~eLL~~ 77 (230)
T cd05777 3 KIAPLRILSFDIECAGRKGVFPEPEKDPVIQIANVVTRQGEGEPFIRNIFTLKTCAPI-----VGAQVFSFETEEELLLA 77 (230)
T ss_pred CCCCceEEEEEEEECCCCCCCCCCCCCeEEEEEEEEEeCCCCCCceeEEEEeCCCCCC-----CCCEEEEECCHHHHHHH
Confidence 4689999999999999988899999999999999987655433334567777665432 35778999999999999
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCccccccccccccc----ccCc---cccccceeeecceEEeehH
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR----NSSR---DEVKNTQLQMPGRIVINLW 532 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~----~~s~---~~~~~~~~~i~GRlvlDl~ 532 (1200)
|+++|+++|||||+|||+++||||||.+||+.+|++.|..+||.+..... .++. +......+.+.||+++|+|
T Consensus 78 f~~~i~~~DPDii~GyN~~~FDl~yL~~R~~~l~i~~~~~lgR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~iD~~ 157 (230)
T cd05777 78 WRDFVQEVDPDIITGYNICNFDLPYLLERAKALKLNTFPFLGRIKNIKSTIKDTTFSSKQMGTRETKEINIEGRIQFDLL 157 (230)
T ss_pred HHHHHHhcCCCEEEEecCCCCCHHHHHHHHHHhCCccccccccccCCceeEeCCcccccccccccceEEEEcCEEeeeHH
Confidence 99999999999999999999999999999999999998899998643211 1111 1222345789999999999
Q ss_pred HHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhh
Q psy5921 533 RLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGR 604 (1200)
Q Consensus 533 r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~ 604 (1200)
+.+++++++.+|+|++||+++||+++++++++++.+||.++ +..+.++++||++||.++++|+.+|+++..
T Consensus 158 ~~~~~~~kl~sy~L~~Va~~~Lg~~k~d~~~~~i~~~~~~~-~~~~~~l~~Y~~~Da~l~l~L~~kl~~~~~ 228 (230)
T cd05777 158 QVIQRDYKLRSYSLNSVSAHFLGEQKEDVHYSIITDLQNGN-PETRRRLAVYCLKDAYLPLRLLDKLMCLVN 228 (230)
T ss_pred HHHHHhcCcccCcHHHHHHHHhCCCCCCCCHHHHHHHHccC-HhHhHHHHHhhHHHHHHHHHHHHHHhhHcc
Confidence 99999999999999999999999999999999999998754 356789999999999999999999988764
No 28
>PHA02523 43B DNA polymerase subunit B; Provisional
Probab=100.00 E-value=3.6e-37 Score=342.14 Aligned_cols=285 Identities=18% Similarity=0.163 Sum_probs=218.2
Q ss_pred HHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHH--------HhcccCcCcce-EEeccCCce
Q psy5921 780 RVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIE--------TVNNTSKWQCR-VVYGDTDSM 850 (1200)
Q Consensus 780 ~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~--------~ie~~~~~g~~-VIYGDTDSv 850 (1200)
+.++.+|.|+|+++||+|||+|+. .+|||+.++|++||++||++|+.+.+ ++++ .|++ |||||||||
T Consensus 37 a~~~~~q~AiKIlmNSfYGylG~~-~~R~yd~e~A~aVT~~Gre~Ik~i~~~~ney~~~l~~t---~G~~~VIYgDTDSi 112 (391)
T PHA02523 37 QKRNTNQLNRKILINSLYGALGNN-WFRYFDLRNAEAITTYGQLAIRWIERKLNEYINELVKT---TGVDYVCYIDTDSV 112 (391)
T ss_pred HHHhcchHHHHHHHHhhhhhhcCC-CceecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---cCcceEEEecCCee
Confidence 467899999999999999999998 47999999999999999999994444 4544 7996 999999999
Q ss_pred eEecCCCCHH--------H-----------HHH-------HHHHHHHHHHccCCCceeeeeeceechh--------hccc
Q psy5921 851 FVLAPGKTKQ--------E-----------AFE-------IGKEIANVVTNNNPTPVKLKFEKVYQPC--------ILQT 896 (1200)
Q Consensus 851 fV~~~~~~~~--------e-----------a~~-------ig~ei~~~Vn~~~p~pi~LefEkvy~~~--------lL~~ 896 (1200)
||.++....+ + +++ -.+++++++|+. .+.+.+|||++|.++ ++.+
T Consensus 113 fv~~~~~v~~~~~~~~~d~~~~vd~ldk~~~~~iE~~In~sY~el~eymna~-~h~~~m~rE~ia~~f~~s~g~~gfw~~ 191 (391)
T PHA02523 113 YLNMEAVVNRVGIDKFRDTNHLIDFLDNLGSKKLEPFIDDSYKELEEYMNHD-HHLLLMDREAIFGAPLGSDGIGGFWTG 191 (391)
T ss_pred EEEecchHHHHhhhhhccchhhhHHHHHHHHHHhHHHHHHHHHHHHHHhcch-hhhhhhhHHHhccccccccccchhhhh
Confidence 9999631110 0 011 124455566554 478999999999996 7789
Q ss_pred cceeEEEEeecCCCC--CCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCChhhhhH
Q psy5921 897 KKRYVGYMYETADQD--KPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTF 974 (1200)
Q Consensus 897 KKRYag~~~~~~~~~--~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii 974 (1200)
|||||+..|+++|.. +|++++.|+|++|+|.++++|++|+++++.|+.+.+ +.+++|+.+..++.+ ++|+++..+
T Consensus 192 KKRYA~~v~d~EG~r~~epklkI~G~E~qrSstp~~~~~~~ke~i~~Il~~~e-e~iqeyi~~~~~ey~--~~~~~~Ia~ 268 (391)
T PHA02523 192 KKRYALNVYDMEGTRYAEPHLKIMGLETQRSSTPLACQKSLKESIRRLLQEGE-SSLQDYFKEFKDEFK--NIPYQDVAA 268 (391)
T ss_pred hhhhhheeeeccCccccCCccceeeeeecccCchHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHh--cCCHHHhcc
Confidence 999999999988774 489999999999999999999999999999998655 559999999999986 799999998
Q ss_pred hhcccCCCCCCC------CCCchHHHHH---HHHHHhC-CCCCCCCCCeeeEEEEeCCCC--CCccccc---CChhhhhc
Q psy5921 975 AKEYRGQAGYKP------GACVPALSLA---RQWVLTD-PRAEPRVSERVPYVIVSGAPG--LPLIKLV---KSPYELLQ 1039 (1200)
Q Consensus 975 ~K~lr~~~~Y~~------~~~~P~v~vA---~r~~~~d-~~~~p~~GerI~YVI~~g~~~--~~~~~r~---~~P~e~~~ 1039 (1200)
++...+.+.|.+ +++..||.-| +++...+ .-..++.|+.|..|..+.++. +.-.... .-|.|+-.
T Consensus 269 ~s~~~~I~K~~d~~~~~~kg~p~hvrGal~~N~~~~~~~~~~~i~~GeKvk~l~Lk~~np~~~~c~~~~sgd~iP~ef~~ 348 (391)
T PHA02523 269 VSSANNIGKNGDALGFPIKGTPYHVKGVLAYNRIAKTDTAIPMISEGEKVMVLPLRDRNPFNEACFAWPSGTPIPPAVEA 348 (391)
T ss_pred cCCCCchhhcccccCCCCCCCchhhHHHHHHHHHhcccCCCccccCCCceEEEeccCCCCCCcceEeccCCCCCCHHhhc
Confidence 655433333322 2243466444 5655443 223468999999999976542 2211222 34777644
Q ss_pred cCCCCCChHHHhhccchhHHHHHHhhcCCChhh
Q psy5921 1040 DSSLRLNSEYYITRVIIPPLERCFLLLGTPVLP 1072 (1200)
Q Consensus 1040 ~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~ 1072 (1200)
+--..+|++-.++|.++.||.||++++|++..+
T Consensus 349 D~~k~iDy~~mfeKtf~~Pl~~I~ea~g~~~ek 381 (391)
T PHA02523 349 DVLKYLDINKLFDKTFVKPLSSICEATKTDYEF 381 (391)
T ss_pred cHHhhccHHHHHHHHHHhHHHHHHHHhCCChhh
Confidence 423468999999999999999999999998754
No 29
>cd05776 DNA_polB_alpha_exo inactive DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase alpha. DNA polymerase alpha is a family-B DNA polymerase with a catalytic subunit that contains a DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (delta and epsilon are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase alpha is almost exclusively required for the initiation of DNA replication and the priming of Okazaki fragments during elongation. It associates with DNA primase and is the only enzyme able to start DNA synthesis de novo. The catalytic subunit contains both polymerase and 3'-5' exonuclease domains, but only exhibits polymerase activity. The 3'-5' exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, without the four conserved acidic residues that are
Probab=100.00 E-value=1.3e-34 Score=318.01 Aligned_cols=220 Identities=17% Similarity=0.212 Sum_probs=185.2
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCC-C-----ceE-EEEEecCCCCC--CcCC-----CCCeEE
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEE-D-----RKV-GIILIGQESEL--PEVR-----TKPIQM 447 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d-~-----~~~-gv~~v~~~~~~--p~~~-----~~~~~V 447 (1200)
|||++|||.|.|. ++++.+++||+|||+.++++.+.| + ..+ .++++++.+.. |.++ ..+..|
T Consensus 1 Ppl~v~sls~~T~----~n~k~~~~EI~~iS~~~~~~~~~d~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~v 76 (234)
T cd05776 1 PPLTVMSLSIKTV----LNSKTNKNEIVMISMLVHRNVSLDKPTPPPPFQSHTCTLTRPLGRSPPPDLFEKNAKKKKTKV 76 (234)
T ss_pred CCeEEEEEEeEEE----ecCcCCcchhheehHHHhcCCCCCCCCCCcccccceEEEEeCCCCCCCCchHHHHHHhcCCcE
Confidence 7999999999999 567778999999999999887654 1 122 25556666542 3332 235679
Q ss_pred EEcCCHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceE
Q psy5921 448 HFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRI 527 (1200)
Q Consensus 448 ~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRl 527 (1200)
..|++|++||.+|+++|+.+|||||+|||+.+|||+||++||+.+|++.|+++||++.....+...+..+..+..++||+
T Consensus 77 ~~~~~E~~LL~~f~~~i~~~DPDiivG~Ni~~fdl~~L~~R~~~l~i~~ws~iGR~~~~~~~~~~~~~~~~~~~~~~GRl 156 (234)
T cd05776 77 RIFENERALLNFFLAKLQKIDPDVLVGHDLEGFDLDVLLSRIQELKVPHWSRIGRLKRSVWPKKKGGGKFGERELTAGRL 156 (234)
T ss_pred EEeCCHHHHHHHHHHHHhhcCCCEEEeeccCCCCHHHHHHHHHHhCCCccccccccccccCccccccccccccccccCch
Confidence 99999999999999999999999999999999999999999999999999999998644322221122344567899999
Q ss_pred EeehHHHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHH
Q psy5921 528 VINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSE 607 (1200)
Q Consensus 528 vlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~e 607 (1200)
+||+|..+|+.++++||+|++||+++||+++.+++++++.++|.+. ..+.++++||++|+.++++|+.+|++|+++.|
T Consensus 157 ~~D~~~~~k~~~~~~sY~L~~va~~~Lg~~k~di~~~~i~~~~~~~--~~l~~l~~y~~~Da~l~~~L~~kl~il~Ltkq 234 (234)
T cd05776 157 LCDTYLSAKELIRCKSYDLTELSQQVLGIERQDIDPEEILNMYNDS--ESLLKLLEHTEKDAYLILQLMFKLNILPLTKQ 234 (234)
T ss_pred hhccHHHHHHHhCCCCCChHHHHHHHhCcCcccCCHHHHHHHHhCH--HHHHHHHHHHHHHHHHHHHHHHHHCCCcCCCC
Confidence 9999999999889999999999999999999999999999999873 56899999999999999999999999998753
No 30
>cd05780 DNA_polB_Kod1_like_exo DEDDy 3'-5' exonuclease domain of Pyrococcus kodakaraensis Kod1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal family-B DNA polymerases with similarity to Pyrococcus kodakaraensis Kod1, including polymerases from Desulfurococcus (D. Tok Pol) and Thermococcus gorgonarius (Tgo Pol). Kod1, D. Tok Pol, and Tgo Pol are thermostable enzymes that exhibit both polymerase and 3'-5' exonuclease activities. They are family-B DNA polymerases. Their amino termini harbor a DEDDy-type DnaQ-like 3'-5' exonuclease domain that contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members of this subfamily show
Probab=99.97 E-value=3.1e-30 Score=276.03 Aligned_cols=195 Identities=21% Similarity=0.281 Sum_probs=161.6
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~ 461 (1200)
|++++++|||||.++.+ +|+|..|+|++|++..... ..++...+.. ...+..+.+|++||.+|+
T Consensus 1 p~l~i~~fDIEt~~~~g-~p~~~~d~Ii~Is~~~~~~-------~~~~~~~~~~--------~~~v~~~~~E~~lL~~F~ 64 (195)
T cd05780 1 EDLKILSFDIEVLNHEG-EPNPEKDPIIMISFADEGG-------NKVITWKKFD--------LPFVEVVKTEKEMIKRFI 64 (195)
T ss_pred CCceEEEEEEEecCCCC-CCCCCCCcEEEEEEecCCC-------ceEEEecCCC--------CCeEEEeCCHHHHHHHHH
Confidence 78999999999998775 7999999999999865322 1244443321 125778999999999999
Q ss_pred HHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcC
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNL 541 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L 541 (1200)
++|+.+|||||+|||+.+||||||.+|+..+|++. .+||.......... + ......+.||+++|+|+.+++.+++
T Consensus 65 ~~i~~~dpdiivgyN~~~FD~pyL~~R~~~~gi~~--~~~r~~~~~~~~~~-g--~~~~~~i~Gr~~lDl~~~~~~~~~l 139 (195)
T cd05780 65 EIVKEKDPDVIYTYNGDNFDFPYLKKRAEKLGIEL--DLGRDGSEIKIQRG-G--FNNASEIKGRIHVDLYPVARRTLNL 139 (195)
T ss_pred HHHHHcCCCEEEecCCCCCcHHHHHHHHHHhCCCC--ccccCCCceeEeec-c--eeeeeccCCeEEEeHHHHHHhhCCC
Confidence 99999999999999999999999999999999984 47776532221110 1 1234578999999999999999999
Q ss_pred CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 542 QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 542 ~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+|+|++||+++||.++++++++++.++|.+++ .+.++++||++|+.++++|+.++
T Consensus 140 ~sy~L~~v~~~~Lg~~k~d~~~~~i~~~~~~~~--~~~~l~~Y~~~D~~lt~~L~~~~ 195 (195)
T cd05780 140 TRYTLERVYEELFGIEKEDVPGEEIAEAWDSGE--NLERLFRYSMEDAKYTYEIGKEF 195 (195)
T ss_pred CcCcHHHHHHHHhCCCCCcCCHHHHHHHHhCCC--chHHHHHHhHHHHHHHHHHHhhC
Confidence 999999999999999999999999999999874 58999999999999999999764
No 31
>TIGR00592 pol2 DNA polymerase (pol2). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=5.6e-33 Score=361.97 Aligned_cols=385 Identities=19% Similarity=0.156 Sum_probs=282.9
Q ss_pred cCCcceEEEEEEEeccCCC--C--CCCCCCCcEEEEEEE----ecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcC
Q psy5921 380 ENYYLTVLAVEIHAISRAL--L--KPDPAYDEVKAIFYY----LYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVS 451 (1200)
Q Consensus 380 ~~p~LtvlSlDIeT~t~~~--l--~Pdp~~DeIiaIs~~----v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~ 451 (1200)
..|+++++||||||.+..+ . +|+|..|+|++|+.. +...+...+..+.++.+.+|..+ .+..|..|.
T Consensus 194 ~~p~~~~~sfdiE~~~~~g~~~fp~~~~~~D~ii~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~~ 268 (1172)
T TIGR00592 194 GDPELKLASFDIETYFHDGKDFFPGDENPADEEIMISTTPVIAKQWDYESEPEARVVTWKKPDKPT-----TGSYVESVS 268 (1172)
T ss_pred CCCcccccccccccccccccccCcccccccccccccccccccccccccCCCccchhhhccCccccC-----CCccceecc
Confidence 4589999999999987643 3 377788999999853 22222212223335556665543 346788999
Q ss_pred CHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHH-------------HHHHhCCCCccccccccccccccc---Ccc-
Q psy5921 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLE-------------RGYVLGLNLNQELSRITEVEKRNS---SRD- 514 (1200)
Q Consensus 452 nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~-------------Ra~~lgi~l~~~lgR~~~~~~~~~---s~~- 514 (1200)
+|.+||..|+++|++.|||||+|||+.+||||||.+ |++.+|.- ..+||... ..+. ..+
T Consensus 269 ~E~~~L~~f~~~i~~~dpdii~gYNi~~FD~pyl~~~~~~~~~~da~~dr~~~~G~~--~lfGr~~~--~~s~~~~v~g~ 344 (1172)
T TIGR00592 269 EEISMIKRFWDVIDQEDTDVEITVNGDNFDLVYLADRQVFQFYWDAYEDPAEKLGVV--LLFGRDVD--HVSPCVQVKGI 344 (1172)
T ss_pred chHHHHhhHHHHHhhcCcchhcccccccCccceecCCceEEeeHHhhhHHhhCCCeE--EEecccCC--ceeEEEEECCe
Confidence 999999999999999999999999999999999999 56655543 24676211 0000 011
Q ss_pred ccccceeeecceEEeehHHHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHH
Q psy5921 515 EVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIR 594 (1200)
Q Consensus 515 ~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~ 594 (1200)
.+....+.+.||+.+|++..+++.+++.+|+|+.|+.++||.++.++++..+.+.|..+.. .+.+.|+++|+.+++.
T Consensus 345 ~R~~~~l~~~Grv~~D~~~~~~~~~~l~~y~le~vs~~~lg~~k~dv~~k~I~~~~~~~~~---~~~v~y~~~~lkv~y~ 421 (1172)
T TIGR00592 345 NRDLFFLPREGKIDFDLGKVTRRTINLPDYYLEFVSELALGYKKEKFRAKPIAKKYEFEAP---DIDAPYSSEYLEVTYE 421 (1172)
T ss_pred eeeeEEeeccccccccccchhcccccHHHHHHHHHHHHHhhcCcCceeeEEehhhccCCCC---ccCCcCCcceEEEEEc
Confidence 2234457889999999999999999999999999999999999999999999999987642 2568899999999999
Q ss_pred HhhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhccccccccccC-CChhhhc-ccCCCCCCCeeecc--CCCc
Q psy5921 595 LIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVS-PSIKQRA-HMRAPESLPLILEP--ESRL 670 (1200)
Q Consensus 595 Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~-ps~~~~~-~~~~~~~GglVleP--~~G~ 670 (1200)
++.++..++.. .+++.|.+|.+++..+++..++.++.|.++..+++.+. |...... .....+.|+.|++| .+|+
T Consensus 422 l~~~~~~l~~l--~~~~~g~~~~~vf~~n~g~~erfll~rki~gp~WL~i~~p~~~~~~~~S~c~yEga~v~~p~v~~g~ 499 (1172)
T TIGR00592 422 LGKEFAPMEAL--PSDLKGQTFWHVFGSNTGNLERFLLLRKIKGPCWLAVKGPDELEYPRRSWCKYEGGYVKPPNVEKGL 499 (1172)
T ss_pred cCccchhhhhh--hhhccCCcchheeccCHHHHHHHHhcCCCCCCceEEeCCCcccCcCCccccceEEEEecCccccccc
Confidence 98887555544 45777888988876666677788888999999887653 3321111 12344668999999 9999
Q ss_pred ccC--CeEEeecc--cccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCC-CceEEec--
Q psy5921 671 YTD--PIIVLDFQ--SLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP-SGVAFVD-- 743 (1200)
Q Consensus 671 Y~~--pV~vLDF~--SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sP-nG~~Fvk-- 743 (1200)
|.+ ||++|||+ |||||||+++|||++|++....++... ++. +.....+ .|+.|..
T Consensus 500 ~~~~pPl~vLdFsi~SlyPsi~~~~nl~iS~~v~~~~~~d~~------------~~~------~~~~~~~~~~~~~~~~~ 561 (1172)
T TIGR00592 500 DKTPPPLVVLDFSMKSLNPSIIRNEIVSIPDTLHREFALDKP------------PPE------PPYDVHPCVGTRPKDCS 561 (1172)
T ss_pred cCCCCCeEEEEeeeEEecCccccCceEEEEEEEeecccccCC------------CCC------CccceEEEEEEccCCCC
Confidence 998 89999999 999999999999998876432111100 000 0011111 1122210
Q ss_pred -----CCCcCCChHHHHHHHHHHHHHHHHHhhhcc-CCHHHHHHHHHHHHhcccccccc
Q psy5921 744 -----KSIRCGILPKMLQEILDTRLMVKQSMKEYK-SNAALQRVLHARQLGLKLIANVT 796 (1200)
Q Consensus 744 -----~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~-~d~~~~~~ld~rQ~ALKllaNS~ 796 (1200)
...++|++|..|..++++|.++++.|+... -||.+...||.+|.|||+++|=+
T Consensus 562 ~p~~~~~~~~~~~~~~L~~~~sEr~lL~~fl~~~~~~DPDii~g~n~~qfdlkvl~nR~ 620 (1172)
T TIGR00592 562 FPLDLKGEFPGKKPSLVEDLATERALIKKFMAKVKKIDPDEIVGHDYQQRALKVLANRI 620 (1172)
T ss_pred CCchhhhhhhccCCcEEEEecCHHHHHHHHHHHHHhcCCCEEEEEcccCccHHHHHHHH
Confidence 124789999999999999999999999763 36777778999999999999943
No 32
>PF03104 DNA_pol_B_exo1: DNA polymerase family B, exonuclease domain Several related DNA polymerases were too dissimilar to be included.; InterPro: IPR006133 DNA is the biological information that instructs cells how to exist in an ordered fashion: accurate replication is thus one of the most important events in the life cycle of a cell. This function is performed by DNA- directed DNA-polymerases 2.7.7.7 from EC) by adding nucleotide triphosphate (dNTP) residues to the 5'-end of the growing chain of DNA, using a complementary DNA chain as a template. Small RNA molecules are generally used as primers for chain elongation, although terminal proteins may also be used for the de novo synthesis of a DNA chain. Even though there are 2 different methods of priming, these are mediated by 2 very similar polymerases classes, A and B, with similar methods of chain elongation. A number of DNA polymerases have been grouped under the designation of DNA polymerase family B. Six regions of similarity (numbered from I to VI) are found in all or a subset of the B family polymerases. The most conserved region (I) includes a conserved tetrapeptide with two aspartate residues. Its function is not yet known. However, it has been suggested that it may be involved in binding a magnesium ion. All sequences in the B family contain a characteristic DTDS motif, and possess many functional domains, including a 5'-3' elongation domain, a 3'-5' exonuclease domain [], a DNA binding domain, and binding domains for both dNTP's and pyrophosphate []. This domain has 3' to 5' exonuclease activity and adopts a ribonuclease H type fold [].; GO: 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 1QHT_A 4AHC_A 3A2F_A 2JGU_A 4AIL_C 1NOY_A 1NOZ_B 3IAY_A 1WNS_A 3K5O_A ....
Probab=99.96 E-value=2.8e-29 Score=287.21 Aligned_cols=223 Identities=24% Similarity=0.424 Sum_probs=166.8
Q ss_pred CCCcC-CCChhhHHHHHHHhhc-CCCcccccccc-cccCCcCCcceEeeccc--CcccccccccCCcceEEEEEEEeccC
Q psy5921 322 KSSQI-DFNPDLFKSFIRKQLE-TPKRRICDSYA-IDAMTPDTTGDYQMGLD--NLNEVTSHVENYYLTVLAVEIHAISR 396 (1200)
Q Consensus 322 ~~~~~-~~n~~l~e~f~~~~~~-~g~cwl~i~~~-i~~~~~~s~~~fev~~~--~~~~~~~~~~~p~LtvlSlDIeT~t~ 396 (1200)
++.+. +.|.+..+.|+. +++ +|+||++++.. .......++|..++.+. ++.........|+|++|||||||.++
T Consensus 91 ~~~~~~e~~i~~~~rfl~-~~~i~~~~wi~i~~~~~~~~~~~s~~~~e~~~~~~~~~~~~~~~~~p~l~i~s~DIe~~~~ 169 (325)
T PF03104_consen 91 TFFKVYEADIPPLERFLI-DRNIRGPGWIKIKNPSKPVKDRVSWCDIEFSVDYSNLKPLPDESIPPPLRILSFDIETYSN 169 (325)
T ss_dssp TEEEEESTSS-HHHHHHH-HTTHCTTEEEEEETTECHHHHHTCTCSCECECCHHHHECHTSSSSGGGSEEEEEEEEECSS
T ss_pred ccchhhccCCCHHHheee-ecCcccceeeeccccccccccccccccccccccccccccccccccccccceeEEEEEEccc
Confidence 44555 899999999999 888 99999999998 55555578888777654 22222222223999999999999999
Q ss_pred CCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecC
Q psy5921 397 ALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYE 476 (1200)
Q Consensus 397 ~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyN 476 (1200)
++.+|+|..|+|++|++++++.+..+.....++++.++.... .+..|..|++|++||.+|+++|+++|||||+|||
T Consensus 170 ~~~~P~~~~d~I~~Is~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~~~~~E~~lL~~f~~~i~~~dPDii~GyN 245 (325)
T PF03104_consen 170 DGKFPDPEKDEIIMISYVVYRNGSSEPYRRKVFTLGSCDSIE----DNVEVIYFDSEKELLEAFLDIIQEYDPDIITGYN 245 (325)
T ss_dssp SSSS-TTTTSEEEEEEEEEEETTEEETTEEEEEECSCSCCTT----CTTEEEEESSHHHHHHHHHHHHHHHS-SEEEESS
T ss_pred cCCCCCCCCCeEEEEEEEEEeccccCCCceEEEEecCCCCCC----CCcEEEEECCHHHHHHHHHHHHHhcCCcEEEEec
Confidence 888999999999999999887653233445577777665321 1578999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhCCCCccccc-------ccccccccccCccccccceeeecceEEeehHHHHHhhhcCCCCCHHHH
Q psy5921 477 IETLSWGYLLERGYVLGLNLNQELS-------RITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENI 549 (1200)
Q Consensus 477 i~~FDlpYL~~Ra~~lgi~l~~~lg-------R~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~V 549 (1200)
+++||||||++||+.+|++.+...+ |+..........+..+...+.++||++||+|+.+|+.+++.+|+|++|
T Consensus 246 ~~~fD~~yl~~R~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Gr~~~D~~~~~~~~~~l~sY~L~~V 325 (325)
T PF03104_consen 246 IDGFDLPYLIERAKKLGIDMFDLNGRRWSRFGRLKRKKWPSSANGSRKFSRIDIPGRLVLDLYRLARKDYKLDSYSLDNV 325 (325)
T ss_dssp TTTTHHHHHHHHHHHTTTCTHHSTTSTTTEEEEEEEEESEECTCCCTTEEEEEETTSEEEEHHHHHHHHS--SS-SHHHH
T ss_pred ccCCCHHHHHHHHHHhCccccccccccccceeEEeecccccccCCCcceeEEEECCChHhHHHHHHHhhCCCCCCCCCCC
Confidence 9999999999999999887653322 222111111111223466789999999999999999999999999987
No 33
>cd05781 DNA_polB_B3_exo DEDDy 3'-5' exonuclease domain of Sulfurisphaera ohwakuensis DNA polymerase B3 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of archaeal proteins with similarity to Sulfurisphaera ohwakuensis DNA polymerase B3. B3 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B3 exhibits both polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Archaeal proteins that are involved in DNA replicatio
Probab=99.96 E-value=3.1e-28 Score=258.95 Aligned_cols=184 Identities=23% Similarity=0.393 Sum_probs=151.2
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~ 461 (1200)
|+|++|+|||||.++.+ +|+|.+|+|++|+++..++ . ..++ ...+.+|++||.+|+
T Consensus 1 p~l~~l~fDIEt~~~~g-fp~~~~d~Ii~Is~~~~~g-~-----~~~~-----------------~~~~~~E~~lL~~F~ 56 (188)
T cd05781 1 PDLKTLAFDIEVYSKYG-TPNPRRDPIIVISLATSNG-D-----VEFI-----------------LAEGLDDRKIIREFV 56 (188)
T ss_pred CCceEEEEEEEecCCCC-CCCCCCCCEEEEEEEeCCC-C-----EEEE-----------------EecCCCHHHHHHHHH
Confidence 78999999999997664 8999999999999876332 1 0111 123579999999999
Q ss_pred HHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcC
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNL 541 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L 541 (1200)
++|+++|||||+|||+.+||||||.+||+.+|++.. +||........ .....+.+.||+++|+|..+++..++
T Consensus 57 ~~i~~~dPd~i~gyN~~~FDlpyl~~Ra~~~gi~~~--~gr~~~~~~~~-----~~~~~~~i~Gr~~iDl~~~~~~~~~l 129 (188)
T cd05781 57 KYVKEYDPDIIVGYNSNAFDWPYLVERARVLGVKLD--VGRRGGSEPST-----GVYGHYSITGRLNVDLYDFAEEIPEV 129 (188)
T ss_pred HHHHHcCCCEEEecCCCcCcHHHHHHHHHHhCCCcc--cccCCCccccc-----CCcceEeeeeEEEEEhHHHHHhhCCC
Confidence 999999999999999999999999999999999863 67754321111 11335789999999999999999999
Q ss_pred CCCCHHHHHHHHcCC----CcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 542 QSYTFENIMYHVLHE----RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 542 ~SYsLe~Va~~vLg~----rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+|+|++||.+ ||. .+...++.++.++|.++ ..+.++++||++|+.+++.|+.++
T Consensus 130 ~~y~L~~Va~~-Lg~~k~~~k~~~~~~~i~~~~~~~--~~~~~l~~Y~~~D~~~t~~l~~~~ 188 (188)
T cd05781 130 KVKTLENVAEY-LGVMKKSERVLIEWYRIYEYWDDE--KKRDILLKYNRDDARSTYGLAEKL 188 (188)
T ss_pred CCCCHHHHHHH-HCCCccccccCCCHHHHHHHHcCc--ccHHHHHHHHHHHHHHHHHHHhhC
Confidence 99999999985 774 45678899999999875 348999999999999999998764
No 34
>cd05784 DNA_polB_II_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase II and similar bacterial family-B DNA polymerases. The 3'-5' exonuclease domain of Escherichia coli DNA polymerase II (Pol II) and similar bacterial proteins. Pol II is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain has a fundamental role in the proofreading activity of polII. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Pol II is involved in a variety of cellular activities, such as the repair of DNA damaged
Probab=99.96 E-value=8.4e-28 Score=256.35 Aligned_cols=188 Identities=23% Similarity=0.345 Sum_probs=149.5
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~ 461 (1200)
|+|++|||||||.+.+ +|.+|+... .. ...++++..+... .+..+..|.+|++||.+|+
T Consensus 1 p~l~~~~fDIE~~~~~---------~i~~i~~~~--~~-----~~~i~~~~~~~~~-----~~~~v~~~~~E~~lL~~f~ 59 (193)
T cd05784 1 PKLKVVSLDIETSMDG---------ELYSIGLYG--EG-----QERVLMVGDPEDD-----APDNIEWFADEKSLLLALI 59 (193)
T ss_pred CCccEEEEEeecCCCC---------CEEEEEeec--CC-----CCEEEEECCCCCC-----CCCEEEEECCHHHHHHHHH
Confidence 7899999999998532 899998532 11 1226666543321 2457899999999999999
Q ss_pred HHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh-hhc
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH-EVN 540 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~-el~ 540 (1200)
++|+++|||||+|||+++||||||.+||+.+|++. .+||.+....+... +......+.++||+++|+|..+|+ .++
T Consensus 60 ~~i~~~dPDvi~g~N~~~FD~~yl~~R~~~~~i~~--~~gR~~~~~~~~~~-g~~~~~~~~i~GR~~~D~~~~~k~~~~k 136 (193)
T cd05784 60 AWFAQYDPDIIIGWNVINFDLRLLQRRAEAHGLPL--RLGRGGSPLNWRQS-GKPGQGFLSLPGRVVLDGIDALKTATYH 136 (193)
T ss_pred HHHHhhCCCEEEECCCcCcCHHHHHHHHHHhCCCc--ccccCCCccccccC-CcCCcceEEEeeEEEEEhHHHHHHccCC
Confidence 99999999999999999999999999999999986 47876643222111 112244678999999999999987 579
Q ss_pred CCCCCHHHHHHHHcCCCcCCCC----hHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhh
Q psy5921 541 LQSYTFENIMYHVLHERIPLHS----WKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE 597 (1200)
Q Consensus 541 L~SYsLe~Va~~vLg~rk~~~s----~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~ 597 (1200)
++||+|++||+++||+++.++. +.++.++|.++ ..++++||++||.++++|++
T Consensus 137 l~sy~L~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~----~~~l~~Y~~~Da~L~l~L~~ 193 (193)
T cd05784 137 FESFSLENVAQELLGEGKLIHDVDDRGAEIERLFRED----KLALARYNLQDCELVWRIFE 193 (193)
T ss_pred CCcCCHHHHHHHHhCCCccccCcccCHHHHHHHHhhC----HHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999998776553 56899999865 46899999999999999974
No 35
>cd05779 DNA_polB_epsilon_exo DEDDy 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon, a family-B DNA polymerase. The 3'-5' exonuclease domain of eukaryotic DNA polymerase epsilon. DNA polymerase epsilon is a family-B DNA polymerase with a catalytic subunit that contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain. It is one of the three DNA-dependent type B DNA polymerases (alpha and delta are the other two) that have been identified as essential for nuclear DNA replication in eukaryotes. DNA polymerase epsilon plays a role in elongating the leading strand during DNA replication. It is also involved in DNA repair. The catalytic subunit contains both polymerase and 3'-5' exonuclease activities. The N-terminal exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. DNA polymerase epsilon also carries a unique
Probab=99.95 E-value=2e-27 Score=255.26 Aligned_cols=194 Identities=16% Similarity=0.176 Sum_probs=153.2
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEE-------EecCCCCCCcCCCCCeEEEEcCCHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGII-------LIGQESELPEVRTKPIQMHFVSNEKE 455 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~-------~v~~~~~~p~~~~~~~~V~~~~nEke 455 (1200)
+|++|||||||.++.+.+|+|..|+|++||+++...+.. ...+.+. ...++. .......+..+.+|++
T Consensus 1 ~lrilafDIE~~~~~~~fP~~~~D~Ii~IS~~~~~~g~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~E~~ 75 (204)
T cd05779 1 DPRVLAFDIETTKLPLKFPDAETDQIMMISYMIDGQGYL-IVNREIVSEDIEDFEYTPKP----EYEGPFKVFNEPDEKA 75 (204)
T ss_pred CceEEEEEEEecCCCCCCcCCCCCeEEEEEEEEecCCEE-EecccccccccccccccCCC----CCCCceEEecCCCHHH
Confidence 589999999999877789999999999999987654310 0000000 000110 0012356777899999
Q ss_pred HHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHH
Q psy5921 456 LFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLL 535 (1200)
Q Consensus 456 LL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~ 535 (1200)
||.+|+++|+++|||+|+|||+.+||||||.+||+.+|+.....+||.... ...+.+.||+++|+|..+
T Consensus 76 lL~~f~~~i~~~~Pd~i~gyN~~~FD~pyl~~R~~~~~~~~~~~~g~~~~~-----------~~~~~~~gr~~iDl~~~~ 144 (204)
T cd05779 76 LLQRFFEHIREVKPHIIVTYNGDFFDWPFVEARAAIHGLSMEEEIGFRKDS-----------EGEYKSRYIIHMDCFRWV 144 (204)
T ss_pred HHHHHHHHHHHhCCCEEEecCccccCHHHHHHHHHHhCCCchhhhCeEecC-----------CCeEEeccEEEEEhHHHH
Confidence 999999999999999999999999999999999999999876555542211 113467899999999999
Q ss_pred Hhhh--cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHh
Q psy5921 536 RHEV--NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLI 596 (1200)
Q Consensus 536 r~el--~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll 596 (1200)
++.. ...+|+|++||+++||+.|.++++.+|.++|+.+ ..++++||++||.+|+.|.
