Query psy5921
Match_columns 1200
No_of_seqs 417 out of 1754
Neff 6.1
Searched_HMMs 29240
Date Fri Aug 16 21:53:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5921.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5921hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iay_A DNA polymerase delta ca 100.0 3E-135 9E-140 1290.4 67.8 703 327-1068 184-910 (919)
2 2gv9_A DNA polymerase; polymer 100.0 1E-118 5E-123 1156.1 56.7 709 327-1069 252-1138(1193)
3 1qht_A Protein (DNA polymerase 100.0 5E-117 2E-121 1112.6 52.0 621 382-1074 133-756 (775)
4 3k59_A POL II, DNA polymerase 100.0 5E-112 2E-116 1060.5 54.5 638 332-1075 113-780 (786)
5 3qex_A DNA polymerase, GP43; d 100.0 3E-112 9E-117 1066.5 39.7 653 381-1072 105-893 (903)
6 1s5j_A DNA polymerase I; repli 100.0 1E-100 4E-105 970.4 39.0 661 327-1075 118-831 (847)
7 1noy_A Protein (DNA polymerase 100.0 2.4E-35 8.1E-40 344.9 23.3 250 381-648 103-382 (388)
8 2py5_A DNA polymerase; protein 100.0 8.4E-30 2.9E-34 310.8 17.3 416 385-905 7-505 (575)
9 3flo_B DNA polymerase alpha ca 98.8 2.6E-09 8.9E-14 113.5 3.7 94 1104-1198 22-139 (206)
10 3abd_X REV3, HREV3, DNA polyme 98.5 3.3E-08 1.1E-12 77.9 1.5 30 89-118 23-52 (52)
11 1y97_A Three prime repair exon 98.2 8.8E-06 3E-10 88.3 13.7 183 384-620 10-225 (238)
12 3mxm_B Three prime repair exon 98.2 1.4E-05 4.6E-10 87.6 14.7 182 385-619 13-229 (242)
13 3u3y_B Three prime repair exon 98.1 4.1E-05 1.4E-09 86.6 15.3 183 384-619 12-229 (314)
14 2p1j_A POLIII, DNA polymerase 98.0 4E-05 1.4E-09 80.2 12.5 157 383-599 11-172 (186)
15 1zbh_A 3'-5' exonuclease ERI1; 97.6 0.00076 2.6E-08 75.9 15.1 169 383-599 77-259 (299)
16 1w0h_A 3'-5' exonuclease ERI1; 97.5 0.00074 2.5E-08 71.2 14.1 165 383-599 9-191 (204)
17 3v9w_A Ribonuclease T; DEDD nu 97.5 0.00095 3.2E-08 72.2 14.4 166 382-599 35-217 (235)
18 2gui_A DNA polymerase III epsi 97.5 0.0014 4.9E-08 68.6 15.1 166 383-599 8-181 (194)
19 2f96_A Ribonuclease T; RNAse, 97.3 0.0013 4.4E-08 70.7 12.8 166 382-599 27-209 (224)
20 1zbu_A ERI-1 homolog, 3'-5' ex 97.2 0.00072 2.5E-08 77.8 9.2 169 383-599 127-309 (349)
21 2qxf_A Exodeoxyribonuclease I; 96.6 0.034 1.2E-06 66.5 16.9 166 383-599 8-197 (482)
22 2xri_A ERI1 exoribonuclease 3; 96.5 0.014 4.7E-07 62.7 12.0 164 384-599 31-210 (224)
23 3cg7_A CRN-4, cell death-relat 95.0 0.089 3E-06 59.4 10.8 164 382-599 17-205 (308)
24 2igi_A Oligoribonuclease; RNAs 94.5 0.022 7.4E-07 58.8 3.9 103 383-492 4-122 (180)
25 3tr8_A Oligoribonuclease; tran 94.1 0.035 1.2E-06 58.2 4.6 103 382-492 7-126 (186)
26 1x9m_A DNA polymerase; DNA plo 92.2 0.54 1.9E-05 58.8 11.9 155 386-599 1-179 (698)
27 2kfn_A Klenow fragment of DNA 92.0 2.2 7.4E-05 52.5 16.7 154 385-599 27-189 (605)
28 2gbz_A Oligoribonuclease; ORN, 90.5 0.14 4.9E-06 53.5 3.6 104 382-492 7-126 (194)
29 1wlj_A Interferon stimulated g 83.6 0.6 2.1E-05 48.5 3.4 151 383-599 4-165 (189)
30 2e6m_A Werner syndrome ATP-dep 83.2 3.8 0.00013 42.8 9.4 96 468-599 94-191 (208)
31 3saf_A Exosome component 10; e 79.5 7.6 0.00026 45.7 11.1 143 385-599 130-273 (428)
32 1vk0_A Hypothetical protein; h 75.0 6.6 0.00023 41.5 8.1 101 459-599 99-203 (206)
33 3pv8_A DNA polymerase I; DNA p 62.7 33 0.0011 41.9 11.7 144 386-599 31-177 (592)
34 2hbj_A Exosome complex exonucl 31.9 45 0.0015 38.8 5.6 143 385-599 107-250 (410)
35 3abd_X REV3, HREV3, DNA polyme 25.7 35 0.0012 27.4 2.1 19 197-215 28-46 (52)
36 1yt3_A Ribonuclease D, RNAse D 21.1 92 0.0031 35.5 5.5 142 385-599 23-166 (375)
No 1
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-135 Score=1290.36 Aligned_cols=703 Identities=26% Similarity=0.424 Sum_probs=615.0
Q ss_pred CCChhhHHHHHHHhhc-CCCcccccccc-c---ccCCcCCcceEeecccCccccccc-----ccCCcceEEEEEEEeccC
Q psy5921 327 DFNPDLFKSFIRKQLE-TPKRRICDSYA-I---DAMTPDTTGDYQMGLDNLNEVTSH-----VENYYLTVLAVEIHAISR 396 (1200)
Q Consensus 327 ~~n~~l~e~f~~~~~~-~g~cwl~i~~~-i---~~~~~~s~~~fev~~~~~~~~~~~-----~~~p~LtvlSlDIeT~t~ 396 (1200)
+ |-.....|+. .++ +|+||++++.+ + ....+.+||++|+.+...+.+... ...|||++|||||||.++
T Consensus 184 E-dI~~~~Rfli-D~~I~g~~W~~i~~~~~~~~~~~~~~S~c~~Ev~v~~~~l~~~~~~~~~~~~PplrilSfDIEt~~~ 261 (919)
T 3iay_A 184 D-NIAYTLRLMV-DCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLIAHPAEGDWSHTAPLRIMSFDIECAGR 261 (919)
T ss_dssp C-CCCHHHHHHH-HHTCCTTCEEEECTTSEEECCGGGCCBCCSEEEEEETTTCEEECSSGGGSCCCCCEEEEEEEEECCC
T ss_pred c-CCChHhhhee-ecCCccceEEEEecCcceeccccCCccceeEEEEeeccccccccccccccCCCCceEEEEEEEECCC
Confidence 6 8888999999 888 99999999876 3 233568999999876544333221 246999999999999999
Q ss_pred CCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecC
Q psy5921 397 ALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYE 476 (1200)
Q Consensus 397 ~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyN 476 (1200)
+++||+|++|+|++||++++.++...+..+.++.+.++... .+..|..|++|++||.+|+++|+++|||||+|||
T Consensus 262 ~g~fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~l~~~~~~-----~~~~V~~~~sE~eLL~~F~~~i~~~DPDIIvGyN 336 (919)
T 3iay_A 262 IGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPI-----TGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYN 336 (919)
T ss_dssp TTSCCCTTTCCEEEEEEEEEETTCSSCSEEEEEEESCCCCB-----TTBEEEEESSHHHHHHHHHHHHHHHCCSEEEESS
T ss_pred CCCCCCCCCCcEEEEEEEEecCCCcccceeEEEEecCCCCC-----CCCeEEECCCHHHHHHHHHHHHHHhCCCEEEecC
Confidence 88999999999999999887766544445667777765432 3578999999999999999999999999999999
Q ss_pred cccccHHHHHHHHHHhCCCCcccccccccccc-c---ccCc---cccccceeeecceEEeehHHHHHhhhcCCCCCHHHH
Q psy5921 477 IETLSWGYLLERGYVLGLNLNQELSRITEVEK-R---NSSR---DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENI 549 (1200)
Q Consensus 477 i~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~-~---~~s~---~~~~~~~~~i~GRlvlDl~r~~r~el~L~SYsLe~V 549 (1200)
+.+||||||.+||..+|++.|+.+||.+.... . .++. +.+....+.+.||++||+|+.+++++++.||+|++|
T Consensus 337 i~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~~~g~~~~~~~~i~GR~~lDl~~~~k~~~~l~sysL~~V 416 (919)
T 3iay_A 337 TTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREYKLRSYTLNAV 416 (919)
T ss_dssp TTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEETTTEEEEECCBCCTTCEEEEHHHHHHHHCCCSCCCHHHH
T ss_pred CccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccccccccccceeEEcCeEEEEhHHHHHhhcCCCCCCHHHH
Confidence 99999999999999999999989999864321 1 1111 112234578999999999999999999999999999
Q ss_pred HHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCcchhhhh
Q psy5921 550 MYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE 629 (1200)
Q Consensus 550 a~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvE 629 (1200)
|+++||+++++++++++.+||+.+. ..+.+++.||++||.++++|+.++++++++.|+|+++|++|+++++||+|++||
T Consensus 417 a~~~Lg~~K~dv~~~~I~~l~~~~~-~~~~~L~~Y~~~Da~l~~~L~~kl~~l~~~~elArl~Gi~~~~vl~rG~qi~ve 495 (919)
T 3iay_A 417 SAHFLGEQKEDVHYSIISDLQNGDS-ETRRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVV 495 (919)
T ss_dssp HHHHHCCC------CCHHHHHTSCH-HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHCCCHHHHHHSCHHHHHH
T ss_pred HHHhcccCCCCCCHHHHHHHHhcCh-hhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHcCCCHHHhhcccchHHHH
Confidence 9999999999999999999998642 468899999999999999999999999999999999999999999999999999
Q ss_pred hhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCC
Q psy5921 630 SIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSD 709 (1200)
Q Consensus 630 slLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~ 709 (1200)
++|+|+|+++|||+|++... .....+.||+||||++|||++||++|||+|||||||++|||||||+++... .
T Consensus 496 s~Llr~a~~~~~ilP~~~~~---~~~~~y~Gg~V~eP~~G~y~~pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~-~---- 567 (919)
T 3iay_A 496 SQLFRKCLEIDTVIPNMQSQ---ASDDQYEGATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKAT-V---- 567 (919)
T ss_dssp HHHHHHHHHTTEECBCCCCC---CCSSCCCCCCBCCCCCEEECSCEEEEEETTHHHHHHHHTTCSGGGEECHHH-H----
T ss_pred HHHHHHHhhCCeeCCCcccc---cccccCCCCEEecCCCCceeccEEEEEecccchHHHHhcCcCcccccccch-h----
Confidence 99999999999999876532 123567799999999999999999999999999999999999999986321 0
Q ss_pred CCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhc
Q psy5921 710 SFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGL 789 (1200)
Q Consensus 710 ~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~AL 789 (1200)
..+...+ .+++..+|+|..|+++++++||||++|++|+++|+++|+.||+. .|+.++++||+||+|+
T Consensus 568 ------~~~~~~~------~~~~~~~p~g~~f~~~~~~~gilp~~l~~ll~~R~~~K~~mk~~-~d~~~~~~ld~~Q~Al 634 (919)
T 3iay_A 568 ------ERLNLKI------DEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDE-KDPFKRDVLNGRQLAL 634 (919)
T ss_dssp ------HHTTCCB------TTTEEECTTSCEEECTTTCCCHHHHHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHH
T ss_pred ------hhcCCCC------CcceeeCCCCcEEeccCCCCCchHHHHHHHHHHHHHHHHHHhhc-CChHHHHHHHHHHHhh
Confidence 0000000 13677899999999999999999999999999999999999985 4799999999999999
Q ss_pred ccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccc------CcCcceEEeccCCceeEecCCCCHHHHH
Q psy5921 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNT------SKWQCRVVYGDTDSMFVLAPGKTKQEAF 863 (1200)
Q Consensus 790 KllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~------~~~g~~VIYGDTDSvfV~~~~~~~~ea~ 863 (1200)
|++|||+|||+|+++ |||||.++|++||+.||++|++|++++|+. +++|++|||||||||||++++.+.++|+
T Consensus 635 Ki~~NS~YG~~G~~~-~r~~~~~iA~siT~~GR~~l~~t~~~ie~~~~~~~g~~~~~~ViYGDTDSvfv~~~~~~~~~~~ 713 (919)
T 3iay_A 635 KISANSVYGFTGATV-GKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAM 713 (919)
T ss_dssp HHHHHHHHHHHTCSS-SSCCCHHHHHHHHHHHHHHHHHHHHHHHHHSSGGGTCSSCCEEEECBSSEEEEECSCSCHHHHH
T ss_pred ccccccccccccccc-CccCCHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCCeeEEEcCCCCHHHHH
Confidence 999999999999985 899999999999999999999999999973 2469999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHh
Q psy5921 864 EIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943 (1200)
Q Consensus 864 ~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll 943 (1200)
++|++++++||+.|+.|++||||+||+++||++||||||+.|++++ ..+++++||+|+||||||+++|++++++|+.||
T Consensus 714 ~~g~~~~~~v~~~~~~~i~le~E~vy~~~ll~~KKrYag~~~~~~~-~~~~~~~KGie~vRrD~~~~~k~~~~~~l~~ll 792 (919)
T 3iay_A 714 DLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPD-KFDKLDQKGLASVRRDSCSLVSIVMNKVLKKIL 792 (919)
T ss_dssp HHHHHHHHHHHTTSCTTCCEEEEEEEEEEEEEETTEEEEEEESSSS-SCCEEEEESSGGGCTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCEEEEEeeeehhhhhhcccceEEEEeccCC-CCceEEEEeEEEEeCCchHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999987654 347999999999999999999999999999999
Q ss_pred ccCCHHHHHHHHHHHHHHHHcCCCChhhhhHhhcccCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEEEeCCC
Q psy5921 944 ETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAP 1023 (1200)
Q Consensus 944 ~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~lr~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI~~g~~ 1023 (1200)
.++|++++++|+++++.+|++|++|+++|+|+|++++ +|+.. +|||++|+||++++ +..|++||||+|||+ | +
T Consensus 793 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~lvi~k~l~k--~Y~~~--~phv~~A~r~~~~~-~~~~~~G~rI~YVi~-g-~ 865 (919)
T 3iay_A 793 IERNVDGALAFVRETINDILHNRVDISKLIISKTLAP--NYTNP--QPHAVLAERMKRRE-GVGPNVGDRVDYVII-G-G 865 (919)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCSCGGGGCEEEECCS--CCSSC--CHHHHHHHHHHHHH-SCCCCTTSEEEEEEB-C-S
T ss_pred cCCCHHHHHHHHHHHHHHHHcCCCCHHHeEEeeeccc--CCCCC--ChHHHHHHHHHHhc-CCCCCCCCEEEEEEE-C-C
Confidence 9999999999999999999999999999999999976 89864 79999999999987 788999999999999 7 7
Q ss_pred CCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhc-CC
Q psy5921 1024 GLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLL-GT 1068 (1200)
Q Consensus 1024 ~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~-G~ 1068 (1200)
+.++.+|+++|.+++++ +++||++|||+|||+|||+|||+++ |-
T Consensus 866 ~~~~~~ra~~p~~~~~~-~~~iD~~yYi~~qi~ppl~Ri~~~i~g~ 910 (919)
T 3iay_A 866 NDKLYNRAEDPLFVLEN-NIQVDSRYYLTNQLQNPIISIVAPIIGD 910 (919)
T ss_dssp SSCGGGCEECHHHHHHT-TCCBCHHHHHHHTTHHHHHHHHHHHHCH
T ss_pred CCchhhhccCHHHHhcc-CCCCCHHHHHHhccHHHHHHHHHHhcCC
Confidence 78899999999998865 6899999999999999999999986 63
No 2
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=100.00 E-value=1.5e-118 Score=1156.13 Aligned_cols=709 Identities=24% Similarity=0.375 Sum_probs=551.1
Q ss_pred CCChhhHHHHHHHhh-c-CCCcccccccc-------cccC-CcCCcceEeeccc--CcccccccccCCcceEEEEEEEec
Q psy5921 327 DFNPDLFKSFIRKQL-E-TPKRRICDSYA-------IDAM-TPDTTGDYQMGLD--NLNEVTSHVENYYLTVLAVEIHAI 394 (1200)
Q Consensus 327 ~~n~~l~e~f~~~~~-~-~g~cwl~i~~~-------i~~~-~~~s~~~fev~~~--~~~~~~~~~~~p~LtvlSlDIeT~ 394 (1200)
+.|-...+.|+. .+ + +|+||++++.+ +..+ +..++|++++... ++.........|+|++|||||||.
T Consensus 252 E~dI~~~~Rfli-D~~~i~~~~W~~i~~~~~g~~~~~r~~~~~~s~c~~E~~~~~~~~~~~~~~~~~P~lrvlsfDIE~~ 330 (1193)
T 2gv9_A 252 EGGVDATTRFIL-DNPGFVTFGWYRLKPGRNNTLAQPRAPMAFGTSSDVEFNCTADNLAIEGGMSDLPAYKLMCFDIECK 330 (1193)
T ss_dssp STTCCHHHHHHH-HSTTCCSSEEEEECCBTTTBCCEECCGGGCSBSCSEEEEEEGGGEEECCSCCCCCCCEEEEEEEEEE
T ss_pred eccCchhheEeE-EcCCCCCcceEEEecccccceeeeccccccCCCCceEEEEEcccceEccccCCCCCceEEEEEEEEc
Confidence 788889999999 87 6 89999999985 2212 4568999986543 333222334579999999999999
Q ss_pred cCC---CCCCCCC--CCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC--------CCCeEEEEcCCHHHHHHHHH
Q psy5921 395 SRA---LLKPDPA--YDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR--------TKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 395 t~~---~l~Pdp~--~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~--------~~~~~V~~~~nEkeLL~~F~ 461 (1200)
+++ ..||+|. .|+|++||++++..+........++.++.+.. |.++ ..+..|..|.+|++||.+|+
T Consensus 331 ~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~~~~~~v~~l~~~~~-~~~f~~~~k~~~~~~~~V~~~~sE~eLL~~F~ 409 (1193)
T 2gv9_A 331 AGGEDELAFPVAGHPEDLVIQISCLLYDLSTTALEHVLLFSLGSCDL-PESHLNELAARGLPTPVVLEFDSEFEMLLAFM 409 (1193)
T ss_dssp CCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCCEEEEEEEEESCCCC-CHHHHHHHHHTTCCCCEEEEESSHHHHHHHHH
T ss_pred ccCCCCCCCCCccccCCceEEEEEEEEeccCCCcceEEEEECCCcCC-cchhhhhcccccCCCceEEecCCHHHHHHHHH
Confidence 763 2599995 69999999988754332222223555555432 2111 12467999999999999999
Q ss_pred HHHhhhCCCEEEecCcccccHHHHHHHH-HHhCCCCccccccccccc---ccccCc-cccccceeeecceEEeehHHHHH
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQELSRITEVE---KRNSSR-DEVKNTQLQMPGRIVINLWRLLR 536 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~~Ra-~~lgi~l~~~lgR~~~~~---~~~~s~-~~~~~~~~~i~GRlvlDl~r~~r 536 (1200)
++|+++|||||+|||+.+||||||.+|| ..+|++.. .+||++... .+..+. .-.....+.+.||++||+|++++
T Consensus 410 ~~I~~~DPDIIvGyNi~~FDlpyL~~Ra~~~~gl~l~-~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~GRv~lDl~~~~~ 488 (1193)
T 2gv9_A 410 TLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLD-GYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIIT 488 (1193)
T ss_dssp HHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCCT-TTSSBSSSCCEEECC----------CEEETTBEEEEHHHHHT
T ss_pred HHHHhcCCCEEEEcCCcCccHHHHHHHHHHHcCCChH-HhcccccCCcceeeccccccccccceEEEcCeEeehHHHHHH
Confidence 9999999999999999999999999997 56788753 467664321 111110 00112467899999999999999
Q ss_pred hhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccc
Q psy5921 537 HEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 616 (1200)
Q Consensus 537 ~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~ 616 (1200)
+.+++.||+|++||+++||++++++++.+|.+||.++. ..+.++++||++|+.++++|+.++.-+-...++|+++|++|
T Consensus 489 ~~~kl~sYsL~~Va~~~Lg~~K~dv~~~eI~~~~~~~~-~~r~~L~~Ycl~Da~lt~~L~~kl~~~lel~elarl~gi~~ 567 (1193)
T 2gv9_A 489 DKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGP-AQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINI 567 (1193)
T ss_dssp TTCCCSCCCHHHHHHHTSCCCCCCCCTTTHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCG
T ss_pred HHhccCCCCHHHHHHHHhccCCCCCCHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence 99999999999999999999999999999999999763 34678999999999999999999733334579999999999
Q ss_pred hhhccCcchhhhhhhhhhccccccccccCCChhhh---------------------------------------------
Q psy5921 617 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR--------------------------------------------- 651 (1200)
Q Consensus 617 ~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~--------------------------------------------- 651 (1200)
++++++|+|+|+|++|+|+|+++|||+|++.....