T Consensus 145 ~~~~~l~~~sysLd~Va~~~Lg~~K~~~~~~~I~~~~~~~----~~~l~~Y~~~D~~~T~~l~ 203 (204)
T cd05779 145 KRDSYLPQGSQGLKAVTKAKLGYDPVELDPEDMVPLARED----PQTLASYSVSDAVATYYLY 203 (204)
T ss_pred HHhhcCCCCCccHHHHHHHHhCCCcCcCCHHHHHHHHhCC----cHHHHhccHHHHHHHHHHh
Confidence 9854 4579999999999999999999999999999876 4689999999999999885
No 36
>cd05785 DNA_polB_like2_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=99.95 E-value=2.7e-27 Score=255.27 Aligned_cols=188 Identities=20% Similarity=0.217 Sum_probs=149.2
Q ss_pred cCCcceEEEEEEEeccCCCCC---CCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHH
Q psy5921 380 ENYYLTVLAVEIHAISRALLK---PDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKEL 456 (1200)
Q Consensus 380 ~~p~LtvlSlDIeT~t~~~l~---Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeL 456 (1200)
..|+|++|||||||.+.++.+ |++..|+|++|++...... ..++ ...+.+|++|
T Consensus 5 ~~~~lkilsfDIE~~~~~~~~~p~p~~~~d~Ii~Is~~~~~~~------~~~~-----------------~~~~~~E~~l 61 (207)
T cd05785 5 TFDDLRRLQLDIETYSLPGFFFSNPDRGDDRIIIVALRDNRGW------EEVL-----------------HAEDAAEKEL 61 (207)
T ss_pred CCCCceEEEEEEEecCCCCccCCCCCCCCCeEEEEecccCCCc------eeee-----------------ccCCCCHHHH
Confidence 358999999999999887654 6677899999997532211 0111 0126899999
Q ss_pred HHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccc---cCcccc--ccceeeecceEEeeh
Q psy5921 457 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRN---SSRDEV--KNTQLQMPGRIVINL 531 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~---~s~~~~--~~~~~~i~GRlvlDl 531 (1200)
|.+|+++|+++|||||+|||+.+||||||.+||+.+|++.. |||........ ++.+.+ ....+.+.||+++|+
T Consensus 62 L~~f~~~i~~~dPdii~g~N~~~FD~pyl~~R~~~~~~~~~--~~r~~~~~~~~~~~~~~~~~~~~~~~~~i~Gr~~iDl 139 (207)
T cd05785 62 LEELVAIIRERDPDVIEGHNIFRFDLPYLRRRCRRHGVPLA--IGRDGSIPRQRPSRFRFAERLIDYPRYDIPGRHVIDT 139 (207)
T ss_pred HHHHHHHHHHhCCCEEeccCCcccCHHHHHHHHHHhCCCcc--cccCCCcceEeeccccccccccccceEEecCEEEEEc
Confidence 99999999999999999999999999999999999999863 66654322111 111111 235678999999999
Q ss_pred HHHHHh----hhcCCCCCHHHHHHHH--cCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHh
Q psy5921 532 WRLLRH----EVNLQSYTFENIMYHV--LHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLI 596 (1200)
Q Consensus 532 ~r~~r~----el~L~SYsLe~Va~~v--Lg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll 596 (1200)
|..+++ ..++.+|+|++||+++ +++.+.++++.++.++|+++ ..++++||++||.+|++|.
T Consensus 140 ~~~~~~~~~~~~~l~sysL~~Va~~~g~~~~~k~d~~~~~I~~l~~~~----~~~l~~Y~~~D~~~t~~l~ 206 (207)
T cd05785 140 YFLVQLFDVSSRDLPSYGLKAVAKHFGLASPDRTYIDGRQIAEVWRSD----PARLLAYALDDVRETEGLA 206 (207)
T ss_pred HHHHHhhcccccCCCCCCHHHHHHHhcccCCCcCCCCHHHHHHHHhcC----HHHHHHHHHHHHHHHHHhh
Confidence 999986 4589999999999997 56678888999999999876 5799999999999999885
No 37
>cd05160 DEDDy_DNA_polB_exo DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. The 3'-5' exonuclease domain of family-B DNA polymerases. This domain has a fundamental role in reducing polymerase errors and is involved in proofreading activity. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The exonuclease domain of family B polymerase also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Members include Escherichia coli DNA polymerase II, some eubacterial phage DNA polymerases, nuclear replicative
Probab=99.95 E-value=9.4e-27 Score=249.36 Aligned_cols=197 Identities=25% Similarity=0.373 Sum_probs=155.9
Q ss_pred EEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEe--cCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHH
Q psy5921 386 VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILI--GQESELPEVRTKPIQMHFVSNEKELFSIFIEN 463 (1200)
Q Consensus 386 vlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v--~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~ 463 (1200)
+++|||||++..+ +|+|..|+|++|+++...++.. . ++.. .+...... ...+..|..+++|++||.+|+++
T Consensus 1 v~~~DIEt~~~~~-~p~~~~d~Ii~I~~~~~~~g~~----~-~~~~~~~~~~~~~~-~i~~~~v~~~~~E~~lL~~f~~~ 73 (199)
T cd05160 1 VLSFDIETTPPVG-GPEPDRDPIICITYADSFDGVK----V-VFLLKTSTVGDDIE-FIDGIEVEYFADEKELLKRFFDI 73 (199)
T ss_pred CccEEEeecCCCC-CcCCCCCCEEEEEEEEeeCCce----e-eEEEeecccCCcCC-CCCCceEEEeCCHHHHHHHHHHH
Confidence 5899999998764 6899999999999887633321 1 1111 11110000 12357899999999999999999
Q ss_pred HhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcCCC
Q psy5921 464 VRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS 543 (1200)
Q Consensus 464 I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~S 543 (1200)
++.+|||||+|||+.+||||||.+|+..+|++.|..++|....... ........+.||+++|+|..+|+..++.+
T Consensus 74 i~~~dpdiivg~N~~~FD~~~L~~R~~~~~~~~~~~~~r~~~~~~~-----~~~~~~~~~~gr~~~D~~~~~r~~~~l~s 148 (199)
T cd05160 74 IREYDPDILTGYNIDDFDLPYLLKRAEALGIKLTDGIYRRSGGEKS-----SGSTERIAVKGRVVFDLLAAYKRDFKLKS 148 (199)
T ss_pred HHhcCCCEEEEeccCCCcHHHHHHHHHHhCCCcccccccccCCCcc-----CCcccceeeeccEeeehHHHHHHhcCccc
Confidence 9999999999999999999999999999999986445554332211 12345678999999999999999989999
Q ss_pred CCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhh
Q psy5921 544 YTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE 597 (1200)
Q Consensus 544 YsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~ 597 (1200)
|+|++||+++||.+++++++..+.+|+.. ..+.++++||++||.++++|+.
T Consensus 149 y~L~~v~~~~l~~~k~~~~~~~~~~~~~~---~~~~~~~~Y~~~D~~~~~~l~~ 199 (199)
T cd05160 149 YTLDAVAEELLGEGKEKVDGEIIEDAEWE---EDPERLIEYNLKDAELTLQILE 199 (199)
T ss_pred CCHHHHHHHHhCCCCCcCCHHHHhhccCc---chHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999885332 3489999999999999999873
No 38
>cd05783 DNA_polB_B1_exo DEDDy 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal family-B DNA polymerases. The 3'-5' exonuclease domain of Sulfolobus solfataricus DNA polymerase B1 and similar archaeal proteins. B1 is a family-B DNA polymerase. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. B1displays thermostable polymerase and 3'-5' exonuclease activities. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and are involved in metal binding and catalysis. The exonuclease domain of family-B polymerases also contains a beta hairpin structure that plays an important role in active site switching in the event of nucleotide misincorporation. Family-B DNA polymerases from thermophilic archaea are uniq
Probab=99.91 E-value=1.4e-23 Score=225.95 Aligned_cols=185 Identities=17% Similarity=0.220 Sum_probs=142.5
Q ss_pred CCcceEEEEEEEeccCC-CCCCCCCC--CcEEEEEEEecCCCCCCCceEEEEEecCCCCC--CcCCCCCeEEEEcCCHHH
Q psy5921 381 NYYLTVLAVEIHAISRA-LLKPDPAY--DEVKAIFYYLYTCPPEEDRKVGIILIGQESEL--PEVRTKPIQMHFVSNEKE 455 (1200)
Q Consensus 381 ~p~LtvlSlDIeT~t~~-~l~Pdp~~--DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~--p~~~~~~~~V~~~~nEke 455 (1200)
.|+|++|||||||.+.. +.||+|++ |+|++|++. .+++ ...++++...... +.....+..|..|.+|++
T Consensus 2 ~P~lrilsfDIE~~~~~~~~fP~~~~~~d~IisI~~~-~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~E~~ 75 (204)
T cd05783 2 IPKLKRIAIDIEVYTPIKGRIPDPKTAEYPVISVALA-GSDG-----LKRVLVLKREGVEGLEGLLPEGAEVEFFDSEKE 75 (204)
T ss_pred CCCceEEEEEEEECCCCCCCCcCCCCCCCeEEEEEEc-CCCC-----CcEEEEEecCCcccccccCCCCCeEEecCCHHH
Confidence 58999999999999865 67899998 799999864 2122 1235555432111 000123467899999999
Q ss_pred HHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCc---ccccccccccccccCccccccceeeecceEEeehH
Q psy5921 456 LFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLN---QELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLW 532 (1200)
Q Consensus 456 LL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~---~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~ 532 (1200)
||.+|+++|+++ |+|+|||+.+||||||.+||+.+|++.. ..++| ....+.||+++|++
T Consensus 76 lL~~F~~~i~~~--~~iig~N~~~FDlpyl~~R~~~~gi~~~~~~~~~~~----------------~~~~~~g~~~iDl~ 137 (204)
T cd05783 76 LIREAFKIISEY--PIVLTFNGDNFDLPYLYNRALKLGIPKEEIPIYLKR----------------DYATLKHGIHIDLY 137 (204)
T ss_pred HHHHHHHHHhcC--CEEEEeCCCCcCHHHHHHHHHHhCCChhhCceeecC----------------CceeccCcEEeECH
Confidence 999999999987 6899999999999999999999998732 11222 13468899999999
Q ss_pred HHHHhh-h-------cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhh
Q psy5921 533 RLLRHE-V-------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE 597 (1200)
Q Consensus 533 r~~r~e-l-------~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~ 597 (1200)
+.++.. + ++.+|+|++||+++||+.|.+++ .++.++ .+.++++||++||.++++|+.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~L~~Va~~~lg~~K~~~~-~~i~~~-------~~~~l~~Y~~~D~~lt~~L~~ 202 (204)
T cd05783 138 KFFSNRAIQVYAFGNKYREYTLDAVAKALLGEGKVELE-KNISEL-------NLYELAEYNYRDAELTLELTT 202 (204)
T ss_pred HHhhccchhhhhhccccccCcHHHHHHHhcCCCcccCC-chhhhh-------cHHHHHHhhHHHHHHHHHHhc
Confidence 987642 1 57899999999999999888886 556554 378999999999999999874
No 39
>PHA02563 DNA polymerase; Provisional
Probab=99.85 E-value=3.3e-20 Score=225.29 Aligned_cols=403 Identities=16% Similarity=0.145 Sum_probs=224.4
Q ss_pred HHHHHHHHh--h--hCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEE--ee
Q psy5921 457 FSIFIENVR--Q--WDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIV--IN 530 (1200)
Q Consensus 457 L~~F~~~I~--~--~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlv--lD 530 (1200)
+..|+.++. . .+.=+|.-|| -.||..||+.-...++.+.--.+ |.+... .....+...||+. .+
T Consensus 50 ~~~f~~~i~~~~~k~~~~~vYfHN-~~FD~~Fil~~L~~~~~~~~~e~-~~~~~~--------~~~~~i~~~g~~~~i~~ 119 (630)
T PHA02563 50 FDEFLQWIEDTTYKETECIIYFHN-LKFDGSFILKWLLRNGFNWILEL-RVRSSK--------NFDTTIFINGRWYTITD 119 (630)
T ss_pred HHHHHHHHhhccccccceEEEEec-CCccHHHHHHHHHhhcccccccc-cccCcc--------cccceEeeCCEEEEEEE
Confidence 446777766 2 2233677899 89999999998887775432110 111100 0112233445543 01
Q ss_pred hHHHHHhhhcCCCCCHHHHHHHH-cCCCcCCCCh--HhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHH
Q psy5921 531 LWRLLRHEVNLQSYTFENIMYHV-LHERIPLHSW--KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSE 607 (1200)
Q Consensus 531 l~r~~r~el~L~SYsLe~Va~~v-Lg~rk~~~s~--~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~e 607 (1200)
.+..++.++.+-.-+|+++|..+ +...+...++ .....+.-..-...+...++|+..|+..++.++...
T Consensus 120 ~~~~f~DS~~llp~~L~~l~~~F~~~~~k~~~d~~~~~~~~y~~~~~~~~~~e~~~Yl~~D~~il~~~~~i~-------- 191 (630)
T PHA02563 120 SFMKFRDSLKLLPFSLEKLKKDFGLTILKKDIDLNKERPVGYEFTTFEKLDPEELEYIHNDCVIIAGMLDIH-------- 191 (630)
T ss_pred EEEEEEehHhhhhHHHHHHHHHhCcccccCCcCccccccccceecccccccHHHHHHHHHHHHHHHHHHHHH--------
Confidence 11223344555566778888777 3323322221 111001100001235678999999997777665332
Q ss_pred HHHhhcccchhhccCcchhhhhhhhhhccc-cccccccCCChhhhcccCCCCCCCeee---ccCCCcccCCeEEeecccc
Q psy5921 608 MARLFGIQFYEVLSRGSQFRVESIMLRLSR-LNNFVAVSPSIKQRAHMRAPESLPLIL---EPESRLYTDPIIVLDFQSL 683 (1200)
Q Consensus 608 larl~Gi~~~~vl~rGsq~rvEslLlr~a~-~~~~I~p~ps~~~~~~~~~~~~GglVl---eP~~G~Y~~pV~vLDF~SL 683 (1200)
.+.++ .+.-..+.+.++--.++..-+ ....+ |-++..-....+..+.||.|+ ++..|++.+ +.++|++||
T Consensus 192 ~~~~f----~~~TisS~a~~ifk~~~~~~~~~~~~~-p~l~~~~~~fIr~sY~GGr~~~~~~~~~~~~~~-~~~yDvnSl 265 (630)
T PHA02563 192 FSEGF----TRFTTGSDAMTVYKELYQKIKIKYTHF-PILDLGFDDFIRKFYRGGRTWYNPKYIGKLIEE-GYVYDVNSL 265 (630)
T ss_pred HHhcc----ccCCcchHHHHHHHHHHhhcccccccC-CCCCchHHHHHHHheeCceeecccccccccccc-ccccccccc
Confidence 11211 111111223334333332111 11222 223332222345678899998 899999976 779999999
Q ss_pred cHHHHHHcCCCccccCcc---cccCCC--C--CCCCCccc--ccccChH----HHhh-----------------------
Q psy5921 684 YPSVIIAYNYCFSTCLGR---VEHLGV--S--DSFPFGCI--DLNVSIR----SLKK----------------------- 727 (1200)
Q Consensus 684 YPSIIiayNIC~tT~l~~---~~~~~~--~--~~~~~g~~--~~~~~~~----~~~~----------------------- 727 (1200)
|||+|..+++|+.+..-. ...... . ..+-+|.. ...+|.+ .+..
T Consensus 266 YPsaM~~~~~P~g~p~~~~~k~~~~~~~~~~i~~~~~~f~~~ev~~p~~~~i~Ik~~~~~~~~~i~p~g~~~g~~~~~E~ 345 (630)
T PHA02563 266 YPYVMYNAKLPYGEPFYEKGKPAELKPDPLYIYNYGALFKLKKGYVPDDMLIQIKSNLDFNGRLVLKVGIVKYVNSGNEY 345 (630)
T ss_pred cHHHHhhccCCCCCceeeccCcccccccccccccceEEEEEEEccCCCccccceeccccCCCceeeecccEeeEecCceE
Confidence 999999999999864311 000000 0 00000100 0001100 0000
Q ss_pred ------------c-c-CcE-eeCC-CceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhccc
Q psy5921 728 ------------L-Q-QKL-TISP-SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKL 791 (1200)
Q Consensus 728 ------------l-~-d~i-~~sP-nG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKl 791 (1200)
+ + .++ .+.. .|+.|-+ ..+++...+..+.+.|...|+.- + .+...|+
T Consensus 346 ~~~~~~~i~le~~ik~y~~~~i~v~~Gy~fe~---~~~~FkeyI~~lY~iK~~~K~~~------~--------~~~i~KL 408 (630)
T PHA02563 346 VDLNLNNLDLELEITHYDAFNEEVESGVVFEC---ETGLFRDFIDHFYEIKTNSKGAK------K--------QNMLAKL 408 (630)
T ss_pred EEEEeceEEHHHhhhccceeEEEEEEEEEEcc---cCchHHHHHHHHHHHHhccccCc------c--------HHHHHHH
Confidence 0 0 000 0011 3444543 36888999999999888876521 1 1368999
Q ss_pred ccccccCccccccC--CCC--------------------Cc-HHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCC
Q psy5921 792 IANVTYGYTAANFS--GRM--------------------PC-VEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTD 848 (1200)
Q Consensus 792 laNS~YGy~ga~fs--gR~--------------------~~-~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTD 848 (1200)
++||.||-+|.+-. ++. +. +.+|++||+.||.+|..+++.+++ . |+|||||
T Consensus 409 lLNSLYGKfg~~p~~~~~~~~l~~~~~l~~~~~~~~~~~~~yv~iAa~ITa~aR~~m~~~~~~~~~---~---v~Y~DTD 482 (630)
T PHA02563 409 MLNSLYGKFALNPDNTGKVPYLDDNGRLDLISNGEENKEPNYIPIAAFITARARSNLLSALQYLYE---K---FIYCDTD 482 (630)
T ss_pred HHhcccchhhcCccccCceeeecccceeeeecCCccccccccchHHHHHHHHHHHHHHHHHHHhhc---c---EEEECCc
Confidence 99999998886421 122 11 469999999999999999998875 2 9999999
Q ss_pred ceeEecCCCCHHHHHHHHHHHHHHHHccCCCcee---eeeeceechhhccccceeEEEEeecCCCCCCcEEEEeee
Q psy5921 849 SMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVK---LKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIE 921 (1200)
Q Consensus 849 SvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~---LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie 921 (1200)
||||.-+.... +.+.+..+.+ +++|.++...+++++|+|+.+..+. +.+-.+++||++
T Consensus 483 Si~v~~~~~~~-------------L~~~~i~~~eLGk~k~E~~~~~~~fl~~K~Y~l~~~d~--~~~i~ik~KGi~ 543 (630)
T PHA02563 483 SIHLEGAETPK-------------LPKDMIDPKELGKWDHEGEFIKAKYLRPKKYALYAEEV--NGKLKIKCAGMP 543 (630)
T ss_pred eEEEecCcccc-------------CchhhCChhHhcceeccceeeEEEEEeccEEEEEecCC--CceEEEEeCCCC
Confidence 99999664321 1111112233 4899999999999999997665432 233457889984
No 40
>cd05782 DNA_polB_like1_exo Uncharacterized bacterial subgroup of the DEDDy 3'-5' exonuclease domain of family-B DNA polymerases. A subfamily of the 3'-5' exonuclease domain of family-B DNA polymerases. This subfamily is composed of uncharacterized bacterial family-B DNA polymerases. Family-B DNA polymerases contain an N-terminal DEDDy DnaQ-like exonuclease domain in the same polypeptide chain as the polymerase domain, similar to family-A DNA polymerases. This exonuclease domain contains three sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are involved in metal binding and catalysis. The exonuclease domain of family-B DNA polymerases has a fundamental role in proofreading activity. It contains a beta hairpin structure that plays an important role in active site switching in the event of a nucleotide misincorporation. Family-B DNA polymerases are predominantly involved in DNA replication and DNA repair.
Probab=99.79 E-value=2e-18 Score=186.77 Aligned_cols=164 Identities=13% Similarity=0.016 Sum_probs=127.5
Q ss_pred CCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCccc
Q psy5921 400 KPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIET 479 (1200)
Q Consensus 400 ~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~ 479 (1200)
++.+..++|++||++..+... +.+.+. -..+.+|++||.+|+++|++++| +|+|||+.+
T Consensus 45 ~l~~~~~~Iv~Is~~~~~~~~------~~~~~~--------------~~~~~~E~elL~~F~~~i~~~~p-~lv~yNg~~ 103 (208)
T cd05782 45 FLPLPFHKVVSISALYRDDDG------GFLKVR--------------TLDGADEKELLEDFFQLIEKKNP-RLVSFNGRG 103 (208)
T ss_pred CCccccCceEEEEEEEEecCC------CeEEEe--------------ecCCCCHHHHHHHHHHHHHHhCC-EEEecCCCc
Confidence 556788999999988752111 011111 11357999999999999999988 899999999
Q ss_pred ccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcCCCCCHHHHHHHHcCCCcC
Q psy5921 480 LSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP 559 (1200)
Q Consensus 480 FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~ 559 (1200)
||||||..||..||++....+++..... .....+.|| |+|++..++...++.+|+|++||..+...+|.
T Consensus 104 FDlP~L~~Ra~~~gi~~p~~~~~~~~~~----------~y~~r~~~~-h~DL~~~~~~~~~~~~~~L~~va~~lG~~~K~ 172 (208)
T cd05782 104 FDLPVLHLRALIHGVSAPAYFDLGNKDW----------NYRNRYSER-HLDLMDLLAFYGARARASLDLLAKLLGIPGKM 172 (208)
T ss_pred CCHHHHHHHHHHhCCCCccccCcccchh----------hccCcCCCC-cccHHHHHhccCccCCCCHHHHHHHhCCCCCc
Confidence 9999999999999997654344321100 011134688 99999999876678999999999876557899
Q ss_pred CCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhc
Q psy5921 560 LHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQ 598 (1200)
Q Consensus 560 ~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~k 598 (1200)
++++.++.++|..++ +.++++||+.||..|+.|+.+
T Consensus 173 d~~G~~v~~~y~~g~---~~~I~~Yc~~Dv~~t~~l~lr 208 (208)
T cd05782 173 DVDGSQVWELYAEGK---LDEIAEYCETDVLNTYLLYLR 208 (208)
T ss_pred CCCHHHHHHHHHcCC---hHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999874 789999999999999998753
No 41
>PF10108 DNA_pol_B_exo2: Predicted 3'-5' exonuclease related to the exonuclease domain of PolB; InterPro: IPR019288 This entry represents various prokaryotic 3'-5' exonucleases and hypothetical proteins.
Probab=99.44 E-value=2.9e-12 Score=137.34 Aligned_cols=171 Identities=12% Similarity=0.074 Sum_probs=123.6
Q ss_pred CCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCccc
Q psy5921 400 KPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIET 479 (1200)
Q Consensus 400 ~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~ 479 (1200)
|+......|+|||+.+..+.. . + .+...+ ....+|++||..|++.|.++.| .+||||+.+
T Consensus 3 Fl~~~f~kIV~Is~~~~~~~~---~---~-~v~s~~------------~~~~~E~~lL~~F~~~~~~~~p-~LVs~NG~~ 62 (209)
T PF10108_consen 3 FLPLPFHKIVCISVVYADDDG---Q---F-KVKSLG------------GPDDDEKELLQDFFDLVEKYNP-QLVSFNGRG 62 (209)
T ss_pred CCcccCCCeEEEEEEEEecCC---c---E-EEEecc------------CCCCCHHHHHHHHHHHHHhCCC-eEEecCCcc
Confidence 444567899999998544321 1 1 111111 0124799999999999999987 478999999
Q ss_pred ccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcCCCCCHHHHHHHHcCCCcC
Q psy5921 480 LSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP 559 (1200)
Q Consensus 480 FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~ 559 (1200)
||+|||..||..||++....+.+-. +++. +......-+ |+|++..+...=.-.+.+|+.+|..+-=..|.
T Consensus 63 FDlP~L~~Ral~~gi~~p~~~~~~~--k~We-------nY~~Ry~~~-H~DLmd~l~~~g~~~~~sLd~la~~lgiPgK~ 132 (209)
T PF10108_consen 63 FDLPVLCRRALIHGISAPRYLDIGN--KPWE-------NYRNRYSER-HLDLMDLLSFYGAKARTSLDELAALLGIPGKD 132 (209)
T ss_pred CCHHHHHHHHHHhCCCCchhhhcCC--CCcc-------ccccccCcc-cccHHHHHhccCccccCCHHHHHHHcCCCCCC
Confidence 9999999999999998764443321 2221 111122234 99999987654345678999998754325689
Q ss_pred CCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhh
Q psy5921 560 LHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIG 603 (1200)
Q Consensus 560 ~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~ 603 (1200)
+.++.++.++|..++ ..++..||..||..|..|+.++..+.
T Consensus 133 ~idGs~V~~~y~~g~---i~~I~~YCe~DVl~T~~lylR~~~~~ 173 (209)
T PF10108_consen 133 DIDGSQVAELYQEGD---IDEIREYCEKDVLNTYLLYLRFELLR 173 (209)
T ss_pred CCCHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 999999999998775 78999999999999999998886543
No 42
>PF14260 zf-C4pol: C4-type zinc-finger of DNA polymerase delta
Probab=99.27 E-value=5.9e-12 Score=114.14 Aligned_cols=71 Identities=28% Similarity=0.681 Sum_probs=64.8
Q ss_pred cccCCcccccCC-CCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHcccCcC-CCCCccccCCCCCceeEee
Q psy5921 1107 CVCCNQMTQNNK-GVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG-RSTSNDCISLDCPVLYRKT 1177 (1200)
Q Consensus 1107 C~~C~~~~~~~~-~~C~~C~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~~-~~~~~~C~~~dC~v~y~~~ 1177 (1200)
|++||+.+.... ++|++|..+++.+++.++.+++.+|+++..+|.+|++|++ ....+.|.|.||||||+|+
T Consensus 1 C~~C~~~~~~~~~~lC~~C~~~~~~~~~~l~~~~~~~E~~~~~l~~iC~~C~~~~~~~~~C~s~DCpV~Y~R~ 73 (73)
T PF14260_consen 1 CLVCGAKTQEGESPLCSNCRSDPQQTIYNLLSRLRELERRFNELWTICQSCSGSLHEEIECDSLDCPVFYERV 73 (73)
T ss_pred CCCCCCcCCCCCCCcCcccCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCCCcccCCCCCcceeeC
Confidence 899999765544 8999999999999999999999999999999999999995 4678999999999999985
No 43
>PF13482 RNase_H_2: RNase_H superfamily; PDB: 1TKD_A 1TK5_A 2AJQ_F 1T8E_A 1T7P_A 1SKR_A 1X9W_A 1TK8_A 1TK0_A 1SL2_A ....
Probab=99.03 E-value=1.5e-09 Score=112.79 Aligned_cols=158 Identities=20% Similarity=0.119 Sum_probs=93.2
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQ 466 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~ 466 (1200)
+.|||||++ +. |..+.|++|+++..++..... +.-.. ..-.+|.+.+..+++.+.+
T Consensus 1 l~~DIET~G---l~--~~~~~i~liG~~~~~~~~~~~----~~~~~---------------~~~~~ee~~~~~~~~~l~~ 56 (164)
T PF13482_consen 1 LFFDIETTG---LS--PDNDTIYLIGVADFDDDEIIT----FIQWF---------------AEDPDEEEIILEFFELLDE 56 (164)
T ss_dssp --EEEEESS----G--G-G---EEEEEEE-ETTTTE-----EEEE----------------GGGHHHHHHHHH--HHHHT
T ss_pred CcEEecCCC---CC--CCCCCEEEEEEEEeCCCceEE----eeHhh---------------ccCcHHHHHHHHHHHHHhc
Confidence 469999994 64 455779999988754432100 00000 0012455555555577776
Q ss_pred hCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcCCCCCH
Q psy5921 467 WDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTF 546 (1200)
Q Consensus 467 ~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsL 546 (1200)
. |.++|||+.+||+|+|.+|+..++++. ..-++|++..+++... .+|+|
T Consensus 57 ~--~~iv~yng~~FD~p~L~~~~~~~~~~~----------------------------~~~~iDl~~~~~~~~~-~~~~L 105 (164)
T PF13482_consen 57 A--DNIVTYNGKNFDIPFLKRRAKRYGLPP----------------------------PFNHIDLLKIIKKHFL-ESYSL 105 (164)
T ss_dssp T----EEESSTTTTHHHHHHHHH-HHHH------------------------------GGGEEEHHHHHT-TTS-CCTT-
T ss_pred C--CeEEEEeCcccCHHHHHHHHHHcCCCc----------------------------ccchhhHHHHHHhccC-CCCCH
Confidence 6 889999999999999999997777652 1227899999986544 99999
Q ss_pred HHHHHHHcCCCc-CCCChHhHHHHHhc----CCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 547 ENIMYHVLHERI-PLHSWKLLTCWWEH----RTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 547 e~Va~~vLg~rk-~~~s~~~L~~~~~~----~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+|+..+...+. +..++.++..+|.. ++...+..++.||..||..+.+|...|
T Consensus 106 k~ve~~lg~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~i~~yN~~Dv~~~~~L~~~l 163 (164)
T PF13482_consen 106 KNVEKFLGIERRDDDISGSESVKLYKEYLETGDPEALEEILEYNEDDVRATRRLYEWL 163 (164)
T ss_dssp -SHHH-----------HHHHHHHHHH---TTGGTS--HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccccccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999998544555 67888888887765 334568899999999999999999876
No 44
>COG3359 Predicted exonuclease [DNA replication, recombination, and repair]
Probab=98.60 E-value=5.3e-07 Score=97.32 Aligned_cols=162 Identities=14% Similarity=0.026 Sum_probs=114.5
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIE 462 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~ 462 (1200)
.-.+++|||||++ + ++..+.|..++.+.-.+. .+.|+.... .--+.|..+|+.|..
T Consensus 97 ~e~~~FFDiETTG---L--~~ag~~I~~~g~a~~~~~--------~~~Vrq~~l-----------p~p~~E~avle~fl~ 152 (278)
T COG3359 97 AEDVAFFDIETTG---L--DRAGNTITLVGGARGVDD--------TMHVRQHFL-----------PAPEEEVAVLENFLH 152 (278)
T ss_pred ccceEEEeeeccc---c--CCCCCeEEEEEEEEccCc--------eEEEEeecC-----------CCcchhhHHHHHHhc
Confidence 4578999999995 4 236788888876543221 334443211 112589999999987
Q ss_pred HHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh--c
Q psy5921 463 NVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV--N 540 (1200)
Q Consensus 463 ~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el--~ 540 (1200)
.+ |-.+++.||+..||||||. |+....+++. .-+-++|++..+|+.. .
T Consensus 153 ~~---~~~~lvsfNGkaFD~Pfik-R~v~~~~el~--------------------------l~~~H~DL~h~~RRlwk~~ 202 (278)
T COG3359 153 DP---DFNMLVSFNGKAFDIPFIK-RMVRDRLELS--------------------------LEFGHFDLYHPSRRLWKHL 202 (278)
T ss_pred CC---CcceEEEecCcccCcHHHH-HHHhcccccC--------------------------ccccchhhhhhhhhhhhcc
Confidence 66 5579999999999999999 8777666643 1334899999999864 5
Q ss_pred CCCCCHHHHHHHHcCCCc-CC---CChHhHHH-HHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 541 LQSYTFENIMYHVLHERI-PL---HSWKLLTC-WWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 541 L~SYsLe~Va~~vLg~rk-~~---~s~~~L~~-~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
|...+|.+|-+ +||.+. ++ +..-++.+ |.+.+++..+..++.||..|+.....|+..+
T Consensus 203 l~~c~Lk~VEr-~LGi~R~edtdG~~~p~lyr~~~~~~dp~ll~~l~~hN~eDvlnL~~i~~h~ 265 (278)
T COG3359 203 LPRCGLKTVER-ILGIRREEDTDGYDGPELYRLYRRYGDPGLLDGLVLHNREDVLNLPTIIKHV 265 (278)
T ss_pred CCCCChhhHHH-HhCccccccCCCcchHHHHHHHHHcCCHHHHHHHHHccHHHHHhHHHHHHHH
Confidence 89999999977 998433 32 33344444 3344555667899999999998877776654
No 45
>PF08996 zf-DNA_Pol: DNA Polymerase alpha zinc finger; InterPro: IPR015088 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The DNA Polymerase alpha zinc finger domain adopts an alpha-helix-like structure, followed by three turns, all of which involve proline. The resulting motif is a helix-turn-helix motif, in contrast to other zinc finger domains, which show anti-parallel sheet and helix conformation. Zinc binding occurs due to the presence of four cysteine residues positioned to bind the metal centre in a tetrahedral coordination geometry. The function of this domain is uncertain: it has been proposed that the zinc finger motif may be an essential part of the DNA binding domain []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0001882 nucleoside binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3FLO_D 1N5G_A 1K0P_A 1K18_A.
Probab=98.46 E-value=1e-07 Score=102.04 Aligned_cols=94 Identities=23% Similarity=0.360 Sum_probs=60.0
Q ss_pred ccccccCCccccc------------CCCC-Ccccccchh--hhHHHHHHHHHHHHHHHHHHHHHcc--cCcCCCCCcc--
Q psy5921 1104 SVNCVCCNQMTQN------------NKGV-CDACLNQTQ--LLGTCLYYKIQAWQRSQDQVNKVCT--TCVGRSTSND-- 1164 (1200)
Q Consensus 1104 ~~~C~~C~~~~~~------------~~~~-C~~C~~~~~--~~~~~~~~~~~~~e~~~~~~~~~C~--~C~~~~~~~~-- 1164 (1200)
.++|+.|++++.. ..++ |++|..... .....+...++...++|+.+|++|+ +|+++||++.
T Consensus 18 ~~~C~~C~~~~~f~g~~~~~~~~~~~~~~~C~~C~~~~~~~~l~Nql~l~iR~~i~~YY~gwl~Cdd~~C~~~TR~~~~~ 97 (188)
T PF08996_consen 18 KLTCPSCGTEFEFPGVFEEDGDDVSPSGLQCPNCSTPLSPASLVNQLELQIREHISRYYEGWLVCDDPTCGNRTRQLSLY 97 (188)
T ss_dssp EEE-TTT--EEEE-SSS--SSEEEETTEEEETTT--B--HHHHHHHHHHHHHHHHHHHHH--CCCCTCCCHHCCCSTTST
T ss_pred EeECCCCCCCccccccccCCccccccCcCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHhCceeCcccccCcccccccC
Confidence 5899999997521 2233 999998532 2333444556677788889999998 6999999874
Q ss_pred ---cc-CCCCC--ceeEeecchhhhhhHHHHHHHHHhhhc
Q psy5921 1165 ---CI-SLDCP--VLYRKTQITRDLDQLSYVLSLCDSHLA 1198 (1200)
Q Consensus 1165 ---C~-~~dC~--v~y~~~~~~~~~~~~~~~~~l~~~~~~ 1198 (1200)
|. .++|. |.++++..+ +|+||.||+.|||..-|
T Consensus 98 ~~rC~~~~~C~G~m~~eyse~~-LY~QL~yf~~LFD~~~a 136 (188)
T PF08996_consen 98 GKRCPGAPGCKGKMRREYSEKD-LYNQLCYFRSLFDVDKA 136 (188)
T ss_dssp TTCST-STT-HHCCCCSS-HHH-HHHHHHHHHHHT-HHHH
T ss_pred CCCCCCcccccceeeeeecHHH-HHHHHHHHHHHhChHHH
Confidence 44 44444 788888764 99999999999998754
No 46
>PHA02735 putative DNA polymerase type B; Provisional
Probab=97.84 E-value=0.00019 Score=82.44 Aligned_cols=134 Identities=12% Similarity=-0.001 Sum_probs=77.0
Q ss_pred CHHHHHHHHcCCCcC--CCChHhH--HHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhc
Q psy5921 545 TFENIMYHVLHERIP--LHSWKLL--TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVL 620 (1200)
Q Consensus 545 sLe~Va~~vLg~rk~--~~s~~~L--~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl 620 (1200)
+|++.+..-||+.+. -++.... .+|..++ ...++.|.-.|+.++..|...+ ...|.-..+|+.+-+
T Consensus 170 sldna~~ewlge~ka~dgid~~~f~~k~yi~~n----~~dilkyak~da~l~~dl~~e~------~n~~e~ldipmgrp~ 239 (716)
T PHA02735 170 SLDNAAEEWLGENKAKDGIDAGKFDAKEYIKDN----FDDILKYAKIDAELTQDLAIEA------TNEAEELDIPMGRPF 239 (716)
T ss_pred HHHhHHHHHhccccccccccccccchHHHHhhh----HHHHHHHHhhhHHHHHHHHHHH------hhhHhhcCCccCCCc
Confidence 589999999997652 2221111 1232222 5678999999999998886554 222333345555544
Q ss_pred cCcchhhhhhhhhhccccccccccCCChhhh--c-ccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccc
Q psy5921 621 SRGSQFRVESIMLRLSRLNNFVAVSPSIKQR--A-HMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697 (1200)
Q Consensus 621 ~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~--~-~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT 697 (1200)
+.| +.-+..|-..... .|+.... + -.+..|+||.+=--++|=+-. |+.-|.||+||+||...= .+.|
T Consensus 240 stg--yla~~yl~~~~~e------kp~lg~~~ma~~~wEsYyGGrfeV~KrgnvGE-v~~pDINSaYPaim~dlP-DpKT 309 (716)
T PHA02735 240 STG--YLAAEYLDANLEE------KPGLGNEAMAKLAWESYAGGRFEVFKRGNVGE-VAAPDINSAYPAILADLP-DPKT 309 (716)
T ss_pred ccc--hhhHHHHhccccc------CCCCChHHHHHHHHHhhcCCceEEeccCccce-eeeccccccchHHHHhCC-CCcc
Confidence 332 3333333221111 1221100 0 124567788765556676655 999999999999999932 4556
Q ss_pred c
Q psy5921 698 C 698 (1200)
Q Consensus 698 ~ 698 (1200)
+
T Consensus 310 l 310 (716)
T PHA02735 310 L 310 (716)
T ss_pred c
Confidence 4
No 47
>PRK06309 DNA polymerase III subunit epsilon; Validated
Probab=97.81 E-value=0.00032 Score=77.80 Aligned_cols=154 Identities=14% Similarity=0.112 Sum_probs=101.3
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-----CCCeEEEEcCCHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-----TKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-----~~~~~V~~~~nEkeLL~~ 459 (1200)
+++.||+||++ + +|.+|+|+.|++. . .... ...-..++|...+|..- -.+-.|.-.....+.+..
T Consensus 3 ~~vv~D~ETTG---l--~~~~d~IIeig~v-~-~~~~---~~f~~lv~P~~~I~~~a~~IhGIt~e~v~~~p~f~ev~~~ 72 (232)
T PRK06309 3 ALIFYDTETTG---T--QIDKDRIIEIAAY-N-GVTS---ESFQTLVNPEIPIPAEASKIHGITTDEVADAPKFPEAYQK 72 (232)
T ss_pred cEEEEEeeCCC---C--CCCCCEEEEEEEE-c-Cccc---cEEEEEeCCCCCCChhHHhhcCCCHHHHhCCCCHHHHHHH
Confidence 57899999995 4 4678999999973 2 1111 11223466654442220 112334556678899999
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el 539 (1200)
|.+++.. .++++|||+..||+++|.+-+..++++.. ..-.+|+.++++...
T Consensus 73 ~~~fi~~--~~~lVaHN~~~FD~~~L~~e~~r~g~~~~---------------------------~~~~iDt~~l~~~~~ 123 (232)
T PRK06309 73 FIEFCGT--DNILVAHNNDAFDFPLLRKECRRHGLEPP---------------------------TLRTIDSLKWAQKYR 123 (232)
T ss_pred HHHHHcC--CCEEEEeCCHHHHHHHHHHHHHHcCCCCC---------------------------CCcEEeHHHHHHHHc
Confidence 9999842 47999999888999999988888877532 112578888887643
Q ss_pred -cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 540 -NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 540 -~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+.+++|+.++.++ |.. .. + .+-.+.||..+++|+.++
T Consensus 124 ~~~~~~~L~~l~~~~-~~~--~~-----------~--------aH~Al~Da~~t~~vl~~l 162 (232)
T PRK06309 124 PDLPKHNLQYLRQVY-GFE--EN-----------Q--------AHRALDDVITLHRVFSAL 162 (232)
T ss_pred CCCCCCCHHHHHHHc-CCC--CC-----------C--------CCCcHHHHHHHHHHHHHH
Confidence 46789999988765 321 11 0 112356788888777765
No 48
>TIGR03491 RecB family nuclease, putative, TM0106 family. Members of this uncharacterized protein family are found broadly but sporadically among bacteria. The N-terminal region is homologous to the Cas4 protein of CRISPR systems, although this protein family shows no signs of association with CRISPR repeats.
Probab=97.74 E-value=0.0004 Score=84.47 Aligned_cols=164 Identities=12% Similarity=0.107 Sum_probs=113.2
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENV 464 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I 464 (1200)
-.+.|||||. |..+-.+.+++.+.+++........++. ..-.+|++++..|++++
T Consensus 285 ~~~ffDiEt~--------P~~~~~yL~G~~~~~~~~~~~~~~~fla-----------------~~~~~E~~~~~~f~~~l 339 (457)
T TIGR03491 285 GELIFDIESD--------PDENLDYLHGFLVVDKGQENEKYRPFLA-----------------EDPNTEELAWQQFLQLL 339 (457)
T ss_pred ccEEEEecCC--------CCCCCceEEEEEEecCCCCCcceeeeec-----------------CCchHHHHHHHHHHHHH
Confidence 4588999998 3345567888755433211000111211 01258999999999999
Q ss_pred hhhCCC-EEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh--cC
Q psy5921 465 RQWDPD-ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV--NL 541 (1200)
Q Consensus 465 ~~~DPD-IIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el--~L 541 (1200)
..+ || -|+.|| +|..++|.+.+..++++.. .+.. +.. ..+|++..++..+ ..
T Consensus 340 ~~~-~~~~i~hY~--~~e~~~l~rla~~~~~~~~-~~~~--------------------l~~-~~vDL~~~vr~~~~~p~ 394 (457)
T TIGR03491 340 QSY-PDAPIYHYG--ETEKDSLRRLAKRYGTPEA-EIEE--------------------LLK-RFVDIHTIVRRSWILPI 394 (457)
T ss_pred HHC-CCCeEEeeC--HHHHHHHHHHHHHcCCCHH-HHHH--------------------HHH-HheehHHHHHhhEECCC
Confidence 887 87 688999 5679999999998887621 1111 111 3789999999764 67
Q ss_pred CCCCHHHHHHHHcCC-CcCCCChHhHHHHHhc----CCcccHHHHHHHHHHHHHHHHHHhhc
Q psy5921 542 QSYTFENIMYHVLHE-RIPLHSWKLLTCWWEH----RTHLYKWMTVEHYLIRVTGIIRLIEQ 598 (1200)
Q Consensus 542 ~SYsLe~Va~~vLg~-rk~~~s~~~L~~~~~~----~~~~~r~~vl~Y~l~Dv~l~l~Ll~k 598 (1200)
.||+|+.|+..+--+ +.+..++.+...||.. ++...+..++.||..||..+..|.+-
T Consensus 395 ~sysLK~v~~~lg~~~~~~~~~G~~ai~~y~~~~~~~~~~~l~~l~~YN~dD~~At~~l~~w 456 (457)
T TIGR03491 395 ESYSLKSIARWLGFEWRQKEASGAKSLLWYRQWKKTGDRRLLERILRYNEDDCRATWIVADW 456 (457)
T ss_pred CCCCHHHHHHHhCcccCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 999999998765323 3346888777777743 44456789999999999999988754
No 49
>PF08490 DUF1744: Domain of unknown function (DUF1744); InterPro: IPR013697 This domain is found on the catalytic subunit of DNA polymerase epsilon. It is found C-terminal to IPR006133 from INTERPRO and IPR006134 from INTERPRO. ; GO: 0003887 DNA-directed DNA polymerase activity, 0008270 zinc ion binding, 0006260 DNA replication, 0005634 nucleus
Probab=97.68 E-value=0.00096 Score=79.36 Aligned_cols=260 Identities=17% Similarity=0.194 Sum_probs=162.5
Q ss_pred hhhhHHHHHHhhcccchhhccCcchhhhhhhhhhccccccccc-cCCC----hhhhccc-----CCCCCCCeeeccCCCc
Q psy5921 601 FIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVA-VSPS----IKQRAHM-----RAPESLPLILEPESRL 670 (1200)
Q Consensus 601 ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~-p~ps----~~~~~~~-----~~~~~GglVleP~~G~ 670 (1200)
.+....++||.+++|+..+-..-..+-+.-+.-|..++.|.|+ -+|+ ...+... ...+....+---.||+
T Consensus 121 wl~~~i~laRY~~IPlgNl~~D~~~f~~Di~yAR~L~~~~~VLW~S~~~~PDlGG~e~Dd~~~~~~~~~~~~~~in~pG~ 200 (396)
T PF08490_consen 121 WLSERIELARYAHIPLGNLPSDNPLFLIDIFYARRLRKNNHVLWWSPSPRPDLGGKEEDDNRLLWDMDELESPEINNPGA 200 (396)
T ss_pred HHHHHHHHHHHcCCCcccCCcchHHHHHHHHHHHHHHHCCeEEeCCCCCCCCCCcchhhhhcccccccccCceEEECCCc
Confidence 4677799999999999887544556677778888888999875 2222 1111000 0011111112235899
Q ss_pred ccCCeEEeecccc-cHHHHHHcCCCccccCcccccCCCCCC--CCCcccccccChHHHhhccCcEeeCCCceEEecCCCc
Q psy5921 671 YTDPIIVLDFQSL-YPSVIIAYNYCFSTCLGRVEHLGVSDS--FPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIR 747 (1200)
Q Consensus 671 Y~~pV~vLDF~SL-YPSIIiayNIC~tT~l~~~~~~~~~~~--~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r 747 (1200)
|.+-.+-||+..| .-+|.++--| ...+ +.+. +.++.. .... .... ..+..|..
T Consensus 201 Y~~vcvEl~i~~LavnaiL~S~~i------~e~E---G~~~~~~~~~~~-----~~~~---~~~~---~~~~~~~e---- 256 (396)
T PF08490_consen 201 YRSVCVELDISNLAVNAILQSSLI------NELE---GSDSAGFNFDTA-----SDAS---NGSA---NSSSSYDE---- 256 (396)
T ss_pred cceEEEEEEecceeHHHHHHHhHH------hhhc---CCcccccccccc-----cccc---cccc---cccccccc----
Confidence 9986677999887 4444444332 1111 1000 001000 0000 0000 00011111
Q ss_pred CCChHHHHHHHHHHHHHHHHHhhhcc-CCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHH
Q psy5921 748 CGILPKMLQEILDTRLMVKQSMKEYK-SNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQ 826 (1200)
Q Consensus 748 ~GILP~iL~~Ll~~R~~vKk~mK~~~-~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~ 826 (1200)
...-+. .+--.|.++|..+++.. .+.. .|. +.+.+|-.+.+. .+.+|++.+...|-..-+..+.
T Consensus 257 ~~~~~~---~f~iLr~mv~~w~~d~~~~n~~----AD~-------ll~~f~rWl~sp-~S~LyDPaL~~~v~~LmkK~fl 321 (396)
T PF08490_consen 257 SAFCSA---AFRILRSMVKSWLRDALKGNSF----ADS-------LLQHFYRWLSSP-SSLLYDPALHRMVHNLMKKVFL 321 (396)
T ss_pred ccccHH---HHHHHHHHHHHHHHHHhcCCcc----HHH-------HHHHHHHHHcCC-cccccCHHHHHHHHHHHHHHHH
Confidence 111122 22334556666665421 1111 111 156788888887 4589999999999999888888
Q ss_pred HHHHHhcccCcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHcc--CCCceeeeeeceechhhccccceeEEE
Q psy5921 827 KAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN--NPTPVKLKFEKVYQPCILQTKKRYVGY 903 (1200)
Q Consensus 827 ~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~--~p~pi~LefEkvy~~~lL~~KKRYag~ 903 (1200)
+.+.-++. .|.+|||+|-..|.|.++..+.++|...++-|.+.|++. | ..+.|+..+.|+.++++.+.+|.|+
T Consensus 322 qLl~Ef~r---lG~~VVyA~~~riil~T~K~~~~~A~ay~~yi~~~i~~~~lF-~~l~l~~~~~w~~LlwmD~~NygGi 396 (396)
T PF08490_consen 322 QLLAEFRR---LGSKVVYADFNRIILCTGKTSLENAYAYVQYILKSIRSRELF-SWLDLKPVRYWDSLLWMDPYNYGGI 396 (396)
T ss_pred HHHHHHHH---cCCEEEEEcCCEEEEECCCCCHHHHHHHHHHHHHHHhccccc-ccEEeEHHHHhhhheEecccccCCC
Confidence 87777764 999999999999999999999999999999999998764 4 5689999999999999999999874
No 50
>cd06136 TREX1_2 DEDDh 3'-5' exonuclease domain of three prime repair exonuclease (TREX)1, TREX2, and similar proteins. Three prime repair exonuclease (TREX)1 and TREX2 are closely related DEDDh-type DnaQ-like 3'-5' exonucleases. They contain three conserved sequence motifs known as ExoI, II, and III, with a specific Hx(4)D conserved pattern at ExoIII. These motifs contain four conserved acidic residues that participate in coordination of divalent metal ions required for catalysis. Both proteins play a role in the metabolism and clearance of DNA. TREX1 is the major 3'-5' exonuclease activity detected in mammalian cells. Mutations in the human TREX1 gene can cause Aicardi-Goutieres syndrome (AGS), which is characterized by perturbed innate immunity and presents itself as a severe neurological disease. TREX1 degrades ssDNA generated by aberrant replication intermediates to prevent checkpoint activation and autoimmune disease. There are distinct structural differences between TREX1 and TRE
Probab=97.62 E-value=0.0012 Score=70.33 Aligned_cols=137 Identities=7% Similarity=0.053 Sum_probs=81.1
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCC-CC----------ceEEEEEecCCCCCCcCC----C-CCeEEEEc
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPE-ED----------RKVGIILIGQESELPEVR----T-KPIQMHFV 450 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~-d~----------~~~gv~~v~~~~~~p~~~----~-~~~~V~~~ 450 (1200)
..||+||++ +.| +.+|+|+.|++..-..+.. .. ..+--.+++|...+|..- . .+..+.-.
T Consensus 2 vv~D~ETTG---l~~-~~~d~Iiei~av~v~~~~~~~~~~~~~~~~~~~~~~~~lv~P~~~I~~~a~~IhGIt~e~l~~~ 77 (177)
T cd06136 2 VFLDLETTG---LPK-HNRPEITELCLVAVHRDHLLNTSRDKPALPRVLDKLSLCFNPGRAISPGASEITGLSNDLLEHK 77 (177)
T ss_pred eEEeeecCC---CCC-CCCCceEEEEEEEEecccccccccccccccceeeeeeEEeCCCCcCChhHHHHhCcCHHHHhcC
Confidence 579999995 532 5789999999875443211 00 011234566654443210 0 00111111
Q ss_pred CC-HHHHHHHHHHHHhhhC-CCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEE
Q psy5921 451 SN-EKELFSIFIENVRQWD-PDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIV 528 (1200)
Q Consensus 451 ~n-EkeLL~~F~~~I~~~D-PDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlv 528 (1200)
.. +.++...|.+++...+ +.+|+|||...||+++|.+-++.+|++.. .....
T Consensus 78 ~~~~~~~~~~l~~f~~~~~~~~~lVaHNa~~FD~~fL~~~~~r~~~~~~--------------------------~~~~~ 131 (177)
T cd06136 78 APFDSDTANLIKLFLRRQPKPICLVAHNGNRFDFPILRSELERLGTKLP--------------------------DDILC 131 (177)
T ss_pred CCccHHHHHHHHHHHHhcCCCCEEEEcCCcccCHHHHHHHHHHcCCCCC--------------------------CCCEE
Confidence 11 2234555555555544 46899999988999999999888876521 01235
Q ss_pred eehHHHHHhhhcCCCCCHHHHHHHHcCCC
Q psy5921 529 INLWRLLRHEVNLQSYTFENIMYHVLHER 557 (1200)
Q Consensus 529 lDl~r~~r~el~L~SYsLe~Va~~vLg~r 557 (1200)
+|+++.+|.... +|++++.+++|..
T Consensus 132 iDtl~l~r~~~~----~L~~l~~~~~~~~ 156 (177)
T cd06136 132 VDSLPAFRELDQ----SLGSLYKRLFGQE 156 (177)
T ss_pred EEeHHHHhhhHh----hHHHHHHHHhCCC
Confidence 688887776543 8999988776543
No 51
>PRK06310 DNA polymerase III subunit epsilon; Validated
Probab=97.58 E-value=0.0013 Score=73.88 Aligned_cols=135 Identities=13% Similarity=0.145 Sum_probs=91.2
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-C----CCCeEEEEcCCHHHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-R----TKPIQMHFVSNEKELFS 458 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-~----~~~~~V~~~~nEkeLL~ 458 (1200)
.+.+.||+||++ + +|.+|+|+.|++....... ........++|...+|.. . ..+-.|.-.....+++.
T Consensus 7 ~~~v~~D~ETTG---l--~~~~d~IIEIa~v~v~~~~--~~~~~~~li~P~~~I~~~a~~ihgIt~e~v~~~p~~~ev~~ 79 (250)
T PRK06310 7 TEFVCLDCETTG---L--DVKKDRIIEFAAIRFTFDE--VIDSVEFLINPERVVSAESQRIHHISDAMLRDKPKIAEVFP 79 (250)
T ss_pred CcEEEEEEeCCC---C--CCCCCeEEEEEEEEEECCe--EEEEEEEEECcCCCCCHhhhhccCcCHHHHhCCCCHHHHHH
Confidence 678999999995 4 4678999999887543321 111223456665444321 0 11123444567888999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhh
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE 538 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~e 538 (1200)
.|.+++.. .++++|||+ .||+++|.+-+..+|++.. ....-.+|+.++++..
T Consensus 80 ~~~~fl~~--~~~lvghn~-~FD~~~L~~~~~r~g~~~~-------------------------~~~~~~iDtl~lar~~ 131 (250)
T PRK06310 80 QIKGFFKE--GDYIVGHSV-GFDLQVLSQESERIGETFL-------------------------SKHYYIIDTLRLAKEY 131 (250)
T ss_pred HHHHHhCC--CCEEEEECH-HHHHHHHHHHHHHcCCCcc-------------------------ccCCcEEehHHHHHhc
Confidence 99998853 389999997 5999999998888777542 0012367888888764
Q ss_pred hcCCCCCHHHHHHHH
Q psy5921 539 VNLQSYTFENIMYHV 553 (1200)
Q Consensus 539 l~L~SYsLe~Va~~v 553 (1200)
-...+|+|++++..+
T Consensus 132 ~~~~~~~L~~l~~~~ 146 (250)
T PRK06310 132 GDSPNNSLEALAVHF 146 (250)
T ss_pred ccCCCCCHHHHHHHC
Confidence 456789999998775
No 52
>PRK06807 DNA polymerase III subunit epsilon; Validated
Probab=97.56 E-value=0.0011 Score=76.61 Aligned_cols=133 Identities=12% Similarity=0.209 Sum_probs=91.3
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-C----CCCeEEEEcCCHHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-R----TKPIQMHFVSNEKELF 457 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-~----~~~~~V~~~~nEkeLL 457 (1200)
+...+.||+||++ + +|..++|+.|++....++.. ....-..++|...++.. . -....+.-.....+.+
T Consensus 7 ~~~~Vv~DlETTG---l--~p~~~eIIEIgaV~v~~g~i--~~~f~~lVkP~~~I~~~a~~ihGIT~e~l~~~~~~~evl 79 (313)
T PRK06807 7 PLDYVVIDFETTG---F--NPYNDKIIQVAAVKYRNHEL--VDQFVSYVNPERPIPDRITSLTGITNYRVSDAPTIEEVL 79 (313)
T ss_pred CCCEEEEEEECCC---C--CCCCCeEEEEEEEEEECCEE--EEEEEEEECcCCCCCHhhhccCCCCHHHHhCCCCHHHHH
Confidence 4578999999984 4 35679999999876554321 11112356665433221 0 0112233456788999
Q ss_pred HHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh
Q psy5921 458 SIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 537 (1200)
Q Consensus 458 ~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~ 537 (1200)
..|++++. -++++|||+ .||+++|.+.+..+|++.. .. ..+|+...++.
T Consensus 80 ~~f~~fl~---~~~lVaHNa-~FD~~fL~~~~~~~gl~~~--------------------------~~-~~iDtl~la~~ 128 (313)
T PRK06807 80 PLFLAFLH---TNVIVAHNA-SFDMRFLKSNVNMLGLPEP--------------------------KN-KVIDTVFLAKK 128 (313)
T ss_pred HHHHHHHc---CCeEEEEcH-HHHHHHHHHHHHHcCCCCC--------------------------CC-CEeeHHHHHHH
Confidence 99999985 467999998 8999999999998887532 01 16798888877
Q ss_pred hh-cCCCCCHHHHHHHH
Q psy5921 538 EV-NLQSYTFENIMYHV 553 (1200)
Q Consensus 538 el-~L~SYsLe~Va~~v 553 (1200)
.+ .+.+++|++++.++
T Consensus 129 ~~~~~~~~kL~~L~~~l 145 (313)
T PRK06807 129 YMKHAPNHKLETLKRML 145 (313)
T ss_pred HhCCCCCCCHHHHHHHc
Confidence 65 47889999998764
No 53
>TIGR01405 polC_Gram_pos DNA polymerase III, alpha chain, Gram-positive type. The N-terminal region of about 200 amino acids is rich in low-complexity sequence, poorly alignable, and not included n this model.
Probab=97.48 E-value=0.0013 Score=87.67 Aligned_cols=132 Identities=19% Similarity=0.175 Sum_probs=94.0
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHHHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEKELFS 458 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEkeLL~ 458 (1200)
-+.+.||+||++ + +|..|+|+.|+++...++.. ..+--+.++|....|.. .-....+.-...+.+.|.
T Consensus 190 ~~~VVfDiETTG---L--~~~~d~IIEIGAVkv~~g~i--id~f~~~V~P~~~I~~~~~~ltGIT~e~L~~ap~~~evl~ 262 (1213)
T TIGR01405 190 ATYVVFDIETTG---L--SPQYDEIIEFGAVKVKNGRI--IDKFQFFIKPHEPLSAFVTELTGITQDMLENAPEIEEVLE 262 (1213)
T ss_pred CcEEEEEeEecC---C--CCCCCeEEEEEEEEEECCeE--EEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHH
Confidence 389999999995 4 46789999999987665421 11123346665433221 011122344568999999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhh
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE 538 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~e 538 (1200)
.|.+++. ..+++||| ..||+++|.+.+..++++.+ ..-.+|+..+.|..
T Consensus 263 ~f~~fl~---~~iLVaHN-a~FD~~fL~~~~~r~g~~~~---------------------------~~~~IDTl~lar~l 311 (1213)
T TIGR01405 263 KFKEFFK---DSILVAHN-ASFDIGFLNTNFEKVGLEPL---------------------------ENPVIDTLELARAL 311 (1213)
T ss_pred HHHHHhC---CCeEEEEC-hHHHHHHHHHHHHHcCCCcc---------------------------CCCEeEHHHHHHHH
Confidence 9999985 47999999 58999999999988877532 11267998888876
Q ss_pred h-cCCCCCHHHHHHHH
Q psy5921 539 V-NLQSYTFENIMYHV 553 (1200)
Q Consensus 539 l-~L~SYsLe~Va~~v 553 (1200)
+ .+.+|+|+++|.++
T Consensus 312 ~p~~k~~kL~~Lak~l 327 (1213)
T TIGR01405 312 NPEYKSHRLGNICKKL 327 (1213)
T ss_pred hccCCCCCHHHHHHHc
Confidence 5 57899999999884
No 54
>PRK07740 hypothetical protein; Provisional
Probab=97.47 E-value=0.0011 Score=74.14 Aligned_cols=158 Identities=14% Similarity=0.103 Sum_probs=100.0
Q ss_pred CcceEEEEEEEeccCCCCCCCCCC-CcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-C----CCCeEEEEcCCHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAY-DEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-R----TKPIQMHFVSNEKE 455 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~-DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-~----~~~~~V~~~~nEke 455 (1200)
..++++.||+||++ ++ |.+ |+|+.|++...+++.. ....--..++|....+.. . ..+..+.-.....+
T Consensus 57 ~~~~~vv~D~ETTG---l~--p~~~deIIeIgaV~~~~~~i-~~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~e 130 (244)
T PRK07740 57 TDLPFVVFDLETTG---FS--PQQGDEILSIGAVKTKGGEV-ETDTFYSLVKPKRPIPEHILELTGITAEDVAFAPPLAE 130 (244)
T ss_pred cCCCEEEEEEeCCC---CC--CCCCCeEEEEEEEEEECCEE-EEEEEEEEeCcCCCCChhheeccCCCHHHHhCCCCHHH
Confidence 45679999999994 44 444 8999999987654321 011112346665433221 0 11122445578899
Q ss_pred HHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHh-CCCCcccccccccccccccCccccccceeeecceEEeehHHH
Q psy5921 456 LFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL-GLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRL 534 (1200)
Q Consensus 456 LL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~l-gi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~ 534 (1200)
.+..|.+++. -++++|||+ .||+.+|.+-+... +.+. ..-.+|+...
T Consensus 131 vl~~f~~fi~---~~~lVahna-~fD~~fL~~~~~~~~~~~~----------------------------~~~~iDt~~l 178 (244)
T PRK07740 131 VLHRFYAFIG---AGVLVAHHA-GHDKAFLRHALWRTYRQPF----------------------------THRLIDTMFL 178 (244)
T ss_pred HHHHHHHHhC---CCEEEEeCH-HHHHHHHHHHHHHhcCCCc----------------------------CCCeechHHH
Confidence 9999999875 479999997 79999987654332 2110 1237888888
Q ss_pred HHhhh-cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 535 LRHEV-NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 535 ~r~el-~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
++... ...+++|++++.+ +|..... .+..+.||..+++|+.++
T Consensus 179 ~r~l~~~~~~~sL~~l~~~-~gi~~~~---------------------~H~Al~Da~ata~l~~~l 222 (244)
T PRK07740 179 TKLLAHERDFPTLDDALAY-YGIPIPR---------------------RHHALGDALMTAKLWAIL 222 (244)
T ss_pred HHHHcCCCCCCCHHHHHHH-CCcCCCC---------------------CCCcHHHHHHHHHHHHHH
Confidence 77654 3468999999876 4432110 123467888888887776
No 55
>PRK08517 DNA polymerase III subunit epsilon; Provisional
Probab=97.44 E-value=0.0013 Score=74.07 Aligned_cols=134 Identities=12% Similarity=0.083 Sum_probs=90.3
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-----CCCeEEEEcCCHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-----TKPIQMHFVSNEKEL 456 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-----~~~~~V~~~~nEkeL 456 (1200)
.....+.+|+||++ . +|..++|+.|+++...++.. ....-..+++. ..|..- -....+.-.....+.
T Consensus 66 ~~~~~vv~DiETTG---~--~~~~~~IIEIGAv~v~~g~i--~~~f~~~v~p~-~ip~~~~~itGIt~e~l~~ap~~~ev 137 (257)
T PRK08517 66 KDQVFCFVDIETNG---S--KPKKHQIIEIGAVKVKNGEI--IDRFESFVKAK-EVPEYITELTGITYEDLENAPSLKEV 137 (257)
T ss_pred CCCCEEEEEEeCCC---C--CCCCCeEEEEEEEEEECCEE--EEEEEEEECCC-CCChhhhhhcCcCHHHHcCCCCHHHH
Confidence 45678999999995 3 46678999999877654321 11112234443 222110 011223456789999
Q ss_pred HHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHH
Q psy5921 457 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR 536 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r 536 (1200)
+..|.+++.. ++++|||. .||+.+|.+.+..+|++.+ ..+ .+|+.+.++
T Consensus 138 l~~f~~fl~~---~v~VaHNa-~FD~~fL~~~l~r~g~~~~--------------------------~~~-~ldtl~la~ 186 (257)
T PRK08517 138 LEEFRLFLGD---SVFVAHNV-NFDYNFISRSLEEIGLGPL--------------------------LNR-KLCTIDLAK 186 (257)
T ss_pred HHHHHHHHCC---CeEEEECH-HHHHHHHHHHHHHcCCCCC--------------------------CCC-cEehHHHHH
Confidence 9999999753 78999999 7999999888887776532 011 367777887
Q ss_pred hhhcCCCCCHHHHHHHHcC
Q psy5921 537 HEVNLQSYTFENIMYHVLH 555 (1200)
Q Consensus 537 ~el~L~SYsLe~Va~~vLg 555 (1200)
..+...+|+|++++.. +|
T Consensus 187 ~~~~~~~~~L~~L~~~-lg 204 (257)
T PRK08517 187 RTIESPRYGLSFLKEL-LG 204 (257)
T ss_pred HHccCCCCCHHHHHHH-cC
Confidence 7777789999999875 44
No 56
>smart00479 EXOIII exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T and other exonucleases.
Probab=97.40 E-value=0.0027 Score=65.88 Aligned_cols=158 Identities=16% Similarity=0.162 Sum_probs=101.3
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEkeLL~~ 459 (1200)
+.+.||+||++ . +|..++|+.|++...+++. ....--..++|....+.. .-..-.+..-..+.+.+..
T Consensus 1 ~~v~~D~Ettg---~--~~~~~~Iieig~v~~~~~~--~~~~f~~~v~p~~~i~~~~~~~~Git~~~l~~~~~~~~~~~~ 73 (169)
T smart00479 1 TLVVIDCETTG---L--DPGKDEIIEIAAVDVDGGR--IIVVFDTYVKPDRPITDYATEIHGITPEMLDDAPTFEEVLEE 73 (169)
T ss_pred CEEEEEeeCCC---C--CCCCCeEEEEEEEEEECCE--eEEEEEEEECCCCCCCHHHHHHhCCCHHHHhCCCCHHHHHHH
Confidence 36889999995 3 3457999999988765532 111112245653322111 0011122334678899999
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el 539 (1200)
|.+++.. .+++|||.-.||+.+|..-+..++++... ..+ .+|+....+...