T Consensus 568 ~~vl~~G~~irves~Ll~~a~~~~~ilP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 647 (1193)
T 2gv9_A 568 TRTIYDGQQIRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARET 647 (1193)
T ss_dssp GGTTSSCSTHHHHHHHHHHHHHHTEECBCCC-------------------------------------------------
T ss_pred HHHhcCccHHHHHHHHHHHHHHCCEeCCCcccccccccccccccccccccccccccccccccccccccccccccchhhhc
Confidence 99999999999999999999999999998643110
Q ss_pred cccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCc
Q psy5921 652 AHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQK 731 (1200)
Q Consensus 652 ~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~ 731 (1200)
.+....|.||+||||++|||++||++|||+|||||||++|||||||+++....... +.++ .+.
T Consensus 648 ~~~~~~Y~Gg~VleP~~Gly~~pV~vLDF~SLYPSII~a~Nlc~sTl~~~~~~~~~------------l~~~-----~dy 710 (1193)
T 2gv9_A 648 AGRHVGYQGAKVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAH------------LEAG-----KDY 710 (1193)
T ss_dssp -----------CCCCCCEEECSCEEEEEEETHHHHHHHHTTCCTTTEESCSTTSTT------------CCTT-----TTE
T ss_pred cccccccCCCEEeecCCCeeeCcEEEEeccccchHHHHHhcCCcceeccCchhhcc------------CCCc-----cce
Confidence 00112567999999999999999999999999999999999999999864221100 0010 022
Q ss_pred EeeCCCc--eEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccCCCCC
Q psy5921 732 LTISPSG--VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMP 809 (1200)
Q Consensus 732 i~~sPnG--~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~ 809 (1200)
..+.++| +.|+++++++|+||.+|++|+++|+++|+.||.. ++.++.+||++|+|+|++|||+|||+|+. +||||
T Consensus 711 ~~~~~~~~~~~fvk~~~~~gilp~lL~~ll~~Rk~~K~~mk~~--~~~~~~llD~~QlAlKi~aNS~YG~~G~~-~grlp 787 (1193)
T 2gv9_A 711 LEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQS--SPEEAVLLDKQQAAIKVVCNSVYGFTGVQ-HGLLP 787 (1193)
T ss_dssp EEEECSSSEEEEECTTTSCCHHHHHHHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHCT-TSSSC
T ss_pred eEecCCCCceeeccCccccchHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHhhcceecccccc-ccccc
Confidence 2333344 7899999999999999999999999999999976 67888999999999999999999999997 78999
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHhcc--------------------cCcCcceEEeccCCceeEecCCCCHHHHHHHHHHH
Q psy5921 810 CVEVGDSVVSKGRETLQKAIETVNN--------------------TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEI 869 (1200)
Q Consensus 810 ~~eiA~sIT~~GReiL~~a~~~ie~--------------------~~~~g~~VIYGDTDSvfV~~~~~~~~ea~~ig~ei 869 (1200)
|.++|++||+.||++|++|+++||+ ..++|++|||||||||||.+++.+.++++++|+++
T Consensus 788 c~~iA~sVT~~GR~~L~~tk~~IE~~~~~~~~l~~~f~~~~~~~~~~~~g~~VIYGDTDSvfV~~~~~~~~~~~~~g~~i 867 (1193)
T 2gv9_A 788 CLHVAATVTTIGREMLLATREYVHARWAAFEQLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTAMGDKM 867 (1193)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHSSHHHHHHHCGGGGGGBCSSCCEEEEEEECSSEEEEEEETBCSTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhhhcchhhhhhhcccccccccccccccceeeccCCceEEecCCCCHHHHHHHHHHH
Confidence 9999999999999999999999985 23579999999999999999988899999999999
Q ss_pred HHHHHcc-CCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCH
Q psy5921 870 ANVVTNN-NPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDL 948 (1200)
Q Consensus 870 ~~~Vn~~-~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~ 948 (1200)
++.||+. ++.|++||||++|+++||++||||||+.++ +++++||+|+||||||+|+|++++++|+.||.++|+
T Consensus 868 ~~~i~~~~~~~~i~LE~Ekvy~~~ll~~KKRYag~~~~------g~l~~KG~e~vRRD~~~lvk~~~~~vl~~ll~~~d~ 941 (1193)
T 2gv9_A 868 ASHISRALFLPPIKLECEKTFTKLLLIAKKKYIGVIYG------GKMLIKGVDLVRKNNCAFINRTSRALVDLLFYDDTV 941 (1193)
T ss_dssp HHHHHHHHCCTTCEEEEEEEEEEEEEEETTEEEEEETT------SCEEEESCCSCCTTSCHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHhccCCCEEEEeceeeHHHhhhccceEEEEecC------CEeEEECCeeecCchHHHHHHHHHHHHHHHHcCCCH
Confidence 9999974 789999999999999999999999999864 579999999999999999999999999999999887
Q ss_pred HHHH------------------------HHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhC
Q psy5921 949 SVVK------------------------EYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTD 1003 (1200)
Q Consensus 949 ~~v~------------------------~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d 1003 (1200)
+++. +++.+.+.+|++|++++++|+|+|++ |.+++|+++ .+|||++|+|+++++
T Consensus 942 ~~a~~~v~~~~~~e~~~~~~~~~~~~i~~~l~~~~~~l~~~~v~i~~lvitk~LsK~~~~Y~~~-~~phv~vA~rl~~~~ 1020 (1193)
T 2gv9_A 942 SGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDPERDIQDFVLTAELSRHPRAYTNK-RLAHLTVYYKLMARR 1020 (1193)
T ss_dssp HHHHHHGGGSCHHHHHHSCCCGGGHHHHHHHHHHHHHHHSSCSCCGGGCBCC----------------------------
T ss_pred HHHHHHHhhcchhhhhhccchhHHHHHHHHHHHHHHHHHcCCCCHHHHHHHhhcCCChhHhccc-CCcHHHHHHHHHHhc
Confidence 7664 46788899999999999999999999 568899874 579999999998775
Q ss_pred CCCCCCCCCeeeEEEEeCCC--------------------CCC----------------------------------ccc
Q psy5921 1004 PRAEPRVSERVPYVIVSGAP--------------------GLP----------------------------------LIK 1029 (1200)
Q Consensus 1004 ~~~~p~~GerI~YVI~~g~~--------------------~~~----------------------------------~~~ 1029 (1200)
+..|+.||||+|||+.+++ |.+ +++
T Consensus 1021 -~~~p~~GdrI~YVI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1099 (1193)
T 2gv9_A 1021 -AQVPSIKDRIPYVIVAQTREVEETVARLAALRELDAAAPGDEPAPPAALPSPAKRPRETPSHADPPGGASKPRKLLVSE 1099 (1193)
T ss_dssp -----CCTTTSCBEEBCC--------------------------------------------------------CCCSSC
T ss_pred -CCCCCCCCEEEEEEEECCCCccccccchhhhhcccccccCCcccccccccccccccccccccccccccccccccchhhh
Confidence 4678999999999998754 211 368
Q ss_pred ccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhc-CCC
Q psy5921 1030 LVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLL-GTP 1069 (1200)
Q Consensus 1030 r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~-G~d 1069 (1200)
++.+|..++++ +++||++||+++ ++.||.|+|+++ |-|
T Consensus 1100 ~aedp~yv~~~-~~~i~~~yY~~~-~~~~~~~~~~~~~~~~ 1138 (1193)
T 2gv9_A 1100 LAEDPAYAIAH-GVALNTDYYFSH-LLGAACVTFKALFGNN 1138 (1193)
T ss_dssp CEECHHHHHHT-TCCBCHHHHHHH-HHHHHHHHSGGGGTTC
T ss_pred hccCcHHHhhc-CCcccHHHHHHH-hhhHHHHHHHHhcCcc
Confidence 89999999875 899999999998 778999999985 655
No 3
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=100.00 E-value=5.1e-117 Score=1112.62 Aligned_cols=621 Identities=24% Similarity=0.351 Sum_probs=508.1
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHH
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFI 461 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~ 461 (1200)
++++++||||||.+. .+|+|..|+|++|++...+. ..++++++.. ...|..+++|++||.+|+
T Consensus 133 ~~l~ilsfDIEt~~~--~~p~~~~d~Ii~Is~~~~~~-------~~~~t~~~i~--------~~~v~~~~~E~~LL~~f~ 195 (775)
T 1qht_A 133 EELTMLAFAIATLYH--EGEEFGTGPILMISYADGSE-------ARVITWKKID--------LPYVDVVSTEKEMIKRFL 195 (775)
T ss_dssp CCCCEEEEEEEECCC--TTCCTTCSCEEEEEEECSSC-------EEEEESSCCC--------CSSEEECSCHHHHHHHHH
T ss_pred CCcEEEEEEEEEcCC--CCCCCCCCcEEEEEEEecCC-------CeeEeecccc--------ccceEEcCCHHHHHHHHH
Confidence 689999999999974 46899999999999875432 1233333211 134778999999999999
Q ss_pred HHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcC
Q psy5921 462 ENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNL 541 (1200)
Q Consensus 462 ~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L 541 (1200)
++|+++|||||+|||+.+||||||.+||..||+++. +||.+........ + ......+.||++||+|+.+++.+++
T Consensus 196 ~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~--lgR~~~~~~~~~~-g--~~~~~~i~Gr~~lDl~~~~k~~~~l 270 (775)
T 1qht_A 196 RVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFT--LGRDGSEPKIQRM-G--DRFAVEVKGRIHFDLYPVIRRTINL 270 (775)
T ss_dssp HHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCC--CSTTSCCCEEEEE-T--TEEEEECTTSEEEEHHHHHHHHSCC
T ss_pred HHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcc--cccCCCcCceeec-C--ceeeEEecCeEEEEHHHHHHHhcCc
Confidence 999999999999999999999999999999999874 8886543221100 1 1234678999999999999999999
Q ss_pred CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhcc
Q psy5921 542 QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLS 621 (1200)
Q Consensus 542 ~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~ 621 (1200)
.+|+|++||+++||.+++++++.++.+||.++. .+.++++||++||.++++|+.+ +++++.++|+++|+++.+++.
T Consensus 271 ~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~--~l~~l~~Y~~~Da~lt~~L~~~--~~~~~~~la~i~g~~~~~v~r 346 (775)
T 1qht_A 271 PTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGE--GLERVARYSMEDAKVTYELGRE--FFPMEAQLSRLIGQSLWDVSR 346 (775)
T ss_dssp SCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTC--SHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTSCHHHHTT
T ss_pred CcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCc--cHHHHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCCchhcee
Confidence 999999999999999999999999999999874 5789999999999999999975 588999999999999999988
Q ss_pred CcchhhhhhhhhhccccccccccCC-ChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCc
Q psy5921 622 RGSQFRVESIMLRLSRLNNFVAVSP-SIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLG 700 (1200)
Q Consensus 622 rGsq~rvEslLlr~a~~~~~I~p~p-s~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~ 700 (1200)
+|++.+||++|+|+|+++|||+|++ +..+....+..+.||+|++|++|+|++ |++|||+|||||||++|||||+|+++
T Consensus 347 ~~~~~~ve~~Ll~~~~~~~~i~P~~~~~~~~~~~~~~y~Gg~V~eP~~G~y~~-v~~lDF~SLYPSIi~~~nl~~~t~~~ 425 (775)
T 1qht_A 347 SSTGNLVEWFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNR 425 (775)
T ss_dssp CCHHHHHHHHHHHHHHHTTBCCCCCCCHHHHHHTTTCCCCCCBCCCCCSCEEE-EEEEECSSHHHHHHHHTTCSTTTBTC
T ss_pred cccHHHHHHHHhHHHHhCCEeCCCCCchhhhhccccccCCceEecccCCcccc-eeecchhcccHHHHHhcCCCcccccc
Confidence 8999999999999999999999864 332222225678899999999999987 99999999999999999999999974
Q ss_pred ccccCCCCCCCCCcccccccChHHHhhccCcEeeCC-CceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHH
Q psy5921 701 RVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP-SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQ 779 (1200)
Q Consensus 701 ~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sP-nG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~ 779 (1200)
... ++....| .|..|++. ++|++|++|++|+++|+++|+.||+.+ |+.++
T Consensus 426 ~~~--------------------------~~~~~~~~~~~~f~~~--~~g~lp~~l~~l~~~R~~~K~~~k~~~-~~~~~ 476 (775)
T 1qht_A 426 EGC--------------------------KEYDVAPEVGHKFCKD--FPGFIPSLLGDLLEERQKIKRKMKATV-DPLEK 476 (775)
T ss_dssp TTC--------------------------SCEEECTTTCCEEECS--SCCHHHHHHHHHHHHHHHHHHHHHTCC-CHHHH
T ss_pred ccc--------------------------cccccCCccCcccccc--cCCCchHHHHHHHHHHHHHHHHhhcCC-CHHHH
Confidence 211 1122233 67899986 899999999999999999999999854 78899
Q ss_pred HHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCH
Q psy5921 780 RVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTK 859 (1200)
Q Consensus 780 ~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~ 859 (1200)
++||.+|+|+|++|||+|||+|+. +|||||.++|++||++||++|++|++.+++ ++|++|||||||||||.+++.+.
T Consensus 477 ~~~d~~Q~A~Ki~~NS~YG~~g~~-~~r~~~~~~A~~vT~~Gr~~i~~~~~~i~~--~~g~~ViygDTDSi~v~~~~~~~ 553 (775)
T 1qht_A 477 KLLDYRQRAIKILANSFYGYYGYA-KARWYCKECAESVTAWGREYIEMVIRELEE--KFGFKVLYADTDGLHATIPGADA 553 (775)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHCT-TCSSCCHHHHHHHHHHHHHHHHHHHHHHHH--HHCCEEEEEETTEEEEECTTCCH
T ss_pred HHHHHHHHhhheeecccccccccc-ccCcCCHHHHHHHHHHHHHHHHHHHHHHHH--hcCCeEEEeeccceEEEcCCCCH
Confidence 999999999999999999999998 789999999999999999999999988765 47999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHccCCCceeeeeeceechhhccccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHH
Q psy5921 860 QEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSL 939 (1200)
Q Consensus 860 ~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL 939 (1200)
++++++|+++++.||+.+|.+++||||++|++++|++||||||+.. .+++++||+|+||||||+++|++++++|
T Consensus 554 ~~~~~~~~~~~~~i~~~~~~~~~le~e~~y~~~~l~~KKrYa~~~~------~g~l~~KG~e~vRrd~~~l~k~~~~~vl 627 (775)
T 1qht_A 554 ETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVIDE------EGKITTRGLEIVRRDWSEIAKETQARVL 627 (775)
T ss_dssp HHHHHHHHHHHHHHC------CCCEEEEEEEEEEEEETTEEEEECT------TCCCEEESCSCCCSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEeEEeeeheecccCeEEEEcc------CCeEEEEeeEEEeCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999998632 2679999999999999999999999999
Q ss_pred HHHhccCCHHHHHHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHhCCCCCCCCCCeeeEEE
Q psy5921 940 CLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVI 1018 (1200)
Q Consensus 940 ~~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~d~~~~p~~GerI~YVI 1018 (1200)
+.||.++|++++++|+++++.+|++|++|+++|+|+|++ |++++|+. .+|||++|+|++++ |..+++||||+|||
T Consensus 628 ~~ll~~~d~~~~~~~v~~~~~~l~~~~~~~~~lvi~k~lsk~~~~Y~~--~~phv~~A~rl~~~--g~~~~~GdrI~YVi 703 (775)
T 1qht_A 628 EAILKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIHEQITRDLRDYKA--TGPHVAVAKRLAAR--GVKIRPGTVISYIV 703 (775)
T ss_dssp HHHHHHCCHHHHHHHHHHTC------------CCBCCBC--------C--CHHHHHHHHHHHTT--TCCCCTTCBCCEEE
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHcCCCCHHHhhhhHHhcCCHHHcCC--CChHHHHHHHHHhc--CCCCCCCCEEEEEE
Confidence 999999999999999999999999999999999999999 67889986 37999999999877 45689999999999
Q ss_pred EeCCCCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhhh
Q psy5921 1019 VSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWY 1074 (1200)
Q Consensus 1019 ~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w~ 1074 (1200)
++|++ ++.+|+++|.++.. +++.||++|||++||+||++|||+++|+|.++|.