T Consensus 74 ~~~~l~~---~~~v~~n~~~fD~~~L~~~~~~~~~~~~~-------------------------~~~-~iD~~~~~~~~~ 124 (169)
T smart00479 74 LLEFLKG---KILVAGNALNFDLRFLKLEHPRLGIKDPP-------------------------KNP-VIDTLKLARALN 124 (169)
T ss_pred HHHHhcC---CEEEEeCCHHHhHHHHHHHHHHhCCCCCc-------------------------CCC-eeEHHHHHHHHC
Confidence 9998854 56889999899999999988888765320 011 678887777665
Q ss_pred cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 540 NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 540 ~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
...+++|+++++.+....... .+..+.|+..+++|+.++
T Consensus 125 ~~~~~~L~~l~~~~~~~~~~~---------------------~H~A~~Da~~t~~l~~~~ 163 (169)
T smart00479 125 PGRKYSLKKLAERLGLEVIGR---------------------AHRALDDARATAKLFKKL 163 (169)
T ss_pred CCCCCCHHHHHHHCCCCCCCC---------------------CcCcHHHHHHHHHHHHHH
Confidence 445899999998764332111 123467888888887765
No 57
>PRK07883 hypothetical protein; Validated
Probab=97.37 E-value=0.002 Score=80.21 Aligned_cols=157 Identities=15% Similarity=0.148 Sum_probs=106.0
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-----CCCeEEEEcCCHHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-----TKPIQMHFVSNEKELF 457 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-----~~~~~V~~~~nEkeLL 457 (1200)
..+.+.||+||++ + +|..++|+.|++...+++.. ....-..++|....+... ..+..+.-...+.+.+
T Consensus 14 ~~~~Vv~D~ETTG---l--~p~~~~IIEIgaV~v~~g~i--v~~f~~lV~P~~~i~~~~~~itGIt~e~l~~ap~~~evl 86 (557)
T PRK07883 14 DVTFVVVDLETTG---G--SPAGDAITEIGAVKVRGGEV--LGEFATLVNPGRPIPPFITVLTGITTAMVAGAPPIEEVL 86 (557)
T ss_pred CCCEEEEEEecCC---C--CCCCCeEEEEEEEEEECCEE--EEEEEEEECCCCCCChhHHhhcCCCHHHHhCCCCHHHHH
Confidence 3588999999995 4 45679999999877654321 111234566654332210 1112244456888999
Q ss_pred HHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh
Q psy5921 458 SIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 537 (1200)
Q Consensus 458 ~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~ 537 (1200)
..|.+++. .++++|||. .||+++|..-+..+|++.. ....+|+...++.
T Consensus 87 ~~f~~fl~---~~~lVaHNa-~FD~~fL~~~~~r~g~~~~---------------------------~~~~iDTl~lar~ 135 (557)
T PRK07883 87 PAFLEFAR---GAVLVAHNA-PFDIGFLRAAAARCGYPWP---------------------------GPPVLCTVRLARR 135 (557)
T ss_pred HHHHHHhc---CCEEEEeCc-HHHHHHHHHHHHHcCCCCC---------------------------CCCcEecHHHHHH
Confidence 99999885 489999999 6999999999998887532 1125788888877
Q ss_pred hh---cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 538 EV---NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 538 el---~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+ ...+|+|++++.. +|.... + .+..+.||..+++|+.++
T Consensus 136 l~~~~~~~~~~L~~L~~~-~gi~~~-------------~--------~H~Al~DA~ata~l~~~l 178 (557)
T PRK07883 136 VLPRDEAPNVRLSTLARL-FGATTT-------------P--------THRALDDARATVDVLHGL 178 (557)
T ss_pred hcccCCCCCCCHHHHHHH-CCcccC-------------C--------CCCHHHHHHHHHHHHHHH
Confidence 54 4789999999875 443211 0 122467888888888776
No 58
>PRK07942 DNA polymerase III subunit epsilon; Provisional
Probab=97.36 E-value=0.0051 Score=68.35 Aligned_cols=162 Identities=12% Similarity=0.039 Sum_probs=100.2
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCC-CCCCCceEEEEEecCCCCCCcC-C-CCCe---EEEE-cCCHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTC-PPEEDRKVGIILIGQESELPEV-R-TKPI---QMHF-VSNEK 454 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d-~~~d~~~~gv~~v~~~~~~p~~-~-~~~~---~V~~-~~nEk 454 (1200)
...+++.||+||++ + +|..|+|+.|++...+. +.. ....-.+++|...+|.. . -.++ .+.- -..+.
T Consensus 4 ~~~~~vv~D~ETTG---l--~p~~d~Iieig~v~v~~~g~~--~~~~~~lv~P~~~i~~~a~~IhGIt~e~l~~~g~~~~ 76 (232)
T PRK07942 4 HPGPLAAFDLETTG---V--DPETARIVTAALVVVDADGEV--VESREWLADPGVEIPEEASAVHGITTEYARAHGRPAA 76 (232)
T ss_pred ccCcEEEEEeccCC---C--CCCCCeeEEEEEEEEeCCCcc--ccceEEEECCCCCCCHHHHHHhCCCHHHHHhhCCCHH
Confidence 35678999999995 4 46789999999876542 321 11123456765433321 0 0011 1111 12356
Q ss_pred HHHHHHHHHHhhh--CCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehH
Q psy5921 455 ELFSIFIENVRQW--DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLW 532 (1200)
Q Consensus 455 eLL~~F~~~I~~~--DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~ 532 (1200)
+.|..|...|..+ +-.+++|||. .||+.+|..=+..+++... ....++|.+
T Consensus 77 ~vl~e~~~~l~~~~~~~~~lVahNa-~FD~~fL~~~~~r~~~~~~--------------------------~~~~~iDt~ 129 (232)
T PRK07942 77 EVLAEIADALREAWARGVPVVVFNA-PYDLTVLDRELRRHGLPSL--------------------------VPGPVIDPY 129 (232)
T ss_pred HHHHHHHHHHHHHhhcCCEEEEeCc-HhhHHHHHHHHHHcCCCCc--------------------------cCCcEeeHH
Confidence 7899999988753 4579999999 6999999887777765421 112256877
Q ss_pred HHHHhhh--cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 533 RLLRHEV--NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 533 r~~r~el--~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+.+... ...+++|++++.++ |..... .+..+.||..+++|+.++
T Consensus 130 ~l~~~~~~~~~~~~~L~~l~~~~-gi~~~~---------------------aH~Al~Da~ata~l~~~l 176 (232)
T PRK07942 130 VIDKAVDRYRKGKRTLTALCEHY-GVRLDN---------------------AHEATADALAAARVAWAL 176 (232)
T ss_pred HHHhhhhcccCCCCCHHHHHHHc-CCCCCC---------------------CCChHHHHHHHHHHHHHH
Confidence 7666432 34578999998874 332110 112356888888887775
No 59
>PRK06063 DNA polymerase III subunit epsilon; Provisional
Probab=97.34 E-value=0.0037 Score=72.50 Aligned_cols=134 Identities=13% Similarity=0.127 Sum_probs=88.7
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecC-CCCCCCceEEEEEecCCCCC-CcC-C-CCCeEEEEcCCHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT-CPPEEDRKVGIILIGQESEL-PEV-R-TKPIQMHFVSNEKELF 457 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~-d~~~d~~~~gv~~v~~~~~~-p~~-~-~~~~~V~~~~nEkeLL 457 (1200)
.+...+.||+||++ + +|..|+|+.|++...+ ++.. ......+++|.... +.. . .....+.-...-.+++
T Consensus 13 ~~~~fvvlD~ETTG---l--~p~~d~IIeIgav~v~~~g~i--~~~~~~lv~P~~~~~~~~IhGIt~e~l~~ap~f~ev~ 85 (313)
T PRK06063 13 YPRGWAVVDVETSG---F--RPGQARIISLAVLGLDADGNV--EQSVVTLLNPGVDPGPTHVHGLTAEMLEGQPQFADIA 85 (313)
T ss_pred CCCCEEEEEEECCC---C--CCCCCEEEEEEEEEEECCcee--eeEEEEEECcCCCCCCeecCCCCHHHHhCCCCHHHHH
Confidence 35688999999995 4 4678999999987653 3321 11223456654211 100 0 0111233345667888
Q ss_pred HHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh
Q psy5921 458 SIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 537 (1200)
Q Consensus 458 ~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~ 537 (1200)
..|.+++. -++++|||. .||+++|.+-+..+++... ....+|++..+|.
T Consensus 86 ~~l~~~l~---~~~lVaHNa-~FD~~fL~~~~~r~g~~~~---------------------------~~~~ldTl~lar~ 134 (313)
T PRK06063 86 GEVAELLR---GRTLVAHNV-AFDYSFLAAEAERAGAELP---------------------------VDQVMCTVELARR 134 (313)
T ss_pred HHHHHHcC---CCEEEEeCH-HHHHHHHHHHHHHcCCCCC---------------------------CCCEEehHHHHHH
Confidence 88888874 489999998 6999999988887775422 1125688888876
Q ss_pred hh-cCCCCCHHHHHHHH
Q psy5921 538 EV-NLQSYTFENIMYHV 553 (1200)
Q Consensus 538 el-~L~SYsLe~Va~~v 553 (1200)
.. .+.+|+|++++.++
T Consensus 135 ~~~~~~~~kL~~l~~~~ 151 (313)
T PRK06063 135 LGLGLPNLRLETLAAHW 151 (313)
T ss_pred hccCCCCCCHHHHHHHc
Confidence 53 67899999999874
No 60
>PF03175 DNA_pol_B_2: DNA polymerase type B, organellar and viral; InterPro: IPR004868 This entry is found in DNA polymerase type B proteins. Proteins in this entry are found in plant and fungal mitochondria, and in viruses.; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0008408 3'-5' exonuclease activity, 0006260 DNA replication; PDB: 1XI1_B 2EX3_G 1XHZ_D 1XHX_C 2PZS_B 2PY5_A 2PYL_A 2PYJ_A.
Probab=97.33 E-value=5.7e-05 Score=91.81 Aligned_cols=50 Identities=18% Similarity=0.321 Sum_probs=32.8
Q ss_pred CceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCcccc
Q psy5921 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802 (1200)
Q Consensus 737 nG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga 802 (1200)
.|..|-+ +.|+++.-++.+.+.|...|+.-... +.-.||++||.||=+|-
T Consensus 323 ~g~~~~~---~~~~F~~~i~~~~~~k~~~k~~~~~~-------------~~i~KL~lNSlyGkf~~ 372 (459)
T PF03175_consen 323 EGYYFDE---KGGLFKEYIDKLYELKKNAKKKADKE-------------KSIAKLLLNSLYGKFGQ 372 (459)
T ss_dssp EEEEEEE---ES-TTHHHHHHHHHHHHH--HHHHH----------------HHHHHHHHHHHHHS-
T ss_pred EEEEecc---ccCchHHHHHHHHHhhhhhccCCchh-------------HHHHHHHHhhhhhhhcc
Confidence 3445433 57999999999999998887643211 15689999999997764
No 61
>PRK05711 DNA polymerase III subunit epsilon; Provisional
Probab=97.22 E-value=0.0032 Score=70.27 Aligned_cols=165 Identities=9% Similarity=0.023 Sum_probs=103.6
Q ss_pred CcceEEEEEEEeccCCCCCCCCC-CCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-C----CCCeEEEEcCCHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPA-YDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-R----TKPIQMHFVSNEKE 455 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~-~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-~----~~~~~V~~~~nEke 455 (1200)
++++.+.||+||++ +. |. .|+|+.|++....+..... ...-..++|...++.. . ...-.+.--....+
T Consensus 2 ~~~r~vvlDtETTG---ld--p~~~drIIEIGaV~v~~~~~~~-~~f~~~i~P~~~i~~~a~~VHGIT~e~l~~~p~f~e 75 (240)
T PRK05711 2 AIMRQIVLDTETTG---LN--QREGHRIIEIGAVELINRRLTG-RNFHVYIKPDRLVDPEALAVHGITDEFLADKPTFAE 75 (240)
T ss_pred CCCeEEEEEeeCCC---cC--CCCCCeEEEEEEEEEECCEEec-cEEEEEECcCCcCCHHHhhhcCCCHHHHcCCCCHHH
Confidence 46789999999995 54 44 7999999986543321100 1113356665433221 0 01112333457889
Q ss_pred HHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHH
Q psy5921 456 LFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLL 535 (1200)
Q Consensus 456 LL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~ 535 (1200)
++..|.+++.. ..++|||. .||+++|..-+..+|.... +.. ..+ -++|++...
T Consensus 76 v~~~f~~fi~~---~~lVaHNa-~FD~~fL~~el~r~g~~~~----~~~-----------------~~~--~~iDTl~la 128 (240)
T PRK05711 76 VADEFLDFIRG---AELIIHNA-PFDIGFMDYEFALLGRDIP----KTN-----------------TFC--KVTDTLAMA 128 (240)
T ss_pred HHHHHHHHhCC---CEEEEEcc-HHhHHHHHHHHHHhCCCCC----ccc-----------------ccC--ceeeHHHHH
Confidence 99999999854 56899999 6999999888777763211 100 011 278999999
Q ss_pred HhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 536 RHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 536 r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
|..+.-.+++|+++|.++ |.... . +-.+-.+.|+.++.+++.++
T Consensus 129 r~~~p~~~~~L~aL~~~~-gi~~~-------------~------r~~H~AL~DA~~~A~v~~~l 172 (240)
T PRK05711 129 RRMFPGKRNSLDALCKRY-GIDNS-------------H------RTLHGALLDAEILAEVYLAM 172 (240)
T ss_pred HHHcCCCCCCHHHHHHHC-CCCCC-------------C------CCCCCHHHHHHHHHHHHHHH
Confidence 887766778999999875 32100 0 01223467888888887655
No 62
>PRK09146 DNA polymerase III subunit epsilon; Validated
Probab=97.20 E-value=0.0026 Score=70.91 Aligned_cols=160 Identities=11% Similarity=0.035 Sum_probs=98.9
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-----CCCeEEEEcCCHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-----TKPIQMHFVSNEKEL 456 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-----~~~~~V~~~~nEkeL 456 (1200)
...+.+.||+||++ ++ |..|+|+.|++..-+++........-.+++|...+|... .....+.-..+..+.
T Consensus 45 ~~~~~vviD~ETTG---l~--p~~d~IieIg~v~v~~~~i~~~~~~~~li~P~~~i~~~~~~IhGIt~e~l~~ap~~~ev 119 (239)
T PRK09146 45 SEVPFVALDFETTG---LD--AEQDAIVSIGLVPFTLQRIRCRQARHWVVKPRRPLEEESVVIHGITHSELQDAPDLERI 119 (239)
T ss_pred ccCCEEEEEeECCC---CC--CCCCcEEEEEEEEEECCeEeecceEEEEECCCCCCChhhhhhcCCCHHHHhCCCCHHHH
Confidence 35789999999995 44 578999999997655432110112234566654332210 011223344577889
Q ss_pred HHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHH
Q psy5921 457 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR 536 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r 536 (1200)
+..|..++ ..++++|||. .||+++|.+-+..++.... ....+|+..+.+
T Consensus 120 l~~l~~~~---~~~~lVaHna-~FD~~fL~~~l~~~~~~~~---------------------------~~~~iDTl~Lar 168 (239)
T PRK09146 120 LDELLEAL---AGKVVVVHYR-RIERDFLDQALRNRIGEGI---------------------------EFPVIDTMEIEA 168 (239)
T ss_pred HHHHHHHh---CCCEEEEECH-HHHHHHHHHHHHHhcCCCC---------------------------CCceechHHHHH
Confidence 99998887 4489999997 5999999988776422110 011578888777
Q ss_pred hhh--------------cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 537 HEV--------------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 537 ~el--------------~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+.+ ++.+|+|++++.++ |-. ... .+..+.||..+.+|+..+
T Consensus 169 ~l~~~~~~~~~~~~~~~~~~~~~L~~l~~~~-gl~--~~~-------------------~H~Al~DA~ata~l~~~~ 223 (239)
T PRK09146 169 RIQRKQAGGLWNRLKGKKPESIRLADSRLRY-GLP--AYS-------------------PHHALTDAIATAELLQAQ 223 (239)
T ss_pred HHcccccccccchhccCCCCCCCHHHHHHHc-CCC--CCC-------------------CCCcHHHHHHHHHHHHHH
Confidence 542 23778898888763 221 110 122467888888887654
No 63
>TIGR01406 dnaQ_proteo DNA polymerase III, epsilon subunit, Proteobacterial. This model represents DnaQ, the DNA polymerase III epsilon subunit, as found in most Proteobacteria. It consists largely of an exonuclease domain as described in pfam model pfam00929. In Gram-positive bacteria, closely related regions are found both in the Gram-positive type DNA polymerase III alpha subunit and as an additional N-terminal domain of a DinG-family helicase. Both are excluded from this model, as are smaller proteins, also outside the Proteobacteria, that are similar in size to the epsilon subunit but as different in sequence as are the epsilon-like regions found in Gram-positive bacteria.
Probab=97.20 E-value=0.0034 Score=69.43 Aligned_cols=136 Identities=13% Similarity=0.115 Sum_probs=86.4
Q ss_pred eEEEEEEEeccCCCCCCCCCC-CcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC----C-CCCeEEEEcCCHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAY-DEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV----R-TKPIQMHFVSNEKELFS 458 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~-DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~----~-~~~~~V~~~~nEkeLL~ 458 (1200)
+.+.||+||++ +. |.. |+|+.|++....+.... ....-..++|....|.. . -..-.+.-.....+.+.
T Consensus 1 r~vvlD~ETTG---l~--p~~~d~IIEIgav~~~~~~~~-~~~f~~~i~P~~~i~~~a~~vhGIt~e~l~~~p~f~ev~~ 74 (225)
T TIGR01406 1 RQIILDTETTG---LD--PKGGHRIVEIGAVELVNRMLT-GDNFHVYVNPERDMPAEAAKVHGITDEFLADKPKFKEIAD 74 (225)
T ss_pred CEEEEEeeCCC---cC--CCCCCeEEEEEEEEEECCcEe-cceEEEEECcCCCCCHHHHhccCCCHHHHhCCCCHHHHHH
Confidence 46789999995 43 444 89999998643332110 01123346665433221 0 01112233357789999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhh
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE 538 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~e 538 (1200)
.|.+++.. .++||||. .||+++|..-+..+|... .+.. .. . -++|++..+|+.
T Consensus 75 ~f~~fi~~---~~lVaHNa-~FD~~fL~~el~r~g~~~----~~~~-----------------~~-~-~~iDTl~lar~~ 127 (225)
T TIGR01406 75 EFLDFIGG---SELVIHNA-AFDVGFLNYELERLGPTI----KKIG-----------------EF-C-RVIDTLAMARER 127 (225)
T ss_pred HHHHHhCC---CEEEEEec-HHHHHHHHHHHHHhCCCC----cccc-----------------cC-C-CEEEHHHHHHHH
Confidence 99999864 57899998 699999998887776321 0000 00 1 268999999887
Q ss_pred hcCCCCCHHHHHHHH
Q psy5921 539 VNLQSYTFENIMYHV 553 (1200)
Q Consensus 539 l~L~SYsLe~Va~~v 553 (1200)
+.-.+|+|+++|.++
T Consensus 128 ~p~~~~~L~~L~~~~ 142 (225)
T TIGR01406 128 FPGQRNSLDALCKRF 142 (225)
T ss_pred cCCCCCCHHHHHHhc
Confidence 766789999999875
No 64
>PRK05601 DNA polymerase III subunit epsilon; Validated
Probab=97.19 E-value=0.0043 Score=72.48 Aligned_cols=194 Identities=11% Similarity=0.062 Sum_probs=111.2
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecC-CCCCCCceEEEEEecCCCCC-CcC-C-CCCeEEEEcCCHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT-CPPEEDRKVGIILIGQESEL-PEV-R-TKPIQMHFVSNEKELF 457 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~-d~~~d~~~~gv~~v~~~~~~-p~~-~-~~~~~V~~~~nEkeLL 457 (1200)
.....++|||||++ + +|..|+|+.|++.... ++.. .....++++|.... |.. . ...-.+.--.+-.+++
T Consensus 44 ~~~~fVvlDiETTG---L--dp~~drIIeIgAV~i~~~g~i--ve~f~tLVnP~~~~~p~~LHGIT~e~La~AP~f~eVl 116 (377)
T PRK05601 44 EAAPFVAVSIQTSG---I--HPSTSRLITIDAVTLTADGEE--VEHFHAVLNPGEDPGPFHLHGLSAEEFAQGKRFSQIL 116 (377)
T ss_pred CCCCEEEEEEECCC---C--CCCCCeEEEEEEEEEEcCCEE--EEEEEEEECcCCCCCCccccCCCHHHHhcCCCHHHHH
Confidence 44679999999995 4 5788999999887443 3321 12335567765422 211 0 1112233445778899
Q ss_pred HHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCc-ccccccccccccccCccccccceeeecceEEeehHHHHH
Q psy5921 458 SIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLN-QELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR 536 (1200)
Q Consensus 458 ~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~-~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r 536 (1200)
..|.+++.. .++|+||.. |||+||..-++....... ....|.+...................+ -.++|++.+.|
T Consensus 117 ~el~~fL~g---~vLVaHNA~-FD~~FL~~e~~r~~~~a~~~n~~~~r~~~~~~~~~rr~~~g~~p~p-~~~iDTL~LAR 191 (377)
T PRK05601 117 KPLDRLIDG---RTLILHNAP-RTWGFIVSEAKRAMNAAARANRNRNRGNRRGGRGRRRQRVGHIPKP-VVIVDTLATAR 191 (377)
T ss_pred HHHHHHhCC---CEEEEECcH-HHHHHHHHHHHHhhhhhhhcccccccccccccccccccccCCCCCC-CCEEEhHHHHH
Confidence 999999864 489999985 999999987765433211 000000000000000000111122222 35799999999
Q ss_pred hhh-cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHH--HHHHHHHHHHHHHhhcc
Q psy5921 537 HEV-NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTV--EHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 537 ~el-~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl--~Y~l~Dv~l~l~Ll~kL 599 (1200)
..+ .+.+|+|++||.++ |-..+.. -..+ .|...- +.+..|+.++.+|+.++
T Consensus 192 rl~p~l~~~rL~~La~~l-Gi~~p~~-~A~~----------~Ra~~p~~~l~~~Da~ll~~l~~~~ 245 (377)
T PRK05601 192 RQGVALDDIRIRGVAHTL-GLDAPAA-EASV----------ERAQVPHRQLCREETLLVARLYFAL 245 (377)
T ss_pred HHcCCCCCCCHHHHHHHh-CCCCCch-hhhh----------hhhcCChhhhhhHHHHHHHHHHHHh
Confidence 876 68999999999984 4333221 0111 011111 22347999999998765
No 65
>cd06138 ExoI_N N-terminal DEDDh 3'-5' exonuclease domain of Escherichia coli exonuclease I and similar proteins. This subfamily is composed of the N-terminal domain of Escherichia coli exonuclease I (ExoI) and similar proteins. ExoI is a monomeric enzyme that hydrolyzes single stranded DNA in the 3' to 5' direction. It plays a role in DNA recombination and repair. It primarily functions in repairing frameshift mutations. The N-terminal domain of ExoI is a DEDDh-type DnaQ-like 3'-5 exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The ExoI structure is unique among DnaQ family enzymes in that there is a large distance between the two metal ions required for catalysis and the catalytic histidine is oriented away from the active site.
Probab=97.15 E-value=0.0028 Score=67.66 Aligned_cols=102 Identities=13% Similarity=0.062 Sum_probs=63.1
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCC--CCcC----CC-CCeEEEE-cCCHHHHHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESE--LPEV----RT-KPIQMHF-VSNEKELFS 458 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~--~p~~----~~-~~~~V~~-~~nEkeLL~ 458 (1200)
+.||+||++ ++ |.+|+|+.|++...+.... .....-+.+++... .+.. .. ..-.+.- -..+.+++.
T Consensus 1 ~~~D~ETTG---l~--~~~d~Iieig~v~v~~~~~-~~~~~~~~v~p~~~~~~~~~a~~ihGIt~e~l~~~~~~~~~~l~ 74 (183)
T cd06138 1 LFYDYETFG---LN--PSFDQILQFAAIRTDENFN-EIEPFNIFCRLPPDVLPSPEALIVTGITPQQLLKEGLSEYEFIA 74 (183)
T ss_pred CEEEeecCC---CC--CCCCceEEEEEEEECCCCC-CccceeEEEeCCCCCCCCHHHHHHhCCCHHHHHhcCCCHHHHHH
Confidence 368999995 53 5789999999876543211 11111234444321 1111 00 1112333 356888999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCC
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN 495 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~ 495 (1200)
.|..++.+ ..++++|||...||+++|..=+..++.+
T Consensus 75 ~~~~~~~~-~~~~lVahn~~~FD~~fL~~~~~r~~~~ 110 (183)
T cd06138 75 KIHRLFNT-PGTCIVGYNNIRFDDEFLRFAFYRNLYD 110 (183)
T ss_pred HHHHHHcc-CCCcEEeeCchhhHHHHHHHHHHHCCCc
Confidence 99999874 3458999997789999998777766654
No 66
>cd06131 DNA_pol_III_epsilon_Ecoli_like DEDDh 3'-5' exonuclease domain of the epsilon subunit of Escherichia coli DNA polymerase III and similar proteins. This subfamily is composed of the epsilon subunit of Escherichia coli DNA polymerase III (Pol III) and similar proteins. Pol III is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. It is a holoenzyme complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The epsilon
Probab=97.15 E-value=0.0039 Score=65.12 Aligned_cols=159 Identities=15% Similarity=0.130 Sum_probs=97.5
Q ss_pred EEEEEEeccCCCCCCCC-CCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHHHHHHHH
Q psy5921 387 LAVEIHAISRALLKPDP-AYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEKELFSIF 460 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp-~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEkeLL~~F 460 (1200)
+.||+||++ + +| ..++|+.|++..-.+.... ....-..++|....+.. ....-.+.......+.+..|
T Consensus 2 v~~D~ETTG---l--~~~~~~~iieig~v~v~~~~~~-~~~~~~~v~P~~~i~~~~~~ihGIt~e~l~~~~~~~~v~~~l 75 (167)
T cd06131 2 IVLDTETTG---L--DPREGHRIIEIGCVELINRRLT-GNTFHVYINPERDIPEEAFKVHGITDEFLADKPKFAEIADEF 75 (167)
T ss_pred EEEEeeCCC---C--CCCCCCeEEEEEEEEEECCcEe-ccEEEEEECCCCCCCHHHHHHhCCCHHHHhcCCCHHHHHHHH
Confidence 579999995 3 34 5689999998753332210 01113356665433211 00111233445678999999
Q ss_pred HHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhc
Q psy5921 461 IENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVN 540 (1200)
Q Consensus 461 ~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~ 540 (1200)
.+++.. .+++|||+ .||+.+|..-+..+++.... ......+|+.+.++..+.
T Consensus 76 ~~~l~~---~~lv~hn~-~fD~~~l~~~~~~~~~~~~~------------------------~~~~~~idt~~~~~~~~~ 127 (167)
T cd06131 76 LDFIRG---AELVIHNA-SFDVGFLNAELSLLGLGKKI------------------------IDFCRVIDTLALARKKFP 127 (167)
T ss_pred HHHHCC---CeEEEeCh-HHhHHHHHHHHHHhCCCccc------------------------ccCCCceEhHHHHHHHcC
Confidence 988754 56899998 69999998888877653210 011235788888887665
Q ss_pred CCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 541 LQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 541 L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
-.+++|+++++++ |-+.... -.+..+.|+..+.+|+.+|
T Consensus 128 ~~~~~L~~l~~~~-~i~~~~~-------------------~~H~Al~Da~~~a~l~~~l 166 (167)
T cd06131 128 GKPNSLDALCKRF-GIDNSHR-------------------TLHGALLDAELLAEVYLEL 166 (167)
T ss_pred CCCCCHHHHHHHC-CCCCCCC-------------------CCCChHHHHHHHHHHHHHh
Confidence 5678999999875 3211000 0122467888888887654
No 67
>cd06130 DNA_pol_III_epsilon_like an uncharacterized bacterial subgroup of the DEDDh 3'-5' exonuclease domain family with similarity to the epsilon subunit of DNA polymerase III. This subfamily is composed of uncharacterized bacterial proteins with similarity to the epsilon subunit of DNA polymerase III (Pol III), a multisubunit polymerase which is the main DNA replicating enzyme in bacteria, functioning as the chromosomal replicase. The Pol III holoenzyme is a complex of ten different subunits, three of which (alpha, epsilon, and theta) compose the catalytic core. The Pol III epsilon subunit, encoded by the dnaQ gene, is a DEDDh-type 3'-5' exonuclease which is responsible for the proofreading activity of the polymerase, increasing the fidelity of DNA synthesis. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that ser
Probab=97.15 E-value=0.0039 Score=64.11 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=83.6
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-C----CCCeEEEEcCCHHHHHHHHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-R----TKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-~----~~~~~V~~~~nEkeLL~~F~ 461 (1200)
..+|+||++ +..++|+.|+++..+++.. ....-..++|....+.. . -..-.+.-.....+.+..|.
T Consensus 2 v~~D~Ettg-------~~~~~ii~ig~v~~~~~~~--~~~~~~~i~p~~~~~~~~~~i~GIt~e~l~~~~~~~~v~~~l~ 72 (156)
T cd06130 2 VAIDFETAN-------ADRASACSIGLVKVRDGQI--VDTFYTLIRPPTRFDPFNIAIHGITPEDVADAPTFPEVWPEIK 72 (156)
T ss_pred EEEEEeCCC-------CCCCceEEEEEEEEECCEE--EEEEEEEeCcCCCCChhhccccCcCHHHHhcCCCHHHHHHHHH
Confidence 579999994 2358899999976654321 11112345554432111 0 00111223345678899999
Q ss_pred HHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh-c
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV-N 540 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el-~ 540 (1200)
+++.. ++++|||. .||+.+|.+-+..+|++.. -...+|++..++..+ .
T Consensus 73 ~~l~~---~~lv~hn~-~fD~~~l~~~~~~~g~~~~---------------------------~~~~idt~~~~~~~~~~ 121 (156)
T cd06130 73 PFLGG---SLVVAHNA-SFDRSVLRAALEAYGLPPP---------------------------PYQYLCTVRLARRVWPL 121 (156)
T ss_pred HHhCC---CEEEEeCh-HHhHHHHHHHHHHcCCCCC---------------------------CCCEEEHHHHHHHHhcc
Confidence 99865 79999998 7999999998888776532 011678888888765 3
Q ss_pred CCCCCHHHHHHHH
Q psy5921 541 LQSYTFENIMYHV 553 (1200)
Q Consensus 541 L~SYsLe~Va~~v 553 (1200)
+.+|+|++++..+
T Consensus 122 ~~~~~L~~l~~~~ 134 (156)
T cd06130 122 LPNHKLNTVAEHL 134 (156)
T ss_pred CCCCCHHHHHHHc
Confidence 6889999998874
No 68
>cd06127 DEDDh DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.
Probab=97.14 E-value=0.0064 Score=61.55 Aligned_cols=127 Identities=17% Similarity=0.139 Sum_probs=80.7
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCC-CcCC----CCCeEEEEcCCHHHHHHHHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESEL-PEVR----TKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~-p~~~----~~~~~V~~~~nEkeLL~~F~ 461 (1200)
+.+|+||++ + +|..++|+.|+++..+.. .+.....-..++|.... +... .....+..-....+.+..|.
T Consensus 1 v~~D~Ettg---~--~~~~~~iiei~~v~~~~~-~~~~~~~~~~i~p~~~~~~~~~~~~gi~~~~~~~~~~~~~~~~~~~ 74 (159)
T cd06127 1 VVFDTETTG---L--DPKKDRIIEIGAVKVDGG-IEIVERFETLVNPGRPIPPEATAIHGITDEMLADAPPFEEVLPEFL 74 (159)
T ss_pred CeEEeeCCC---c--CCCCCeEEEEEEEEEECC-cChhhhhheeeCcCCcCCHhheeccCCCHHHHhcCCCHHHHHHHHH
Confidence 368999995 3 457899999999877653 11111112234544322 1100 00111223346778888888
Q ss_pred HHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh-c
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV-N 540 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el-~ 540 (1200)
+++.. ++++|||+ .||+.+|...+..++.+.+ ....+|+...++..+ .
T Consensus 75 ~~l~~---~~~v~~n~-~fD~~~l~~~~~~~~~~~~---------------------------~~~~iDt~~~~~~~~~~ 123 (159)
T cd06127 75 EFLGG---RVLVAHNA-SFDLRFLNRELRRLGGPPL---------------------------PNPWIDTLRLARRLLPG 123 (159)
T ss_pred HHHCC---CEEEEeCc-HhhHHHHHHHHHHhCCCCC---------------------------CCCeeEHHHHHHHHcCC
Confidence 88865 89999999 7999999999998872221 233789998888765 3
Q ss_pred CCCCCHHHHH
Q psy5921 541 LQSYTFENIM 550 (1200)
Q Consensus 541 L~SYsLe~Va 550 (1200)
..+++|..+.
T Consensus 124 ~~~~~l~~~~ 133 (159)
T cd06127 124 LRSHRLGLLL 133 (159)
T ss_pred CCcCchHHHH
Confidence 4567777763
No 69
>PRK06195 DNA polymerase III subunit epsilon; Validated
Probab=97.11 E-value=0.0038 Score=72.29 Aligned_cols=130 Identities=8% Similarity=0.068 Sum_probs=87.6
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCC-C-CcC---C-CCCeEEEEcCCHHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESE-L-PEV---R-TKPIQMHFVSNEKELF 457 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~-~-p~~---~-~~~~~V~~~~nEkeLL 457 (1200)
++.+.||+||++ +..|+|+.|++....++.. ....-.+++|... . |.. . ..+..|.-.....+.+
T Consensus 1 ~~~vviD~ETTg-------~~~d~IieIgav~v~~g~i--~~~f~~lv~P~~~~~~~~~~~IhGIT~e~v~~ap~f~ev~ 71 (309)
T PRK06195 1 MNFVAIDFETAN-------EKRNSPCSIGIVVVKDGEI--VEKVHYLIKPKEMRFMPINIGIHGIRPHMVEDELEFDKIW 71 (309)
T ss_pred CcEEEEEEeCCC-------CCCCceEEEEEEEEECCEE--EEEEEEEECCCCCCCChhheeccCcCHHHHhCCCCHHHHH
Confidence 357899999982 3579999999876654321 1122345666431 1 211 0 1112233445778889
Q ss_pred HHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh
Q psy5921 458 SIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 537 (1200)
Q Consensus 458 ~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~ 537 (1200)
..|.+++. -++++|||. .||+.+|..-+..++++.. ....+|+++.+|.
T Consensus 72 ~~~~~fl~---~~~lVaHNa-~FD~~fL~~~~~r~~~~~~---------------------------~~~~idT~~lar~ 120 (309)
T PRK06195 72 EKIKHYFN---NNLVIAHNA-SFDISVLRKTLELYNIPMP---------------------------SFEYICTMKLAKN 120 (309)
T ss_pred HHHHHHhC---CCEEEEECc-HHHHHHHHHHHHHhCCCCC---------------------------CCCEEEHHHHHHH
Confidence 99988884 489999998 6999999887777766432 0125799998887
Q ss_pred hh-cCCCCCHHHHHHHH
Q psy5921 538 EV-NLQSYTFENIMYHV 553 (1200)
Q Consensus 538 el-~L~SYsLe~Va~~v 553 (1200)
.+ .+.+|+|++++.++
T Consensus 121 l~~~~~~~~L~~L~~~~ 137 (309)
T PRK06195 121 FYSNIDNARLNTVNNFL 137 (309)
T ss_pred HcCCCCcCCHHHHHHHc
Confidence 66 46899999999885
No 70
>PRK09145 DNA polymerase III subunit epsilon; Validated
Probab=96.95 E-value=0.013 Score=63.52 Aligned_cols=101 Identities=14% Similarity=0.058 Sum_probs=65.7
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-C----CCCeEEEEcCCHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-R----TKPIQMHFVSNEKEL 456 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-~----~~~~~V~~~~nEkeL 456 (1200)
.+-..+.+|+||++ + +|..|+|+.|+++..++........--..++|....+.. . .....+.-...+.+.
T Consensus 27 ~~~~~vviD~ETTG---l--~~~~d~IieIgaV~~~~~~~~~~~~f~~~i~p~~~i~~~~~~ihGIt~~~l~~~~~~~~v 101 (202)
T PRK09145 27 PPDEWVALDCETTG---L--DPRRAEIVSIAAVKIRGNRILTSERLELLVRPPQSLSAESIKIHRLRHQDLEDGLSEEEA 101 (202)
T ss_pred CCCCEEEEEeECCC---C--CCCCCceEEEEEEEEECCEEeecCceEEEECCCCCCCHhHhhhcCcCHHHHhcCCCHHHH
Confidence 34588999999995 4 456899999998766543210001112346665332111 0 011123345678999
Q ss_pred HHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHH
Q psy5921 457 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV 491 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~ 491 (1200)
+..|.+++. ..+++|||. .||+.+|..-++.
T Consensus 102 l~~~~~~i~---~~~lv~hn~-~fD~~fL~~~~~~ 132 (202)
T PRK09145 102 LRQLLAFIG---NRPLVGYYL-EFDVAMLNRYVRP 132 (202)
T ss_pred HHHHHHHHc---CCeEEEeCH-HHHHHHHHHHHHH
Confidence 999999985 368999997 6999999888765
No 71
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=96.94 E-value=0.01 Score=77.84 Aligned_cols=131 Identities=8% Similarity=0.053 Sum_probs=89.7
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-----CCCeEEEEcCCHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-----TKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-----~~~~~V~~~~nEkeLL~~ 459 (1200)
+.+.+|+||++ . +|..|+|+.|+++..+++.. ..+.-..++|....|... ..+-.+.-.....+.+..
T Consensus 1 ~~vvvD~ETTG---~--~~~~~~IIeig~v~v~~~~i--~~~f~~~v~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~~ 73 (850)
T TIGR01407 1 RYAVVDLETTG---T--QLSFDKIIQIGIVVVEDGEI--VDTFHTDVNPNEPIPPFIQELTGISDNMLQQAPYFSQVAQE 73 (850)
T ss_pred CEEEEEEECCC---C--CCCCCeEEEEEEEEEECCEE--EEEEEEEeCCCCCCChhhhhhcCcCHHHHhCCCCHHHHHHH
Confidence 35789999995 3 46779999999987654321 112234566654332210 011223345678899999
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el 539 (1200)
|.+++. ..+++|||+ .||+++|.+-+..+|++.+ ....+|+....+..+
T Consensus 74 l~~~l~---~~~~VahN~-~fD~~fL~~~~~~~g~~~~---------------------------~~~~iDt~~l~~~~~ 122 (850)
T TIGR01407 74 IYDLLE---DGIFVAHNV-HFDLNFLAKALKDCGYEPL---------------------------PKPRIDTVELAQIFF 122 (850)
T ss_pred HHHHhC---CCEEEEeCc-HHHHHHHHHHHHHcCCCCC---------------------------CCCeEeHHHHHHHhc
Confidence 998874 579999998 6999999998887776532 111578888777655
Q ss_pred -cCCCCCHHHHHHHH
Q psy5921 540 -NLQSYTFENIMYHV 553 (1200)
Q Consensus 540 -~L~SYsLe~Va~~v 553 (1200)
...+|+|.+++.++
T Consensus 123 p~~~~~~L~~l~~~~ 137 (850)
T TIGR01407 123 PTEESYQLSELSEAL 137 (850)
T ss_pred CCCCCCCHHHHHHHC
Confidence 46899999998884
No 72
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.92 E-value=0.01 Score=78.35 Aligned_cols=132 Identities=11% Similarity=0.086 Sum_probs=90.1
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-----CCCeEEEEcCCHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-----TKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-----~~~~~V~~~~nEkeLL~~ 459 (1200)
+.+.+|+||++ ..|+. .|+|+.|+++.-.++.. ..+.-..++|...+|... ..+..+.-.....+.+..
T Consensus 4 ~~vvvD~ETTG---~~p~~-~d~IIeigav~v~~~~i--~~~f~~~v~P~~~i~~~~~~ltGIt~~~l~~ap~f~ev~~~ 77 (928)
T PRK08074 4 RFVVVDLETTG---NSPKK-GDKIIQIAAVVVEDGEI--LERFSSFVNPERPIPPFITELTGISEEMVKQAPLFEDVAPE 77 (928)
T ss_pred CEEEEEEeCCC---CCCCC-CCcEEEEEEEEEECCEE--EEEEEEEECcCCCCCHHHhhcCCCCHHHHhcCCCHHHHHHH
Confidence 57899999995 33322 38999999987654421 112234567654443210 111223445678889999
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV 539 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el 539 (1200)
|.+++. ..+++|||+ .|||++|.+-+...|++.+ .+ -.+|+..+.+..+
T Consensus 78 l~~~l~---~~~~VaHN~-~FD~~fL~~~~~~~g~~~~--------------------------~~-~~iDt~~la~~~~ 126 (928)
T PRK08074 78 IVELLE---GAYFVAHNV-HFDLNFLNEELERAGYTEI--------------------------HC-PKLDTVELARILL 126 (928)
T ss_pred HHHHhC---CCeEEEECh-HHHHHHHHHHHHHcCCCCC--------------------------CC-CeeeHHHHHHHhc
Confidence 999884 578999998 5999999888887776532 01 1689988888765
Q ss_pred -cCCCCCHHHHHHHH
Q psy5921 540 -NLQSYTFENIMYHV 553 (1200)
Q Consensus 540 -~L~SYsLe~Va~~v 553 (1200)
.+.+|+|++++.++
T Consensus 127 p~~~~~~L~~l~~~l 141 (928)
T PRK08074 127 PTAESYKLRDLSEEL 141 (928)
T ss_pred CCCCCCCHHHHHHhC
Confidence 57899999999885
No 73
>cd06125 DnaQ_like_exo DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily. The DnaQ-like exonuclease superfamily is a structurally conserved group of 3'-5' exonucleases, which catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. It is also called the DEDD superfamily, after the four invariant acidic residues present in the catalytic site of its members. The superfamily consists of DNA- and RNA-processing enzymes such as the proofreading domains of DNA polymerases, other DNA exonucleases, RNase D, RNase T, Oligoribonuclease and RNA exonucleases (REX). The DnaQ-like exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, which are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation patterns of the three motifs may vary among different subfamilies. DnaQ-like exonucleases are classified as DEDDy
Probab=96.79 E-value=0.0058 Score=58.53 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=52.2
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhh
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQ 466 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~ 466 (1200)
++|||||.+ .++..++|++|++...++.. . ... . |..+++.
T Consensus 1 ~~~DiEt~~-----~~~~~~~i~~i~~~~~~~~~-------~------------------~~~-~--------f~~~l~~ 41 (96)
T cd06125 1 IAIDTEATG-----LDGAVHEIIEIALADVNPED-------T------------------AVI-D--------LKDILRD 41 (96)
T ss_pred CEEEEECCC-----CCCCCCcEEEEEEEEccCCC-------E------------------EEe-h--------HHHHHhh
Confidence 479999985 24678999999976532110 1 111 1 7888888
Q ss_pred hCCCEEEecCcccccHHHHHHHHHHhCCC
Q psy5921 467 WDPDILIGYEIETLSWGYLLERGYVLGLN 495 (1200)
Q Consensus 467 ~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~ 495 (1200)
..|.+++|||. .||++||.++++.++++
T Consensus 42 ~~~~v~V~hn~-~fD~~fL~~~~~~~~~~ 69 (96)
T cd06125 42 KPLAILVGHNG-SFDLPFLNNRCAELGLK 69 (96)
T ss_pred CCCCEEEEeCc-HHhHHHHHHHHHHcCCC
Confidence 88899999999 89999999999988775
No 74
>TIGR00573 dnaq exonuclease, DNA polymerase III, epsilon subunit family. All proteins in this family for which functions are known are components of the DNA polymerase III complex (epsilon subunit). There is, however, an outgroup that includes paralogs in some gamma-proteobacteria and the n-terminal region of DinG from some low GC gram positive bacteria. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=96.71 E-value=0.012 Score=64.67 Aligned_cols=160 Identities=12% Similarity=-0.047 Sum_probs=95.8
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC----C-CCCeEEEEcCCHHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV----R-TKPIQMHFVSNEKELF 457 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~----~-~~~~~V~~~~nEkeLL 457 (1200)
..+.+.||+||++ + +|..| |+.|+++...+... .....-..++|....+.. . -....+.-.....+++
T Consensus 6 ~~~fvv~D~ETTG---l--~~~~~-IIeIgav~v~~~~~-~~~~f~~li~P~~~i~~~a~~ihGIt~e~l~~~p~~~ev~ 78 (217)
T TIGR00573 6 LDTETTGDNETTG---L--YAGHD-IIEIGAVEIINRRI-TGNKFHTYIKPDRPIDPDAIKIHGITDDMLKDKPDFKEIA 78 (217)
T ss_pred ecCEEEEEecCCC---C--CCCCC-EEEEEEEEEECCCE-eeeEEEEEECcCCCCCHHHHhhcCCCHHHHcCCCCHHHHH
Confidence 3577899999995 4 45677 99999876333211 011123355665433211 0 0112233446788999
Q ss_pred HHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh
Q psy5921 458 SIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 537 (1200)
Q Consensus 458 ~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~ 537 (1200)
..|.+++. .++++|||. .||+++|.+-+..++.... .....||+...++.
T Consensus 79 ~~~~~~~~---~~~lVaHNa-~FD~~fL~~~~~r~~~~~~--------------------------~~~~~~dtl~l~~~ 128 (217)
T TIGR00573 79 EDFADYIR---GAELVIHNA-SFDVGFLNYEFSKLYKVEP--------------------------KTNDVIDTTDTLQY 128 (217)
T ss_pred HHHHHHhC---CCEEEEecc-HHHHHHHHHHHHHhcCCCC--------------------------CccceecHHHHHHH
Confidence 99999884 478999998 7999999887776533211 01125676665554
Q ss_pred h---hcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 538 E---VNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 538 e---l~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
. +.-.+++|++++.++ |-... . +-..-.+.||..+.+|+.++
T Consensus 129 ~~~~~~~~~~~L~~l~~~~-gl~~~-------------~------~~~H~Al~DA~~ta~l~~~l 173 (217)
T TIGR00573 129 ARPEFPGKRNTLDALCKRY-EITNS-------------H------RALHGALADAFILAKLYLVM 173 (217)
T ss_pred HHHhCCCCCCCHHHHHHHc-CCCCC-------------C------cccCCHHHHHHHHHHHHHHH
Confidence 3 333578999998775 32110 0 01222467888888888776
No 75
>PRK05168 ribonuclease T; Provisional
Probab=96.59 E-value=0.03 Score=61.37 Aligned_cols=139 Identities=12% Similarity=0.060 Sum_probs=84.1
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecC---CCCCCCceEEEEEecCC--CCCCcCC--CCCeE----EEEcC
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT---CPPEEDRKVGIILIGQE--SELPEVR--TKPIQ----MHFVS 451 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~---d~~~d~~~~gv~~v~~~--~~~p~~~--~~~~~----V~~~~ 451 (1200)
.++.+.||+||++ + +|.+|+|+.|++.... ++........-..++|. ..+|..- -.+.. +..-.
T Consensus 16 ~~~~vv~D~ETTG---l--~~~~d~IieIgaV~v~~d~~g~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~e~~~~~~~ 90 (211)
T PRK05168 16 GFLPVVIDVETAG---F--NAKTDALLEIAAVTLKMDEQGWLYPDETLHFHVEPFEGANLEPEALAFNGIDPDNPLRGAV 90 (211)
T ss_pred CCceEEEEeeCCC---C--CCCCCEEEEEeEEEEEecCCCcEeccceEEEEECCCCCCCCCHHHHhhcCCCchhhhhcCC
Confidence 5788999999995 4 4567999999987543 12111111223456663 1122110 01111 11223
Q ss_pred CHHHHHHHHHHHHhhh------CCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecc
Q psy5921 452 NEKELFSIFIENVRQW------DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPG 525 (1200)
Q Consensus 452 nEkeLL~~F~~~I~~~------DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~G 525 (1200)
.+.+.+..|+.++..+ +=.+++|||. .||+.+|.+-++.+++... + ...
T Consensus 91 ~~~~~l~~~~~~l~~~~~~~~~~~~~lVaHNa-~FD~~fL~~~~~r~~~~~~------~------------------~~~ 145 (211)
T PRK05168 91 SEKEALHEIFKMVRKGIKASGCNRAILVAHNA-HFDLSFLMAAAERAGLKRN------P------------------FHP 145 (211)
T ss_pred ChHHHHHHHHHHHHHHHHhcccCCceEEEecc-HHhHHHHHHHHHHhCCCCC------C------------------CCC
Confidence 5666777777777642 1258999998 6999999998888776311 0 001
Q ss_pred eEEeehHHHHHhhhcCCCCCHHHHHHHH
Q psy5921 526 RIVINLWRLLRHEVNLQSYTFENIMYHV 553 (1200)
Q Consensus 526 RlvlDl~r~~r~el~L~SYsLe~Va~~v 553 (1200)
--++|+.+++|..+ ..++|++++.++
T Consensus 146 ~~~iDt~~lar~~~--~~~~L~~l~~~~ 171 (211)
T PRK05168 146 FSTFDTATLSGLAL--GQTVLAKACQAA 171 (211)
T ss_pred CcEeeHHHHHHHHc--CCCCHHHHHHHC
Confidence 11789999888654 346899888763
No 76
>TIGR01298 RNaseT ribonuclease T. in gamma-subdivision Proteobacteria such as Escherichia coli and Xylella fastidiosa. Ribonuclease T is homologous to the DNA polymerase III alpha chain. It can liberate AMP from the common C-C-A terminus of uncharged tRNA. It appears also to be involved in RNA maturation. It also acts as a 3' to 5' single-strand DNA-specific exonuclease; it is distinctive for its ability to remove residues near a double-stranded stem. Ribonuclease T is a high copy suppressor in E. coli of a uv-repair defect caused by deletion of three other single-stranded DNA exonucleases.
Probab=96.58 E-value=0.076 Score=57.74 Aligned_cols=164 Identities=11% Similarity=0.013 Sum_probs=93.4
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecC-C--CCCCCceEEEEEecCC-C-CCCcC-C-CCCe----EEEEcCC
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT-C--PPEEDRKVGIILIGQE-S-ELPEV-R-TKPI----QMHFVSN 452 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~-d--~~~d~~~~gv~~v~~~-~-~~p~~-~-~~~~----~V~~~~n 452 (1200)
++=+.||+||++ ++ |.+|+|+.|++..-. + +........-..++|. + .+|.. . ..++ .+.-...
T Consensus 8 ~~~vv~D~ETTG---l~--~~~d~IieIgav~v~~~~~g~i~~~~~f~~~v~p~p~~~i~~~a~~ihGIt~~~~~~~~~~ 82 (200)
T TIGR01298 8 YLPVVVDVETGG---FN--AKTDALLEIAAITLKMDEQGWLFPDTTLHFHVEPFEGANIQPEALEFTGIDLDHPLRGAVS 82 (200)
T ss_pred CeeEEEEeeCCC---CC--CCCCeEEEEEEEEEEEcCCCcEeecceeEEEEcCCCCCCCCHHHHHccCCChhhhhhcCcc
Confidence 345789999995 54 568999999977532 1 1110001123345543 1 22211 0 0011 1222345
Q ss_pred HHHHHHHHHHHHhhh------CCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecce
Q psy5921 453 EKELFSIFIENVRQW------DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGR 526 (1200)
Q Consensus 453 EkeLL~~F~~~I~~~------DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GR 526 (1200)
+.+.+..|+..+..+ +-.+++|||.. ||+.+|.+=++.++.... + ..-.
T Consensus 83 ~~~~~~~~~~~l~~~~~~~~~~~~~lVaHNa~-FD~~fL~~~~~r~~~~~~------~------------------~~~~ 137 (200)
T TIGR01298 83 EYEALHEIFKVVRKAMKASGCQRAILVGHNAN-FDLGFLNAAVERTSLKRN------P------------------FHPF 137 (200)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCCEEEEECch-hhHHHHHHHHHHhCCCCC------C------------------CCCC
Confidence 556677777776432 33589999985 999999877777765310 0 0011
Q ss_pred EEeehHHHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 527 IVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 527 lvlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
-.+|+..+.|..+ .+++|+++++.+ |-..... -.+-.+.|+..+.+|+.++
T Consensus 138 ~~lDTl~lar~~~--~~~~L~~l~~~~-gi~~~~~-------------------~~H~Al~Da~ata~lf~~l 188 (200)
T TIGR01298 138 STFDTATLAGLAY--GQTVLAKACQAA-GXDFDST-------------------QAHSALYDTEKTAELFCEI 188 (200)
T ss_pred cEEEHHHHHHHHc--CcccHHHHHHHc-CCCcccc-------------------chhhhHHhHHHHHHHHHHH
Confidence 2789999888654 457899988753 3221000 1223467888888888765
No 77
>cd06134 RNaseT DEDDh 3'-5' exonuclease domain of RNase T. RNase T is a DEDDh-type DnaQ-like 3'-5' exoribonuclease E implicated in the 3' maturation of small stable RNAs and 23srRNA, and in the end turnover of tRNA. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase T is related to the proofreading domain of DNA polymerase III. Despite its important role, RNase T is mainly found only in gammaproteobacteria. It is speculated that it might have originated from DNA polymerase III at the time the gamma division of proteobacteria diverged from other bacteria. RNase T is a homodimer with the catalytic residues of one monomer contacting a large basic patch on the other monomer to form a functional active site.
Probab=96.51 E-value=0.035 Score=59.77 Aligned_cols=162 Identities=13% Similarity=0.073 Sum_probs=94.0
Q ss_pred EEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCC---CCCCceEEEEEecCC--CCCCcC-C-CCCeE----EEEcCCHH
Q psy5921 386 VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCP---PEEDRKVGIILIGQE--SELPEV-R-TKPIQ----MHFVSNEK 454 (1200)
Q Consensus 386 vlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~---~~d~~~~gv~~v~~~--~~~p~~-~-~~~~~----V~~~~nEk 454 (1200)
-+.||+||++ + +|.+|+|+.|++....++ ........-+.++|. ..+|.. . -.++. +..-..+.
T Consensus 7 ~vv~D~ETTG---l--~~~~d~Iieigav~v~~~~~~~i~~~~~f~~lv~P~~~~~i~~~~~~ihGIt~~~~~~~~~~~~ 81 (189)
T cd06134 7 PVVVDVETGG---F--NPQTDALLEIAAVTLEMDEQGNLYPDETFHFHILPFEGANLDPAALEFNGIDPFHPFRFAVDEK 81 (189)
T ss_pred eEEEEecCCC---C--CCCCCeEEEEEEEEEEECCCCceeccceEEEEEcCCCCCCCCHHHHhhcCCCchhhhccccchH
Confidence 3689999995 4 457899999998754321 111111223456663 222211 0 00110 11223445
Q ss_pred HHHHHHHHHHhhhC------CCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEE
Q psy5921 455 ELFSIFIENVRQWD------PDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIV 528 (1200)
Q Consensus 455 eLL~~F~~~I~~~D------PDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlv 528 (1200)
+-+..|+..+.++- =.+++|||. .||+.+|..-++.+++... + ....-.
T Consensus 82 ~~~~~~~~~l~~~~~~~~~~~~~lVaHna-~FD~~fL~~~~~~~~~~~~------~------------------~~~~~~ 136 (189)
T cd06134 82 EALKEIFKPIRKALKAQGCTRAILVGHNA-HFDLGFLNAAVARCKIKRN------P------------------FHPFST 136 (189)
T ss_pred HHHHHHHHHHHHHHhhcccCCCeEEEecc-hhhHHHHHHHHHHhCCCCC------C------------------CCCCcE
Confidence 66777777776431 258999998 5999999998888877310 0 001126
Q ss_pred eehHHHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 529 INLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 529 lDl~r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+|+.++.+..+ .+++|++++..+ |...... . .+-.+.|+..+.+|+.++
T Consensus 137 lDt~~la~~~~--~~~~L~~l~~~~-gi~~~~~-----------~--------~H~Al~DA~ata~lf~~l 185 (189)
T cd06134 137 FDTATLAGLAY--GQTVLAKACQAA-GIEFDNK-----------E--------AHSALYDTQKTAELFCKI 185 (189)
T ss_pred EEHHHHHHHHh--CCCcHHHHHHHC-CCCCCCC-----------C--------CcChHHHHHHHHHHHHHH
Confidence 89999888654 457899988763 3211000 0 122457888888887665
No 78
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=96.40 E-value=0.033 Score=72.62 Aligned_cols=130 Identities=11% Similarity=0.100 Sum_probs=87.1
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHHHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEKELFS 458 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEkeLL~ 458 (1200)
-+.+.+|+||++ +. | .|+|+.|++....++.. ....-..++|...+|.. ...+..+.-.....+.+.
T Consensus 7 ~~~vvvD~ETTG---l~--~-~d~IIeIgaV~v~~g~i--~~~f~~lv~P~~~i~~~~~~ltGIt~e~l~~ap~~~ev~~ 78 (820)
T PRK07246 7 RKYAVVDLEATG---AG--P-NASIIQVGIVIIEGGEI--IDSYTTDVNPHEPLDEHIKHLTGITDQQLAQAPDFSQVAR 78 (820)
T ss_pred CCEEEEEEecCC---cC--C-CCeEEEEEEEEEECCEE--EEEEEEEeCcCCCCCHhHhhcCCCCHHHHhcCCCHHHHHH
Confidence 467899999995 33 3 48999999886554321 11223456765444321 011223445568889999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhh
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE 538 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~e 538 (1200)
.|.+++. -.+++|||+ .||+++|.+-+...|.+.. . ..+|++...+..
T Consensus 79 ~~~~~l~---~~~lVaHN~-~FD~~fL~~~~~~~g~~~~---------------------------~-~~iDT~~la~~~ 126 (820)
T PRK07246 79 HIYDLIE---DCIFVAHNV-KFDANLLAEALFLEGYELR---------------------------T-PRVDTVELAQVF 126 (820)
T ss_pred HHHHHhC---CCEEEEECc-HHHHHHHHHHHHHcCCCCC---------------------------C-CceeHHHHHHHH
Confidence 9998875 478999998 5999999765554444321 0 137888888876
Q ss_pred h-cCCCCCHHHHHHHH
Q psy5921 539 V-NLQSYTFENIMYHV 553 (1200)
Q Consensus 539 l-~L~SYsLe~Va~~v 553 (1200)
+ .+.+|+|++++.++
T Consensus 127 ~p~~~~~~L~~L~~~l 142 (820)
T PRK07246 127 FPTLEKYSLSHLSREL 142 (820)
T ss_pred hCCCCCCCHHHHHHHc
Confidence 6 46899999999874
No 79
>KOG1798|consensus
Probab=96.27 E-value=0.29 Score=64.54 Aligned_cols=269 Identities=11% Similarity=0.150 Sum_probs=150.6
Q ss_pred hhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhccccccccc-----cCCChh--hhcccC-C---CCCCCeee
Q psy5921 596 IEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVA-----VSPSIK--QRAHMR-A---PESLPLIL 664 (1200)
Q Consensus 596 l~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~-----p~ps~~--~~~~~~-~---~~~GglVl 664 (1200)
+.....+...++++|.+++|+...-..-.++-+.-++.|..++.|.++ +.|+.. +..... + ......|.
T Consensus 1586 ~a~~~wl~~~i~~SRY~~VPigNl~~D~~~f~iD~~faR~Lrk~~~vLW~s~~~~PDlGGie~d~~~~s~~~~~~s~~~~ 1665 (2173)
T KOG1798|consen 1586 LASGSWLSHRIKLSRYSHVPIGNLPEDWLTFIIDLFFARKLRKHNHVLWWSKNGVPDLGGIENDEMLLSSELQTTSDTVE 1665 (2173)
T ss_pred HhHHHHHHHHHHHHHhcCCcccCCchHHHHHHHHHHHHHHHHhcCeeEEecCCCCCCCCcccchhhhhhHHhcccccchh
Confidence 334456778899999999999876544556788899999999988764 112211 110000 0 00012333
Q ss_pred ccCCCcccCCeEEeecccccHHHHHHcCCCccccCcc--cccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEe
Q psy5921 665 EPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR--VEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFV 742 (1200)
Q Consensus 665 eP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~--~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fv 742 (1200)
--.+|+|++..+-|+..-|- -.|++.. +.+..+.+- +| ....+.+.. -+..++.| ++
T Consensus 1666 ln~~G~Y~~v~vel~l~nla----------vntll~S~lvne~EG~d~--~g-~~~dv~~~~------~~~d~~~~--~~ 1724 (2173)
T KOG1798|consen 1666 LNRPGAYSTVCVELKLSNLA----------VNTLLQSALVNEMEGADF--LG-VTFDVNDRT------AAEDDLTG--AC 1724 (2173)
T ss_pred hccccccceeEEEEEehHHH----------HHHHHHHhhhhhhhcccc--cc-ccccccccc------hhhccccc--cc
Confidence 35689999855667764332 2233221 111111000 01 011111110 00111222 11
Q ss_pred cCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHH
Q psy5921 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGR 822 (1200)
Q Consensus 743 k~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GR 822 (1200)
-+ .-+... +.+-=.|.++|....+.......++ -++.+..+-.+.+. ++.++|+.+...+-..=+
T Consensus 1725 ~D--e~a~~~---~~f~VLk~llk~~~~d~~~~gN~~A---------D~iv~~l~~Wl~sp-ss~L~dpaL~~~vh~lmk 1789 (2173)
T KOG1798|consen 1725 YD--ETALCA---QAFRVLKQLLKRWVLDAAKSGNIYA---------DLIVQHLSRWLRSP-SSKLHDPALHRHVHVLMK 1789 (2173)
T ss_pred cc--cccchH---HHHHHHHHHHHHHHHHHHhhcchhH---------HHHHHHHHHHHcCC-cccccCHHHHHHHHHHHH
Confidence 11 011111 1111122223333222111001111 12234555556555 568999999888887777
Q ss_pred HHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHHHHHHHHHHHHHHcc--CCCceeeeeeceechhhcccccee
Q psy5921 823 ETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN--NPTPVKLKFEKVYQPCILQTKKRY 900 (1200)
Q Consensus 823 eiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~--~p~pi~LefEkvy~~~lL~~KKRY 900 (1200)
.++.....-++. .|+.|||.|-+=|-|+++..+.+.|....+-|.+.|... | ..+.|.+-.-|+.++++.+-+|
T Consensus 1790 K~fl~L~~e~~r---lGa~iIyA~~nkili~T~K~~~e~A~~y~e~l~ksi~t~~~f-~~l~i~~~r~wd~llwmD~~n~ 1865 (2173)
T KOG1798|consen 1790 KLFLQLLAELRR---LGAIIIYADFNKILINTGKFSVEAAKAYSEYLLKSISTLPVF-HLLDINPVRYWDSLLWMDAHNY 1865 (2173)
T ss_pred HHHHHHHHHHHh---cCCeEEEecCCEEEEecCCCCHHHHHHHHHHHHHhhhcccch-hheeccHHHHHHHHhhhccccc
Confidence 776666666664 899999999999999999999999999988888888653 2 4578888888888999988886
Q ss_pred EEEE
Q psy5921 901 VGYM 904 (1200)
Q Consensus 901 ag~~ 904 (1200)
-|+.
T Consensus 1866 ~g~~ 1869 (2173)
T KOG1798|consen 1866 GGHA 1869 (2173)
T ss_pred cccc
Confidence 5543
No 80
>PF01612 DNA_pol_A_exo1: 3'-5' exonuclease; InterPro: IPR002562 This domain is responsible for the 3'-5' exonuclease proofreading activity of Escherichia coli DNA polymerase I (polI) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli polI it is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D) [].; GO: 0003676 nucleic acid binding, 0008408 3'-5' exonuclease activity, 0006139 nucleobase-containing compound metabolic process, 0005622 intracellular; PDB: 2HBK_A 2HBJ_A 2HBM_A 2HBL_A 2FC0_A 2FBY_A 2FBX_A 2FBT_A 2FBV_A 1YT3_A ....
Probab=96.23 E-value=0.043 Score=57.05 Aligned_cols=148 Identities=20% Similarity=0.238 Sum_probs=89.2
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENV 464 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I 464 (1200)
.+++||+|+.+ ..+......|..|.++... +++++.+.... ... ++..+..++
T Consensus 21 ~~~a~D~E~~~---~~~~~~~~~~~~iq~~~~~---------~~~i~~~~~~~-----~~~----------~~~~l~~ll 73 (176)
T PF01612_consen 21 KVLAFDTETTG---LDPYSYNPKIALIQLATGE---------GCYIIDPIDLG-----DNW----------ILDALKELL 73 (176)
T ss_dssp SEEEEEEEEET---STSTTSSEEEEEEEEEESC---------EEEEECGTTST-----TTT----------HHHHHHHHH
T ss_pred CeEEEEEEECC---CCccccCCeEEEEEEecCC---------Cceeeeecccc-----ccc----------hHHHHHHHH
Confidence 38999999995 3333345667777766541 23333332211 000 455555555
Q ss_pred hhhCCCE-EEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcCCC
Q psy5921 465 RQWDPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS 543 (1200)
Q Consensus 465 ~~~DPDI-IvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~S 543 (1200)
. ||+| .+|||+ .||+.+|.+. +|+.. +. ++|+ ..+...+....
T Consensus 74 ~--~~~i~kv~~n~-~~D~~~L~~~---~~i~~----------------------------~~-~~D~-~l~~~~l~~~~ 117 (176)
T PF01612_consen 74 E--DPNIIKVGHNA-KFDLKWLYRS---FGIDL----------------------------KN-VFDT-MLAAYLLDPTR 117 (176)
T ss_dssp T--TTTSEEEESSH-HHHHHHHHHH---HTS------------------------------SS-EEEH-HHHHHHTTTST
T ss_pred h--CCCccEEEEEE-echHHHHHHH---hcccc----------------------------CC-ccch-hhhhhcccccc
Confidence 5 6774 789999 4999998887 44432 11 5687 55554443333
Q ss_pred -CCHHHHHHHHcCCCcCCCChHhH-HHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 544 -YTFENIMYHVLHERIPLHSWKLL-TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 544 -YsLe~Va~~vLg~rk~~~s~~~L-~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
++|++++..+|| +. ..+.+.. ..|.... ......+.|+..|+..+++|..+|
T Consensus 118 ~~~L~~L~~~~l~-~~-~~~~~~~~~~~~~~~--~l~~~~~~YAa~D~~~~~~l~~~l 171 (176)
T PF01612_consen 118 SYSLKDLAEEYLG-NI-DLDKKEQMSDWRKAR--PLSEEQIEYAAQDAVVTFRLYEKL 171 (176)
T ss_dssp TSSHHHHHHHHHS-EE-E-GHCCTTSSTTTSS--S-HHHHHHHHHHHHHTHHHHHHHH
T ss_pred cccHHHHHHHHhh-hc-cCcHHHhhccCCcCC--CChHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 11 1111111 1222122 235677899999999999998876
No 81
>PRK07748 sporulation inhibitor KapD; Provisional
Probab=96.15 E-value=0.046 Score=59.66 Aligned_cols=165 Identities=9% Similarity=-0.028 Sum_probs=99.4
Q ss_pred cceEEEEEEEeccCCC-CCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCC--CCcC----C-CCCeEEEEcCCHH
Q psy5921 383 YLTVLAVEIHAISRAL-LKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESE--LPEV----R-TKPIQMHFVSNEK 454 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~-l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~--~p~~----~-~~~~~V~~~~nEk 454 (1200)
+++.+.||+||++..+ ..|....++|+.|++....++...... -..++|... .+.. . ..+..+.--....
T Consensus 3 ~~~~vvlD~EtTg~~~~~~~~~~~~eIIeIGaV~v~~~~i~~~f--~~lV~P~~~~~i~~~~~~ltGIt~~~l~~ap~~~ 80 (207)
T PRK07748 3 EQQFLFLDFEFTMPQHKKKPKGFFPEIIEVGLVSVVGCEVEDTF--SSYVKPKTFPSLTERCKSFLGITQEDVDKGISFE 80 (207)
T ss_pred cceEEEEEeecCCcCCCCCCCCCCCceEEEeEEEEecCcChhhh--cceECCCccCccChhhhhhcCcCHHHHccCCCHH
Confidence 4688999999996432 334434689999998865544311111 223555431 1111 0 1112344456788
Q ss_pred HHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHH
Q psy5921 455 ELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRL 534 (1200)
Q Consensus 455 eLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~ 534 (1200)
+.+..|.+++... +.++++| . +||+.+|.+-++.+|++.. . -+..+|+...