T Consensus 704 ~~g~~--~~~~ra~~~~~~~~-~~~~iD~~yYi~~qi~ppl~ri~~~~g~~~~~l~ 756 (775)
T 1qht_A 704 LKGSG--RIGDRAIPADEFDP-TKHRYDAEYYIENQVLPAVERILKAFGYRKEDLR 756 (775)
T ss_dssp CCC-------CSEEETTCC----------CHHHHTTHHHHSHHHHHTTTC------
T ss_pred EeCCC--ChhhcccCHHHhcc-CCCCCCHHHHHHhcCHHHHHHHHHHhCCCHHHhh
Confidence 98754 67799999988764 3579999999999999999999999999998875
No 4
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=100.00 E-value=4.5e-112 Score=1060.50 Aligned_cols=638 Identities=19% Similarity=0.268 Sum_probs=530.8
Q ss_pred hHHHHHHHhhc-CCCcccccccccccCCcCCcceEeecccCcccccc-cccCCcceEEEEEEEeccCCCCCCCCCCCcEE
Q psy5921 332 LFKSFIRKQLE-TPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTS-HVENYYLTVLAVEIHAISRALLKPDPAYDEVK 409 (1200)
Q Consensus 332 l~e~f~~~~~~-~g~cwl~i~~~i~~~~~~s~~~fev~~~~~~~~~~-~~~~p~LtvlSlDIeT~t~~~l~Pdp~~DeIi 409 (1200)
.-..|+. -+. .|..|....... . .+. . ..+++ ....|+|+++||||||..+ .+|+
T Consensus 113 ~~~Rfli-D~~i~~~~w~~~~~~~------~--~~~--~---~~~~~~~~~~p~lrilsfDIE~~~~---------g~i~ 169 (786)
T 3k59_A 113 PPERYLM-ERFITSPVWVEGDMHN------G--TIV--N---ARLKPHPDYRPPLKWVSIDIETTRH---------GELY 169 (786)
T ss_dssp HHHHHHH-HTTCSSEEEEEEEEET------T--EEE--E---EEEEECSSCCCCCCEEEEEEEECTT---------SCEE
T ss_pred hhheeeE-ecCcccceEEEEeccC------C--cee--c---ceEeeCCCCCCCCeEEEEEEEEcCC---------CCEE
Confidence 4467777 666 688897654321 1 111 1 11222 2347999999999999942 2688
Q ss_pred EEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHH
Q psy5921 410 AIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG 489 (1200)
Q Consensus 410 aIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra 489 (1200)
+|+.. ... ...|+++..++.. ....+..|..|++|++||.+|+++|+++|||||+|||+.+||||||.+||
T Consensus 170 ~I~~~--~~~-----~~~v~~l~~~~~~--~~~~~~~V~~f~~E~~lL~~f~~~i~~~dPDii~g~N~~~FD~pyL~~Ra 240 (786)
T 3k59_A 170 CIGLE--GCG-----QRIVYMLGPENGD--ASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHA 240 (786)
T ss_dssp EEEEE--ETT-----EEEEEEESSCCSC--CTTCSSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHH
T ss_pred EEEec--CCC-----CCeEEEEecCCCC--CCCCCceEEEeCCHHHHHHHHHHHHHHcCCCEEEecCCccCcHHHHHHHH
Confidence 88743 221 2458888776421 00135789999999999999999999999999999999999999999999
Q ss_pred HHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh-hhcCCCCCHHHHHHHHcCCCcCCCC----hH
Q psy5921 490 YVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH-EVNLQSYTFENIMYHVLHERIPLHS----WK 564 (1200)
Q Consensus 490 ~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~-el~L~SYsLe~Va~~vLg~rk~~~s----~~ 564 (1200)
..||++. .+||......++..........+.+.||++||+|+.+++ .+++.||+|++||+++||++|++.+ ++
T Consensus 241 ~~~~i~~--~lGR~~~~~~~~~~~~~~~~~~~~i~GRv~lDl~~~lk~~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~ 318 (786)
T 3k59_A 241 ERYRLPL--RLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMD 318 (786)
T ss_dssp HHHTCCC--CCBTTTBCCEEEECSSSTTCEEEECTTCEEEEHHHHHHHTTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHH
T ss_pred HHhCCCc--eeccCCCcccccccccCCCceeEEEcCEEEEEhHHHHHhccCCCCCCCHHHHHHHHhCCCCcccCccccHH
Confidence 9999987 488875432222111011123468999999999999996 5799999999999999999887654 47
Q ss_pred hHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhcccccccccc
Q psy5921 565 LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAV 644 (1200)
Q Consensus 565 ~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p 644 (1200)
++.++|.++ +.++++||++||.++++|+.++++++++.|+|+++|++|+++ +||+.++|++++++++++|||+|
T Consensus 319 eI~~~~~~~----~~~L~~Y~l~Da~L~~~L~~kl~ll~~~~elarl~Gi~~~~~--ggs~~~~~~lll~~~~~~~~i~P 392 (786)
T 3k59_A 319 EIDRRFAED----KPALATYNLKNCELVTQIFHKTEIMPFLLERATVNGLPVDRH--GGSVAAFGHLYFPRMHRAGYVAP 392 (786)
T ss_dssp HHHHHHHHC----HHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHCSCTTCC--CCHHHHHHHHHHHHHHHTTBCCC
T ss_pred HHHHHHhcC----HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCCHHHc--ccHHHHHHHHHHHHHHHcCeeCC
Confidence 899999876 578999999999999999999999999999999999999995 78889999999999999999997
Q ss_pred CCChhhhcccCCCCCCCeeeccCCCcccCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHH
Q psy5921 645 SPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRS 724 (1200)
Q Consensus 645 ~ps~~~~~~~~~~~~GglVleP~~G~Y~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~ 724 (1200)
++... ....+.||+||||++|||++ |++|||+|||||||++|||||+|++..... ..
T Consensus 393 ~~~~~----~~~~y~Gg~V~eP~~G~y~~-V~~lDF~SLYPSIi~~~ni~~~t~~~~~~~-~~----------------- 449 (786)
T 3k59_A 393 NLGEV----PPHASPGGYVMDSRPGLYDS-VLVLDYKSLYPSIIRTFLIDPVGLVEGMAQ-PD----------------- 449 (786)
T ss_dssp CTTSS----CCCCCCCCCBCCCCCEEESC-EEEEEETTHHHHHHHHHCCCHHHHHHHHHS-CS-----------------
T ss_pred Ccccc----ccccCCCcEEeeccCCceee-EEEEEhhhccHHHHHHhCCCccccccccCC-cc-----------------
Confidence 65322 12457799999999999986 999999999999999999999998632210 00
Q ss_pred HhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCcccccc
Q psy5921 725 LKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANF 804 (1200)
Q Consensus 725 ~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~f 804 (1200)
.++...+|+|..|++ ++|+||++|++|++.|+++|+.|++ .+|+|+|++|||+|||+|++
T Consensus 450 ----~~~~~~~~~g~~f~~---~~g~lp~~l~~l~~~R~~~K~~~~~------------~~q~AlKi~~Ns~YG~~G~~- 509 (786)
T 3k59_A 450 ----PEHSTEGFLDAWFSR---EKHCLPEIVTNIWHGRDEAKRQGNK------------PLSQALKIIMNAFYGVLGTT- 509 (786)
T ss_dssp ----TTTEEECSTTCEEES---SCCSHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHGGGST-
T ss_pred ----ccccccCCCCceEee---cCCchHHHHHHHHHHHHHHHHhcch------------HHHHhhheeeeccccccccc-
Confidence 123456789999997 6999999999999999999997742 46999999999999999998
Q ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCC-CCHHHHHHHHHHHHHHHHccC------
Q psy5921 805 SGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPG-KTKQEAFEIGKEIANVVTNNN------ 877 (1200)
Q Consensus 805 sgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~-~~~~ea~~ig~ei~~~Vn~~~------ 877 (1200)
+|||||.++|++||+.||++|+.|++++|+ +|++||||||||+||++++ .+.++|+++|+++++.||+.|
T Consensus 510 ~~~~~~~~~A~~iT~~GR~~l~~~~~~ie~---~g~~ViYGDTDSvfv~~~~~~~~~~~~~~g~~l~~~vn~~~~~~~~~ 586 (786)
T 3k59_A 510 ACRFFDPRLASSITMRGHQIMRQTKALIEA---QGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQK 586 (786)
T ss_dssp TSTTCCHHHHHHHHHHHHHHHHHHHHHHHH---TTCEEEECBSSEEEEECCSCCCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH---cCCEEEEEeccceEEEcCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 689999999999999999999999999997 8999999999999999997 789999999999999999854
Q ss_pred ---CCceeeeeeceechhhcc--------ccceeEEEEeecCCCCCCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccC
Q psy5921 878 ---PTPVKLKFEKVYQPCILQ--------TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETK 946 (1200)
Q Consensus 878 ---p~pi~LefEkvy~~~lL~--------~KKRYag~~~~~~~~~~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~ 946 (1200)
|.|++||||++|++++|+ +||||||+.++. + .+++++||+|+||||||+++|++++++|+.||.++
T Consensus 587 ~~l~~~i~Le~Ekvy~~~ll~t~rg~~~~~KKRYag~~~~~-~--~~~~~~KGle~vRrD~~~l~k~~~~~~l~~il~~~ 663 (786)
T 3k59_A 587 QRLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGLIQEG-D--KQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNE 663 (786)
T ss_dssp TTCCCCCCEEEEEEESEEEECBCTTSSSBCSSCEEEEEEET-T--EEEEEEESSGGGCTTSCHHHHHHHHHHHHHHHTTC
T ss_pred hcCCCceEEEEEEeEhhheehhccCCcccccceEEEEEecC-C--CCEEEEEeeEEEcCCccHHHHHHHHHHHHHHHcCC
Confidence 789999999999999996 699999999863 2 16899999999999999999999999999999998
Q ss_pred CHHHHHHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHHHHHHHHHHh----CCCCCCCCCCeeeEEEEeC
Q psy5921 947 DLSVVKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLT----DPRAEPRVSERVPYVIVSG 1021 (1200)
Q Consensus 947 d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v~vA~r~~~~----d~~~~p~~GerI~YVI~~g 1021 (1200)
| +++|+++++.+|++|+++ ++|+|+|+| |.+++|+. +.+|||++|+++.+. +....|++||||+|||+.+
T Consensus 664 ~---v~~~~~~~~~~l~~g~~~-~~lv~~k~l~k~~~~Y~~-~~~phv~aa~~~~~~~~~~g~~~~~~~G~rI~YVi~~~ 738 (786)
T 3k59_A 664 P---YQEYVRETIDKLMAGELD-ARLVYRKRLRRPLSEYQR-NVPPHVRAARLADEENQKRGRPLQYQNRGTIKYVWTTN 738 (786)
T ss_dssp C---CHHHHHHHHHHHHTTCCG-GGCCEEEEECSCGGGCCS-CCCHHHHHHHHHHHHHHHTTCCCCSTTSEEEEEEEETT
T ss_pred C---HHHHHHHHHHHHHcCCCC-hheEEEeeecCChHHccc-CCcHHHHHHHHHHHhhhccCCCcCCCCCCEEEEEEeCC
Confidence 8 468999999999999999 899999999 46899985 457999999987654 3334899999999999975
Q ss_pred CCCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhhhh
Q psy5921 1022 APGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYK 1075 (1200)
Q Consensus 1022 ~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w~~ 1075 (1200)
++ .|.++. +.+||++|||+|||.|+++|||.++|+|.+++..
T Consensus 739 g~---------~p~~~~---~~~iD~~yYi~~ql~p~~~~il~~~g~~~~~l~~ 780 (786)
T 3k59_A 739 GP---------EPLDYQ---RSPLDYEHYLTRQLQPVAEGILPFIEDNFATLMT 780 (786)
T ss_dssp EE---------EEGGGC---CSCBCHHHHHHHTHHHHHHTTGGGGTCCHHHHHH
T ss_pred CC---------CChhhc---cCCCcHHHHHHHhhHHHHHHHHHhhCCCHHHHcc
Confidence 32 255542 3689999999999999999999999999988763
No 5
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=100.00 E-value=2.5e-112 Score=1066.48 Aligned_cols=653 Identities=19% Similarity=0.209 Sum_probs=523.4
Q ss_pred CCcceEEEEEEEeccCCCCCCCCC--CCcEEEEEEEecCCCCCCCceEEEE-EecCC-CCC-C-----------cCC---
Q psy5921 381 NYYLTVLAVEIHAISRALLKPDPA--YDEVKAIFYYLYTCPPEEDRKVGII-LIGQE-SEL-P-----------EVR--- 441 (1200)
Q Consensus 381 ~p~LtvlSlDIeT~t~~~l~Pdp~--~DeIiaIs~~v~~d~~~d~~~~gv~-~v~~~-~~~-p-----------~~~--- 441 (1200)
.+.+++++|||||..++ .||||. .+||++|++.-..+ . . .-++ ++++. +.. + .+.
T Consensus 105 ~~~ir~~~~DIEv~~~~-~fPd~~~~~~~Ii~It~~d~~~--~-~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (903)
T 3qex_A 105 HTKIRVANFDIEVTSPD-GFPEPSQAKHPIDAITHYDSID--D-R--FYVFDLLNSPYGNVEEWSIEIAAKLQEQGGDEV 178 (903)
T ss_dssp GGGSCEEEEEEECCCTT-SSCCTTTCCSCCCEEEEEETTT--T-E--EEEEEECEETTEECCCCCHHHHHSCGGGTCCCC
T ss_pred cccccEEEEeEEeCCCC-CCCCcccCCCCEEEEEEEeCCC--C-E--EEEEEeecccccccccccccccccccccccccc
Confidence 47899999999998754 699998 78999999753221 1 1 1121 22211 000 0 110
Q ss_pred ----CCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHH-hCCCC---cccccccccccccccCc
Q psy5921 442 ----TKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV-LGLNL---NQELSRITEVEKRNSSR 513 (1200)
Q Consensus 442 ----~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~-lgi~l---~~~lgR~~~~~~~~~s~ 513 (1200)
..++.|..|++|++||.+|+++|+++|||||+|||+.+||||||.+||.. +|++. ++.+||......++. .
T Consensus 179 ~~~~~~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~gi~~~~~ls~~gR~~~~~~~~~-~ 257 (903)
T 3qex_A 179 PSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENM-Y 257 (903)
T ss_dssp CHHHHTTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHCHHHHGGGSTTSCEEEEEEEET-T
T ss_pred ccccCCCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcCCcccccccccccccccchhhh-c
Confidence 12578889999999999999999999999999999999999999999998 69753 345777643221110 0
Q ss_pred cccccceeeecceEEeehHHHHHh--hhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHH
Q psy5921 514 DEVKNTQLQMPGRIVINLWRLLRH--EVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTG 591 (1200)
Q Consensus 514 ~~~~~~~~~i~GRlvlDl~r~~r~--el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l 591 (1200)
+. ...+.+.||+++|+|+++|+ .+++.||+|++||+++||++|++++ .++.+||+.+ +.++++||++||.+
T Consensus 258 G~--~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~-~~I~~~~~~d----~~~L~~Ycl~Da~L 330 (903)
T 3qex_A 258 GS--REIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYD-GPISKLRESN----HQRYISYNIIAVYR 330 (903)
T ss_dssp EE--EEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCS-SCGGGHHHHH----HHHHHHHHHHHHHH
T ss_pred CC--ceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccH-HHHHHHHhcC----HHHHHHHHHHHHHH
Confidence 11 11478999999999999997 3589999999999999999999997 7888898754 78999999999999
Q ss_pred HHHHhhcchhhhhHHHHHHhhcccchhhccCcchhhhhhhhhhccccccccccCCChhhhcccCCCCCCCeeeccCCCcc
Q psy5921 592 IIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLY 671 (1200)
Q Consensus 592 ~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVleP~~G~Y 671 (1200)
+++|+.++++++++.++|+++|++|+++++ +...+|++|+|+|+++||++|++.. + ....+.||+|++|++|+|
T Consensus 331 t~~L~~Kl~li~~~~elArl~Gi~~~~vls--q~~v~e~LLlr~a~~~~~iiP~~~~--~--~~~~y~Gg~V~~p~~G~y 404 (903)
T 3qex_A 331 VLQIDAKRQFINLSLDMGYYAKIQIQSVFS--PIKTWDAIIFNSLKEQNKVIPQGRS--H--PVQPYPGAFVKEPIPNRY 404 (903)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTSCGGGGGC--HHHHHHHHHHHHHHTTTEECCCCCC--C--CCCCCCCCCBCCCCCEEC
T ss_pred HHHHHHHHhhHHHHHHHHHHhCCCHHHhcc--hHHHHHHHHHHHHHHCCEeccCCcc--c--ccCCCCCCEEecccCCce
Confidence 999999999999999999999999999984 3334599999999999999977542 2 245677999999999999
Q ss_pred cCCeEEeecccccHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCCh
Q psy5921 672 TDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGIL 751 (1200)
Q Consensus 672 ~~pV~vLDF~SLYPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GIL 751 (1200)
+ +|++|||+|||||||++|||||+|+++...... .+. + + .+......+++.++|||+.|++. ++|||
T Consensus 405 ~-~v~~lDf~SLYPsIi~~~ni~~~T~~~~~~~~~------~~~--~-i-~~~~~~p~~~~~~~p~g~~F~k~--~~GiL 471 (903)
T 3qex_A 405 K-YVMSFDLTSLYPSIIRQVNISPETIAGTFKVAP------LHD--Y-I-NAVAERPSDVYSCSPNGMMYYKD--RDGVV 471 (903)
T ss_dssp S-SEEEEEETTHHHHHHHHHTCCGGGEEEECCCCC------HHH--H-H-TTCSCCSCSSSEECTTSEEECCS--SCCHH
T ss_pred E-EEEEEehhhhchHHHHHhCcChhhccccccccc------hhc--c-c-ccccCCCCCceeeCCCCceEecC--CCcch
Confidence 7 599999999999999999999999987543110 000 0 0 00000012456789999999984 89999
Q ss_pred HHHHHHHHHHHHHHHHHhhhccC-----------------CH---------------------------------HHHHH
Q psy5921 752 PKMLQEILDTRLMVKQSMKEYKS-----------------NA---------------------------------ALQRV 781 (1200)
Q Consensus 752 P~iL~~Ll~~R~~vKk~mK~~~~-----------------d~---------------------------------~~~~~ 781 (1200)
|++|++|+++|+++|+.||+++. || .++++
T Consensus 472 P~iL~~Ll~~R~~~K~~mk~~~~~~~~~k~~L~~~~~~~~dp~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~~~~~~~~ 551 (903)
T 3qex_A 472 PTEITKVFNQRKEHKGYMLAAQRNGEIIKEALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVA 551 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCCCCCCCTTSCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhccccchhhhhhcccccccccCccccccccccchhhhhhhhccchhhhhhhhhhhhHHHHH
Confidence 99999999999999999987532 22 35678
Q ss_pred HHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhccc------CcCcceEEeccCCceeEecC
Q psy5921 782 LHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNT------SKWQCRVVYGDTDSMFVLAP 855 (1200)
Q Consensus 782 ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~------~~~g~~VIYGDTDSvfV~~~ 855 (1200)
||+||+|+|++|||+|||+|+.+ |||||.++|++||+.||++|+.+++.+++. .+++++|||||||||||.++
T Consensus 552 ~d~rQ~AlKi~~NS~YG~~G~~~-~r~~~~~~A~sIT~~GR~~i~~~~~~v~~~~~~~~~~~~~~~VIYGDTDSvfV~~~ 630 (903)
T 3qex_A 552 GMTAQINRKALINGLAGALGNVW-FRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEAFVLYGDTDSIYVSAD 630 (903)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSTT-STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCEEEEETTEEEEECH
T ss_pred HHHHHHHHHHHHHHHHHhhcCcc-cccCCHHHHHHHHHHhhHHHHHHHHHHHHHHHhhcCCCCCeEEEEEeCCceEEEeC
Confidence 99999999999999999999985 799999999999999999999999998862 23557999999999999998
Q ss_pred CCC-H--HHHHHHHHHHHHHHHc----------------------cCCCceeeeeeceech--------hhccccceeEE
Q psy5921 856 GKT-K--QEAFEIGKEIANVVTN----------------------NNPTPVKLKFEKVYQP--------CILQTKKRYVG 902 (1200)
Q Consensus 856 ~~~-~--~ea~~ig~ei~~~Vn~----------------------~~p~pi~LefEkvy~~--------~lL~~KKRYag 902 (1200)
+.. . +++|++|+++++.|++ .++.|++|+||+||.+ ++|++||||||
T Consensus 631 ~~~~~~~~~~f~~g~~l~~~i~~~~~~~~~~~i~~~~~el~e~~~~~~~p~~l~~E~i~~~~~gs~~~~~~l~~KKRYag 710 (903)
T 3qex_A 631 KIIDKVGESKFRDTNHWVDFLDKFARERMEPAIDRGFREMCEYMNNKQHLMFMDREAIAGPPLGSKGIGGFWTGKKRYAL 710 (903)
T ss_dssp HHHHHHCGGGCSSHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHTTCSSCCCCEEEEEEECCCTTSCCCCEEEEETTEEEE
T ss_pred CccchhhhhhhhHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHhccCCcceeeeeeeeecCcccccccchheeeccceEE
Confidence 643 1 1244555554443332 3578999999999999 99999999999
Q ss_pred EEeecCCCC--CCcEEEEeeeeecCCchHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHcCCCChhhhhHhhcccC
Q psy5921 903 YMYETADQD--KPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRG 980 (1200)
Q Consensus 903 ~~~~~~~~~--~~~~~~KGie~vRRD~~~l~k~i~~~vL~~Ll~~~d~~~v~~yl~~~~~kl~~g~v~~~dlii~K~lr~ 980 (1200)
+.|+.+++. ++++++||+|+||||||+++|+++++++++||.+++ +.+++|++++++++++ ++++||+|++++++
T Consensus 711 ~~~~~~g~~~~~~kl~~kGlE~vRrd~~~~~k~~~~~~l~~ll~~~~-~~~~~yv~~~~~~~~~--~~~~di~~~~~~~~ 787 (903)
T 3qex_A 711 NVWDMEGTRYAEPKLKIMGLETQKSSTPKAVQKALKECIRRMLQEGE-ESLQEYFKEFEKEFRQ--LNYISIASVSSANN 787 (903)
T ss_dssp EEEEETTEEEEEEEEEEESSGGGCTTSCHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHHGGG--SCGGGGCEEEECCC
T ss_pred EEeecCCcccCCCeeEEeceEEEeccchHHHHHHHHHHHHHHHhcCc-HHHHHHHHHHHHHHHc--CCHHHEEeecccCC
Confidence 999876654 589999999999999999999999999999999887 9999999999999998 67899999999987
Q ss_pred CCCCCCC-----CCchHHH---HHHHHHHhCCCC-CCCCCCeeeEEEEeCCCCCCccccc-------CChhhhhccCCCC
Q psy5921 981 QAGYKPG-----ACVPALS---LARQWVLTDPRA-EPRVSERVPYVIVSGAPGLPLIKLV-------KSPYELLQDSSLR 1044 (1200)
Q Consensus 981 ~~~Y~~~-----~~~P~v~---vA~r~~~~d~~~-~p~~GerI~YVI~~g~~~~~~~~r~-------~~P~e~~~~~~l~ 1044 (1200)
++.|+.. ++.+||. +++|++++|++. .++.||||+||++++++ ++.+++ ..|.|+..+....
T Consensus 788 l~~Y~~~~~~~~~~p~hv~ga~~~n~~~~~~~~~~~~~~Gekv~~v~lk~~~--~~~~~~i~~~~~~~~p~e~~~~~~~~ 865 (903)
T 3qex_A 788 IAKYDVGGFPGPKCPFHIRGILTYNRAIKGNIDAPQVVEGEKVYVLPLREGN--PFGDKCIAWPSGTEITDLIKDDVLHW 865 (903)
T ss_dssp TGGGEETTEECTTCCHHHHHHHHHHHHTTTCSSSCCCCTTSEEEEEEBCTTC--TTSSSEEEEETTSCCCHHHHHHHHHH
T ss_pred HHHhCCCCCCCCCCchhHHHHHHHHHHhhcccCCCCCCCCCcceEEEEeCCC--CCCCceEeccccccCcHHHhhCcccc
Confidence 8889864 3556765 446677666643 67999999999999643 222332 3488887655567
Q ss_pred CChHHHhhccchhHHHHHHhhcCCChhh
Q psy5921 1045 LNSEYYITRVIIPPLERCFLLLGTPVLP 1072 (1200)
Q Consensus 1045 iD~~YYi~kqi~ppl~Rll~~~G~d~~~ 1072 (1200)
+|++||++|||+|||+|||+++|+|.++
T Consensus 866 iD~~~~~~k~~~~pl~ri~~~~g~~~e~ 893 (903)
T 3qex_A 866 MDYTVLLEKTFIKPLEGFTSAAKLDYEK 893 (903)
T ss_dssp BCHHHHHHHHTHHHHHHHHHHHTCCSSC
T ss_pred cCHHHHHHHhchhHHHHHHHHcCCCHHH
Confidence 9999999999999999999999998753
No 6
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=100.00 E-value=1.2e-100 Score=970.36 Aligned_cols=661 Identities=16% Similarity=0.210 Sum_probs=445.4
Q ss_pred CCChhhHHHHHHHhhc-CCCcccccccc-cccCCcCCcceEeecccCc-----ccc-------cc--cccCCcceEEEEE
Q psy5921 327 DFNPDLFKSFIRKQLE-TPKRRICDSYA-IDAMTPDTTGDYQMGLDNL-----NEV-------TS--HVENYYLTVLAVE 390 (1200)
Q Consensus 327 ~~n~~l~e~f~~~~~~-~g~cwl~i~~~-i~~~~~~s~~~fev~~~~~-----~~~-------~~--~~~~p~LtvlSlD 390 (1200)
+.|=..-..|+. -++ .+.+|..+..+ .......-.+...+.+... ... .. ....|+++++|||
T Consensus 118 EadI~~~~Rfli-D~~i~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~l~ilsfD 196 (847)
T 1s5j_A 118 EAHIKYFNNYMY-DIGLIPGMPYVVKNGKLESVYLSLDEKDVEEIKKAFADSDEMTRQMAVDWLPIFETEIPKIKRVAID 196 (847)
T ss_dssp SCSSCHHHHHHH-HHTCCTTSEEEEETTEEEECCCCCCHHHHHHHHHHTTTSCHHHHHHHHHHTHHHHSCCCCCCEEEEE
T ss_pred ecCCchHhhhhe-ecCccceEEEEEecccccccccccchhhccchhhhhccchhhhcccccccchhcccCCCCceEEEEE
Confidence 445556677888 666 78899988775 2111110001000110000 000 00 1236899999999
Q ss_pred EEecc-CCCCCCCCCC--CcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC-CCCeEEEEcCCHHHHHHHHHHHHhh
Q psy5921 391 IHAIS-RALLKPDPAY--DEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR-TKPIQMHFVSNEKELFSIFIENVRQ 466 (1200)
Q Consensus 391 IeT~t-~~~l~Pdp~~--DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~-~~~~~V~~~~nEkeLL~~F~~~I~~ 466 (1200)
|||.+ +.+.||+|+. |+|++|++.. .++ .+++++++++....... ..+..|..|++|++||.+|+++|++
T Consensus 197 IEt~s~~~g~fP~~~~~~d~Ii~Is~~~-~~g-----~~~~~~~~~~~~~~~~~~i~~~~v~~~~~E~~LL~~f~~~i~~ 270 (847)
T 1s5j_A 197 IEVYTPVKGRIPDSQKAEFPIISIALAG-SDG-----LKKVLVLNRNDVNEGSVKLDGISVERFNTEYELLGRFFDILLE 270 (847)
T ss_dssp EEECCSSSSCCCCTTTCCSCEEEEEEEE-TTS-----CEEEEEECSSCCCCCCEEETTEEEEEESSHHHHHHHHHHHHTT
T ss_pred EEeCcCCCCCCCCccccCCcEEEEEEEc-cCC-----CcEEEEEeCCcccccccCCCCCeEEEeCCHHHHHHHHHHHhcc
Confidence 99954 5678999976 9999999852 222 13577777543210000 1257899999999999999999975
Q ss_pred hCCCEEEecCcccccHHHHHHHHHHhCCCCcc---cc-cccccccccccCccccccceeeecceEEeehHHHHHhh----
Q psy5921 467 WDPDILIGYEIETLSWGYLLERGYVLGLNLNQ---EL-SRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE---- 538 (1200)
Q Consensus 467 ~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~---~l-gR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~e---- 538 (1200)
+|||+|||+.+||||||.+||..+|++... .+ || ....+.||+++|+|+.++..
T Consensus 271 --~diivgyN~~~FDlPyL~~Ra~~lgi~~~~~p~~~~gr----------------~~~~i~gr~~~Dl~~~~~~~~~~~ 332 (847)
T 1s5j_A 271 --YPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDVAGK----------------DEAKYLAGLHIDLYKFFFNKAVRN 332 (847)
T ss_dssp --CSEEEESSTTTTHHHHHHHHHHTTTCCGGGCSEECCST----------------TCCEETTSEEEEHHHHHTSHHHHH
T ss_pred --CCEEEEeCCCCchHHHHHHHHHHcCCCcccCCeeecCC----------------CceEeccEEEeehHHHHhhhhhhh
Confidence 479999999999999999999999986321 11 22 12467899999999988752
Q ss_pred ----hcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhh--cchhhhhHHHHHHhh
Q psy5921 539 ----VNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE--QLDFIGRTSEMARLF 612 (1200)
Q Consensus 539 ----l~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~--kL~ii~~~~elarl~ 612 (1200)
.++.+|+|++||+++||+++.+++ .++ .. ..++++++||++||.++++|+. +..++++..+||+++
T Consensus 333 y~f~~kl~sysL~~Va~~~Lg~~K~dv~-~~i----~~---~~~~~l~~Ycl~Da~lt~~L~~~~~~~~~~~~~~la~i~ 404 (847)
T 1s5j_A 333 YAFEGKYNEYNLDAVAKALLGTSKVKVD-TLI----SF---LDVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRIS 404 (847)
T ss_dssp HTSTTCCSSCSHHHHHHHHHCCCCC--S-SCT----TT---CCHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHH
T ss_pred hccccccccccHHHHHHHHhCCCCcchh-Hhh----hh---ccHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHh
Confidence 257899999999999999888774 222 22 2488999999999999999965 455789999999999
Q ss_pred cccchhhccCcchhhhhhhhhhccccccccccCCChhhh-cc--------cCCCCCCCeeeccCCCcccCCeEEeecccc
Q psy5921 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR-AH--------MRAPESLPLILEPESRLYTDPIIVLDFQSL 683 (1200)
Q Consensus 613 Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~-~~--------~~~~~~GglVleP~~G~Y~~pV~vLDF~SL 683 (1200)
|+++.++...|.+.+||++|+++|+++||++|++..... .. ....+.||+|+||++|+|++ |++|||+||
T Consensus 405 ~lp~~~l~r~~~~~~v~slll~~~~~~~~i~P~~~~~~~~~~~~~~~~~~~~~~y~Gg~V~eP~~G~y~~-v~~lDf~SL 483 (847)
T 1s5j_A 405 RLGIEELTRTEISTWVKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFN-ITVLDFASL 483 (847)
T ss_dssp CCCHHHHTTSCHHHHHHHHHHHHHHHHTBCCCCHHHHHHTTCC--------------CCCCCCCSEEEEE-EEEEEETTH
T ss_pred CCCchhhcccchhhhhHHHHHHHHHhcCcccCCchhhhhhcccccchhccccccccCCcccCCCCCcccc-eeEeehhhh
Confidence 999999876677889999999999999999987643211 00 12457899999999999986 999999999
Q ss_pred cHHHHHHcCCCccccCcccccCCCCCCCCCcccccccChHHHhhccCcEeeCCCceEEecCCCcCCChHHHHHHHHHHHH
Q psy5921 684 YPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRL 763 (1200)
Q Consensus 684 YPSIIiayNIC~tT~l~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~d~i~~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~ 763 (1200)
|||||++|||||||+++....... +.....|++..|+.+ .++|++|.+|+.|++.|+
T Consensus 484 YPSIi~~~Nl~~~T~~~~~~~~~~----------------------~~~~~~~~~~~~~~~-~~~g~~p~~l~~l~~~R~ 540 (847)
T 1s5j_A 484 YPSIIRTWNLSYETVDIQQCKKPY----------------------EVKDETGEVLHIVCM-DRPGITAVITGLLRDFRV 540 (847)
T ss_dssp HHHHHHHTTCCTTTBSCSCCSSCC----------------------EECCSSSCCCEEBCC-SSCCHHHHHHHHHHHHHH
T ss_pred chHHHHHcCCCcceeccccccccc----------------------cccccCCCCceeEec-cCCcccHHHHHHHHHHHH
Confidence 999999999999999853110000 011224555556554 489999999999999999
Q ss_pred HHHHHhhhc-cCCHHHHHHHHHHHHhcccccccccCccccccCCCCCcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceE
Q psy5921 764 MVKQSMKEY-KSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRV 842 (1200)
Q Consensus 764 ~vKk~mK~~-~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fsgR~~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~V 842 (1200)
++|+.|++. +.|+.++++||.+|+|+|++|||+|||+|++ +|||||.++|++||+.||++|++|++++|+ +|++|
T Consensus 541 ~~kk~~~k~~~~~~~~~~~~d~~Q~AlKi~~NS~YG~~g~~-~~~~~~~~~A~~iT~~GR~~l~~t~~~ve~---~g~~V 616 (847)
T 1s5j_A 541 KIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINATYGVFGAE-TFPLYAPRVAESVTALGRYVITSTVKKARE---EGLTV 616 (847)
T ss_dssp HTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHST-TSTTCCHHHHHHHHHHHHHHHHHHHHHHHT---TTCCE
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhccccccccc-cccccCHHHHHHHHHHHHHHHHHHHHHHHh---CCcEE
Confidence 998888654 4588889999999999999999999999998 579999999999999999999999999997 89999
Q ss_pred EeccCCceeEecCCCCHHHHHHHHHHHHHHHHccCCCceeeeeeceechhhcc-ccceeEEEEeecCCCCCCcEEEEeee
Q psy5921 843 VYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQ-TKKRYVGYMYETADQDKPIYEAKGIE 921 (1200)
Q Consensus 843 IYGDTDSvfV~~~~~~~~ea~~ig~ei~~~Vn~~~p~pi~LefEkvy~~~lL~-~KKRYag~~~~~~~~~~~~~~~KGie 921 (1200)
|||||||+||.+++ .+++ ++++++|++.+ +++||||++|++++|. +||||||+.. .+++++||+|
T Consensus 617 iYGDTDSi~v~~~~--~~~~----~~~~~~v~~~~--~i~le~e~vy~~~ll~~~KKrYag~~~------~g~~~~KG~e 682 (847)
T 1s5j_A 617 LYGDTDSLFLLNPP--KNSL----ENIIKWVKTTF--NLDLEVDKTYKFVAFSGLKKNYFGVYQ------DGKVDIKGML 682 (847)
T ss_dssp EEEETTEEEEESCC--HHHH----HHHHHHHHHHS--SCCEEEEEEEEEEEEC----CEEEECS------SSCCCEESCC
T ss_pred ecCCCcceEEecCc--HHHH----HHHHHHHHhhc--CccEEecchhHhHccchhhCcEEEEec------CCeeeeeeeE
Confidence 99999999999864 2333 46677888775 6999999999998887 8999999853 2679999999
Q ss_pred eecCCchHHHHHHHHHHHHHHhccC---CHHH----HHHHHHHHHHHHHcCCCChhhhhHhhcc-cCCCCCCCCCCchHH
Q psy5921 922 TVRRDGCPAVSKILKKSLCLLFETK---DLSV----VKEYVEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPAL 993 (1200)
Q Consensus 922 ~vRRD~~~l~k~i~~~vL~~Ll~~~---d~~~----v~~yl~~~~~kl~~g~v~~~dlii~K~l-r~~~~Y~~~~~~P~v 993 (1200)
+||||||+++|++++++|+.||.+. |+++ +++++++.+.+|++|++++++|+|+|++ |++++|+.. .+|||
T Consensus 683 ~vRrd~~~l~k~~~~~~l~~ll~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~l~~~k~l~k~~~~Y~~~-~~~hv 761 (847)
T 1s5j_A 683 VKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKGYNLDELAFKVMLSKPLDAYKKN-TPQHV 761 (847)
T ss_dssp C--------CCSHHHHHHHHHHTTCCSCCTTHHHHHHHHHHHHHHCTTC-------------------------------
T ss_pred EeeCCcHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHcCCCCHHHEEEEEEeccChhHhccC-CCHHH
Confidence 9999999999999999999999754 4443 5566777777888999999999999999 568899754 46899
Q ss_pred HHHHHHHHhCCCCCCCCCCeeeEEEEeCCCCCCcccccCChhhhhccCCCCCChHHHhhccchhHHHHHHhhcCCChhhh
Q psy5921 994 SLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPW 1073 (1200)
Q Consensus 994 ~vA~r~~~~d~~~~p~~GerI~YVI~~g~~~~~~~~r~~~P~e~~~~~~l~iD~~YYi~kqi~ppl~Rll~~~G~d~~~w 1073 (1200)
.+|+++++. |..|+.||||+|||++++++.. |.+... ...||++||+++ |.|++++|+++||++.++|
T Consensus 762 ~~A~~~~~~--g~~~~~GdrI~Yvi~~~~~g~~-------~~~~~~--~~~iD~~~Yl~~-l~~~~~~il~~~g~~~~~i 829 (847)
T 1s5j_A 762 KAALQLRPF--GVNVLPRDIIYYVKVRSKDGVK-------PVQLAK--VTEIDAEKYLEA-LRSTFEQILRAFGVSWDEI 829 (847)
T ss_dssp ---------------------------------------------------CCSSTTHHH-HHTTSTTHHHHHSCCCCCC
T ss_pred HHHHHHHhc--CCCCCCCCEEEEEEEeCCCCCC-------hhhhcc--ccCCCHHHHHHh-hhhHHHHHHHHhCCCHHHh
Confidence 999998764 5788999999999998776543 333322 247999999997 9999999999999998887
Q ss_pred hh
Q psy5921 1074 YK 1075 (1200)
Q Consensus 1074 ~~ 1075 (1200)
..