T Consensus 81 evl~~f~~~~~~~-~~~iv~~-~-~fD~~fL~~~~~~~~~~~~-------------------------~-~~~~~dl~~~ 131 (207)
T PRK07748 81 ELVEKLAEYDKRC-KPTIVTW-G-NMDMKVLKHNCEKAGVPFP-------------------------F-KGQCRDLSLE 131 (207)
T ss_pred HHHHHHHHHhCcC-CeEEEEE-C-HHHHHHHHHHHHHcCCCCc-------------------------c-cccceeHHHH
Confidence 9999999998643 2466665 4 6999999998888887532 0 1225777776
Q ss_pred HHhhhc-CCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 535 LRHEVN-LQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 535 ~r~el~-L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+..+. ..+++|++++..+ |-.. . +. .+..+.||..+.+|+.++
T Consensus 132 ~~~~~~~~~~~~L~~~~~~~-gi~~--~-----------~~-------~H~Al~DA~~ta~l~~~l 176 (207)
T PRK07748 132 YKKFFGERNQTGLWKAIEEY-GKEG--T-----------GK-------HHCALDDAMTTYNIFKLV 176 (207)
T ss_pred HHHHhCcCCCCCHHHHHHHc-CCCC--C-----------CC-------CcChHHHHHHHHHHHHHH
Confidence 665543 3568999887753 2211 0 00 112467888888888775
No 82
>PRK11779 sbcB exonuclease I; Provisional
Probab=96.11 E-value=0.036 Score=67.63 Aligned_cols=105 Identities=13% Similarity=0.001 Sum_probs=64.8
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCC---CcCC-CCCe---EEEE-cCCH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESEL---PEVR-TKPI---QMHF-VSNE 453 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~---p~~~-~~~~---~V~~-~~nE 453 (1200)
...+.+.+|+||++ + +|.+|+|+.|++..-+...........+.+++.... |... ..++ .+.- -.+|
T Consensus 4 ~~~~fvv~D~ETTG---L--dP~~DrIIeiAaVrvd~~~~~i~e~~~~~~~P~~~~lp~p~a~~IhGIT~e~l~~~g~~e 78 (476)
T PRK11779 4 MQPTFLWHDYETFG---A--NPALDRPAQFAGIRTDADLNIIGEPLVFYCKPADDYLPSPEAVLITGITPQEALEKGLPE 78 (476)
T ss_pred CCCcEEEEEEECCC---C--CCCCCeeEEEEEEEEeCCCceecceeEEEEcCCcCcCCCHHHHHHhCCCHHHHHhcCCCH
Confidence 45789999999995 5 468999999998754432111001123445554311 1100 0011 1111 1268
Q ss_pred HHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHh
Q psy5921 454 KELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL 492 (1200)
Q Consensus 454 keLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~l 492 (1200)
.+.+..|.+++.. ...+++|||...||+.+|..-+...
T Consensus 79 ~e~~~~i~~~l~~-~~~~lVGhNni~FD~eflr~~~~r~ 116 (476)
T PRK11779 79 AEFAARIHAEFSQ-PGTCILGYNNIRFDDEVTRYIFYRN 116 (476)
T ss_pred HHHHHHHHHHHhc-CCCEEEEeCchhhcHHHHHHHHHhc
Confidence 8999999888863 2368999998899999998877543
No 83
>PRK06722 exonuclease; Provisional
Probab=96.02 E-value=0.12 Score=59.14 Aligned_cols=163 Identities=9% Similarity=0.014 Sum_probs=95.6
Q ss_pred ceEEEEEEEeccCCCCCC--CCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHHHH
Q psy5921 384 LTVLAVEIHAISRALLKP--DPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEKEL 456 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~P--dp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEkeL 456 (1200)
-+.+.||+||+. .| .+..|+|+.|+++.-.++......+.-.+++|....|.. ...+..|.-.+.-.+.
T Consensus 5 ~~~vViD~ETT~----~p~~~~~~deIIEIGAVkV~~g~i~Ivd~F~sLV~P~~~I~~~i~~LTGIT~emV~~AP~f~eV 80 (281)
T PRK06722 5 THFIVFDIERNF----RPYKSEDPSEIVDIGAVKIEASTMKVIGEFSELVKPGARLTRHTTKLTGITKKDLIGVEKFPQI 80 (281)
T ss_pred CEEEEEEeeCCC----CCCCCCCCCeEEEEEEEEEECCceeEEeeEEEEECCCCcCCHhHhhhcCCCHHHHcCCCCHHHH
Confidence 367889999972 23 234589999998765544211111123456665433211 0112234455678899
Q ss_pred HHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHH
Q psy5921 457 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR 536 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r 536 (1200)
+..|.+++.. +.+++||. .||+.+|.+-+..+|++... +.-.-.+|+.+.++
T Consensus 81 l~ef~~fig~---~~lvahna-~FD~~FL~~~l~~~gi~~p~------------------------~~~~~~idl~~la~ 132 (281)
T PRK06722 81 IEKFIQFIGE---DSIFVTWG-KEDYRFLSHDCTLHSVECPC------------------------MEKERRIDLQKFVF 132 (281)
T ss_pred HHHHHHHHCC---CcEEEEEe-HHHHHHHHHHHHHcCCCCCc------------------------ccccchhHHHHHHH
Confidence 9999999953 44555555 79999999988877765320 00011467766655
Q ss_pred hhh---cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 537 HEV---NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 537 ~el---~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
..+ .-.+++|++++.++ |-... +. .+-.+.||..+.+|+.++
T Consensus 133 ~~~~~l~~~~~sL~~l~~~l-gL~~~-------------g~-------~HrAL~DA~~TA~L~l~l 177 (281)
T PRK06722 133 QAYEELFEHTPSLQSAVEQL-GLIWE-------------GK-------QHRALADAENTANILLKA 177 (281)
T ss_pred HHhhhhccCCCCHHHHHHHC-CCCCC-------------CC-------CcCcHHHHHHHHHHHHHH
Confidence 433 12457899998765 22110 00 122367888888888776
No 84
>PRK07247 DNA polymerase III subunit epsilon; Validated
Probab=96.01 E-value=0.08 Score=57.43 Aligned_cols=92 Identities=15% Similarity=0.097 Sum_probs=59.1
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-----CCCeEEEEcCCHHHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-----TKPIQMHFVSNEKELFS 458 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-----~~~~~V~~~~nEkeLL~ 458 (1200)
-+.+.||+||++ +. ..++|+.|+++...++.. ....-..++|....+... .....|.--..-.+.+.
T Consensus 5 ~~~vvlD~EtTG---l~---~~~eIIeIgaV~v~~g~~--~~~f~~lv~P~~~i~~~~~~lhGIt~~~v~~ap~~~evl~ 76 (195)
T PRK07247 5 ETYIAFDLEFNT---VN---GVSHIIQVSAVKYDDHKE--VDSFDSYVYTDVPLQSFINGLTGITADKIADAPKVEEVLA 76 (195)
T ss_pred CeEEEEEeeCCC---CC---CCCeEEEEEEEEEECCEE--EEEEEEEECCCCCCCccceecCCCCHHHHhCCCCHHHHHH
Confidence 367899999985 32 258999999886555421 111223455543322110 01122344567889999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHH
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLL 486 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~ 486 (1200)
.|.+++. ..+++|||...||+.+|.
T Consensus 77 ~f~~f~~---~~~lVaHNa~~fD~~fL~ 101 (195)
T PRK07247 77 AFKEFVG---ELPLIGYNAQKSDLPILA 101 (195)
T ss_pred HHHHHHC---CCeEEEEeCcHhHHHHHH
Confidence 9999985 357999999989999984
No 85
>cd06133 ERI-1_3'hExo_like DEDDh 3'-5' exonuclease domain of Caenorhabditis elegans ERI-1, human 3' exonuclease, and similar proteins. This subfamily is composed of Caenorhabditis elegans ERI-1, human 3' exonuclease (3'hExo), Drosophila exonuclease snipper (snp), and similar proteins from eukaryotes and bacteria. These are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ERI-1 has been implicated in the degradation of small interfering RNAs (RNAi). 3'hExo participates in the degradation of histone mRNAs. Snp is a non-essential exonuclease that efficiently degrades structured RNA and DNA substrates as long as there is a minimum of 2 nucleotides in the 3' overhang to initiate degradation. Snp is not a functional ho
Probab=95.98 E-value=0.11 Score=54.32 Aligned_cols=163 Identities=12% Similarity=0.039 Sum_probs=98.1
Q ss_pred EEEEEEeccCCCCCCC---CCCCcEEEEEEEecCCCCCCCceEEEEEecCCC--CCCcC-----CCCCeEEEEcCCHHHH
Q psy5921 387 LAVEIHAISRALLKPD---PAYDEVKAIFYYLYTCPPEEDRKVGIILIGQES--ELPEV-----RTKPIQMHFVSNEKEL 456 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pd---p~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~--~~p~~-----~~~~~~V~~~~nEkeL 456 (1200)
+.+|+||++. .|. +..++|+.|+++..+.........--..++|.. ..+.. .-..-.+.-.....+.
T Consensus 2 vv~D~Ettg~---~~~~~~~~~~~IieIgav~v~~~~~~~~~~f~~~i~P~~~~~i~~~~~~i~gIt~e~l~~~~~~~~v 78 (176)
T cd06133 2 LVIDFEATCW---EGNSKPDYPNEIIEIGAVLVDVKTKEIIDTFSSYVKPVINPKLSDFCTELTGITQEDVDNAPSFPEV 78 (176)
T ss_pred EEEEeecccc---CCCCCCCCCcceEEEEEEEEEcCCCeEEeeeeeeECCCcCCchhHHHHHhcCcCHHHHhcCCCHHHH
Confidence 6799999953 322 235899999988654432111111123456654 21111 0011123445788999
Q ss_pred HHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHH
Q psy5921 457 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR 536 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r 536 (1200)
+.+|.+++....+.++++|. .||+..|.+.+...+.... .....-.+|+...++
T Consensus 79 l~~~~~~l~~~~~~~~v~~~--~~d~~~l~~~~~~~~~~~~------------------------~~~~~~~~D~~~~~~ 132 (176)
T cd06133 79 LKEFLEWLGKNGKYAFVTWG--DWDLKDLLQNQCKYKIINL------------------------PPFFRQWIDLKKEFA 132 (176)
T ss_pred HHHHHHHHHhCCCeEEEeec--HhhHHHHHHHHHHhcCCCC------------------------cccccceEEHHHHHH
Confidence 99999999875445677775 6999999988877665310 011223688888888
Q ss_pred hhhcC-CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 537 HEVNL-QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 537 ~el~L-~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
..+.. .+++|++++.++ |...+.. .+..+.||..+.+|+.++
T Consensus 133 ~~~~~~~~~~L~~l~~~~-gi~~~~~--------------------~H~Al~DA~~~a~l~~~~ 175 (176)
T cd06133 133 KFYGLKKRTGLSKALEYL-GLEFEGR--------------------HHRGLDDARNIARILKRL 175 (176)
T ss_pred HHhCCCCCCCHHHHHHHC-CCCCCCC--------------------CcCcHHHHHHHHHHHHHh
Confidence 76543 699999998764 3322100 112356888888877664
No 86
>cd06144 REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated Gene product of 20 kDa, and similar proteins. This subfamily is composed of RNA exonuclease 4 (REX4 or Rex4p), XPMC2, Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20), and similar proteins. REX4 is involved in pre-rRNA processing. It controls the ratio between the two forms of 5.8S rRNA in yeast. XPMC2 is a Xenopus gene which was identified through its ability to correct a mitotic defect in fission yeast. The human homolog of XPMC2 (hPMC2) may be involved in angiotensin II-induced adrenal cell cycle progression and cell proliferation. ISG20 is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. These proteins are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clus
Probab=95.70 E-value=0.074 Score=55.15 Aligned_cols=88 Identities=11% Similarity=0.126 Sum_probs=53.7
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC----C-CCCeEEEEcCCHHHHHHHHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV----R-TKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~----~-~~~~~V~~~~nEkeLL~~F~ 461 (1200)
+++|+||++ +.|+-...+|.+|++.... +. ... -..++|....+.. . -....+.-..+..+.+..|.
T Consensus 1 v~lD~EttG---l~~~~~~~~i~~v~~v~~~-~~--~~~--~~~v~P~~~i~~~~~~ihGIt~~~v~~a~~~~~~~~~l~ 72 (152)
T cd06144 1 VALDCEMVG---VGPDGSESALARVSIVNED-GN--VVY--DTYVKPQEPVTDYRTAVSGIRPEHLKDAPDFEEVQKKVA 72 (152)
T ss_pred CEEEEEeec---ccCCCCEEEEEEEEEEeCC-CC--EEE--EEEECCCCCCCcccccCCCCCHHHHcCCCCHHHHHHHHH
Confidence 479999995 4443234667677765432 21 111 2235554332211 0 11123455668889999999
Q ss_pred HHHhhhCCCEEEecCcccccHHHHH
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLL 486 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~ 486 (1200)
+++. ..+++|||+ .||+.+|.
T Consensus 73 ~~l~---~~vlVgHn~-~fD~~~L~ 93 (152)
T cd06144 73 ELLK---GRILVGHAL-KNDLKVLK 93 (152)
T ss_pred HHhC---CCEEEEcCc-HHHHHHhc
Confidence 9984 489999999 59998884
No 87
>cd06137 DEDDh_RNase DEDDh 3'-5' exonuclease domain of the eukaryotic exoribonucleases PAN2, RNA exonuclease (REX)-1,-3, and -4, ISG20, and similar proteins. This group is composed of eukaryotic exoribonucleases that include PAN2, RNA exonuclease 1 (REX1 or Rex1p), REX3 (Rex3p), REX4 (or Rex4p), ISG20, and similar proteins. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. PAN2 is the catalytic subunit of poly(A) nuclease (PAN), a Pab1p-dependent 3'-5' exoribonuclease which plays an important role in the posttranscriptional maturation of pre-mRNAs. REX proteins are required for the processing and maturation of many RNA species, and ISG20 is an interferon-induced antiviral exonuclease with a strong prefere
Probab=95.25 E-value=0.12 Score=54.19 Aligned_cols=123 Identities=13% Similarity=0.076 Sum_probs=73.3
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-C-CC---eEEEEcC-------CHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-T-KP---IQMHFVS-------NEK 454 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-~-~~---~~V~~~~-------nEk 454 (1200)
++||+||++ +. |..|+|+.|++.-..++.. ... ..++|....+... . .+ ..+.-.. .-.
T Consensus 1 v~lD~EttG---l~--~~~d~ii~Ig~V~v~~g~i--~~~--~~v~P~~~i~~~~~~i~GIt~~~l~~a~~~~~~~~~~~ 71 (161)
T cd06137 1 VALDCEMVG---LA--DGDSEVVRISAVDVLTGEV--LID--SLVRPSVRVTDWRTRFSGVTPADLEEAAKAGKTIFGWE 71 (161)
T ss_pred CEEEeeeee---Ec--CCCCEEEEEEEEEcCCCeE--EEe--ccccCCCCCCccceeccCCCHHHHhhhhhcCCccccHH
Confidence 378999994 54 4689999999876544321 011 1344433221110 0 00 0010000 113
Q ss_pred HHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHH
Q psy5921 455 ELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRL 534 (1200)
Q Consensus 455 eLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~ 534 (1200)
+.+..|.+++... .||+|||.. ||+.+|..- ..-++|+.++
T Consensus 72 ~~~~~~~~~i~~~--~vlVgHn~~-fD~~fL~~~------------------------------------~~~~iDT~~l 112 (161)
T cd06137 72 AARAALWKFIDPD--TILVGHSLQ-NDLDALRMI------------------------------------HTRVVDTAIL 112 (161)
T ss_pred HHHHHHHHhcCCC--cEEEeccHH-HHHHHHhCc------------------------------------CCCeeEehhh
Confidence 6777788877421 699999995 999998410 0115788888
Q ss_pred HHhhhc-C---CCCCHHHHHHHHcCCC
Q psy5921 535 LRHEVN-L---QSYTFENIMYHVLHER 557 (1200)
Q Consensus 535 ~r~el~-L---~SYsLe~Va~~vLg~r 557 (1200)
++.... + .+|+|+++|..++|..
T Consensus 113 ~~~~~~~~~~~~~~~L~~L~~~~~~~~ 139 (161)
T cd06137 113 TREAVKGPLAKRQWSLRTLCRDFLGLK 139 (161)
T ss_pred hhhccCCCcCCCCccHHHHHHHHCCch
Confidence 876543 3 6899999999988754
No 88
>COG0847 DnaQ DNA polymerase III, epsilon subunit and related 3'-5' exonucleases [DNA replication, recombination, and repair]
Probab=95.19 E-value=0.11 Score=57.84 Aligned_cols=135 Identities=16% Similarity=0.257 Sum_probs=91.1
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC--CCCeEEEEcCCH---HHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR--TKPIQMHFVSNE---KELFS 458 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~--~~~~~V~~~~nE---keLL~ 458 (1200)
.+...||+||++ . +|.+|.|+.|+.....+...... ..-.+++|...+|... -.+..-....+. .+.+.
T Consensus 13 ~~~vv~D~ETtg---~--~~~~~~iieIgav~~~~~~i~~~-~~~~~v~P~~~i~~~~~~i~git~e~l~~~p~~~~v~~ 86 (243)
T COG0847 13 TRFVVIDLETTG---L--NPKKDRIIEIGAVTLEDGRIVER-SFHTLVNPERPIPPEIFKIHGITDEMLADAPKFAEVLP 86 (243)
T ss_pred CcEEEEecccCC---C--CCCCCceEEEEeEEEECCeeecc-eeEEEECCCCCCChhhhhhcCCCHHHHhcCCCHHHHHH
Confidence 688999999995 3 34889999999887665432111 1124566633322211 011111222333 78888
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhh
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE 538 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~e 538 (1200)
.|.+++... .++++|| ..||+++|..++..++.+.. +-.++|.....|..
T Consensus 87 ~~~~~i~~~--~~~Vahn-a~fD~~fl~~~~~~~~~~~~---------------------------~~~~~~t~~~~r~~ 136 (243)
T COG0847 87 EFLDFIGGL--RLLVAHN-AAFDVGFLRVESERLGIEIP---------------------------GDPVLDTLALARRH 136 (243)
T ss_pred HHHHHHCCC--CeEEEEc-hhhcHHHHHHHHHHcCCCcc---------------------------cCceehHHHHHHHH
Confidence 888888654 9999999 67999999999998876531 44577888888877
Q ss_pred hc-CCCCCHHHHHHHHcC
Q psy5921 539 VN-LQSYTFENIMYHVLH 555 (1200)
Q Consensus 539 l~-L~SYsLe~Va~~vLg 555 (1200)
+. ...++|+.++. .+|
T Consensus 137 ~~~~~~~~L~~l~~-~~g 153 (243)
T COG0847 137 FPGFDRSSLDALAE-RLG 153 (243)
T ss_pred cCCCccchHHHHHH-HcC
Confidence 64 58999999988 344
No 89
>COG2176 PolC DNA polymerase III, alpha subunit (gram-positive type) [DNA replication, recombination, and repair]
Probab=95.17 E-value=0.033 Score=71.94 Aligned_cols=132 Identities=18% Similarity=0.198 Sum_probs=92.8
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCC-CCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPP-EEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEKEL 456 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~-~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEkeL 456 (1200)
.-|-.-|||||++ + +|..|+|+-|+.+...++. .|.+ -+.++|....|.. ...+-.+.-.....+.
T Consensus 420 datyVVfDiETTG---L--s~~~d~iIE~aAvKikng~iId~f---~~Fi~P~~pl~~~~telTgITdeml~~a~~i~~v 491 (1444)
T COG2176 420 DATYVVFDIETTG---L--SPVYDEIIEIAAVKIKNGRIIDKF---QFFIKPGRPLSATITELTGITDEMLENAPEIEEV 491 (1444)
T ss_pred cccEEEEEeecCC---c--CcccchhhhheeeeeeCCcchHHH---HHhcCCCCcCchhhhhccccCHHHHcCCccHHHH
Confidence 4577899999995 5 4688999999887655553 2211 1123333222111 0011223444577888
Q ss_pred HHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHH
Q psy5921 457 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR 536 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r 536 (1200)
|..|.+++ +=+|+|.|| -+||++||..+.+.+++..+ -.-++|+..+.|
T Consensus 492 L~kf~~~~---~d~IlVAHN-asFD~gFl~~~~~k~~~~~~---------------------------~~pvIDTL~lar 540 (1444)
T COG2176 492 LEKFREFI---GDSILVAHN-ASFDMGFLNTNYEKYGLEPL---------------------------TNPVIDTLELAR 540 (1444)
T ss_pred HHHHHHHh---cCcEEEecc-CccchhHHHHHHHHhCCccc---------------------------cCchhhHHHHHH
Confidence 99888888 447999999 78999999999999888654 123889999999
Q ss_pred hhh-cCCCCCHHHHHHHH
Q psy5921 537 HEV-NLQSYTFENIMYHV 553 (1200)
Q Consensus 537 ~el-~L~SYsLe~Va~~v 553 (1200)
..+ .+.||+|.++|..+
T Consensus 541 ~L~P~~ksh~Lg~l~kk~ 558 (1444)
T COG2176 541 ALNPEFKSHRLGTLCKKL 558 (1444)
T ss_pred HhChhhhhcchHHHHHHh
Confidence 877 68999999999876
No 90
>PRK05359 oligoribonuclease; Provisional
Probab=94.99 E-value=0.1 Score=55.87 Aligned_cols=104 Identities=19% Similarity=0.143 Sum_probs=65.0
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCC----Cc-C---C----CCCeEEEEcCC
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESEL----PE-V---R----TKPIQMHFVSN 452 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~----p~-~---~----~~~~~V~~~~n 452 (1200)
+.+.+|+||++ + ||.+|+|+.|++...++..........+++++.... +. . . -.+..+..-.+
T Consensus 4 ~~vvlD~ETTG---L--dp~~d~IieIgaV~~~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~ih~~tGIt~~~l~~~~~ 78 (181)
T PRK05359 4 NLIWIDLEMTG---L--DPERDRIIEIATIVTDADLNILAEGPVIAIHQSDEALAAMDEWNTRTHTRSGLIDRVRASTVS 78 (181)
T ss_pred cEEEEEeecCC---C--CCCCCeEEEEEEEEEcCCceEcccceEEEECCCHHHhhccChHHHHhcccccCcHHHHhcCCC
Confidence 57899999995 5 467899999999875442110001123345543211 00 0 0 00111223357
Q ss_pred HHHHHHHHHHHHhhhC---CCEEEecCcccccHHHHHHHHHHhCC
Q psy5921 453 EKELFSIFIENVRQWD---PDILIGYEIETLSWGYLLERGYVLGL 494 (1200)
Q Consensus 453 EkeLL~~F~~~I~~~D---PDIIvGyNi~~FDlpYL~~Ra~~lgi 494 (1200)
+.+.+..|++++..+- -.+|+|||+ .||+.||.+-+..++.
T Consensus 79 ~~e~~~~~l~fl~~~~~~~~~~l~g~~v-~FD~~FL~~~~~~~~~ 122 (181)
T PRK05359 79 EAEAEAQTLEFLKQWVPAGKSPLCGNSI-GQDRRFLARYMPELEA 122 (181)
T ss_pred HHHHHHHHHHHHHHhcCCCCCceeecch-hhCHHHHHHHHHHhcc
Confidence 8899999999997642 246889887 6999999998876554
No 91
>cd06149 ISG20 DEDDh 3'-5' exonuclease domain of Interferon Stimulated Gene product of 20 kDa, and similar proteins. Interferon (IFN) Stimulated Gene product of 20 kDa (ISG20) is an IFN-induced antiviral exonuclease with a strong preference for single-stranded RNA and minor activity towards single-stranded DNA. It was also independently identified by its response to estrogen and was called HEM45 (human estrogen regulated transcript). ISG20 is a DEDDh-type DnaQ-like 3'-5' exonuclease containing three conserved sequence motifs termed ExoI, ExoII and ExoIII with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. ISG20 may be a major effector of innate immunity against pathogens including viruses, bacteria, and parasites. It is located in promyelocytic leukemia (PML) nuclear bodies, sites for oncogenic DNA viral transcription and repli
Probab=94.70 E-value=0.18 Score=52.69 Aligned_cols=88 Identities=11% Similarity=0.082 Sum_probs=56.1
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-----CCCeEEEEcCCHHHHHHHHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-----TKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-----~~~~~V~~~~nEkeLL~~F~ 461 (1200)
++||+||++ +.|....++|..|++.-.+ +. .. .-..++|....+... -.+..+.-..+-.+.+.+|.
T Consensus 1 v~~D~EttG---l~~~~~~~~i~~i~~v~~~-g~--~~--~~~lv~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v~~~l~ 72 (157)
T cd06149 1 VAIDCEMVG---TGPGGRESELARCSIVNYH-GD--VL--YDKYIRPEGPVTDYRTRWSGIRRQHLVNATPFAVAQKEIL 72 (157)
T ss_pred CEEEeEecc---ccCCCCeEEEEEEEEEeCC-CC--EE--EEEeECCCCccCccceECCCCCHHHHhcCCCHHHHHHHHH
Confidence 479999995 5554446899998876542 21 11 123456654332110 01123344567789999999
Q ss_pred HHHhhhCCCEEEecCcccccHHHHH
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLL 486 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~ 486 (1200)
+++. -.|++|||. .||+.+|-
T Consensus 73 ~~l~---~~vlV~Hn~-~~D~~~l~ 93 (157)
T cd06149 73 KILK---GKVVVGHAI-HNDFKALK 93 (157)
T ss_pred HHcC---CCEEEEeCc-HHHHHHhc
Confidence 9985 379999997 59998875
No 92
>PRK09182 DNA polymerase III subunit epsilon; Validated
Probab=94.60 E-value=0.1 Score=60.17 Aligned_cols=99 Identities=12% Similarity=0.044 Sum_probs=53.3
Q ss_pred CCcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecC---CCCC-CCceEEEEEecCCCCCCcCC--CCCe---EEEEcC
Q psy5921 381 NYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT---CPPE-EDRKVGIILIGQESELPEVR--TKPI---QMHFVS 451 (1200)
Q Consensus 381 ~p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~---d~~~-d~~~~gv~~v~~~~~~p~~~--~~~~---~V~~~~ 451 (1200)
.++.+++.||+||++ + +|.+|+|+.|++.... ++.. ......-.+++|...+|... ..++ .+.--.
T Consensus 34 ~~~~~~vvlD~ETTG---L--d~~~d~IIEIg~V~v~~~~~g~i~~v~~~~~~lv~P~~~I~~~~t~IhGIt~e~v~~~~ 108 (294)
T PRK09182 34 EFVRLGVILDTETTG---L--DPRKDEIIEIGMVAFEYDDDGRIGDVLDTFGGLQQPSRPIPPEITRLTGITDEMVAGQT 108 (294)
T ss_pred CCCCeEEEEEeeCCC---C--CCCCCeEEEEEEEEEEecCCCceeeeeeEEEEEeCCCCCCCHHHHHhcCCCHHHHhcCC
Confidence 455789999999995 4 4678999999987543 2211 00011123455543332210 0000 000001
Q ss_pred CHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHH
Q psy5921 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGY 490 (1200)
Q Consensus 452 nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~ 490 (1200)
... ..|.+++.. -++|||||. .||+++|...+.
T Consensus 109 ~~~---~~l~~fl~~--~~vlVAHNA-~FD~~fL~~~~~ 141 (294)
T PRK09182 109 IDP---AAVDALIAP--ADLIIAHNA-GFDRPFLERFSP 141 (294)
T ss_pred CcH---HHHHHHhcC--CCEEEEeCH-HHHHHHHHHHHH
Confidence 111 233344433 379999998 699999976543
No 93
>cd06145 REX1_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 1, -3 and similar eukaryotic proteins. This subfamily is composed of RNA exonuclease 1 (REX1 or Rex1p), REX3 (or Rex3p), and similar eukaryotic proteins. In yeast, REX1 and REX3 are required for 5S rRNA and MRP (mitochondrial RNA processing) RNA maturation, respectively. They are DEDDh-type DnaQ-like 3'-5' exonucleases containing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. REX1 is the major exonuclease responsible for pre-tRNA trail trimming and may also be involved in nuclear CCA turnover. REX proteins function in the processing and maturation of many RNA species, similar to the function of Escherichia coli RNase T.
Probab=94.57 E-value=0.23 Score=51.51 Aligned_cols=121 Identities=14% Similarity=0.067 Sum_probs=76.9
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-C----CCCeEEEEc-CCHHHHHHHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-R----TKPIQMHFV-SNEKELFSIF 460 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-~----~~~~~V~~~-~nEkeLL~~F 460 (1200)
+++|+|+++-+ +. ++|..|+..-. ++. .. --..++|....+.. . -.+..+.-- ..+.+.+..|
T Consensus 1 ~~iD~E~~g~~-----~g-~ei~~i~~v~~-~~~--~~--f~~lv~P~~~i~~~~t~itGIt~~~l~~a~~~~~~v~~~~ 69 (150)
T cd06145 1 FALDCEMCYTT-----DG-LELTRVTVVDE-NGK--VV--LDELVKPDGEIVDYNTRFSGITEEMLENVTTTLEDVQKKL 69 (150)
T ss_pred CEEeeeeeeec-----CC-CEEEEEEEEeC-CCC--EE--EEEeECCCCccchhccCcCCCCHHHhccCCCCHHHHHHHH
Confidence 47899999633 12 99999997633 221 11 12345654333211 0 111234444 3899999999
Q ss_pred HHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh-
Q psy5921 461 IENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV- 539 (1200)
Q Consensus 461 ~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el- 539 (1200)
.+++.. =.+|+|||.. ||+.+|.. . ..+ ++|+..++|...
T Consensus 70 ~~fl~~--~~vlVgHn~~-fD~~fL~~---------~--------------------------~~~-~iDT~~l~r~~~~ 110 (150)
T cd06145 70 LSLISP--DTILVGHSLE-NDLKALKL---------I--------------------------HPR-VIDTAILFPHPRG 110 (150)
T ss_pred HHHhCC--CCEEEEcChH-HHHHHhhc---------c--------------------------CCC-EEEcHHhccccCC
Confidence 999952 1599999995 99999731 0 011 578888877643
Q ss_pred cCCCCCHHHHHHHHcCCC
Q psy5921 540 NLQSYTFENIMYHVLHER 557 (1200)
Q Consensus 540 ~L~SYsLe~Va~~vLg~r 557 (1200)
...+|+|+++|+.+++..
T Consensus 111 ~~~~~~L~~L~~~~~~~~ 128 (150)
T cd06145 111 PPYKPSLKNLAKKYLGRD 128 (150)
T ss_pred CCCChhHHHHHHHHCCcc
Confidence 356899999999998743
No 94
>cd06146 mut-7_like_exo DEDDy 3'-5' exonuclease domain of Caenorhabditis elegans mut-7 and similar proteins. The mut-7 subfamily is composed of Caenorhabditis elegans mut-7 and similar proteins found in plants and metazoans. Mut-7 is implicated in posttranscriptional gene silencing. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs, termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis.
Probab=94.43 E-value=0.53 Score=50.91 Aligned_cols=160 Identities=11% Similarity=0.089 Sum_probs=92.3
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~ 461 (1200)
..-.+++||+|..+. +......+|..|-++..+. +++++..... ..+.+.+..|+
T Consensus 20 ~~~~vig~D~Ew~~~---~~~~~~~~v~LiQiat~~~---------~~lid~~~~~-------------~~~~~~~~~~L 74 (193)
T cd06146 20 EAGRVVGIDSEWKPS---FLGDSDPRVAILQLATEDE---------VFLLDLLALE-------------NLESEDWDRLL 74 (193)
T ss_pred ccCCEEEEECccCCC---ccCCCCCCceEEEEecCCC---------EEEEEchhcc-------------ccchHHHHHHH
Confidence 445789999998852 2222345555555544221 4444321100 01233344443
Q ss_pred HHHhhhCCCEE-EecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh-
Q psy5921 462 ENVRQWDPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV- 539 (1200)
Q Consensus 462 ~~I~~~DPDII-vGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el- 539 (1200)
.-+- .||+|+ +||++. +|+..|.+. +|+.. +.. ..-+-++|+...++...
T Consensus 75 ~~ll-~d~~i~KVg~~~~-~D~~~L~~~---~~~~~-----~~~------------------~~~~~v~Dl~~~a~~l~~ 126 (193)
T cd06146 75 KRLF-EDPDVLKLGFGFK-QDLKALSAS---YPALK-----CMF------------------ERVQNVLDLQNLAKELQK 126 (193)
T ss_pred HHHh-CCCCeeEEEechH-HHHHHHHHh---cCccc-----ccc------------------ccCCceEEHHHHHHHHhh
Confidence 3332 278976 999996 699888643 33211 000 00123678876655322
Q ss_pred ----------cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 540 ----------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 540 ----------~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+-..++|.+++..+||...+.. ...+.|-... -...-+.|+..||...+.|.++|
T Consensus 127 ~~~~~~~~~~~~~~~sL~~l~~~~lg~~l~K~--~q~SdW~~rp---Ls~~Qi~YAA~Da~~l~~l~~~L 191 (193)
T cd06146 127 SDMGRLKGNLPSKTKGLADLVQEVLGKPLDKS--EQCSNWERRP---LREEQILYAALDAYCLLEVFDKL 191 (193)
T ss_pred ccccccccccCcccCCHHHHHHHHhCCCcCcc--cccCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 1367899999999999765432 3445553322 13456899999999999999886
No 95
>cd06135 Orn DEDDh 3'-5' exonuclease domain of oligoribonuclease and similar proteins. Oligoribonuclease (Orn) is a DEDDh-type DnaQ-like 3'-5' exoribonuclease that is responsible for degrading small oligoribonucleotides to mononucleotides. It contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific Hx(4)D conserved pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Orn is essential for Escherichia coli survival. The human homolog, also called Sfn (small fragment nuclease), is able to hydrolyze short single-stranded RNA and DNA oligomers. It plays a role in cellular nucleotide recycling.
Probab=94.41 E-value=0.1 Score=55.39 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=63.9
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC--------C-CCC---eEEEEcCCHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV--------R-TKP---IQMHFVSNEK 454 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~--------~-~~~---~~V~~~~nEk 454 (1200)
+.+|+||++ +. |.+|+|+.|++...+..........-.++++....+.. . ..+ ..+.-...+.