T Consensus 830 ~~ 831 (847)
T 1s5j_A 830 AA 831 (847)
T ss_dssp --
T ss_pred cC
Confidence 63
No 7
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=100.00 E-value=2.4e-35 Score=344.92 Aligned_cols=250 Identities=16% Similarity=0.179 Sum_probs=192.0
Q ss_pred CCcceEEEEEEEeccCCCCCCCCCC--CcEEEEEEEecCCCCCCCceEEEEEecCC-CCC-Cc---------CC------
Q psy5921 381 NYYLTVLAVEIHAISRALLKPDPAY--DEVKAIFYYLYTCPPEEDRKVGIILIGQE-SEL-PE---------VR------ 441 (1200)
Q Consensus 381 ~p~LtvlSlDIeT~t~~~l~Pdp~~--DeIiaIs~~v~~d~~~d~~~~gv~~v~~~-~~~-p~---------~~------ 441 (1200)
.|++++|||||||.+ +.||+|+. |+|++|++....+.. ...+.+++.+ +.. |. .+
T Consensus 103 ~p~l~vlsfDIEt~~--~~fP~~~~~~d~Ii~Is~~~~~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~~~ 176 (388)
T 1noy_A 103 RKFVRVANCDIEVTG--DKFPDPMKAEYEIDAITHYDSIDDR----FYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVP 176 (388)
T ss_dssp GGGCCEEEEEEEECC--SSCCCTTTCCSCEEEEEEEETTTTE----EEEEEECCCSSCCCCCCCHHHHHSCGGGTCCCCC
T ss_pred CCCeEEEEEEEEeCC--CCCCCCCCCCCeEEEEEEEEecCCe----EEEEEEeeccCCCCCccccccccccccccccccc
Confidence 589999999999997 56999986 599999987654321 0011123221 111 10 00
Q ss_pred ---CCCeEEEEcCCHHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHH-hCC---CCcccccccccccc-cccCc
Q psy5921 442 ---TKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV-LGL---NLNQELSRITEVEK-RNSSR 513 (1200)
Q Consensus 442 ---~~~~~V~~~~nEkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~-lgi---~l~~~lgR~~~~~~-~~~s~ 513 (1200)
..+..|..+++|++||.+|+++|+++|||||+|||+.+||||||.+||.. +|+ +.++.+||...... ..++
T Consensus 177 ~~~~~~v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l~~~~s~~~r~~~~~~~~~~g- 255 (388)
T 1noy_A 177 QEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYG- 255 (388)
T ss_dssp HHHHTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHHHGGGSTTSCEEEEECCGGGC-
T ss_pred cccCCCeEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCccccccCcccccccccChhhhC-
Confidence 01467789999999999999999999999999999999999999999998 895 45566776543211 1111
Q ss_pred cccccceeeecceEEeehHHHHHh-hhc-CCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHH
Q psy5921 514 DEVKNTQLQMPGRIVINLWRLLRH-EVN-LQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTG 591 (1200)
Q Consensus 514 ~~~~~~~~~i~GRlvlDl~r~~r~-el~-L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l 591 (1200)
.+ ....++||++||+|+.+++ +++ +.||+|++||+++||++|.+++ +++.+||+. .+.++++||++||.+
T Consensus 256 -~~--~~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~-~~i~~~~~~----~~~~l~~Y~~~D~~l 327 (388)
T 1noy_A 256 -SK--EIYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYD-GPINKLRET----NHQRYISYNIIDVES 327 (388)
T ss_dssp -SC--EEEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCS-SCGGGHHHH----HHHHHHHHHHHHHHH
T ss_pred -Cc--ceEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcH-HHHHHHHHh----CHHHHHHHHHHHHHH
Confidence 11 1278999999999999999 687 9999999999999999888875 888899983 378999999999999
Q ss_pred HHHHhhcchhhhhHHHHHHhhcccchhhccCcchhh-hhhhhhhccccccccccCCCh
Q psy5921 592 IIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFR-VESIMLRLSRLNNFVAVSPSI 648 (1200)
Q Consensus 592 ~l~Ll~kL~ii~~~~elarl~Gi~~~~vl~rGsq~r-vEslLlr~a~~~~~I~p~ps~ 648 (1200)
+++|+.++++++++.|||+++|++|++++ | |.+ +|++|||+|+++|||+|++..
T Consensus 328 ~~~L~~kl~~l~~~~ela~i~g~~~~~vl--~-q~~~~~~lll~~~~~~~~i~P~~~~ 382 (388)
T 1noy_A 328 VQAIDKIRGFIDLVLSMSYYAKMPFSGVM--S-PIKTWDAIIFNSLKGEHKVIPQQGS 382 (388)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHTCCGGGGG--C-HHHHHHHHHHHHTTCC---------
T ss_pred HHHHHHHHChHHHHHHHhCccCCCHHHhC--c-cHHHHHHHHHHHHHhCCEEcccCCc
Confidence 99999999999999999999999999998 4 454 477999999999999988654
No 8
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=99.96 E-value=8.4e-30 Score=310.79 Aligned_cols=416 Identities=14% Similarity=0.104 Sum_probs=243.2
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENV 464 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I 464 (1200)
+++++|+||.+ |+..+.|++|++....... .... ..+ |.+|++.+
T Consensus 7 ~i~~~D~Et~~------d~~~~~~~~i~~~~~~~~~-----------------------~~~~--~~~----l~~fi~~~ 51 (575)
T 2py5_A 7 KMYSCAFETTT------KVEDCRVWAYGYMNIEDHS-----------------------EYKI--GNS----LDEFMAWV 51 (575)
T ss_dssp CEEEEEEEECC------BTTBCCEEEEEEEESSCTT-----------------------CEEE--ESC----HHHHHHHH
T ss_pred eEEEEEEEeec------CCCCCceEEEEEEeCCceE-----------------------EEEe--chh----HHHHHHHH
Confidence 58999999974 5667789999975321110 0001 111 67888999
Q ss_pred hhhCCCEEEecCcccccHHHHHHHHHHhCCCC-------c--ccccccccccccccCccccccceeeecc--eEEeehHH
Q psy5921 465 RQWDPDILIGYEIETLSWGYLLERGYVLGLNL-------N--QELSRITEVEKRNSSRDEVKNTQLQMPG--RIVINLWR 533 (1200)
Q Consensus 465 ~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l-------~--~~lgR~~~~~~~~~s~~~~~~~~~~i~G--RlvlDl~r 533 (1200)
..+||||+ +||+ +||+.+|+.|+..+|+.. . ..++|....-.+. ......| ++++|++.
T Consensus 52 ~~~~~~i~-~hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~--------i~~~~~~k~~~~i~~~D 121 (575)
T 2py5_A 52 LKVQADLY-FHNL-KFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMID--------ICLGYKGKRKIHTVIYD 121 (575)
T ss_dssp HHHCCEEE-ETTH-HHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEE--------EEEEEETTEEEEEEEEE
T ss_pred HHcCCEEE-EECh-hhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEE--------EEEecCCCceEEEEEEE
Confidence 99999955 5999 999999999999986321 1 0144432211000 0001112 25566655
Q ss_pred HHHhhhcCCCCCHHHHHHHHcCC-CcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcchhhhhHHHHHHhh
Q psy5921 534 LLRHEVNLQSYTFENIMYHVLHE-RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLF 612 (1200)
Q Consensus 534 ~~r~el~L~SYsLe~Va~~vLg~-rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL~ii~~~~elarl~ 612 (1200)
.++ +.+++|+++|+.+..+ .+..+++..+.. .+...+..++.||++||.++.+++.+. +....+...++
T Consensus 122 s~~----~~~~SL~~~a~~f~~~~~K~~~py~~~~~----~~~~~~~~~~~Y~~~Dv~ll~~i~~~~--f~~~~~~~Tis 191 (575)
T 2py5_A 122 SLK----KLPFPVKKIAKDFKLTVLKGDIDYHKERP----VGYKITPEEYAYIKNDIQIIAEALLIQ--FKQGLDRMTAG 191 (575)
T ss_dssp HHH----HSCSCHHHHHHHTTCCCCSSCCCTTSCCC----TTCCCCHHHHHHHHHHHHHHHHHHHHH--HHTTCCSSSHH
T ss_pred hHh----hhhhhHHHHHHHhCCcccCCccCccccCc----ccchhhHHHHHHHHHHHHHHHHHHHHH--HHhhhhhcccc
Confidence 443 3468999999988653 344555433321 111235678999999999999988754 22222223333
Q ss_pred cccchhhccCcchhhhhhhhhhccccccccccCCChhhhcccCCCCCCCeee-ccC--CCcccCCeEEeecccccHHHHH
Q psy5921 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLIL-EPE--SRLYTDPIIVLDFQSLYPSVII 689 (1200)
Q Consensus 613 Gi~~~~vl~rGsq~rvEslLlr~a~~~~~I~p~ps~~~~~~~~~~~~GglVl-eP~--~G~Y~~pV~vLDF~SLYPSIIi 689 (1200)
|+++.... +.+ ..+.-+..+|.++.......+..+.||.|+ .|. .|+++ +|+++||+|||||+|.
T Consensus 192 sla~~~f~--------~~~---~~~~~~~~~p~~~~~~~~~ir~~y~GGr~~~~p~y~~~~~~-~i~~~D~~SLYPs~m~ 259 (575)
T 2py5_A 192 SDSLKGFK--------DII---TTKKFKKVFPTLSLGLDKEVRYAYRGGFTWLNDRFKEKEIG-EGMVFDVNSLYPAQMY 259 (575)
T ss_dssp HHHHHHHH--------HHH---CHHHHHHHSCCCCHHHHHHHHTTCCCCCEEECGGGBTCEEC-SEEEEEETTHHHHHHH
T ss_pred cHHHHHHH--------hHh---hhccchhhcccCCchHHHHHHHcCCCccccccccccccCCC-ceEEEecCCchHHHHc
Confidence 33333211 101 011111223334332111234567799997 465 56776 4999999999999999
Q ss_pred H--cCCCccccCccc-ccCCCCCC----------------------------------CCCcc--cccccCh---HHHhh
Q psy5921 690 A--YNYCFSTCLGRV-EHLGVSDS----------------------------------FPFGC--IDLNVSI---RSLKK 727 (1200)
Q Consensus 690 a--yNIC~tT~l~~~-~~~~~~~~----------------------------------~~~g~--~~~~~~~---~~~~~ 727 (1200)
. +++..-+..... ..+. .++ +..|. .....+. ++...
T Consensus 260 ~~~~P~g~p~~~~~~~~~~~-~~~~~~g~v~~~v~~p~~~~P~lpp~~~~~~~~~~li~~~~~~~~g~~~t~vd~eL~~a 338 (575)
T 2py5_A 260 SRLLPYGEPIVFEGKYVWDE-DYPLHIQHIRCEFELKEGYIPTIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKE 338 (575)
T ss_dssp HSCEEEEEEEEEESSCCCCT-TSCEEEEEEEEEEEECTTCCCCCCC-------CCSCCSBCTTSCEEEEEEHHHHHHHHH
T ss_pred CCCCCCCCceeccccccccc-CCccceEEEEEEEeCCcccCCccccccccccCCCccccCCCcccceEEEecccHHHHhc
Confidence 8 544433332110 0000 000 00000 0000111 22211
Q ss_pred ccCcEe--eCCCceEEecCCCcCCChHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHhcccccccccCccccccC
Q psy5921 728 LQQKLT--ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFS 805 (1200)
Q Consensus 728 l~d~i~--~sPnG~~Fvk~~~r~GILP~iL~~Ll~~R~~vKk~mK~~~~d~~~~~~ld~rQ~ALKllaNS~YGy~ga~fs 805 (1200)
..+.. .-..|+.|.+ ..|+++..+..+++.|.+.| + ..| ++.|+++||+||.+|.+..
T Consensus 339 -~~g~ki~~i~~~~~f~~---~~~~f~~~i~~l~~~k~~~~---------~------~~~-~~~Kl~lNS~YGk~g~~~~ 398 (575)
T 2py5_A 339 -HYDLYNVEYISGLKFKA---TTGLFKDFIDKWTYIKTTSE---------G------AIK-QLAKLMLNSLYGKFASNPD 398 (575)
T ss_dssp -HEEEEEEEEEEEEEEEE---ESCTTHHHHHHHHHHHHHCC---------H------HHH-HHHHHHHHSSHHHHTCCSB
T ss_pred -cCCcEEEEEEEEEEEcc---CCCchHHHHHHHHHHhhhCc---------H------HHH-HHHHHHHHhHhhhhccCcc
Confidence 11111 1124556655 57999999999999987532 1 123 4679999999999998611
Q ss_pred -------------CCC----------CcHHHHHHHHHHHHHHHHHHHHHhcccCcCcceEEeccCCceeEecCCCCHHHH
Q psy5921 806 -------------GRM----------PCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862 (1200)
Q Consensus 806 -------------gR~----------~~~eiA~sIT~~GReiL~~a~~~ie~~~~~g~~VIYGDTDSvfV~~~~~~~~ea 862 (1200)
.+| .+..+|++||+.||.+|..+++.+ |.+|+||||||+|+..... ++.
T Consensus 399 ~~~~~~~~~~~~~~~f~~~e~~~~~p~~v~ia~~iTa~aR~~m~~~~~~~------~~~v~Y~DTDSi~~~~~~~--~~~ 470 (575)
T 2py5_A 399 VTGKVPYLKENGALGFRLGEEETKDPVYTPMGVFITAWARYTTITAAQAC------YDRIIYCDTDSIHLTGTEI--PDV 470 (575)
T ss_dssp CCBEEEEECTTSSEEEEECCCCBCCCCCHHHHHHHHHHHHHHHHHHHHHT------TTTEEEEETTEEEEESSSC--CGG
T ss_pred ccceEEEecccceeeeecCcccccCcchhhHHHHHHHHHHHHHHHHHHHc------CCcEEEecCCcceeccccc--hhh
Confidence 011 135699999999999998877644 7899999999999995321 111
Q ss_pred HHHHHHHHHHHHccCCCce-eeeeeceechhhccccceeEEEEe
Q psy5921 863 FEIGKEIANVVTNNNPTPV-KLKFEKVYQPCILQTKKRYVGYMY 905 (1200)
Q Consensus 863 ~~ig~ei~~~Vn~~~p~pi-~LefEkvy~~~lL~~KKRYag~~~ 905 (1200)
+.+.+. +..+ +++.|.++..++++++|+|++..+
T Consensus 471 ------l~~~~~---~~~lG~~~~E~~~~~~~f~~~K~Y~~~~~ 505 (575)
T 2py5_A 471 ------IKDIVD---PKKLGYWAHESTFKRAKYLRQKTYIQDIY 505 (575)
T ss_dssp ------GGGGBC---SSSTTSEEEEEEEEEEEEEETTEEEEEEE
T ss_pred ------hhhccc---ccchhchhhhhheeeEEEeeCceEeEeec
Confidence 112221 2223 577778999999999999999864
No 9
>3flo_B DNA polymerase alpha catalytic subunit A; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=98.76 E-value=2.6e-09 Score=113.54 Aligned_cols=94 Identities=21% Similarity=0.347 Sum_probs=71.8
Q ss_pred ccccccCCcccc------------cCCCC-Ccccccchh--hhHHHHHHHHHHHHHHHHHHHHHcc--cCcCCCCCc---
Q psy5921 1104 SVNCVCCNQMTQ------------NNKGV-CDACLNQTQ--LLGTCLYYKIQAWQRSQDQVNKVCT--TCVGRSTSN--- 1163 (1200)
Q Consensus 1104 ~~~C~~C~~~~~------------~~~~~-C~~C~~~~~--~~~~~~~~~~~~~e~~~~~~~~~C~--~C~~~~~~~--- 1163 (1200)
.++|+.|++.+. ..+++ |++|...+. .....|...++...++|+.+|++|+ +|+++||++
T Consensus 22 ~l~Cp~C~~~~~F~gv~~~~~~~~~~sg~~C~~C~~~~~~~~i~nQl~l~iR~~i~~YY~gwlvCdD~~C~~rTR~lsv~ 101 (206)
T 3flo_B 22 ELSCPSCDKRFPFGGIVSSNYYRVSYNGLQCKHCEQLFTPLQLTSQIEHSIRAHISLYYAGWLQCDDSTCGIVTRQVSVF 101 (206)
T ss_dssp EEECTTTCCEEEECSSSCCSSEEEETTEEEETTTCCBCCHHHHHHHHHHHHHHHHHHHHHCCEEESCTTTCCEESCCCSS
T ss_pred EEECCCCCCccCCCCcccCCCcccccccccCCCCCCcCCHHHHHHHHHHHHHHHHHHHhcCCcccCCcCCCcccceeecc
Confidence 689999987542 11233 999998654 2333444556667778889999997 899998876
Q ss_pred --cccCCCCC--ceeEeecchhhhhhHHHHHHHHHhhhc
Q psy5921 1164 --DCISLDCP--VLYRKTQITRDLDQLSYVLSLCDSHLA 1198 (1200)
Q Consensus 1164 --~C~~~dC~--v~y~~~~~~~~~~~~~~~~~l~~~~~~ 1198 (1200)
+|.+++|. |.|+++.+ .+|+||.||++|||..-|
T Consensus 102 g~rC~~p~C~G~m~~eYtek-~LYnQL~yf~~LFDv~~a 139 (206)
T 3flo_B 102 GKRCLNDGCTGVMRYKYSDK-QLYNQLLYFDSLFDCEKN 139 (206)
T ss_dssp TTBCSSTTCCCBEEESSCHH-HHHHHHHHHHHHTCHHHH
T ss_pred CCCCCCCCCCeeEeeeecHH-HHHHHHHHHHHHhCHHHH
Confidence 89999998 67888765 599999999999997654
No 10
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=98.47 E-value=3.3e-08 Score=77.90 Aligned_cols=30 Identities=20% Similarity=0.264 Sum_probs=20.8
Q ss_pred cCCcceeEEeeccCCCCCHHHHHHHHhhcC
Q psy5921 89 EGSSVVTSYIKLKCKPISRALVVEELINTD 118 (1200)
Q Consensus 89 ~~~~~~~~~~~~~~~pps~~ei~~~~~~~~ 118 (1200)
.+.++|+||+||+|+||+|||||++|+|||
T Consensus 23 ~~t~~~~~ILKPLMSPP~ReEI~atLlD~d 52 (52)
T 3abd_X 23 SFTPRTANILKPLMSPPSREEIMATLLDHD 52 (52)
T ss_dssp -----CTTEEEESSCCCCHHHHHHHC----
T ss_pred CCCCCcccccccccCCccHHHHHHHHhccC
Confidence 456788999999999999999999999986
No 11
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.21 E-value=8.8e-06 Score=88.33 Aligned_cols=183 Identities=9% Similarity=0.047 Sum_probs=115.2
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCC--------------CCCceEEEEEecCCCCCCcCC--CCCeEE
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPP--------------EEDRKVGIILIGQESELPEVR--TKPIQM 447 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~--------------~d~~~~gv~~v~~~~~~p~~~--~~~~~V 447 (1200)
-+++.||+||++ + +|..|+|+.|+++..+++. .......-..++|...++... ..+..-
T Consensus 10 ~~~v~iD~ETTG---l--~~~~~~IieIg~v~~~~~~~~~~~~~~~~~~~~~~i~~~f~~lv~P~~~i~~~~~~i~GIt~ 84 (238)
T 1y97_A 10 ETFVFLDLEATG---L--PSVEPEIAELSLFAVHRSSLENPEHDESGALVLPRVLDKLTLCMCPERPFTAKASEITGLSS 84 (238)
T ss_dssp SEEEEEEEEESS---C--GGGCCCEEEEEEEEEEHHHHTSCBC---CCCBCCSSCEEEEEECCCSSCCCHHHHHHHCCCH
T ss_pred CeEEEEEeeCCC---c--CCCCCcEEEEEEEEecccccccccccccccccccccceeeEEEECCCCcCCHHHHHHhCCCH
Confidence 478999999995 3 3678999999988655320 011112233566544332110 000000
Q ss_pred EEc-----CC-HHHHHHHHHHHHhhhC-CCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccce
Q psy5921 448 HFV-----SN-EKELFSIFIENVRQWD-PDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQ 520 (1200)
Q Consensus 448 ~~~-----~n-EkeLL~~F~~~I~~~D-PDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~ 520 (1200)
... .. +.+++..|.+++.... +++++|||+..||+++|...+..+|++..
T Consensus 85 ~~l~~~~~p~f~~~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~----------------------- 141 (238)
T 1y97_A 85 EGLARCRKAGFDGAVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP----------------------- 141 (238)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCC-----------------------
T ss_pred HHHhhcCCCccHHHHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCC-----------------------
Confidence 000 11 0356677777777654 48999999988999999999988877532
Q ss_pred eeecceEEeehHHHHHhhh----------cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHH
Q psy5921 521 LQMPGRIVINLWRLLRHEV----------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVT 590 (1200)
Q Consensus 521 ~~i~GRlvlDl~r~~r~el----------~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~ 590 (1200)
.....+|++..++... ...+|+|++++.+++|..... .+..+.||.
T Consensus 142 ---~~~~~iDt~~l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~~---------------------~H~Al~Da~ 197 (238)
T 1y97_A 142 ---RDTVCLDTLPALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSA---------------------AHSAEGDVH 197 (238)
T ss_dssp ---TTCEEEEHHHHHHHHHHHC----------CCSHHHHHHHHHSSCCC------------------------CHHHHHH
T ss_pred ---CCCEEEEHHHHHHHHHhccCccccCCCCCCCCHHHHHHHHhCCCCcc---------------------CccHHHHHH
Confidence 0123788888777654 357899999998666643210 233478999
Q ss_pred HHHHHhhcchhhhhHHHHHHhhcccchhhc
Q psy5921 591 GIIRLIEQLDFIGRTSEMARLFGIQFYEVL 620 (1200)
Q Consensus 591 l~l~Ll~kL~ii~~~~elarl~Gi~~~~vl 620 (1200)
.+++|+.++ .....++++-.+++|.++-
T Consensus 198 ~ta~l~~~l--~~~~~~~~~~~~~~~~~i~ 225 (238)
T 1y97_A 198 TLLLIFLHR--AAELLAWADEQARGWAHIE 225 (238)
T ss_dssp HHHHHHHHT--HHHHHHHHHHHCEEGGGCC
T ss_pred HHHHHHHHH--HHHHHHHHHhcCCchhhcc
Confidence 999999886 5677777777888887764
No 12
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=98.19 E-value=1.4e-05 Score=87.55 Aligned_cols=182 Identities=10% Similarity=0.036 Sum_probs=116.7
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCC----------------C-CCceEEEEEecCCCCCCcC----CC-
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPP----------------E-EDRKVGIILIGQESELPEV----RT- 442 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~----------------~-d~~~~gv~~v~~~~~~p~~----~~- 442 (1200)
+.+.||+||++ + +|.+|+|+.|++....++. . ......-.+++|...++.. ..
T Consensus 13 ~~vv~D~ETTG---l--~~~~d~IiEIgav~v~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~li~P~~~i~~~~~~i~GI 87 (242)
T 3mxm_B 13 TLIFLDLEATG---L--PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITGL 87 (242)
T ss_dssp EEEEEEEEESS---C--GGGCCCEEEEEEEEEEHHHHHTSCCCCSSSCCCCCCCSCCEEEEEECCCSSCCCHHHHHHHCC
T ss_pred eEEEEEeecCC---C--CCCCCeeEEEEEEEecCCcccccccccccccccccccchhheeEEEECCCCCCCHHHHHhcCC
Confidence 67899999995 4 3578999999987643320 0 1111223456665433221 00
Q ss_pred CCeEEEEc--CCH-HHHHHHHHHHHhhhC-CCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCcccccc
Q psy5921 443 KPIQMHFV--SNE-KELFSIFIENVRQWD-PDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKN 518 (1200)
Q Consensus 443 ~~~~V~~~--~nE-keLL~~F~~~I~~~D-PDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~ 518 (1200)
.+..+... ..- .+.+..|.+++...+ |++++|||...||+++|..-+..+|++..
T Consensus 88 t~~~l~~~g~p~~~~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~--------------------- 146 (242)
T 3mxm_B 88 SKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP--------------------- 146 (242)
T ss_dssp CHHHHHHTTCCCSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT---------------------
T ss_pred CHHHHHhcCCCchhHHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCC---------------------
Confidence 00011111 122 489999999998743 47999999878999999999998887531
Q ss_pred ceeeecceEEeehHHHHHhhh---------cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHH
Q psy5921 519 TQLQMPGRIVINLWRLLRHEV---------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRV 589 (1200)
Q Consensus 519 ~~~~i~GRlvlDl~r~~r~el---------~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv 589 (1200)
..+...+|++..+|... ...+|+|+++++.++|...... +-.+.||
T Consensus 147 ----~~~~~~iDtl~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~~---------------------H~Al~Da 201 (242)
T 3mxm_B 147 ----LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDS---------------------HTAEGDD 201 (242)
T ss_dssp ----TTTCEEEEHHHHHHHHHHHHCC------CCCSHHHHHHHHHSSCCSST---------------------TSHHHHH
T ss_pred ----ccCCeEeehHHHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCCC---------------------cChHHHH
Confidence 11334789998887533 2689999999988777543211 1246799
Q ss_pred HHHHHHhhcchhhhhHHHHHHhhcccchhh
Q psy5921 590 TGIIRLIEQLDFIGRTSEMARLFGIQFYEV 619 (1200)
Q Consensus 590 ~l~l~Ll~kL~ii~~~~elarl~Gi~~~~v 619 (1200)
..+.+|+.++ .....+.+.-.+.+|..+
T Consensus 202 ~ata~l~~~~--~~~~~~~~~~~~~~~~~~ 229 (242)
T 3mxm_B 202 LTLLSICQWK--PQALLQWVDEHARPFSTV 229 (242)
T ss_dssp HHHHHHHTSS--HHHHHHHHHHHCEEGGGC
T ss_pred HHHHHHHHHH--HHHHHHHHHhcCCchhhc
Confidence 9999998876 355566666666676654
No 13
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=98.05 E-value=4.1e-05 Score=86.64 Aligned_cols=183 Identities=10% Similarity=0.038 Sum_probs=113.0
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCC-----------------CCceEEEEEecCCCCCCcC----CC
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPE-----------------EDRKVGIILIGQESELPEV----RT 442 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~-----------------d~~~~gv~~v~~~~~~p~~----~~ 442 (1200)
-+.+.||+||++ + +|.+|+|+.|++...+++.. ......-.+++|...++.. ..
T Consensus 12 ~tfVv~DlETTG---L--~~~~d~IIEIgaV~v~~~~l~~~~~~~g~~~~~~~~~~v~~~~~~lI~P~~~I~~~a~~IhG 86 (314)
T 3u3y_B 12 QTLIFLDLEATG---L--PSSRPEVTELCLLAVHRRALENTSISQGHPPPVPRPPRVVDKLSLCIAPGKACSPGASEITG 86 (314)
T ss_dssp SEEEEEEEEESS---C--GGGCCCEEEEEEEEEEHHHHHC--CCCSSSCCCCCCCSSCEEEEEECBCSSCCCHHHHHHHS
T ss_pred CCEEEEEEECCC---C--CCCCCeEEEEEEEEEECCccccccccccccccccccceeeeeEEEEECCCCCCCHHHHHhcC
Confidence 368999999995 4 35689999999876443210 0112224456765443221 00
Q ss_pred C-CeEEEEc--CCH-HHHHHHHHHHHhhhC-CCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccc
Q psy5921 443 K-PIQMHFV--SNE-KELFSIFIENVRQWD-PDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVK 517 (1200)
Q Consensus 443 ~-~~~V~~~--~nE-keLL~~F~~~I~~~D-PDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~ 517 (1200)
. +..+.-. ..- .+++..|.+++...+ |.++||||+..||+++|..-+..+|++..
T Consensus 87 IT~e~l~~aG~P~f~~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~-------------------- 146 (314)
T 3u3y_B 87 LSKAELEVQGRQRFDDNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP-------------------- 146 (314)
T ss_dssp CCHHHHHHTTCCBSCHHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT--------------------
T ss_pred CCHHHHHhCCCCCcHHHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCC--------------------
Confidence 0 1111111 122 588999999998754 47999999878999999999988887531
Q ss_pred cceeeecceEEeehHHHHHhhh---------cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHH
Q psy5921 518 NTQLQMPGRIVINLWRLLRHEV---------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIR 588 (1200)
Q Consensus 518 ~~~~~i~GRlvlDl~r~~r~el---------~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~D 588 (1200)
..+...+|++..++... ...+|+|++++++++|...... +..+.|
T Consensus 147 -----~~~~~~iDTL~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~~a---------------------HrAl~D 200 (314)
T 3u3y_B 147 -----LDGTFCVDSIAALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDS---------------------HTAEGH 200 (314)
T ss_dssp -----TTTCEEEEHHHHHHHHHTTC-------CCCCSHHHHHHHHHSSCCSCS---------------------SSHHHH
T ss_pred -----CCCceEEeHHHHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCCCC---------------------CCHHHH
Confidence 11344779888766321 1489999999998777643211 113678
Q ss_pred HHHHHHHhhcchhhhhHHHHHHhhcccchhh
Q psy5921 589 VTGIIRLIEQLDFIGRTSEMARLFGIQFYEV 619 (1200)
Q Consensus 589 v~l~l~Ll~kL~ii~~~~elarl~Gi~~~~v 619 (1200)
|..+.+|+.++ .....+...--..+|+.+
T Consensus 201 A~ata~lf~~l--~~~~l~~~~~~~~p~~~i 229 (314)
T 3u3y_B 201 VLTLLSICQWK--PQALLQWVDEHARPFSTV 229 (314)
T ss_dssp HHHHHHHHHSS--HHHHHHHHHHHCEEGGGS
T ss_pred HHHHHHHHHHH--HHHHHHHHhhcCCCHHHc
Confidence 88888888876 233333333344455543
No 14
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.98 E-value=4e-05 Score=80.24 Aligned_cols=157 Identities=15% Similarity=0.097 Sum_probs=102.9
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEKELF 457 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEkeLL 457 (1200)
+.+++.||+||++ + +|..++|+.|+++...++.. ....-..++|....+.. ......+....+..+.+
T Consensus 11 ~~~~v~iD~ETTG---l--~~~~~~IieIg~v~~~~g~i--~~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~~v~ 83 (186)
T 2p1j_A 11 DATFVVLDFETTG---L--DPQVDEIIEIGAVKIQGGQI--VDEYHTLIKPSREISRKSSEITGITQEMLENKRSIEEVL 83 (186)
T ss_dssp --CEEEEEEEESC---S--CTTTCCEEEEEEEEEETTEE--EEEEEEECBCSSCCCHHHHHHHCCCHHHHTTCCBHHHHH
T ss_pred CCCEEEEEEECCC---C--CCCCCeEEEEEEEEEECCEE--EEEEEEEECcCCCCCHHHhhhcCCCHHHHhcCCCHHHHH
Confidence 4678999999995 4 35678999999876554321 11122346655433211 00000111235788899
Q ss_pred HHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh
Q psy5921 458 SIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 537 (1200)
Q Consensus 458 ~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~ 537 (1200)
..|.+++. .++++|||+ .||+++|...+..+|++.+ ....+|++..++.
T Consensus 84 ~~~~~~l~---~~~lv~hn~-~fD~~~L~~~~~~~g~~~~---------------------------~~~~iDt~~l~~~ 132 (186)
T 2p1j_A 84 PEFLGFLE---DSIIVAHNA-NFDYRFLRLWIKKVMGLDW---------------------------ERPYIDTLALAKS 132 (186)
T ss_dssp HHHHHHSS---SCEEEETTH-HHHHHHHHHHHHHHHCCCC---------------------------CCCEEEHHHHHHH
T ss_pred HHHHHHHC---CCEEEEECc-HHHHHHHHHHHHHcCCCCC---------------------------CCCEEeHHHHHHH
Confidence 99998885 479999999 8999999999988887532 0125788888887
Q ss_pred hhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 538 EVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 538 el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+...+|+|++++.+ +|.... + ....+.||..+++|+.++
T Consensus 133 ~~~~~~~~L~~l~~~-~gi~~~-------------~--------~H~Al~Da~~t~~l~~~l 172 (186)
T 2p1j_A 133 LLKLRSYSLDSVVEK-LGLGPF-------------R--------HHRALDDARVTAQVFLRF 172 (186)
T ss_dssp HTCCSCCSHHHHHHH-TTCCST-------------T--------CCHHHHHHHHHHHHHHHH
T ss_pred HhhcCCCCHHHHHHH-cCCCCC-------------C--------CcCHHHHHHHHHHHHHHH
Confidence 667789999999986 453321 0 123467888888887765
No 15
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=97.56 E-value=0.00076 Score=75.93 Aligned_cols=169 Identities=11% Similarity=0.025 Sum_probs=107.1
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCC--CCCcC-----CCCCeEEEEcCCHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQES--ELPEV-----RTKPIQMHFVSNEKE 455 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~--~~p~~-----~~~~~~V~~~~nEke 455 (1200)
.-+.+.||+||++-.. .+++..|+|+.|+++..+..........-.+|+|.. .++.. ......+.-..+..+
T Consensus 77 ~~~~vviD~ETTGl~~-~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~v~~ap~~~e 155 (299)
T 1zbh_A 77 YDYICIIDFEATCEEG-NPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ 155 (299)
T ss_dssp CSEEEEECCEECCCTT-CCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSBCHHH
T ss_pred CceEEEEEeecccCCC-CCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCCCCCCHHHHHHhCCCHHHHhcCCCHHH
Confidence 3477999999996321 235778999999988765321111112234567654 22211 001111223457889
Q ss_pred HHHHHHHHHhhh----CCCEEEecCcccccHH-HHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEee
Q psy5921 456 LFSIFIENVRQW----DPDILIGYEIETLSWG-YLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVIN 530 (1200)
Q Consensus 456 LL~~F~~~I~~~----DPDIIvGyNi~~FDlp-YL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlD 530 (1200)
.+..|.+++... ..++++|||+ .||+. +|..-+..+|++... ...-++|
T Consensus 156 vl~~f~~~l~~~~~~~~~~~lVahn~-~fD~~~fL~~~~~~~g~~~p~-------------------------~~~~~iD 209 (299)
T 1zbh_A 156 VLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPP-------------------------FAKKWIN 209 (299)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCG-------------------------GGSEEEE
T ss_pred HHHHHHHHHhhcccCCCCcEEEEEeC-HHHHHHHHHHHHHHcCCCCCc-------------------------ccchHHH
Confidence 999999999886 2369999999 69999 999888887775320 0123678
Q ss_pred hHHHHHhhhcCCC--CCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 531 LWRLLRHEVNLQS--YTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 531 l~r~~r~el~L~S--YsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+...++..+...+ ++|++++.+ +|..... . .+..+.||..+++|+.++
T Consensus 210 t~~l~~~~~~~~~~~~~L~~l~~~-~gi~~~g-------------~-------~H~Al~DA~ata~l~~~l 259 (299)
T 1zbh_A 210 IRKSYGNFYKVPRSQTKLTIMLEK-LGMDYDG-------------R-------PNCGLDDSKNIARIAVRM 259 (299)
T ss_dssp HHHHHHHHHTCCGGGCSHHHHHHH-TTCCCCS-------------C-------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCccHHHHHHH-cCCCCCC-------------C-------CCChHHHHHHHHHHHHHH
Confidence 8777766555555 999999886 4432210 0 012467888888888765
No 16
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.55 E-value=0.00074 Score=71.20 Aligned_cols=165 Identities=10% Similarity=0.010 Sum_probs=105.1
Q ss_pred cceEEEEEEEeccCCCCCC--CCCCCcEEEEEEEecC--CCCCCCceEEEEEecCCC--CCCcC-----CCCCeEEEEcC
Q psy5921 383 YLTVLAVEIHAISRALLKP--DPAYDEVKAIFYYLYT--CPPEEDRKVGIILIGQES--ELPEV-----RTKPIQMHFVS 451 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~P--dp~~DeIiaIs~~v~~--d~~~d~~~~gv~~v~~~~--~~p~~-----~~~~~~V~~~~ 451 (1200)
.-+.+.||+||++ +.| .+..++|+.|+++..+ ++. .....-..++|.. ..+.. ......+.-..
T Consensus 9 ~~~~vviD~ETTG---l~~~~~~~~~~Iieigav~~~~~~g~--i~~~f~~lv~P~~~~~i~~~~~~i~GIt~~~l~~~~ 83 (204)
T 1w0h_A 9 YDYICIIDFEATC---EEGNPPEFVHEIIEFPVVLLNTHTLE--IEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRAD 83 (204)
T ss_dssp SSEEEECCCEECC---CTTCCTTSCCCEEEEEEEEEETTTCS--EEEEEEEEBCCSSSCSCCHHHHHHHCCCHHHHHTSB
T ss_pred cCEEEEEEEecCC---cCCCCCCCCCcEEEEEEEEEECCCCE--EeeeeeeEECCCCCCccCHHHHHHhCCCHHHHhCCC
Confidence 3467999999996 333 2467999999988764 332 1112234567654 22211 00111122235
Q ss_pred CHHHHHHHHHHHHhhhC----CCEEEecCcccccHH-HHHHHHHHhCCCCcccccccccccccccCccccccceeeecce
Q psy5921 452 NEKELFSIFIENVRQWD----PDILIGYEIETLSWG-YLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGR 526 (1200)
Q Consensus 452 nEkeLL~~F~~~I~~~D----PDIIvGyNi~~FDlp-YL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GR 526 (1200)
...+.+..|.+++.... +.+++|||+ .||+. +|..-+..+|++... ..+
T Consensus 84 ~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~-~fD~~~~L~~~~~~~~~~~p~-------------------------~~~ 137 (204)
T 1w0h_A 84 TFPQVLKKVIDWMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPP-------------------------FAK 137 (204)
T ss_dssp CHHHHHHHHHHHHHHTTBTTTBCEEEEESS-TTTTHHHHHHHHHHHTCCCCG-------------------------GGS
T ss_pred CHHHHHHHHHHHHHhcCCCCCCcEEEEEEC-cchHHHHHHHHHHHhCCCCcc-------------------------ccc
Confidence 78899999999999863 457999999 69997 998888888876320 012
Q ss_pred EEeehHHHHHhhhcC--CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 527 IVINLWRLLRHEVNL--QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 527 lvlDl~r~~r~el~L--~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
-.+|+...++..+.. .+|+|++++.+ +|...... .+-.+.||..+++|+.++
T Consensus 138 ~~~dt~~l~~~~~~~~~~~~~L~~l~~~-~gi~~~~~--------------------~H~Al~Da~~ta~l~~~l 191 (204)
T 1w0h_A 138 KWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMDYDGR--------------------PHCGLDDSKNIARIAVRM 191 (204)
T ss_dssp EEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCCCCSC--------------------TTCHHHHHHHHHHHHHHH
T ss_pred ceEEHHHHHHHHhCCCCccchHHHHHHH-cCCCCCCC--------------------ccCcHHHHHHHHHHHHHH
Confidence 378998888876643 46999999887 44332100 011356888888877655
No 17
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.50 E-value=0.00095 Score=72.21 Aligned_cols=166 Identities=7% Similarity=-0.024 Sum_probs=105.2
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecC---CCCCCCceEEEEEecCCC--CCCcC------CCCCeEEEEc
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT---CPPEEDRKVGIILIGQES--ELPEV------RTKPIQMHFV 450 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~---d~~~d~~~~gv~~v~~~~--~~p~~------~~~~~~V~~~ 450 (1200)
...+.+.||+||++ + +|..++|+.|+++... ++........-..++|.. ..+.. ......+...
T Consensus 35 ~~~~~vviD~ETTG---l--~~~~~~IieIgav~~~~~~~g~i~~~~~f~~~v~P~~~~~i~~~~~~i~GIt~e~~v~~~ 109 (235)
T 3v9w_A 35 RGFYPVVIDVETAG---F--NAKTDALLEIAAITLKMDEQGWLMPDTTLHFHVEPFVGANLQPEALAFNGIDPNDPDRGA 109 (235)
T ss_dssp TTEEEEEEEEEESS---S--CTTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHCCCTTCGGGCC
T ss_pred cCCcEEEEEEeCCC---C--CCCCCeEEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcC
Confidence 45788999999995 4 3568999999988653 332100111233456531 11110 0000012223
Q ss_pred CCHHHHHHHHHHHHhhh------CCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeec
Q psy5921 451 SNEKELFSIFIENVRQW------DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMP 524 (1200)
Q Consensus 451 ~nEkeLL~~F~~~I~~~------DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~ 524 (1200)
....+.+..|..++..+ ...+++|||+ .||+++|...+..+|++... +.