T Consensus 2 v~iD~ETTG---l~--p~~d~IieIgaV~~~~~~~~i~~~f~~~i~p~~~~~~~~~~~~~~ih~~tgIt~~~l~~~~~~~ 76 (173)
T cd06135 2 VWIDLEMTG---LD--PEKDRILEIACIITDGDLNIIAEGPELVIHQPDEVLDGMDEWCTEMHTKSGLTERVRASTVTLA 76 (173)
T ss_pred EEEEEecCC---CC--CCCCeeEEEEEEEEeCCCceecCceeEEECCCHHHhhhccHHHHHcccccccHHHHHhCCCCHH
Confidence 679999995 53 57899999999876543211111122345554321100 0 001 1233456788
Q ss_pred HHHHHHHHHHhhh---CCCEEEecCcccccHHHHHHHHHHhC
Q psy5921 455 ELFSIFIENVRQW---DPDILIGYEIETLSWGYLLERGYVLG 493 (1200)
Q Consensus 455 eLL~~F~~~I~~~---DPDIIvGyNi~~FDlpYL~~Ra~~lg 493 (1200)
+.+..|.+++... +-.+++|||. .||+.+|.+-+..++
T Consensus 77 ~vl~~~~~f~~~~~~~~~~~lvgh~~-~FD~~fL~~~~~~~~ 117 (173)
T cd06135 77 QAEAELLEFIKKYVPKGKSPLAGNSV-HQDRRFLDKYMPELE 117 (173)
T ss_pred HHHHHHHHHHHHhcCCCCCceeecch-hhCHHHHHHHHHHHh
Confidence 9999999999863 4457888886 699999988776665
No 96
>PRK00448 polC DNA polymerase III PolC; Validated
Probab=94.10 E-value=0.34 Score=66.29 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=88.4
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHHHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEKELFS 458 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEkeLL~ 458 (1200)
-+.+.+|+||++ + +|..++|+.|+++...++.. ....-..++|....|.. ......+.-..+..+.|.
T Consensus 419 ~~~VVfDLETTG---L--~~~~deIIEIgAV~V~~G~i--ie~F~~~V~P~~~I~~~~~~LTGIT~e~L~~aps~~EaL~ 491 (1437)
T PRK00448 419 ATYVVFDVETTG---L--SAVYDEIIEIGAVKIKNGEI--IDKFEFFIKPGHPLSAFTTELTGITDDMVKDAPSIEEVLP 491 (1437)
T ss_pred CcEEEEEhhhcC---C--CCchhhhheeeeEEEeCCeE--eeeEEEEECCCCCCCHHHHHHhCCCHHHHcCCCCHHHHHH
Confidence 468999999994 3 46789999998876554421 11112345554332211 001112334457888999
Q ss_pred HHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhh
Q psy5921 459 IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE 538 (1200)
Q Consensus 459 ~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~e 538 (1200)
.|.+++. -.++++||. .||+++|.+.++.+|++.+. ...+|+...++..
T Consensus 492 ~f~~fig---g~vLVAHNa-~FD~~fL~~~l~rlgl~~l~---------------------------~~~IDTLelar~l 540 (1437)
T PRK00448 492 KFKEFCG---DSILVAHNA-SFDVGFINTNYEKLGLEKIK---------------------------NPVIDTLELSRFL 540 (1437)
T ss_pred HHHHHhC---CCEEEEeCc-cccHHHHHHHHHHcCCcccc---------------------------ccceeHHHHHHHH
Confidence 9988874 479999999 79999999999988875430 1146777777665
Q ss_pred h-cCCCCCHHHHHHHH
Q psy5921 539 V-NLQSYTFENIMYHV 553 (1200)
Q Consensus 539 l-~L~SYsLe~Va~~v 553 (1200)
. ...+++|+++|.++
T Consensus 541 ~p~~k~~kL~~LAk~l 556 (1437)
T PRK00448 541 YPELKSHRLNTLAKKF 556 (1437)
T ss_pred cCccccccHHHHHHHc
Confidence 5 57899999999874
No 97
>cd06141 WRN_exo DEDDy 3'-5' exonuclease domain of WRN and similar proteins. WRN is a unique RecQ DNA helicase exhibiting an exonuclease activity. It contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. Mutations in the WRN gene cause Werner syndrome, an autosomal recessive disorder associated with premature aging and increased susceptibility to cancer and type II diabetes. WRN interacts with key proteins involved in DNA replication, recombination, and repair. It is believed to maintain genomic stability and life span by participating in DNA processes. WRN is stimulated by Ku70/80, an important regulator of genomic stability.
Probab=91.94 E-value=1.9 Score=45.18 Aligned_cols=150 Identities=14% Similarity=0.108 Sum_probs=86.9
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIE 462 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~ 462 (1200)
.-.++.||+|..+. ++.....++..|.++..+. +++++.. ....+...|..
T Consensus 17 ~~~~ig~D~E~~~~---~~~~~~~~~~liQl~~~~~---------~~l~~~~-----------------~~~~~~~~l~~ 67 (170)
T cd06141 17 KEKVVGFDTEWRPS---FRKGKRNKVALLQLATESR---------CLLFQLA-----------------HMDKLPPSLKQ 67 (170)
T ss_pred CCCEEEEeCccCCc---cCCCCCCCceEEEEecCCc---------EEEEEhh-----------------hhhcccHHHHH
Confidence 34679999998852 2222345566565553221 3344321 11233344445
Q ss_pred HHhhhCCCEE-EecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcC
Q psy5921 463 NVRQWDPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNL 541 (1200)
Q Consensus 463 ~I~~~DPDII-vGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L 541 (1200)
++. ||+|+ +||++ ..|+..|.+ .+|+. +.| ++|+.......-..
T Consensus 68 ll~--~~~i~kv~~~~-k~D~~~L~~---~~g~~---------------------------~~~--~~Dl~~aa~ll~~~ 112 (170)
T cd06141 68 LLE--DPSILKVGVGI-KGDARKLAR---DFGIE---------------------------VRG--VVDLSHLAKRVGPR 112 (170)
T ss_pred Hhc--CCCeeEEEeee-HHHHHHHHh---HcCCC---------------------------CCC--eeeHHHHHHHhCCC
Confidence 554 57764 89998 477776633 23432 112 37887655433222
Q ss_pred -CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 542 -QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 542 -~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+.+|.+++..+||...........+.|.... -...-++|+..||...+.|..+|
T Consensus 113 ~~~~~l~~l~~~~l~~~~~k~k~~~~s~W~~rp---Lt~~qi~YAa~Da~~~~~l~~~l 168 (170)
T cd06141 113 RKLVSLARLVEEVLGLPLSKPKKVRCSNWEARP---LSKEQILYAATDAYASLELYRKL 168 (170)
T ss_pred cCCccHHHHHHHHcCcccCCCCCcccCCCCCCC---CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34799999999998755422223344553322 12456799999999999998876
No 98
>cd06139 DNA_polA_I_Ecoli_like_exo DEDDy 3'-5' exonuclease domain of Escherichia coli DNA polymerase I and similar bacterial family-A DNA polymerases. Escherichia coli-like Polymerase I (Pol I), a subgroup of family-A DNA polymerases, contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain in the same polypeptide chain as the polymerase domain. The exonuclease domain contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The 3'-5' exonuclease domain of DNA polymerases has a fundamental role in reducing polymerase errors and is involved in proofreading activity. E. coli DNA Pol I is involved in genome replication but is not the main replicating enzyme. It is also implicated in DNA repair.
Probab=89.60 E-value=9.8 Score=40.20 Aligned_cols=152 Identities=15% Similarity=0.139 Sum_probs=88.0
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEE-ecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIIL-IGQESELPEVRTKPIQMHFVSNEKELFSIFIEN 463 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~-v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~ 463 (1200)
..+++|+|+.+ . +|..+.|+.++++...+ . .+.+ +.... ...-.+..+.+..|.++
T Consensus 6 ~~~a~d~e~~~---~--~~~~~~i~~l~~~~~~~-~------~~~~~~~~~~-----------~~~~~~~~~~~~~l~~~ 62 (193)
T cd06139 6 KVFAFDTETTS---L--DPMQAELVGISFAVEPG-E------AYYIPLGHDY-----------GGEQLPREEVLAALKPL 62 (193)
T ss_pred CeEEEEeecCC---C--CcCCCeEEEEEEEcCCC-C------EEEEecCCCc-----------cccCCCHHHHHHHHHHH
Confidence 45788998763 2 34567898888764321 1 1211 11100 00012566777778888
Q ss_pred HhhhCCC-EEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcCC
Q psy5921 464 VRQWDPD-ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQ 542 (1200)
Q Consensus 464 I~~~DPD-IIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~ 542 (1200)
+.. .+ .++|||. .||+.+|.+ +|+.. .|+ ++|+....+-.-.-.
T Consensus 63 l~~--~~~~~v~hn~-k~d~~~l~~----~gi~~---------------------------~~~-~~Dt~l~a~ll~p~~ 107 (193)
T cd06139 63 LED--PSIKKVGQNL-KFDLHVLAN----HGIEL---------------------------RGP-AFDTMLASYLLNPGR 107 (193)
T ss_pred HhC--CCCcEEeecc-HHHHHHHHH----CCCCC---------------------------CCC-cccHHHHHHHhCCCC
Confidence 764 34 5789999 699998842 34331 122 467765554322222
Q ss_pred -CCCHHHHHHHHcCCCcCCCChHhHHHHHhcC------CcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 543 -SYTFENIMYHVLHERIPLHSWKLLTCWWEHR------THLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 543 -SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~------~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+++|++++..+++..... ...+ +..+ ..........|+..|+..+.+|+.++
T Consensus 108 ~~~~l~~l~~~~l~~~~~~--~~~~---~~k~~~~~~~~~~~~~~~~~ya~~d~~~~~~l~~~l 166 (193)
T cd06139 108 RRHGLDDLAERYLGHKTIS--FEDL---VGKGKKQITFDQVPLEKAAEYAAEDADITLRLYELL 166 (193)
T ss_pred CCCCHHHHHHHHhCCCCcc--HHHH---cCCCcCcCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999998765221 1111 1110 00113456778999999999998876
No 99
>cd06129 RNaseD_like DEDDy 3'-5' exonuclease domain of RNase D, WRN, and similar proteins. The RNase D-like group is composed of RNase D, WRN, and similar proteins. They contain a DEDDy-type, DnaQ-like, 3'-5' exonuclease domain that contains three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. These motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. RNase D is involved in the 3'-end processing of tRNA precursors. RNase D-like proteins in eukaryotes include yeast Rrp6p, human PM/Scl-100 and Drosophila melanogaster egalitarian (Egl) protein. WRN is a unique DNA helicase possessing exonuclease activity. Mutation in the WRN gene is implicated in Werner syndrome, a disease associated with premature aging and increased predisposition to cancer. Yeast Rrp6p and the human Polymyositis/scleroderma autoantigen 100kDa (PM/Scl-100) are exosome-
Probab=87.73 E-value=5.1 Score=41.86 Aligned_cols=145 Identities=16% Similarity=0.065 Sum_probs=84.4
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIEN 463 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~ 463 (1200)
-.++.||+|..... . ...+|..|-++..++ .+++++.... .. ....|..+
T Consensus 13 ~~~ig~D~E~~~~~---~--~~~~~~liQl~~~~~--------~~~l~d~~~~--------------~~---~~~~L~~l 62 (161)
T cd06129 13 GDVIAFDMEWPPGR---R--YYGEVALIQLCVSEE--------KCYLFDPLSL--------------SV---DWQGLKML 62 (161)
T ss_pred CCEEEEECCccCCC---C--CCCceEEEEEEECCC--------CEEEEecccC--------------cc---CHHHHHHH
Confidence 35799999998532 1 124566665555312 1444443210 00 23334344
Q ss_pred HhhhCCCEE-EecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhc-C
Q psy5921 464 VRQWDPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVN-L 541 (1200)
Q Consensus 464 I~~~DPDII-vGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~-L 541 (1200)
+. ||+|+ +||++. .|+..|.+ .+|+.. .| ++|+..... .+. .
T Consensus 63 L~--d~~i~Kvg~~~k-~D~~~L~~---~~gi~~---------------------------~~--~~D~~~aa~-ll~~~ 106 (161)
T cd06129 63 LE--NPSIVKALHGIE-GDLWKLLR---DFGEKL---------------------------QR--LFDTTIAAN-LKGLP 106 (161)
T ss_pred hC--CCCEEEEEeccH-HHHHHHHH---HcCCCc---------------------------cc--HhHHHHHHH-HhCCC
Confidence 43 78875 899985 57666532 244431 12 267765444 222 2
Q ss_pred CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 542 QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 542 ~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+++|..++.++||...+. ....+.|-. .+ -...-+.|+..||...+.|..+|
T Consensus 107 ~~~~L~~l~~~~lg~~l~K--~~~~s~W~~-rp--Lt~~qi~YAa~Da~~l~~l~~~l 159 (161)
T cd06129 107 ERWSLASLVEHFLGKTLDK--SISCADWSY-RP--LTEDQKLYAAADVYALLIIYTKL 159 (161)
T ss_pred CCchHHHHHHHHhCCCCCc--cceeccCCC-CC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 4679999999999876532 233445433 21 13567899999999999998876
No 100
>PTZ00315 2'-phosphotransferase; Provisional
Probab=87.58 E-value=8 Score=48.46 Aligned_cols=108 Identities=6% Similarity=-0.091 Sum_probs=66.6
Q ss_pred cCCcceEEEEEEEeccCCCCCCC-CCCCcEEEEEEEecCCCCCCCceEEEEEecCCCC--CCcC---C--CCCeEEEEcC
Q psy5921 380 ENYYLTVLAVEIHAISRALLKPD-PAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESE--LPEV---R--TKPIQMHFVS 451 (1200)
Q Consensus 380 ~~p~LtvlSlDIeT~t~~~l~Pd-p~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~--~p~~---~--~~~~~V~~~~ 451 (1200)
..+.-+.+.||+||+.. .|. ...|||+-|+++..+..........-..|+|... .+.- . .....|.-..
T Consensus 52 ~q~~d~~IV~DlETTgl---~~~~~~~dEIIEIGaV~Vd~~ng~Ii~~F~~yVkP~~~p~Ls~fct~LTGITqe~V~~Ap 128 (582)
T PTZ00315 52 PQPFDAYVVLDFEATCE---ADRRIEDAEVIEFPMVLVDARTATPVAEFQRYVRPVKNPVLSRFCTELTGITQSMVSRAD 128 (582)
T ss_pred cCCCCeEEEEEEecCCC---CCCCCCCCceEEEEEEEEEccCCEEEEEEEEEECCCCCCCCChhHhhhcCcCHHHHhcCC
Confidence 34557889999999863 332 2468999999987642111111222346777532 1111 0 1123344556
Q ss_pred CHHHHHHHHHHHHhhhCC-------CEEEecCcccccHH-HHHHHHHH
Q psy5921 452 NEKELFSIFIENVRQWDP-------DILIGYEIETLSWG-YLLERGYV 491 (1200)
Q Consensus 452 nEkeLL~~F~~~I~~~DP-------DIIvGyNi~~FDlp-YL~~Ra~~ 491 (1200)
.-.+.+..|.+++..... .+++++|+ .||+. +|..-++.
T Consensus 129 ~F~eVl~ef~~fL~~~~~~e~~~~~~~~vah~g-~fDl~~fL~~e~~~ 175 (582)
T PTZ00315 129 PFPVVYCEALQFLAEAGLGDAPPLRSYCVVTCG-DWDLKTMLPSQMRV 175 (582)
T ss_pred CHHHHHHHHHHHHhccccccccccCceEEEecc-HHHHHHHHHHHHHH
Confidence 778999999999987641 37889998 59985 66665553
No 101
>PRK05755 DNA polymerase I; Provisional
Probab=86.96 E-value=6.9 Score=51.99 Aligned_cols=148 Identities=15% Similarity=0.133 Sum_probs=89.7
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIE 462 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~ 462 (1200)
.-.++++|+||.+ + +|..+.|+.|++++.+. . ++.+.. . . + . .+.+..|..
T Consensus 314 ~~~~~a~DtEt~~---l--~~~~~~i~~i~ls~~~g-~-------~~~ip~-~--------~--i----~-~~~l~~l~~ 364 (880)
T PRK05755 314 AAGLFAFDTETTS---L--DPMQAELVGLSFAVEPG-E-------AAYIPL-D--------Q--L----D-REVLAALKP 364 (880)
T ss_pred ccCeEEEEeccCC---C--CcccccEEEEEEEeCCC-c-------EEEEec-c--------c--c----c-HHHHHHHHH
Confidence 3567999999984 2 35678899998865432 1 222211 0 0 0 1 156777777
Q ss_pred HHhhhCCCE-EEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcC
Q psy5921 463 NVRQWDPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNL 541 (1200)
Q Consensus 463 ~I~~~DPDI-IvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L 541 (1200)
++. |+++ ++|||. .||+.+|.+ +|+.. .|+ ++|+.....-...-
T Consensus 365 ~L~--d~~v~kV~HNa-kfDl~~L~~----~gi~~---------------------------~~~-~~DT~iAa~Ll~~~ 409 (880)
T PRK05755 365 LLE--DPAIKKVGQNL-KYDLHVLAR----YGIEL---------------------------RGI-AFDTMLASYLLDPG 409 (880)
T ss_pred HHh--CCCCcEEEecc-HhHHHHHHh----CCCCc---------------------------CCC-cccHHHHHHHcCCC
Confidence 777 4665 789999 699999873 34432 122 56776544322221
Q ss_pred CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCc---ccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 542 QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTH---LYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 542 ~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~---~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+|+|++++.+++|..... ..+ .|..+.. ........|+..|+..+++|..+|
T Consensus 410 ~~~~L~~L~~~ylg~~~~~--~~~---~~gk~~~~~~~ple~~~~YAa~Dv~~~~~L~~~L 465 (880)
T PRK05755 410 RRHGLDSLAERYLGHKTIS--FEE---VAGKQLTFAQVDLEEAAEYAAEDADVTLRLHEVL 465 (880)
T ss_pred CCCCHHHHHHHHhCCCccc--hHH---hcCCCCCccccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 2499999999999865321 111 1211100 012356789999999999988776
No 102
>PRK07983 exodeoxyribonuclease X; Provisional
Probab=86.31 E-value=4.3 Score=45.00 Aligned_cols=115 Identities=8% Similarity=-0.021 Sum_probs=64.6
Q ss_pred EEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC----CC-CCeEEEEcCCHHHHHHHH
Q psy5921 386 VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV----RT-KPIQMHFVSNEKELFSIF 460 (1200)
Q Consensus 386 vlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~----~~-~~~~V~~~~nEkeLL~~F 460 (1200)
...||+||++ +. + .|+.|++.--.++.. ......+++|...++.. .. .+..+.-...-.+.+..|
T Consensus 2 ~~vlD~ETTG---l~--~---~IieIg~v~v~~~~i--~~~~~~lv~P~~~i~~~~~~ihgIt~e~v~~ap~~~ev~~~~ 71 (219)
T PRK07983 2 LRVIDTETCG---LQ--G---GIVEIASVDVIDGKI--VNPMSHLVRPDRPISPQAMAIHRITEAMVADKPWIEDVIPHY 71 (219)
T ss_pred eEEEEEECCC---CC--C---CCEEEEEEEEECCEE--EEEEEEEECcCCCCCHHHhhcCCCCHHHHcCCCCHHHHHHHH
Confidence 4578999995 32 2 288887653333221 11223456665433211 00 011122223344555554
Q ss_pred HHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhc
Q psy5921 461 IENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVN 540 (1200)
Q Consensus 461 ~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~ 540 (1200)
..-++|+|||.. ||+.+|.. . +.-.+|+++.+|+.+.
T Consensus 72 ------~~~~~lVaHNa~-FD~~~L~~---------~---------------------------~~~~idTl~lar~l~p 108 (219)
T PRK07983 72 ------YGSEWYVAHNAS-FDRRVLPE---------M---------------------------PGEWICTMKLARRLWP 108 (219)
T ss_pred ------cCCCEEEEeCcH-hhHHHHhC---------c---------------------------CCCcEeHHHHHHHHcc
Confidence 245799999985 99988720 0 1124789999988764
Q ss_pred CCCCCHHHHHHHH
Q psy5921 541 LQSYTFENIMYHV 553 (1200)
Q Consensus 541 L~SYsLe~Va~~v 553 (1200)
-..|+|+.+++++
T Consensus 109 ~~~~~l~~L~~~~ 121 (219)
T PRK07983 109 GIKYSNMALYKSR 121 (219)
T ss_pred CCCCCHHHHHHHc
Confidence 3449999888764
No 103
>PHA03144 helicase-primase primase subunit; Provisional
Probab=81.51 E-value=88 Score=40.35 Aligned_cols=245 Identities=14% Similarity=0.155 Sum_probs=132.7
Q ss_pred cccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCC-----C---HH
Q psy5921 789 LKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGK-----T---KQ 860 (1200)
Q Consensus 789 LKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~-----~---~~ 860 (1200)
||-.+-+++|-+- --|.+...+|...+-.|=...-+.+.+ .|+-|==..-|+.|=-++.. + ..
T Consensus 451 lK~aLv~f~GgL~------h~~p~~yr~ii~i~N~Is~~vE~~A~~---~~FAiCtYvkDGfWG~f~~~~~~~~~~~a~~ 521 (746)
T PHA03144 451 LKAALVSFFGGLQ------HICPAAYRALIALANAVSRALERAANA---VGFAVCTYVKDGFWGVLGVDPQDAVSADALA 521 (746)
T ss_pred HHHHHHHHhhhhh------hcCHHHHHHHHHHHHHHHHHHHHHHhh---cCeeEEeecCCceEEeccCCcccccccchhh
Confidence 5555566666553 235677788888777766555555554 78877777788877655533 1 12
Q ss_pred HHHHHHHHHHHHHHc---c----C--CCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHH
Q psy5921 861 EAFEIGKEIANVVTN---N----N--PTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAV 931 (1200)
Q Consensus 861 ea~~ig~ei~~~Vn~---~----~--p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~ 931 (1200)
.|+.+-.......++ . + ..++.|.+|+||...++.+-..|=-.+.+ . ..-+.-|+-. |.-.+..+
T Consensus 522 ~ae~lR~ace~aA~~~L~~~GL~~~~~~~l~LRlEGvyThAvsW~~~~yWLwN~~---~--~~~~~vGFP~-Rs~~a~~a 595 (746)
T PHA03144 522 AAERARAACQAAAEAVLADMGLLLPEGAPLHLRLEGLYTHAVSWSQHGYWLWNRR---T--DTEDFVGFPL-RSAAARAA 595 (746)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeEEeeeeeeecCcceeeccCC---C--CccceeeccC-chHHHHHH
Confidence 222222222222221 1 1 34678899999999999999998544322 1 2234589976 66666667
Q ss_pred HHHHHHHHH-HHhccCCHHHHHHHHHHHHHHHHc----CCCChhhhhHhhcccCCCCCCCCCCchHHH-HHHHHHHhCCC
Q psy5921 932 SKILKKSLC-LLFETKDLSVVKEYVEKQFSKIIS----GRISVQDMTFAKEYRGQAGYKPGACVPALS-LARQWVLTDPR 1005 (1200)
Q Consensus 932 k~i~~~vL~-~Ll~~~d~~~v~~yl~~~~~kl~~----g~v~~~dlii~K~lr~~~~Y~~~~~~P~v~-vA~r~~~~d~~ 1005 (1200)
|+.+..+|+ ..-...|++.+.+-.++..+.|.. .+-+.+ |+. +. ...+.....+|... -+.-++..|
T Consensus 596 k~aL~~lL~~~~~~~~~~~~~~~~a~~~cd~lv~~AF~~R~D~~---fWs-~~-~~~~d~~~~~p~aa~~~g~~lD~d-- 668 (746)
T PHA03144 596 KAALRALLRAAVADSADAETLRQAAREACDRLVLEAFARRLDAE---FWS-VP-TPISDPSDPLPAAAFRGGALLDAD-- 668 (746)
T ss_pred HHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHhhcCCCC---eee-cC-CCcccccccCchhhhccccccccc--
Confidence 777777775 333345667666666666666542 232222 221 11 12232123344321 111122221
Q ss_pred CCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccC--CCCCChHHHhhccchhHHHHHHhh
Q psy5921 1006 AEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDS--SLRLNSEYYITRVIIPPLERCFLL 1065 (1200)
Q Consensus 1006 ~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~--~l~iD~~YYi~kqi~ppl~Rll~~ 1065 (1200)
.|.| ++|.+++.++.+. --|.+++..+ -..||.-.|++- |+..+.++|+-
T Consensus 669 ----~~~R-~~V~v~~~~g~~~----~Vp~~L~p~plvlP~IdC~~hl~p-il~~~~~~l~~ 720 (746)
T PHA03144 669 ----HGSR-RVVRVCGGDCEPV----PVPWDLYPRPLVLPPIDCAHHLRP-ILAEAESMLNG 720 (746)
T ss_pred ----cCCc-eEEEEeCCCCCee----eeeHhhcCCccccCchhHHHHHHH-HHHHHHHHHHH
Confidence 2222 4555555443221 1245554421 136899999974 77888888865
No 104
>cd00007 35EXOc 3'-5' exonuclease. The 35EXOc domain is responsible for the 3'-5' exonuclease proofreading activity of prokaryotic DNA polymerase I (pol I) and other enzymes, it catalyses the hydrolysis of unpaired or mismatched nucleotides. This domain consists of the amino-terminal half of the Klenow fragment in E. coli pol I. 35EXOc is also found in the Werner syndrome helicase (WRN), focus forming activity 1 protein (FFA-1) and ribonuclease D (RNase D).
Probab=79.94 E-value=34 Score=34.19 Aligned_cols=108 Identities=17% Similarity=0.111 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHhhhCCCE-EEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeeh
Q psy5921 453 EKELFSIFIENVRQWDPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINL 531 (1200)
Q Consensus 453 EkeLL~~F~~~I~~~DPDI-IvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl 531 (1200)
...++..|.+++. |+++ ++|||+ .||+.+|.+ .++. ..| .++|+
T Consensus 39 ~~~~~~~l~~~l~--~~~~~~v~~~~-k~d~~~L~~----~~~~---------------------------~~~-~~~D~ 83 (155)
T cd00007 39 LEEDLEALKELLE--DEDITKVGHDA-KFDLVVLAR----DGIE---------------------------LPG-NIFDT 83 (155)
T ss_pred HHHHHHHHHHHHc--CCCCcEEeccH-HHHHHHHHH----CCCC---------------------------CCC-CcccH
Confidence 3456666666666 4564 689998 588887643 2211 112 25787
Q ss_pred HHHHHhhhcCC-CCCHHHHHHHHcCCCcCCCChHhHHHH---HhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 532 WRLLRHEVNLQ-SYTFENIMYHVLHERIPLHSWKLLTCW---WEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 532 ~r~~r~el~L~-SYsLe~Va~~vLg~rk~~~s~~~L~~~---~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.....-.-... +++|++++.++|+..... ..++..| +... ........|...|+..+.+|..++
T Consensus 84 ~~~ayll~~~~~~~~l~~l~~~~l~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~y~~~da~~~~~l~~~l 151 (155)
T cd00007 84 MLAAYLLNPGEGSHSLDDLAKEYLGIELDK--DEQIYGKGAKTFAR--PLSEELLEYAAEDADALLRLYEKL 151 (155)
T ss_pred HHHHHHhCCCCCcCCHHHHHHHHcCCCCcc--HHHHhcCCCCcccc--CCHHHHHHHHHHhHHHHHHHHHHH
Confidence 65444322223 579999999999865321 1223222 0011 114556779999998888887765
No 105
>PF00929 RNase_T: Exonuclease; InterPro: IPR013520 This entry includes a variety of exonuclease proteins, such as ribonuclease T [] and the epsilon subunit of DNA polymerase III. Ribonuclease T is responsible for the end-turnover of tRNA,and removes the terminal AMP residue from uncharged tRNA. DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria, and also exhibits 3' to 5' exonuclease activity.; PDB: 3CM6_A 3CM5_A 3CG7_A 1ZBU_B 1ZBH_A 1W0H_A 3NGY_C 2IS3_B 3NH1_C 3NH2_F ....
Probab=79.47 E-value=1.2 Score=44.89 Aligned_cols=98 Identities=19% Similarity=0.210 Sum_probs=59.4
Q ss_pred EEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCC--CCcCC-----CCCeEEEEcCCHHHHHHH
Q psy5921 387 LAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESE--LPEVR-----TKPIQMHFVSNEKELFSI 459 (1200)
Q Consensus 387 lSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~--~p~~~-----~~~~~V~~~~nEkeLL~~ 459 (1200)
+.||+||++ + ++..++|+.|++....+........--..++|... .+... .....+.......+.+..
T Consensus 1 v~~D~Ettg---~--~~~~~~iieig~v~~~~~~~~~~~~~~~~i~p~~~~~i~~~~~~~~gIt~~~l~~~~~~~~~~~~ 75 (164)
T PF00929_consen 1 VVFDTETTG---L--DPRQDEIIEIGAVKVDDDENEEVESFNSLIRPEEPPKISPWATKVHGITQEDLEDAPSFEEALDE 75 (164)
T ss_dssp EEEEEEESS---S--TTTTCTEEEEEEEEEETTTTEEEEEEEEEBEHSSHCSSEHHHHHHHHHCHHHHHCHCEHHHHHHH
T ss_pred cEEEeEcCC---C--CCCCCeEEEEEEEEeeCCccccceeeeecccccccccCCHHHeeecCCcccccccCCcHHHHHHh
Confidence 479999995 2 34678999999887665432111111223454433 21110 001112233456678888
Q ss_pred HHHHHhhhCCCEEEecCcccccHHHHHHHHHHh
Q psy5921 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVL 492 (1200)
Q Consensus 460 F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~l 492 (1200)
|.+++... .+++||| ..||++++..=+..+
T Consensus 76 ~~~~~~~~--~~~v~~n-~~fd~~~l~~~~~~~ 105 (164)
T PF00929_consen 76 FEEFLKKN--DILVGHN-ASFDIGFLRREDKRF 105 (164)
T ss_dssp HHHHHHHH--TEEEETT-CCHEEESSHHHHHHH
T ss_pred hhhhhhcc--ccccccc-ccchhhHHHHhhhhc
Confidence 99999865 8999999 789988876655443
No 106
>cd06148 Egl_like_exo DEDDy 3'-5' exonuclease domain of Drosophila Egalitarian (Egl) and similar proteins. The Egalitarian (Egl) protein subfamily is composed of Drosophila Egl and similar proteins. Egl is a component of an mRNA-binding complex which is required for oocyte specification. Egl contains a DEDDy-type DnaQ-like 3'-5' exonuclease domain possessing three conserved sequence motifs termed ExoI, ExoII and ExoIII, with a specific YX(3)D pattern at ExoIII. The motifs are clustered around the active site and contain four conserved acidic residues that serve as ligands for the two metal ions required for catalysis. The conservation of this subfamily throughout eukaryotes suggests that its members may be part of ancient RNA processing complexes that are likely to participate in the regulated processing of specific mRNAs. Some members of this subfamily do not have a completely conserved YX(3)D pattern at the ExoIII motif.
Probab=78.21 E-value=26 Score=38.04 Aligned_cols=149 Identities=11% Similarity=0.053 Sum_probs=83.0
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIE 462 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~ 462 (1200)
.-++++||+|+...+ . ..+|..|.++...+ .+++++... ..+ ...+..+..
T Consensus 9 ~~~~i~~D~E~~~~~---~---~~~~~LiQia~~~~--------~v~l~D~~~--------------~~~-~~~~~~L~~ 59 (197)
T cd06148 9 KQKVIGLDCEGVNLG---R---KGKLCLVQIATRTG--------QIYLFDILK--------------LGS-IVFINGLKD 59 (197)
T ss_pred hCCEEEEEcccccCC---C---CCCEEEEEEeeCCC--------cEEEEEhhh--------------ccc-hhHHHHHHH
Confidence 357899999997432 1 34566665554311 155554321 111 123344444
Q ss_pred HHhhhCCCEE-EecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh--
Q psy5921 463 NVRQWDPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV-- 539 (1200)
Q Consensus 463 ~I~~~DPDII-vGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el-- 539 (1200)
++. ||+|+ +||++. .|+..|.+ .+|+.. .| ++|+.-... .+
T Consensus 60 iLe--~~~i~Kv~h~~k-~D~~~L~~---~~gi~~---------------------------~~--~fDt~iA~~-lL~~ 103 (197)
T cd06148 60 ILE--SKKILKVIHDCR-RDSDALYH---QYGIKL---------------------------NN--VFDTQVADA-LLQE 103 (197)
T ss_pred Hhc--CCCccEEEEech-hHHHHHHH---hcCccc---------------------------cc--eeeHHHHHH-HHHH
Confidence 444 67765 899984 67776643 234421 12 367653321 11
Q ss_pred -------cCCCCCHHHHHHHHcCCCcCCCC------hHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 540 -------NLQSYTFENIMYHVLHERIPLHS------WKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 540 -------~L~SYsLe~Va~~vLg~rk~~~s------~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.....+|.+++.++|+.+.+..+ ..+.+.|.... -....+.|+..||...+.|...|
T Consensus 104 ~~~~~~~~~~~~~L~~l~~~~l~~~~~k~~~~~~~~~~~~s~W~~RP---Lt~~ql~YAa~Dv~~Ll~l~~~l 173 (197)
T cd06148 104 QETGGFNPDRVISLVQLLDKYLYISISLKEDVKKLMREDPKFWALRP---LTEDMIRYAALDVLCLLPLYYAM 173 (197)
T ss_pred HhcCCccccccccHHHHHHHhhCCChHHHHHHHHHHhcCchhhhcCC---CCHHHHHHHHHHHHhHHHHHHHH
Confidence 11236899999999987643110 01123443322 13567899999999999988876
No 107
>PRK10829 ribonuclease D; Provisional
Probab=73.81 E-value=40 Score=40.45 Aligned_cols=145 Identities=16% Similarity=0.136 Sum_probs=88.1
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~ 461 (1200)
..-.++++|.|....... ...+..|-++. .. +++++++... .+ +..|.
T Consensus 20 ~~~~~lalDtEf~~~~ty-----~~~l~LiQl~~--~~-------~~~LiD~l~~--------------~d----~~~L~ 67 (373)
T PRK10829 20 RAFPAIALDTEFVRTRTY-----YPQLGLIQLYD--GE-------QLSLIDPLGI--------------TD----WSPFK 67 (373)
T ss_pred hcCCeEEEecccccCccC-----CCceeEEEEec--CC-------ceEEEecCCc--------------cc----hHHHH
Confidence 345679999998753222 23455554432 11 2556654321 11 34455
Q ss_pred HHHhhhCCCEE-EecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhc
Q psy5921 462 ENVRQWDPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVN 540 (1200)
Q Consensus 462 ~~I~~~DPDII-vGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~ 540 (1200)
.++. ||+|+ |+|+. .+|+.+|.+. +|+.. +-++|+...+ ..+.