T Consensus 110 ~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~-~fD~~~L~~~~~~~g~~~~p------------------------~~ 164 (235)
T 3v9w_A 110 VSGYEALHEIFKVVRKGIKASGCNRAIMVAHNA-NFDHSFMMAAAERASLKRNP------------------------FH 164 (235)
T ss_dssp BCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTT-HHHHHHHHHHHHHTTCCCCC------------------------EE
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCcEEEEeCh-HHHHHHHHHHHHHcCCCCCC------------------------CC
Confidence 56788999999999764 4579999998 89999998888888875210 11
Q ss_pred ceEEeehHHHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 525 GRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 525 GRlvlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
....+|++...+..+ .+++|++++..+ |..... . -..+.+.||..+++|+.++
T Consensus 165 ~~~~~Dt~~la~~~~--p~~~L~~l~~~~-gi~~~~------------~-------~~H~Al~DA~~ta~l~~~l 217 (235)
T 3v9w_A 165 PFATFDTAALAGLAL--GQTVLSKACQTA-GMDFDS------------T-------QAHSALYDTERTAVLFCEI 217 (235)
T ss_dssp EEEEEEHHHHHHHHH--SCCSHHHHHHHH-TCCCCT------------T-------TTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEhHHHHHHHh--CCCCHHHHHHHc-CCCCCC------------C-------CCcChHHHHHHHHHHHHHH
Confidence 123689999888765 468999998876 211100 0 1234567999999988876
No 18
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=97.48 E-value=0.0014 Score=68.57 Aligned_cols=166 Identities=6% Similarity=-0.033 Sum_probs=102.6
Q ss_pred cceEEEEEEEeccCCCCCCC---CCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcC-----CCCCeEEEEcCCHH
Q psy5921 383 YLTVLAVEIHAISRALLKPD---PAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEV-----RTKPIQMHFVSNEK 454 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pd---p~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~-----~~~~~~V~~~~nEk 454 (1200)
.++.+.||+||++ +.|. ...++|+.|++...+++.... ...-..++|....+.. ......+.-.....
T Consensus 8 ~~~~vviD~ETTG---l~~~~~~~~~~~Iieig~v~~~~~~~~~-~~f~~lv~P~~~i~~~~~~i~GIt~~~l~~~~~~~ 83 (194)
T 2gui_A 8 ITRQIVLDTETTG---MNQIGAHYEGHKIIEIGAVEVVNRRLTG-NNFHVYLKPDRLVDPEAFGVHGIADEFLLDKPTFA 83 (194)
T ss_dssp CCEEEEEEEEESC---CCSSSSTTTTCCEEEEEEEEEETTEECS-CCEEEECCCSSCCCHHHHHHHCCCHHHHTTSCCHH
T ss_pred cCCEEEEEeeCCC---CCCcccCCCCCEEEEEEEEEEECCeEec-cEEEEEECcCCcCCHHHHHhhCcCHHHHhCCCCHH
Confidence 3678999999995 3331 145899999988765432100 0112346665433211 00001111234677
Q ss_pred HHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHH
Q psy5921 455 ELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRL 534 (1200)
Q Consensus 455 eLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~ 534 (1200)
+.+..|.+++.. .+++|||+ .||+++|...+..+|++... +. .....+|++..
T Consensus 84 ~v~~~~~~~l~~---~~lv~hn~-~fD~~~L~~~~~~~g~~~p~-~~----------------------~~~~~iDt~~l 136 (194)
T 2gui_A 84 EVADEFMDYIRG---AELVIHNA-AFDIGFMDYEFSLLKRDIPK-TN----------------------TFCKVTDSLAV 136 (194)
T ss_dssp HHHHHHHHHHTT---SEEEETTH-HHHHHHHHHHHHHTCSCCCC-GG----------------------GTSEEEEHHHH
T ss_pred HHHHHHHHHHCC---CeEEEEch-HHhHHHHHHHHHHcCCCCcc-cc----------------------ccCceeeHHHH
Confidence 899999998853 68999998 79999999999888876310 00 01347899888
Q ss_pred HHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 535 LRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 535 ~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+..+.-.+++|++++.+ +|..... .. .+..+.||..+++|+.++
T Consensus 137 ~~~~~p~~~~~L~~l~~~-~gi~~~~-----------~~--------~H~Al~Da~~ta~l~~~l 181 (194)
T 2gui_A 137 ARKMFPGKRNSLDALCAR-YEIDNSK-----------RT--------LHGALLDAQILAEVYLAM 181 (194)
T ss_dssp HHHHSTTSCCSHHHHHHH-TTCCCTT-----------CS--------SCCHHHHHHHHHHHHHHH
T ss_pred HHHHcCCCCCCHHHHHHH-cCcCCCC-----------CC--------CCChHHHHHHHHHHHHHH
Confidence 887665457899999887 4432210 00 112367888888887665
No 19
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.33 E-value=0.0013 Score=70.66 Aligned_cols=166 Identities=10% Similarity=0.012 Sum_probs=104.2
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecC---CCCCCCceEEEEEecCC--CCCCcC----CCC-CeE-EEEc
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT---CPPEEDRKVGIILIGQE--SELPEV----RTK-PIQ-MHFV 450 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~---d~~~d~~~~gv~~v~~~--~~~p~~----~~~-~~~-V~~~ 450 (1200)
...+.+.||+||++ +. |..++|+.|+++... ++........-..|+|. ...+.. ... .-. +...
T Consensus 27 ~~~~~vviD~ETTG---l~--~~~~~IieIg~v~~~~~~~g~i~~~~~f~~lV~P~~~~~i~~~~~~ihGIt~e~~v~~~ 101 (224)
T 2f96_A 27 RGYLPVVVDVETGG---FN--SATDALLEIAATTVGMDEKGFLFPEHTYFFRIEPFEGANIEPAALEFTGIKLDHPLRMA 101 (224)
T ss_dssp TTEEEEEEEEEESS---SC--TTTBCEEEEEEEEEEECTTSCEEEEEEEEEEBCCCTTCBCCHHHHHHHTCCTTCTTCCC
T ss_pred cCCcEEEEEeeCCC---CC--CCCCeeEEEEEEEEEEcCCCcccccceEEEEECCCCCCCCCHHHHHHhCCCHHHHHhcC
Confidence 45689999999995 43 556899999988764 33210001123356663 122111 000 000 2234
Q ss_pred CCHHHHHHHHHHHHhhh------CCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeec
Q psy5921 451 SNEKELFSIFIENVRQW------DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMP 524 (1200)
Q Consensus 451 ~nEkeLL~~F~~~I~~~------DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~ 524 (1200)
....+.+..|.+++..+ +..+++|||+ .||+++|...+..+|++... +.
T Consensus 102 ~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~-~FD~~fL~~~~~~~g~~~~p------------------------~~ 156 (224)
T 2f96_A 102 VQEEAALTEIFRGIRKALKANGCKRAILVGHNS-SFDLGFLNAAVARTGIKRNP------------------------FH 156 (224)
T ss_dssp BCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTH-HHHHHHHHHHHHHHTCCCCC------------------------EE
T ss_pred CCHHHHHHHHHHHHHHHhhhcccCCCEEEEeCh-hhhHHHHHHHHHHcCCCcCC------------------------cc
Confidence 57889999999998754 4579999998 89999999998888875210 01
Q ss_pred ceEEeehHHHHHhhhcCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 525 GRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 525 GRlvlDl~r~~r~el~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
....+|++..++..+ .+++|++++.++ |..... .. .+..+.||..+++|+.++
T Consensus 157 ~~~~iDt~~l~~~~~--~~~~L~~l~~~~-gi~~~~-----------~~--------~H~Al~Da~~ta~l~~~l 209 (224)
T 2f96_A 157 PFSSFDTATLAGLAY--GQTVLAKACQAA-GMEFDN-----------RE--------AHSARYDTEKTAELFCGI 209 (224)
T ss_dssp EEEEEEHHHHHHHHH--SCCSHHHHHHHT-TCCCCT-----------TS--------CCCHHHHHHHHHHHHHHH
T ss_pred ccceeeHHHHHHHHc--CCCCHHHHHHHc-CCCcCC-----------CC--------CCChHHHHHHHHHHHHHH
Confidence 124789988888755 468999998874 432110 00 112367888888887765
No 20
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=97.18 E-value=0.00072 Score=77.81 Aligned_cols=169 Identities=11% Similarity=0.048 Sum_probs=104.4
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCC--CCCcC-----CCCCeEEEEcCCHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQES--ELPEV-----RTKPIQMHFVSNEKE 455 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~--~~p~~-----~~~~~~V~~~~nEke 455 (1200)
.-+++.||+||++-.. .+++..|+|+.|+++..+..........-.+|+|.. .++.. ......+.-..+..+
T Consensus 127 ~~~~vviD~ETTGl~~-~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~~~I~~~~t~ihGIT~e~v~~ap~~~e 205 (349)
T 1zbu_A 127 YDYICIIDFEATCEEG-NPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEINTQLSDFCISLTGITQDQVDRADTFPQ 205 (349)
T ss_dssp CSEEEECCCEECCCTT-CCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSSCSCCHHHHHHHCCCHHHHHTSEEHHH
T ss_pred CCeEEEEEEecCCCCC-cCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCCCCCCHHHHHHhCCCHHHHhCCCCHHH
Confidence 3477999999996321 235788999999988765321111111122455543 22111 000111122346788
Q ss_pred HHHHHHHHHhhhC----CCEEEecCcccccHH-HHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEee
Q psy5921 456 LFSIFIENVRQWD----PDILIGYEIETLSWG-YLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVIN 530 (1200)
Q Consensus 456 LL~~F~~~I~~~D----PDIIvGyNi~~FDlp-YL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlD 530 (1200)
.+..|.+++...+ .++++|||+ .||+. +|..-+..+|++... . ...++|
T Consensus 206 Vl~~f~~~l~~~~~~~~~~~lVaHNa-~FD~~~fL~~~~~~~g~~~p~------------------------~-~~~~iD 259 (349)
T 1zbu_A 206 VLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKYPP------------------------F-AKKWIN 259 (349)
T ss_dssp HHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCCCG------------------------G-GSEEEE
T ss_pred HHHHHHHHHhcccccCCCcEEEEECc-HhhHHHHHHHHHHHhCCCCcc------------------------c-cchHHH
Confidence 9999999998862 369999999 69999 999888887775320 0 123678
Q ss_pred hHHHHHhhhcCCC--CCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 531 LWRLLRHEVNLQS--YTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 531 l~r~~r~el~L~S--YsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+..+++..+...+ ++|++++.+ +|..... . .+..+.||..+++|+.++
T Consensus 260 t~~l~~~~~~~~~~~~~L~~l~~~-~gi~~~g------------~--------~HrAl~DA~ata~ll~~l 309 (349)
T 1zbu_A 260 IRKSYGNFYKVPRSQTKLTIMLEK-LGMDYDG------------R--------PHCGLDDSKNIARIAVRM 309 (349)
T ss_dssp HHHHHHHHHTCCGGGGSHHHHHHH-TTCCCCS------------C--------TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCCCCHHHHHHH-cCCCCCC------------C--------CCCHHHHHHHHHHHHHHH
Confidence 8777776655555 999999886 4432210 0 112467888888888765
No 21
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=96.55 E-value=0.034 Score=66.50 Aligned_cols=166 Identities=11% Similarity=0.023 Sum_probs=102.3
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecC-CCCCCCceE-EEEEecCCCCC-CcCC-----CC-CeEEE-EcCC
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT-CPPEEDRKV-GIILIGQESEL-PEVR-----TK-PIQMH-FVSN 452 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~-d~~~d~~~~-gv~~v~~~~~~-p~~~-----~~-~~~V~-~~~n 452 (1200)
..+.+.||+||++ + +|..|+|+.|+++..+ ++.. ... .-..++|.... |... .. ...+. .-..
T Consensus 8 ~~~~vv~DlETTG---l--~p~~d~IIEIgaV~vd~~g~i--i~~~f~~lVkP~~~ilp~p~a~~IhGIT~e~l~~ap~~ 80 (482)
T 2qxf_A 8 QSTFLFHDYETFG---T--HPALDRPAQFAAIRTDSEFNV--IGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN 80 (482)
T ss_dssp CCEEEEEEEEESS---S--CTTTSCEEEEEEEEECTTSCB--CSCCEEEEBCCCTTCCCCHHHHHHHCCCHHHHHHHCBC
T ss_pred CCCEEEEEEECCC---C--CCCCCeEEEEEEEEEECCCeE--EeeeeEEEECCCCCCCCCHHHHHHhCCCHHHHhcCCCC
Confidence 4578999999995 4 4567999999987655 3321 111 23456665432 1100 00 00011 0125
Q ss_pred HHHHHHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehH
Q psy5921 453 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLW 532 (1200)
Q Consensus 453 EkeLL~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~ 532 (1200)
|.+.+..|.+++.. ...+++|||+-.||+++|..-+..++++.+. + . | ..|.-.+|+.
T Consensus 81 ~~evl~~f~~~l~~-~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~~---~-----~--------w-----~~~~~~iDtl 138 (482)
T 2qxf_A 81 EAAFAARIHSLFTV-PKTCILGYNNVRFDDEVTRNIFYRNFYDPYA---W-----S--------W-----QHDNSRWDLL 138 (482)
T ss_dssp HHHHHHHHHHHHTS-TTEEEEESSTTTTHHHHHHHHHHHTTSCSSG---G-----G--------T-----GGGCEEEEHH
T ss_pred HHHHHHHHHHHHcC-CCCEEEEECCHHHHHHHHHHHHHHhCCCccc---c-----c--------c-----ccCCceeeHH
Confidence 78999999999975 3479999997789999999999888776321 0 0 0 1133456877
Q ss_pred HHHHhhh--------------cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhc
Q psy5921 533 RLLRHEV--------------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQ 598 (1200)
Q Consensus 533 r~~r~el--------------~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~k 598 (1200)
.+++..+ ...+|+|++++.++ |.... + .+-.+.||..+++|+.+
T Consensus 139 ~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~-Gi~~~-------------~--------aHrAL~DA~aTa~l~~~ 196 (482)
T 2qxf_A 139 DVMRACYALRPEGINWPENDDGLPSFRLEHLTKAN-GIEHS-------------N--------AHDAMADVYATIAMAKL 196 (482)
T ss_dssp HHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHT-TCCCC------------------------CTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCcccccCcccccCCCCCCHHHHHHHc-CCCCC-------------C--------CCCHHHHHHHHHHHHHH
Confidence 7766543 35689999998764 42210 0 11235688888888766
Q ss_pred c
Q psy5921 599 L 599 (1200)
Q Consensus 599 L 599 (1200)
+
T Consensus 197 l 197 (482)
T 2qxf_A 197 V 197 (482)
T ss_dssp H
T ss_pred H
Confidence 4
No 22
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=96.51 E-value=0.014 Score=62.74 Aligned_cols=164 Identities=11% Similarity=0.020 Sum_probs=94.3
Q ss_pred ceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCC--CCCcC-----CCCCeEEEEcCCHHHH
Q psy5921 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQES--ELPEV-----RTKPIQMHFVSNEKEL 456 (1200)
Q Consensus 384 LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~--~~p~~-----~~~~~~V~~~~nEkeL 456 (1200)
-+.+.||+||++ +.|....++|+.|+++..++...+.....-..++|.. ..+.. ......+.-.....+.
T Consensus 31 ~~~vviD~ETTG---l~~~~d~~~IieIgav~v~~~~~~i~~~f~~lV~P~~~~~i~~~~~~ltGIt~~~v~~a~~~~~v 107 (224)
T 2xri_A 31 HYFLVLDFEATC---DKPQIHPQEIIEFPILKLNGRTMEIESTFHMYVQPVVHPQLTPFCTELTGIIQAMVDGQPSLQQV 107 (224)
T ss_dssp SEEEEECCEECC---CC-CCSSCCEEEEEEEEEETTTCCEEEEEEEECCCSSSCSCCHHHHHHHCCCHHHHTTCCCHHHH
T ss_pred CeEEEEEEEcCC---CCCCCCCcceEEEEEEEEecCCcEEeeeeeeEECCCCCCcCCHHHHHHhCcCHHHHcCCCCHHHH
Confidence 478999999995 4433222499999988665432111112234566654 22211 0001112223578899
Q ss_pred HHHHHHHHhhhCCCEEEecCcc-------cccHHHHH-HHHHHhCCCCcccccccccccccccCccccccceeeecceEE
Q psy5921 457 FSIFIENVRQWDPDILIGYEIE-------TLSWGYLL-ERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIV 528 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~-------~FDlpYL~-~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlv 528 (1200)
+..|.+++... +++|||.. .||+.+|+ .-+..+|++.... -.-.
T Consensus 108 ~~~f~~~l~~~---~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~-------------------------~~~~ 159 (224)
T 2xri_A 108 LERVDEWMAKE---GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADY-------------------------FKQW 159 (224)
T ss_dssp HHHHHHHHHHT---TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGG-------------------------GSCE
T ss_pred HHHHHHHHhhc---ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCccc-------------------------ccce
Confidence 99999999863 57788875 79999855 5556677764210 0126
Q ss_pred eehHHHHHhhh-cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 529 INLWRLLRHEV-NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 529 lDl~r~~r~el-~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+|+...++... ...+++|++++..+ |.... +. ..-.+.||..+++|+.++
T Consensus 160 iD~~~~~~~~~~~~p~~~L~~l~~~~-gi~~~-------------~~-------~H~Al~DA~~ta~l~~~l 210 (224)
T 2xri_A 160 INLKKAYSFAMGCWPKNGLLDMNKGL-SLQHI-------------GR-------PHSGIDDCKNIANIMKTL 210 (224)
T ss_dssp EEHHHHHHHHHTSCCTTTHHHHHHHT-TCCCC-------------SC-------TTCHHHHHHHHHHHHHHH
T ss_pred EeHHHHHHHHhccCCCCCHHHHHHHc-CCCCC-------------CC-------CcChHHHHHHHHHHHHHH
Confidence 78543333221 23568999998753 42211 00 112367888888887765
No 23
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=94.96 E-value=0.089 Score=59.37 Aligned_cols=164 Identities=10% Similarity=0.051 Sum_probs=97.7
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCC---cEEEEEEEecC--CCCCCCceEEEEEecCCCC--CCcC-----CCCCeEEEE
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYD---EVKAIFYYLYT--CPPEEDRKVGIILIGQESE--LPEV-----RTKPIQMHF 449 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~D---eIiaIs~~v~~--d~~~d~~~~gv~~v~~~~~--~p~~-----~~~~~~V~~ 449 (1200)
+.-+.+.||+||++ +. |.+| +|+.|+++..+ ++........-.+|+|... ++.. ......+.-
T Consensus 17 ~~~~~vviD~ETTG---l~--~~~d~~~eIIEIgaV~vd~~~g~i~~~~~f~~lV~P~~~p~i~~~~~~ltGIt~e~v~~ 91 (308)
T 3cg7_A 17 PFDTLLILDFETTS---DA--ANQDYPCEVIQFAIVAYDVPNDKIREDISFNKYVKPVLNRTLTKNCVDFTGIPQRSIDT 91 (308)
T ss_dssp CCSEEEEEEEEECC---BT--TBCSCCCCEEEEEEEEEETTTTEEEEEEEEEEECBCSSBCSCCHHHHHHHCCCHHHHHT
T ss_pred CCCeEEEEEeecCC---CC--CCCCCCCCeEEEEEEEEEcCCCEEeeccceeeEECCCCCCCCCHHHHHHcCCCHHHHhc
Confidence 33468999999995 33 3455 99999988753 2211000022345676542 2211 001111223
Q ss_pred cCCHHHHHHHHHHHHhhhCCCEEEecCc-----ccccH-HHHHHHHHHhCCCCcccccccccccccccCccccccceeee
Q psy5921 450 VSNEKELFSIFIENVRQWDPDILIGYEI-----ETLSW-GYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQM 523 (1200)
Q Consensus 450 ~~nEkeLL~~F~~~I~~~DPDIIvGyNi-----~~FDl-pYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i 523 (1200)
.....+.+..|.+++.... ++|||. -.||+ .+|..-+..+|++... .