T Consensus 68 ~ll~--~~~ivKV~H~~-~~Dl~~l~~~---~g~~p-----------------------------~~~fDTqiaa-~~lg 111 (373)
T PRK10829 68 ALLR--DPQVTKFLHAG-SEDLEVFLNA---FGELP-----------------------------QPLIDTQILA-AFCG 111 (373)
T ss_pred HHHc--CCCeEEEEeCh-HhHHHHHHHH---cCCCc-----------------------------CCeeeHHHHH-HHcC
Confidence 5554 78987 79987 5899998542 33311 1277885444 3444
Q ss_pred CC-CCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 541 LQ-SYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 541 L~-SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.. +.+|..+++++||...+.- ...++|-... . -...++|+..||...+.|..+|
T Consensus 112 ~~~~~gl~~Lv~~~lgv~ldK~--~~~sDW~~RP--L-s~~ql~YAa~Dv~~L~~l~~~L 166 (373)
T PRK10829 112 RPLSCGFASMVEEYTGVTLDKS--ESRTDWLARP--L-SERQCEYAAADVFYLLPIAAKL 166 (373)
T ss_pred CCccccHHHHHHHHhCCccCcc--cccCCCCCCC--C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 33 6899999999999765432 2334553322 1 2456899999999999998876
No 108
>PHA03181 helicase-primase primase subunit; Provisional
Probab=66.70 E-value=3e+02 Score=35.77 Aligned_cols=244 Identities=15% Similarity=0.111 Sum_probs=134.0
Q ss_pred cccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCC---------CH
Q psy5921 789 LKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGK---------TK 859 (1200)
Q Consensus 789 LKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~---------~~ 859 (1200)
||-..-+++|-+- --|.++..+|-..+-.|=...-+.+.+ .|+-|==.+-|+.|=-+++. ..
T Consensus 460 LK~aLv~f~G~Lk------h~~p~~y~aii~i~N~Is~~vE~~A~~---~~FAiCtYvkDGfWG~F~~~~~~~~~~~~~~ 530 (764)
T PHA03181 460 LKRPIVEFGGLLK------HFREDVYKAIIGIGNHISLEVEATAST---LMFAPCTYVKDGMWGTFIDKANNVIVSPEGN 530 (764)
T ss_pred HHHHHHHHhhhhh------hcCHHHHHHHHHHHHHHHHHHHHHHhh---cCeeEEeecCCceEEecccccccccccchhh
Confidence 5555566666553 235677888888887776655555554 67877777778877555432 11
Q ss_pred HHHH-HHHHHHHHHH----Hc---cCC--CceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchH
Q psy5921 860 QEAF-EIGKEIANVV----TN---NNP--TPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCP 929 (1200)
Q Consensus 860 ~ea~-~ig~ei~~~V----n~---~~p--~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~ 929 (1200)
..++ .+-....+.. .+ .+| .++.|.+|+||...++.+-..|=-.+.+ .. .-+.-|+-. |.....
T Consensus 531 ~~a~~~lR~ac~~aA~~~l~~~GL~~p~~~~l~LRlEGvYThAvsW~~n~yWLwN~~---~~--~~~~vGFP~-r~~~~~ 604 (764)
T PHA03181 531 ENIFETLRVACNESANRLATSIGLRFPDGINLQMRLEGVYTHAMSWNANCYWLWNRN---TR--ESDFVGFPK-QPEFAT 604 (764)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCceEEEeEEeeeeeeecCcceeeccCC---CC--CcceeecCC-CcHHHH
Confidence 2333 2211122222 21 223 4578899999999999998988544322 11 223389954 666788
Q ss_pred HHHHHHHHHHHHHhccCC----HHHHHHHHHHHHHHHHc----CCCChhhhhHhhcccCCCCCCCCCCchHHH--HHHHH
Q psy5921 930 AVSKILKKSLCLLFETKD----LSVVKEYVEKQFSKIIS----GRISVQDMTFAKEYRGQAGYKPGACVPALS--LARQW 999 (1200)
Q Consensus 930 l~k~i~~~vL~~Ll~~~d----~~~v~~yl~~~~~kl~~----g~v~~~dlii~K~lr~~~~Y~~~~~~P~v~--vA~r~ 999 (1200)
.+|+.+..+|+.+....| ++.+.+-.++..+.|.. .+-+.+ |+ ++. .+.| +....|... -+.-+
T Consensus 605 ~ak~~Ls~lL~~i~~~~~~~~~l~~~~~~a~~~cd~Lv~~AF~~R~D~~---fW-S~~-~~~~-~~~~~p~a~~~~~g~l 678 (764)
T PHA03181 605 HAKEALSTLLEEICLCNDTDESLLTIQEKVQKVFEELLYMAFKKRGDAS---FW-SCP-TESY-DDTLYIVALGSKAAAR 678 (764)
T ss_pred HHHHHHHHHHHHHHhccCCcccHHHHHHHHHHHHHHHHHHHHhhcCCCC---ee-ecC-CCcc-ccCCCcchhccCcccc
Confidence 888999999988765433 55666666666665542 333222 22 111 2233 222233221 11112
Q ss_pred HHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhcc-C--CCCCChHHHhhccchhHHHHHHhh
Q psy5921 1000 VLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQD-S--SLRLNSEYYITRVIIPPLERCFLL 1065 (1200)
Q Consensus 1000 ~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~-~--~l~iD~~YYi~kqi~ppl~Rll~~ 1065 (1200)
+.+|. |.| ++|.+++.++.+ +--|.+++.. + -..||.-.|++- |+..+.++|+-
T Consensus 679 LD~d~------~~R-~~V~v~~~~g~~----v~Vp~~L~p~~p~ilP~IdC~~hl~p-il~~~~~~l~~ 735 (764)
T PHA03181 679 FDTSA------FRR-EMVQTVTTDGNI----VPVTCSLFEGTHFILPAISCIDHMKP-ILSAFSRLLIS 735 (764)
T ss_pred ccccc------Ccc-eEEEEECCCCCE----eeeehhhcCCCceecCchhHHHHHHH-HHHHHHHHHHH
Confidence 22221 111 345555443332 1125555543 1 136899999964 77888888865
No 109
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=64.59 E-value=5.7 Score=34.61 Aligned_cols=23 Identities=26% Similarity=0.735 Sum_probs=19.0
Q ss_pred ccccccCCcccccCCCCCc-cccc
Q psy5921 1104 SVNCVCCNQMTQNNKGVCD-ACLN 1126 (1200)
Q Consensus 1104 ~~~C~~C~~~~~~~~~~C~-~C~~ 1126 (1200)
..+|+.||+.++....+|+ .|..
T Consensus 8 H~HC~VCg~aIp~de~~CSe~C~e 31 (64)
T COG4068 8 HRHCVVCGKAIPPDEQVCSEECGE 31 (64)
T ss_pred CccccccCCcCCCccchHHHHHHH
Confidence 3689999999888888896 5875
No 110
>smart00474 35EXOc 3'-5' exonuclease. 3\' -5' exonuclease proofreading domain present in DNA polymerase I, Werner syndrome helicase, RNase D and other enzymes
Probab=62.81 E-value=1.7e+02 Score=29.66 Aligned_cols=102 Identities=15% Similarity=0.190 Sum_probs=59.8
Q ss_pred HHHHHHHHhhhCCCE-EEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHH
Q psy5921 457 FSIFIENVRQWDPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLL 535 (1200)
Q Consensus 457 L~~F~~~I~~~DPDI-IvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~ 535 (1200)
+..|.+++. |+++ .+|||. .+|+..|. .+|+.. .| ++|+.-..
T Consensus 64 ~~~l~~~l~--~~~~~kv~~d~-k~~~~~L~----~~gi~~---------------------------~~--~~D~~laa 107 (172)
T smart00474 64 LEILKDLLE--DETITKVGHNA-KFDLHVLA----RFGIEL---------------------------EN--IFDTMLAA 107 (172)
T ss_pred HHHHHHHhc--CCCceEEEech-HHHHHHHH----HCCCcc---------------------------cc--hhHHHHHH
Confidence 344445554 4565 689998 57887764 255532 23 26775443
Q ss_pred Hhhh-cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 536 RHEV-NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 536 r~el-~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.-.- ...+++|++++..+|+...+..-.. ..|. .. ......+.|+..|+..+.+|...+
T Consensus 108 yll~p~~~~~~l~~l~~~~l~~~~~~~~~~--~~~~-~~--~l~~~~~~ya~~~a~~~~~L~~~l 167 (172)
T smart00474 108 YLLLGGPSKHGLATLLKEYLGVELDKEEQK--SDWG-AR--PLSEEQLQYAAEDADALLRLYEKL 167 (172)
T ss_pred HHHcCCCCcCCHHHHHHHHhCCCCCcccCc--cccc-cC--CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3211 2233799999999998653221111 1342 22 124567789999998888887665
No 111
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=62.00 E-value=4.2 Score=29.05 Aligned_cols=22 Identities=18% Similarity=0.579 Sum_probs=17.7
Q ss_pred ccccCCcccccCCCCCcccccc
Q psy5921 1106 NCVCCNQMTQNNKGVCDACLNQ 1127 (1200)
Q Consensus 1106 ~C~~C~~~~~~~~~~C~~C~~~ 1127 (1200)
.|+.||+++......|++|..+
T Consensus 1 ~Cp~CG~~~~~~~~fC~~CG~~ 22 (23)
T PF13240_consen 1 YCPNCGAEIEDDAKFCPNCGTP 22 (23)
T ss_pred CCcccCCCCCCcCcchhhhCCc
Confidence 4999999887666779999763
No 112
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=60.69 E-value=7.6 Score=34.26 Aligned_cols=23 Identities=17% Similarity=0.665 Sum_probs=19.7
Q ss_pred cccccCCcccccCCCCCc-ccccc
Q psy5921 1105 VNCVCCNQMTQNNKGVCD-ACLNQ 1127 (1200)
Q Consensus 1105 ~~C~~C~~~~~~~~~~C~-~C~~~ 1127 (1200)
.+|+.||+++..+...|+ .|+..
T Consensus 4 kHC~~CG~~Ip~~~~fCS~~C~~~ 27 (59)
T PF09889_consen 4 KHCPVCGKPIPPDESFCSPKCREE 27 (59)
T ss_pred CcCCcCCCcCCcchhhhCHHHHHH
Confidence 589999999888888895 89884
No 113
>PF13248 zf-ribbon_3: zinc-ribbon domain
Probab=59.56 E-value=5.1 Score=29.29 Aligned_cols=23 Identities=17% Similarity=0.510 Sum_probs=18.4
Q ss_pred cccccCCcccccCCCCCcccccc
Q psy5921 1105 VNCVCCNQMTQNNKGVCDACLNQ 1127 (1200)
Q Consensus 1105 ~~C~~C~~~~~~~~~~C~~C~~~ 1127 (1200)
..|+.||+.+......|++|.+.
T Consensus 3 ~~Cp~Cg~~~~~~~~fC~~CG~~ 25 (26)
T PF13248_consen 3 MFCPNCGAEIDPDAKFCPNCGAK 25 (26)
T ss_pred CCCcccCCcCCcccccChhhCCC
Confidence 57999999766666779999763
No 114
>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines. Several members are annotated as putative helicases.
Probab=57.39 E-value=6.1 Score=29.13 Aligned_cols=22 Identities=18% Similarity=0.511 Sum_probs=18.7
Q ss_pred ccccCCcccccCCCCCcccccc
Q psy5921 1106 NCVCCNQMTQNNKGVCDACLNQ 1127 (1200)
Q Consensus 1106 ~C~~C~~~~~~~~~~C~~C~~~ 1127 (1200)
+|+.|++.+......|+.|...
T Consensus 2 ~CP~C~~~V~~~~~~Cp~CG~~ 23 (26)
T PF10571_consen 2 TCPECGAEVPESAKFCPHCGYD 23 (26)
T ss_pred cCCCCcCCchhhcCcCCCCCCC
Confidence 6999999887777889999875
No 115
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=55.22 E-value=12 Score=50.42 Aligned_cols=48 Identities=21% Similarity=0.482 Sum_probs=31.4
Q ss_pred cccccccCCcccccCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHcccCcCCCC-----CccccCCCCC
Q psy5921 1103 ASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRST-----SNDCISLDCP 1171 (1200)
Q Consensus 1103 ~~~~C~~C~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~~~~~-----~~~C~~~dC~ 1171 (1200)
...+|+.||+. +....|++|..... ....|..|+.... ...|..++=|
T Consensus 666 ~~rkCPkCG~~--t~~~fCP~CGs~te-------------------~vy~CPsCGaev~~des~a~~CP~CGtp 718 (1337)
T PRK14714 666 GRRRCPSCGTE--TYENRCPDCGTHTE-------------------PVYVCPDCGAEVPPDESGRVECPRCDVE 718 (1337)
T ss_pred EEEECCCCCCc--cccccCcccCCcCC-------------------CceeCccCCCccCCCccccccCCCCCCc
Confidence 35899999995 44569999998531 1137999996432 2356555444
No 116
>PHA03140 helicase-primase primase subunit; Provisional
Probab=47.60 E-value=7.8e+02 Score=32.25 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=81.6
Q ss_pred cccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCC---------CH
Q psy5921 789 LKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGK---------TK 859 (1200)
Q Consensus 789 LKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~---------~~ 859 (1200)
||-..-+++|-+- --|.++..+|...+-.|=...-+.+.+ .|+-|-=..-|+.|=-++.. ..
T Consensus 458 LK~aLv~f~GgLr------h~~p~~y~aii~i~N~Is~~vE~~A~~---~~FAiCtYvKDGFWG~F~~~~~~~~~~~~~~ 528 (772)
T PHA03140 458 LKPALVTFFGGLR------HIHPPAYKAIIALANAISACVERAANE---RNFAICTYVKDGFWGAFGDLVPGAVSRDAAR 528 (772)
T ss_pred HHHHHHHHhhhhh------hcCHHHHHHHHHHHHHHHHHHHHHHhh---cCeeEEeeccCceeEecccccccccccchhh
Confidence 4555566666553 235667788888777766555555554 67777667778776554432 12
Q ss_pred HHHHHHHHHHHH----HHH-c---cC--CCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchH
Q psy5921 860 QEAFEIGKEIAN----VVT-N---NN--PTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCP 929 (1200)
Q Consensus 860 ~ea~~ig~ei~~----~Vn-~---~~--p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~ 929 (1200)
..|+.+-..... .+. + .+ ..++.|.+|+||...++.+-..|=-.+. ...... +.-|+-. |.....
T Consensus 529 ~~a~~lR~ace~aA~~~L~~~~GL~~~~~~~l~LRlEGvyThAvsW~~~~yWLwN~--~~~~~~--~~vGFP~-rs~a~~ 603 (772)
T PHA03140 529 AAALALRDDCERAVEAVLRDDLGLRPAEGAEPHLRFEGVFTHAVSWCTTGYWLWNA--TTGESE--HLVGVPC-RSEAAR 603 (772)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCcCCCCCCCceEEEeEEeeeeeeecCcceeeccc--CCCCcc--ceeeccC-ccHHHH
Confidence 333332222222 222 1 12 2457889999999999999888844331 111112 3389854 666777
Q ss_pred HHHHHHHHHH
Q psy5921 930 AVSKILKKSL 939 (1200)
Q Consensus 930 l~k~i~~~vL 939 (1200)
.+|+.+..+|
T Consensus 604 ~ak~~l~~lL 613 (772)
T PHA03140 604 DAKESLAGLL 613 (772)
T ss_pred HHHHHHHHHH
Confidence 7777777777
No 117
>PRK04023 DNA polymerase II large subunit; Validated
Probab=43.80 E-value=24 Score=46.47 Aligned_cols=34 Identities=21% Similarity=0.116 Sum_probs=29.1
Q ss_pred CCcEEEEeeeeecCCchHHHHHHHHHHHHHHhcc
Q psy5921 912 KPIYEAKGIETVRRDGCPAVSKILKKSLCLLFET 945 (1200)
Q Consensus 912 ~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~ 945 (1200)
.|.+..|.=+.+|=|...-+.++..++-++|.-+
T Consensus 370 gPtVrL~nGdV~ridd~~~A~~~~~~VeeIldlG 403 (1121)
T PRK04023 370 GPTVRLKNGDVVRIDDVEEAKEIRDDVEEILDLG 403 (1121)
T ss_pred CCeEEecCCCEEEeCCHHHHHHHhhchhhhhhhh
Confidence 4789999999999999999999988888777654
No 118
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=37.20 E-value=21 Score=45.70 Aligned_cols=47 Identities=21% Similarity=0.494 Sum_probs=31.2
Q ss_pred cccccCCcccccCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHcccCcCC--CCCccccCCCCC
Q psy5921 1105 VNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGR--STSNDCISLDCP 1171 (1200)
Q Consensus 1105 ~~C~~C~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~~~--~~~~~C~~~dC~ 1171 (1200)
..|+.||..+....-.|.+|...-. ...|..|+.. ...-.|.+++.+
T Consensus 2 ~~Cp~Cg~~n~~~akFC~~CG~~l~--------------------~~~Cp~CG~~~~~~~~fC~~CG~~ 50 (645)
T PRK14559 2 LICPQCQFENPNNNRFCQKCGTSLT--------------------HKPCPQCGTEVPVDEAHCPNCGAE 50 (645)
T ss_pred CcCCCCCCcCCCCCccccccCCCCC--------------------CCcCCCCCCCCCcccccccccCCc
Confidence 4699999876666667999977431 1358888843 344567766665
No 119
>PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=35.90 E-value=19 Score=35.66 Aligned_cols=25 Identities=24% Similarity=0.485 Sum_probs=18.5
Q ss_pred ccccccCCcccc--cCC-CCCcccccch
Q psy5921 1104 SVNCVCCNQMTQ--NNK-GVCDACLNQT 1128 (1200)
Q Consensus 1104 ~~~C~~C~~~~~--~~~-~~C~~C~~~~ 1128 (1200)
...|+.||++|- ... .+|+.|....
T Consensus 9 KR~Cp~CG~kFYDLnk~PivCP~CG~~~ 36 (108)
T PF09538_consen 9 KRTCPSCGAKFYDLNKDPIVCPKCGTEF 36 (108)
T ss_pred cccCCCCcchhccCCCCCccCCCCCCcc
Confidence 468999999873 233 5599999853
No 120
>TIGR03826 YvyF flagellar operon protein TIGR03826. This gene is found in flagellar operons of Bacillus-related organisms. Its function has not been determined and an official gene symbol has not been assigned, although the gene is designated yvyF in B. subtilus. A tentative assignment as a regulator is suggested in the NCBI record GI:16080597.
Probab=32.68 E-value=48 Score=34.24 Aligned_cols=65 Identities=12% Similarity=0.288 Sum_probs=41.5
Q ss_pred ChHHHhhccch--hHHHHHHhhcCCCh---hhhhhcCCcceeecCcccccccccccccccc-ccccccccCCcccccCCC
Q psy5921 1046 NSEYYITRVII--PPLERCFLLLGTPV---LPWYKNLPRKLHVYLPSVLNERKKKSTISQY-FASVNCVCCNQMTQNNKG 1119 (1200)
Q Consensus 1046 D~~YYi~kqi~--ppl~Rll~~~G~d~---~~w~~~~~~~~~~~~~~~~~~~~~~~~i~~~-~~~~~C~~C~~~~~~~~~ 1119 (1200)
.+.-||..+=- ..+..|-+..||++ .+|..+- | -.+.++ -....|-.||+.+ ..+-
T Consensus 34 kV~~yLr~~p~~~ati~eV~e~tgVs~~~I~~~IreG-R----------------L~~~~~~nl~~~CE~CG~~I-~~Gr 95 (137)
T TIGR03826 34 KVYKFLRKHENRQATVSEIVEETGVSEKLILKFIREG-R----------------LQLKHFPNLGYPCERCGTSI-REGR 95 (137)
T ss_pred HHHHHHHHCCCCCCCHHHHHHHHCcCHHHHHHHHHcC-C----------------eeccCCCCCcCcccccCCcC-CCCC
Confidence 34557766544 66788888899985 5676652 1 011111 1247999999975 3456
Q ss_pred CCcccccch
Q psy5921 1120 VCDACLNQT 1128 (1200)
Q Consensus 1120 ~C~~C~~~~ 1128 (1200)
+|.+|..+-
T Consensus 96 ~C~~C~~~l 104 (137)
T TIGR03826 96 LCDSCAGEL 104 (137)
T ss_pred ccHHHHHHH
Confidence 799998853
No 121
>PF14952 zf-tcix: Putative treble-clef, zinc-finger, Zn-binding
Probab=32.38 E-value=22 Score=29.40 Aligned_cols=29 Identities=17% Similarity=0.505 Sum_probs=23.2
Q ss_pred HHHHcccCc--CCCCCccccCCCCCceeEee
Q psy5921 1149 VNKVCTTCV--GRSTSNDCISLDCPVLYRKT 1177 (1200)
Q Consensus 1149 ~~~~C~~C~--~~~~~~~C~~~dC~v~y~~~ 1177 (1200)
.-..|..|+ +-+|...|-|..|+..++..
T Consensus 10 GirkCp~CGt~NG~R~~~CKN~~C~~~~~~~ 40 (44)
T PF14952_consen 10 GIRKCPKCGTYNGTRGLSCKNKSCPQVFNVL 40 (44)
T ss_pred ccccCCcCcCccCcccccccCCccchhhhcc
Confidence 346799999 56888999999999766544
No 122
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=28.78 E-value=19 Score=46.69 Aligned_cols=51 Identities=22% Similarity=0.436 Sum_probs=0.0
Q ss_pred cccccccccccccCCcccccCCCCCcccccchhhhHHHHHHHHHHHHHHHHHHHHHcccCcCCCCCccccCC
Q psy5921 1097 TISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISL 1168 (1200)
Q Consensus 1097 ~i~~~~~~~~C~~C~~~~~~~~~~C~~C~~~~~~~~~~~~~~~~~~e~~~~~~~~~C~~C~~~~~~~~C~~~ 1168 (1200)
+|.--.....|+.||. .+....|+.|..... ....|..|+.....-.|..+
T Consensus 648 ~i~vei~~r~Cp~Cg~--~t~~~~Cp~CG~~T~-------------------~~~~Cp~C~~~~~~~~C~~C 698 (900)
T PF03833_consen 648 TIEVEIGRRRCPKCGK--ETFYNRCPECGSHTE-------------------PVYVCPDCGIEVEEDECPKC 698 (900)
T ss_dssp ------------------------------------------------------------------------
T ss_pred eeEEeeecccCcccCC--cchhhcCcccCCccc-------------------cceeccccccccCccccccc
Confidence 3443344678999999 567788999988431 22568888876555555544
No 123
>TIGR01388 rnd ribonuclease D. This model describes ribonuclease D, a 3'-exonuclease shown to act on tRNA both in vitro and when overexpressed in vivo. Trusted members of this family are restricted to the Proteobacteria; Aquifex, Mycobacterial, and eukaryotic homologs are not full-length homologs. Ribonuclease D is not essential in E. coli and is deleterious when overexpressed. Its precise biological role is still unknown.
Probab=27.21 E-value=5.5e+02 Score=30.82 Aligned_cols=102 Identities=17% Similarity=0.138 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhCCCEE-EecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHH
Q psy5921 457 FSIFIENVRQWDPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLL 535 (1200)
Q Consensus 457 L~~F~~~I~~~DPDII-vGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~ 535 (1200)
+..|.+++. ||+|+ +||+. .+|+..|.+. +.. .++ .++|+.-..
T Consensus 59 ~~~L~~lL~--d~~i~KV~h~~-k~Dl~~L~~~----~~~---------------------------~~~-~~fDtqlAa 103 (367)
T TIGR01388 59 WSPLKELLR--DESVVKVLHAA-SEDLEVFLNL----FGE---------------------------LPQ-PLFDTQIAA 103 (367)
T ss_pred HHHHHHHHC--CCCceEEEeec-HHHHHHHHHH----hCC---------------------------CCC-CcccHHHHH
Confidence 445555554 77874 89987 4677766321 111 111 257775433
Q ss_pred HhhhcC-CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 536 RHEVNL-QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 536 r~el~L-~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
..+.. .+++|.+++..+||...+. ....+.|.. .+ -....+.|...|+.....|..+|
T Consensus 104 -~lL~~~~~~~l~~Lv~~~Lg~~l~K--~~~~sdW~~-rP--L~~~q~~YAa~Dv~~L~~L~~~L 162 (367)
T TIGR01388 104 -AFCGFGMSMGYAKLVQEVLGVELDK--SESRTDWLA-RP--LTDAQLEYAAADVTYLLPLYAKL 162 (367)
T ss_pred -HHhCCCCCccHHHHHHHHcCCCCCc--ccccccCCC-CC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 23332 3579999999999875432 112223321 11 12456889999998888887766
No 124
>PF03337 Pox_F12L: Poxvirus F12L protein; InterPro: IPR005005 The vaccinia virus F12L gene encodes a 65 kDa protein that is expressed late during infection and is important for plaque formation, EEV production and virulence. The F12L protein is located on intracellular enveloped virus (IEV) particles, but is absent from immature virions, intracellular mature virus and cell-associated enveloped virus. F12L shows co-localization with endosomal compartments and microtubules and appears to play a role in the the transport of IEV particles to the cell surface on microtubules [].; GO: 0016032 viral reproduction
Probab=25.93 E-value=1.4e+02 Score=38.10 Aligned_cols=99 Identities=21% Similarity=0.172 Sum_probs=62.4
Q ss_pred CCcceEEEEEEEeccCCC----CCC-CCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHH
Q psy5921 381 NYYLTVLAVEIHAISRAL----LKP-DPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKE 455 (1200)
Q Consensus 381 ~p~LtvlSlDIeT~t~~~----l~P-dp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEke 455 (1200)
-|.+.++..||+..+... +.| +|....|.+|+.-. -....+-.-..+.+.| +-....+++=+.
T Consensus 189 RPE~DIl~~di~~ia~~~~W~~~~~~~~~~~~v~ai~v~a--~it~~gp~iymIstyP----------G~~F~nf~s~~~ 256 (651)
T PF03337_consen 189 RPEIDILPYDIKAIAQKSNWSKLRPYNPRALKVFAISVNA--IITPNGPSIYMISTYP----------GKCFINFDSNKA 256 (651)
T ss_pred CccceeecccHHhhhchhcccccccCCcccceEEEEEEEE--EecCCCceeEEEEecC----------CceEEeCCCchH
Confidence 588999999999987542 244 44445666665321 1110100111222222 122346777778
Q ss_pred HHHHHHHHHhh-hC----CCEEEecCcccccHHHHHHHHHH
Q psy5921 456 LFSIFIENVRQ-WD----PDILIGYEIETLSWGYLLERGYV 491 (1200)
Q Consensus 456 LL~~F~~~I~~-~D----PDIIvGyNi~~FDlpYL~~Ra~~ 491 (1200)
|+..|+++|++ .. -=+|+||=..-||+|.|.++.-.
T Consensus 257 li~~FL~Wl~e~~~~n~~ti~LvGy~ss~FD~pLLra~wp~ 297 (651)
T PF03337_consen 257 LISDFLKWLRECIMKNIRTIILVGYFSSFFDFPLLRAYWPK 297 (651)
T ss_pred HHHHHHHHHHHHHhccCceEEEeehhhhhhccHHHHhhccc
Confidence 99999999999 43 22789999999999999887643
No 125
>PF12773 DZR: Double zinc ribbon
Probab=24.95 E-value=36 Score=28.37 Aligned_cols=21 Identities=19% Similarity=0.613 Sum_probs=12.1
Q ss_pred cccCCcccccCCCCCcccccc
Q psy5921 1107 CVCCNQMTQNNKGVCDACLNQ 1127 (1200)
Q Consensus 1107 C~~C~~~~~~~~~~C~~C~~~ 1127 (1200)
|+.|++.+......|++|...
T Consensus 1 Cp~Cg~~~~~~~~fC~~CG~~ 21 (50)
T PF12773_consen 1 CPHCGTPNPDDAKFCPHCGTP 21 (50)
T ss_pred CCCcCCcCCccccCChhhcCC
Confidence 566666554444556666663
No 126
>TIGR02300 FYDLN_acid conserved hypothetical protein TIGR02300. Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues. The function of members of this family is unknown.
Probab=23.70 E-value=43 Score=34.00 Aligned_cols=25 Identities=12% Similarity=-0.031 Sum_probs=18.7
Q ss_pred ccccccCCccccc---CCCCCcccccch
Q psy5921 1104 SVNCVCCNQMTQN---NKGVCDACLNQT 1128 (1200)
Q Consensus 1104 ~~~C~~C~~~~~~---~~~~C~~C~~~~ 1128 (1200)
...|+.||++|-- ...+|+.|....
T Consensus 9 Kr~Cp~cg~kFYDLnk~p~vcP~cg~~~ 36 (129)
T TIGR02300 9 KRICPNTGSKFYDLNRRPAVSPYTGEQF 36 (129)
T ss_pred cccCCCcCccccccCCCCccCCCcCCcc
Confidence 4689999998732 335699999864
No 127
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=23.01 E-value=93 Score=33.52 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=25.6
Q ss_pred cccccCCccccc-----CCCCCcccccc-----hhhhHHHHHHHHHHHHHHH
Q psy5921 1105 VNCVCCNQMTQN-----NKGVCDACLNQ-----TQLLGTCLYYKIQAWQRSQ 1146 (1200)
Q Consensus 1105 ~~C~~C~~~~~~-----~~~~C~~C~~~-----~~~~~~~~~~~~~~~e~~~ 1146 (1200)
..|+.|+.++.. .+..|+.|... ....+..|..++.+++..+
T Consensus 118 Y~Cp~C~~rytf~eA~~~~F~Cp~Cg~~L~~~dn~~~~~~l~~~I~~l~~~~ 169 (178)
T PRK06266 118 FFCPNCHIRFTFDEAMEYGFRCPQCGEMLEEYDNSELIKELKEQIKELEEEL 169 (178)
T ss_pred EECCCCCcEEeHHHHhhcCCcCCCCCCCCeecccHHHHHHHHHHHHHHHHHh
Confidence 379999987632 34569999875 2334444555555555443
No 128
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=22.23 E-value=46 Score=38.25 Aligned_cols=23 Identities=17% Similarity=0.387 Sum_probs=17.5
Q ss_pred ccccccCCcccccCCCCCccccc
Q psy5921 1104 SVNCVCCNQMTQNNKGVCDACLN 1126 (1200)
Q Consensus 1104 ~~~C~~C~~~~~~~~~~C~~C~~ 1126 (1200)
-..|+.|+..+.+-...|+-|.-
T Consensus 308 Gy~CP~CktkVCsLPi~CP~Csl 330 (421)
T COG5151 308 GYECPVCKTKVCSLPISCPICSL 330 (421)
T ss_pred ceeCCcccceeecCCccCcchhH
Confidence 46899999876555566999965
No 129
>COG0615 TagD Cytidylyltransferase [Cell envelope biogenesis, outer membrane / Lipid metabolism]
Probab=21.62 E-value=1.2e+02 Score=31.59 Aligned_cols=34 Identities=24% Similarity=0.362 Sum_probs=28.0
Q ss_pred HHHHhhhCCCEEE-ecCcccccHHHHHHHHHHhCCC
Q psy5921 461 IENVRQWDPDILI-GYEIETLSWGYLLERGYVLGLN 495 (1200)
Q Consensus 461 ~~~I~~~DPDIIv-GyNi~~FDlpYL~~Ra~~lgi~ 495 (1200)
++.|.+++|||++ |++.. ||-+.|...+...|+.
T Consensus 79 ~~~i~~~k~Div~lG~D~~-~d~~~l~~~~~k~G~~ 113 (140)
T COG0615 79 FEDIEEYKPDIVVLGDDQK-FDEDDLKYELVKRGLF 113 (140)
T ss_pred hHHHHHhCCCEEEECCCCc-CChHHHHHHHHHcCCe
Confidence 4677889999886 77777 9999999999886654
No 130
>PF14205 Cys_rich_KTR: Cysteine-rich KTR
Probab=21.17 E-value=53 Score=28.60 Aligned_cols=23 Identities=26% Similarity=0.593 Sum_probs=15.6
Q ss_pred cccccCCccccc---------CCC-CCcccccc
Q psy5921 1105 VNCVCCNQMTQN---------NKG-VCDACLNQ 1127 (1200)
Q Consensus 1105 ~~C~~C~~~~~~---------~~~-~C~~C~~~ 1127 (1200)
..||.||..... ... .|++|++.
T Consensus 5 i~CP~CgnKTR~kir~DT~LkNfPlyCpKCK~E 37 (55)
T PF14205_consen 5 ILCPICGNKTRLKIREDTVLKNFPLYCPKCKQE 37 (55)
T ss_pred EECCCCCCccceeeecCceeccccccCCCCCce
Confidence 579999975411 223 49999885
No 131
>PRK00420 hypothetical protein; Validated
Probab=20.94 E-value=55 Score=32.68 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=18.2
Q ss_pred cccccccCCccccc-C--CCCCcccccc
Q psy5921 1103 ASVNCVCCNQMTQN-N--KGVCDACLNQ 1127 (1200)
Q Consensus 1103 ~~~~C~~C~~~~~~-~--~~~C~~C~~~ 1127 (1200)
...+||.||.++.. . ...|+.|...
T Consensus 22 l~~~CP~Cg~pLf~lk~g~~~Cp~Cg~~ 49 (112)
T PRK00420 22 LSKHCPVCGLPLFELKDGEVVCPVHGKV 49 (112)
T ss_pred ccCCCCCCCCcceecCCCceECCCCCCe
Confidence 35899999998643 2 2459999874
No 132
>PF07282 OrfB_Zn_ribbon: Putative transposase DNA-binding domain; InterPro: IPR010095 This entry represents a region of a sequence similarity between a family of putative transposases of Thermoanaerobacter tengcongensis, smaller related proteins from Bacillus anthracis, putative transposes described by IPR001959 from INTERPRO, and other proteins. More information about these proteins can be found at Protein of the Month: Transposase [].
Probab=20.07 E-value=81 Score=28.08 Aligned_cols=30 Identities=17% Similarity=0.425 Sum_probs=20.9
Q ss_pred cccccccccccCCccccc--C--CCCCcccccch
Q psy5921 1099 SQYFASVNCVCCNQMTQN--N--KGVCDACLNQT 1128 (1200)
Q Consensus 1099 ~~~~~~~~C~~C~~~~~~--~--~~~C~~C~~~~ 1128 (1200)
+.++.+..|+.||..... . ...|++|....
T Consensus 23 ~~~~TSq~C~~CG~~~~~~~~~r~~~C~~Cg~~~ 56 (69)
T PF07282_consen 23 DEAYTSQTCPRCGHRNKKRRSGRVFTCPNCGFEM 56 (69)
T ss_pred CCCCCccCccCcccccccccccceEEcCCCCCEE
Confidence 345678899999997543 1 23599998753
Done!