T Consensus 92 ap~~~evl~~f~~~l~~~~---lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~------------------------~ 144 (308)
T 3cg7_A 92 ADTFDVVYEQFQQWLITLG---LEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPA------------------------F 144 (308)
T ss_dssp SCBHHHHHHHHHHHHHHHC---CCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCG------------------------G
T ss_pred CCCHHHHHHHHHHHHHhCC---cCCcceEEeccCcccHHHHHHHHHHHcCCCCch------------------------h
Confidence 4578899999999999864 467776 16999 6888777777776421 0
Q ss_pred cceEEeehHHHHHhhhcC-------CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHh
Q psy5921 524 PGRIVINLWRLLRHEVNL-------QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLI 596 (1200)
Q Consensus 524 ~GRlvlDl~r~~r~el~L-------~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll 596 (1200)
-+-.+|+...++..+.. .+++|++++.++ |..... . .+..+.||..+++|+
T Consensus 145 -~~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~-gi~~~~------------~--------~HrAl~DA~ata~l~ 202 (308)
T 3cg7_A 145 -FRQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYY-DLPTIG------------R--------AHDAMDDCLNIATIL 202 (308)
T ss_dssp -GSEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHT-TCCCCS------------C--------TTCHHHHHHHHHHHH
T ss_pred -hcceeeHHHHHHHHhccccccccccCcCHHHHHHHc-CCCCCC------------C--------CcCHHHHHHHHHHHH
Confidence 01257888887765421 168899998654 332110 0 012367888888888
Q ss_pred hcc
Q psy5921 597 EQL 599 (1200)
Q Consensus 597 ~kL 599 (1200)
.++
T Consensus 203 ~~l 205 (308)
T 3cg7_A 203 QRM 205 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 765
No 24
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=94.47 E-value=0.022 Score=58.79 Aligned_cols=103 Identities=17% Similarity=0.162 Sum_probs=64.9
Q ss_pred cceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceE-EEEEecCCCCCCcC--------C-CCC---eEEEE
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKV-GIILIGQESELPEV--------R-TKP---IQMHF 449 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~-gv~~v~~~~~~p~~--------~-~~~---~~V~~ 449 (1200)
+.+.+.||+||++ + +|..|+|+.|++...+... ..... .-.+++|....|.. . ..+ ..+.-
T Consensus 4 ~~~~v~iD~ETTG---l--~~~~~~IieIg~v~~~~~~-~~~~~~~~~lv~P~~~i~~~i~~~~~~~~~itGIt~~~l~~ 77 (180)
T 2igi_A 4 ENNLIWIDLEMTG---L--DPERDRIIEIATLVTDANL-NILAEGPTIAVHQSDEQLALMDDWNVRTHTASGLVERVKAS 77 (180)
T ss_dssp GGCEEEEEEEESS---S--CTTTCCEEEEEEEEECTTC-CEEEEEEEEECCCCHHHHTTCCHHHHHHHHHTTHHHHHHHC
T ss_pred CCcEEEEEeeCCC---C--CCCCCceEEEEEEEEcCCC-cEecCCcceEECCCHHHhhcCCHHHHHHHHHcCCCHHHHhc
Confidence 4678999999995 4 4567999999988654221 11111 23356654321100 0 001 01223
Q ss_pred cCCHHHHHHHHHHHHhhhCC---CEEEecCcccccHHHHHHHHHHh
Q psy5921 450 VSNEKELFSIFIENVRQWDP---DILIGYEIETLSWGYLLERGYVL 492 (1200)
Q Consensus 450 ~~nEkeLL~~F~~~I~~~DP---DIIvGyNi~~FDlpYL~~Ra~~l 492 (1200)
..+..+.+..|.+++..+-| .+++|||. .||+++|..-+..+
T Consensus 78 ~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~-~fD~~fL~~~~~~~ 122 (180)
T 2igi_A 78 TMGDREAELATLEFLKQWVPAGKSPICGNSI-GQDRRFLFKYMPEL 122 (180)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTTSCEEESSH-HHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHHHHHHHHHHHHh
Confidence 45788999999999987533 48999997 69999998765544
No 25
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=94.15 E-value=0.035 Score=58.25 Aligned_cols=103 Identities=14% Similarity=0.077 Sum_probs=64.3
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEE-EEEecCCCC----CCc---------CCCCCeEE
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVG-IILIGQESE----LPE---------VRTKPIQM 447 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~g-v~~v~~~~~----~p~---------~~~~~~~V 447 (1200)
..-+.+.||+||++ + +|.+|+|+.|++.+.+. .......+ .++++++.. .+. |. .+..+
T Consensus 7 ~~~~~v~~D~ETTG---L--~p~~d~IiEIgaV~~d~-~~~i~~~~~~~~i~~p~~~l~~~~~~~~~ih~ltGI-t~~~l 79 (186)
T 3tr8_A 7 SDDNLIWLDLEMTG---L--DPERDRIIEIATIVTNS-HLDILAEGPAFAIHQPDKLLTAMDNWNTSHHTASGL-LERVK 79 (186)
T ss_dssp CTTCEEEEEEEESS---S--CTTTCCEEEEEEEEECT-TCCEEEECCCEECCCCHHHHTTSCHHHHHHHHHTSH-HHHHH
T ss_pred CCCcEEEEEEECCC---C--CCCCCceEEEEEEEEcC-CeEEeeeeEEEEEeCCccccccCCcccHHHHhccCC-CHHHH
Confidence 34578999999994 5 45789999999886543 21111111 233543220 000 10 00011
Q ss_pred EEcCCHHHHHHHHHHHHhhhC---CCEEEecCcccccHHHHHHHHHHh
Q psy5921 448 HFVSNEKELFSIFIENVRQWD---PDILIGYEIETLSWGYLLERGYVL 492 (1200)
Q Consensus 448 ~~~~nEkeLL~~F~~~I~~~D---PDIIvGyNi~~FDlpYL~~Ra~~l 492 (1200)
.--.++.+.+..|+++++++= -.+++|||. .||++||..-+..+
T Consensus 80 ~~~p~~~ev~~~~l~fl~~~~~~~~~~lvghn~-~FD~~FL~~~~~~~ 126 (186)
T 3tr8_A 80 NSSVDEVEAETLTLAFLEKYVSAGKSPLCGNSV-CQDRRFLSRYMPRL 126 (186)
T ss_dssp TCCCCHHHHHHHHHHHHTTTSCTTCSCEEESST-HHHHHHHHHHCHHH
T ss_pred hcCCCHHHHHHHHHHHHHHhccCCCcEEEEEcH-HHhHHHHHHHHHHc
Confidence 123589999999999997652 358999998 69999998875544
No 26
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=92.21 E-value=0.54 Score=58.79 Aligned_cols=155 Identities=13% Similarity=0.068 Sum_probs=90.3
Q ss_pred EEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHh
Q psy5921 386 VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVR 465 (1200)
Q Consensus 386 vlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~ 465 (1200)
++.||+||++ +. +..|.|.+|.+.-...+ .++.+++. .-.+.+..|..++.
T Consensus 1 ~vv~D~ETtG---l~--~~~d~i~~iqi~~~~~~-------~~~~~~p~-----------------~i~~~l~~L~~~l~ 51 (698)
T 1x9m_A 1 MIVSDIEANA---LL--ESVTKFHCGVIYDYSTA-------EYVSYRPS-----------------DFGAYLDALEAEVA 51 (698)
T ss_dssp CEEEEEEESS---CG--GGCCCEEEEEEEETTTT-------EEEEECGG-----------------GHHHHHHHHHHHHH
T ss_pred CEEEEcCCCC---cC--CCCCEEEEEEEEecCCC-------cEEEEChH-----------------HHHHHHHHHHHHHh
Confidence 4689999995 43 56789988876532111 12233221 11236777777775
Q ss_pred hhCCCEEEecCcccccHHHHHHHHHHh---CCCCcccccccccccccccCccccccceeeec-ceEEeehHHHHHhhh-c
Q psy5921 466 QWDPDILIGYEIETLSWGYLLERGYVL---GLNLNQELSRITEVEKRNSSRDEVKNTQLQMP-GRIVINLWRLLRHEV-N 540 (1200)
Q Consensus 466 ~~DPDIIvGyNi~~FDlpYL~~Ra~~l---gi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~-GRlvlDl~r~~r~el-~ 540 (1200)
.-.+++|||...||+.+|...+... |+. +. | .++|++-..+-.- .
T Consensus 52 --~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~---------------------------l~~~-~~~DTmlaayLL~p~ 101 (698)
T 1x9m_A 52 --RGGLIVFHNGHKYDVPALTKLAKLQLNREFH---------------------------LPRE-NCIDTLVLSRLIHSN 101 (698)
T ss_dssp --TTCCEEESSTTTTHHHHHHHHHHHHHCCCCC---------------------------CCGG-GEEEHHHHHHHHTTT
T ss_pred --cCCeEEEcCChHHHHHHHHHhhhhcccCCcc---------------------------CCCC-cchhHHHHHHHhCCC
Confidence 2346789998679999998765432 322 22 3 3779886655332 3
Q ss_pred CCCCCHHHHHHHHcCCCcCC---------CChHhHHH--HHhcCCc--------ccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 541 LQSYTFENIMYHVLHERIPL---------HSWKLLTC--WWEHRTH--------LYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 541 L~SYsLe~Va~~vLg~rk~~---------~s~~~L~~--~~~~~~~--------~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
..+|+|++++..+|+...+. .++.++.. .+..+.. ..-..+.+|+..||..+.+|..+|
T Consensus 102 ~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~t~~L~~~L 179 (698)
T 1x9m_A 102 LKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVVTKALLEKL 179 (698)
T ss_dssp SCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 56899999998887321110 01111100 0001100 001457899999999999988765
No 27
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=91.97 E-value=2.2 Score=52.46 Aligned_cols=154 Identities=10% Similarity=0.107 Sum_probs=93.1
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEE-ecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIIL-IGQESELPEVRTKPIQMHFVSNEKELFSIFIEN 463 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~-v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~ 463 (1200)
..++||+||++ + +|..++|+.|++++.++ ..+++ +.... . + +....+..+.+..|..+
T Consensus 27 ~~va~DtEttg---l--~~~~~~iv~I~~~~~~g-------~~~yip~~~~~-~------~--~~~~l~~~~vl~~L~~~ 85 (605)
T 2kfn_A 27 PVFAFDTETDS---L--DNISANLVGLSFAIEPG-------VAAYIPVAHDY-L------D--APDQISRERALELLKPL 85 (605)
T ss_dssp SSEEEEEEESC---S--CTTTCCEEEEEEEEETT-------EEEEEECCCCS-T------T--CCCCCCHHHHHHHHHHH
T ss_pred CeEEEEEecCC---C--CcccCceEEEEEEEcCC-------cEEEEeccccc-c------c--cccccCHHHHHHHHHHH
Confidence 45889999995 3 35578899999886222 11222 11100 0 0 00011245677778777
Q ss_pred HhhhCCC-EEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh-cC
Q psy5921 464 VRQWDPD-ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV-NL 541 (1200)
Q Consensus 464 I~~~DPD-IIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el-~L 541 (1200)
+. ||+ +.+|||. .||+.+|.. +|+. +.| .++|++...+-.- ..
T Consensus 86 L~--d~~i~kV~hna-k~D~~~L~~----~Gi~---------------------------l~~-~~~DT~laayLL~p~~ 130 (605)
T 2kfn_A 86 LE--DEKALKVGQNL-KYDRGILAN----YGIE---------------------------LRG-IAFDTMLESYILNSVA 130 (605)
T ss_dssp HT--CTTSCEEESSH-HHHHHHHHT----TTCC---------------------------CCC-EEEEHHHHHHHHCTTS
T ss_pred Hc--CCCCeEEEECc-HHHHHHHHH----CCCC---------------------------CCC-ccccHHHHHHHhCCCC
Confidence 75 565 5799998 699998864 3443 224 4789876654332 34
Q ss_pred CCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCc------ccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 542 QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTH------LYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 542 ~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~------~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+|+|++++..+|+.... ++.++ +..+.. ........|+..|+..+++|..+|
T Consensus 131 ~~~~L~~La~~~Lg~~~i--~~~~~---~gKg~~~~~~~~~~le~~~~yAa~Da~~~~~L~~~L 189 (605)
T 2kfn_A 131 GRHDMDSLAERWLKHKTI--TFEEI---AGKGKNQLTFNQIALEEAGRYAAEDADVTLQLHLKM 189 (605)
T ss_dssp SCCSHHHHHHHHSCCCCC--CHHHH---HCSSTTCCCGGGSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHhcCCCcc--cHHHH---hCCCcccCCcccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 689999999999875432 22222 111100 012457899999999999987765
No 28
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=90.54 E-value=0.14 Score=53.50 Aligned_cols=104 Identities=11% Similarity=0.019 Sum_probs=63.6
Q ss_pred CcceEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceE-EEEEecCCCCC-------CcC----CC-CCeEEE
Q psy5921 382 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKV-GIILIGQESEL-------PEV----RT-KPIQMH 448 (1200)
Q Consensus 382 p~LtvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~-gv~~v~~~~~~-------p~~----~~-~~~~V~ 448 (1200)
.+.+.+.||+||++ + +|..|+|+.|++... ++....... .-++++|.... +.. .. ....+.
T Consensus 7 ~~~~~vviD~ETTG---l--~p~~d~IieIgav~~-~~~~~~~~~~~~~~v~p~~~i~~~~~~~~~~~~~itGIt~~~l~ 80 (194)
T 2gbz_A 7 GNDRLIWIDLEMTG---L--DTDRDSIIEIATIVT-DAQLNVLAEGPELAIAHSLETLEAMDEWNRNQHRRSGLWQRVLD 80 (194)
T ss_dssp -CCEEEEEEEEESC---S--CTTTCCEEEEEEEEE-ETTCCEEEECCCEECCCCHHHHHTSCSHHHHHHHHHTHHHHHHH
T ss_pred CCCCEEEEEeECCC---C--CCCCCccEEEEEEEE-cCCcceeccCceEEEeCCHHHhhccchHHHHHHHhhCCCHHHHh
Confidence 34678999999994 4 467899999998763 332110101 12345544211 000 00 001122
Q ss_pred EcCCHHHHHHHHHHHHhhhCC---CEEEecCcccccHHHHHHHHHHh
Q psy5921 449 FVSNEKELFSIFIENVRQWDP---DILIGYEIETLSWGYLLERGYVL 492 (1200)
Q Consensus 449 ~~~nEkeLL~~F~~~I~~~DP---DIIvGyNi~~FDlpYL~~Ra~~l 492 (1200)
--.+..+.+..|.+++...-| .+++|||. .||+.+|...+..+
T Consensus 81 ~~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~-~FD~~fL~~~~~~~ 126 (194)
T 2gbz_A 81 SQVTHAQAEAQTVAFLGEWIRAGASPMCGNSI-CQDRRFLHRQMSRL 126 (194)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCTTSSCEEESSH-HHHHHHHHHHCHHH
T ss_pred cCCCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHhHHHHHHHHHHh
Confidence 245789999999999987532 34999998 69999998876554
No 29
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=83.62 E-value=0.6 Score=48.46 Aligned_cols=151 Identities=12% Similarity=0.099 Sum_probs=83.3
Q ss_pred cceEEEEEEEeccCCCCCCCCCC-CcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCC----C-CCeEEEEcCCHHHH
Q psy5921 383 YLTVLAVEIHAISRALLKPDPAY-DEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVR----T-KPIQMHFVSNEKEL 456 (1200)
Q Consensus 383 ~LtvlSlDIeT~t~~~l~Pdp~~-DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~----~-~~~~V~~~~nEkeL 456 (1200)
..+.+.||+||++ +. |.. ++|+.|++... ++. ... -..++|....+... . ....+.-..+..+.
T Consensus 4 ~~~~vviD~ETTG---l~--~~~~~~iiei~~v~~-~g~--~i~--~~lV~P~~~i~~~~~~i~GIt~~~l~~a~~~~~v 73 (189)
T 1wlj_A 4 SREVVAMDCEMVG---LG--PHRESGLARCSLVNV-HGA--VLY--DKFIRPEGEITDYRTRVSGVTPQHMVGATPFAVA 73 (189)
T ss_dssp --CEEEEEEEEEE---ET--TTTEEEEEEEEEECT-TCC--EEE--EEEEECSSCEEECCHHHHCCCHHHHTTCEEHHHH
T ss_pred CCeEEEEEeECcC---cC--CCCCceEEEEEEEeC-CCC--EEE--eeEecCCCCCCccccCCCCCCHHHHcCCCCHHHH
Confidence 4578999999995 33 344 46778887532 221 111 12456544322110 0 00011112467889
Q ss_pred HHHHHHHHhhhCCCEEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHH-
Q psy5921 457 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLL- 535 (1200)
Q Consensus 457 L~~F~~~I~~~DPDIIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~- 535 (1200)
+..|.+++. -.+++|||.. ||+.+|..- .+ ..-.+|++...
T Consensus 74 ~~~~~~~l~---~~~lV~hn~~-fD~~~L~~~-----~~-----------------------------~~~~idt~~~~~ 115 (189)
T 1wlj_A 74 RLEILQLLK---GKLVVGHDLK-HDFQALKED-----MS-----------------------------GYTIYDTSTDRL 115 (189)
T ss_dssp HHHHHHHHT---TSEEEESSHH-HHHHHTTCC-----CT-----------------------------TCEEEEGGGCHH
T ss_pred HHHHHHHHC---CCEEEECCcH-HHHHHHHHh-----CC-----------------------------CCceechHhhhh
Confidence 999999985 4799999985 999886321 00 01255665542
Q ss_pred -Hh--hh-cCCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 536 -RH--EV-NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 536 -r~--el-~L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
++ .+ ...+|+|++++..+||.....- +. ....+.|+..+++|+.++
T Consensus 116 ~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~-----------~~-------~H~Al~Da~ata~l~~~l 165 (189)
T 1wlj_A 116 LWREAKLDHCRRVSLRVLSERLLHKSIQNS-----------LL-------GHSSVEDARATMELYQIS 165 (189)
T ss_dssp HHHHHTC-----CCHHHHHHHHTCCCCSCC-----------TT-------CCCHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCCCCccHHHHHHHHcCCCCCCC-----------CC-------CcCcHHHHHHHHHHHHHH
Confidence 22 22 2479999999998877543210 00 012367888888887765
No 30
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=83.24 E-value=3.8 Score=42.84 Aligned_cols=96 Identities=14% Similarity=0.166 Sum_probs=59.6
Q ss_pred CCCE-EEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhc-CCCCC
Q psy5921 468 DPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVN-LQSYT 545 (1200)
Q Consensus 468 DPDI-IvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~-L~SYs 545 (1200)
||+| .+|||+. +|+..|.+. +|+. +.| ++|+-.++...+. -.+|+
T Consensus 94 d~~i~Kv~~~~k-~D~~~L~~~---~gi~---------------------------~~~--~fDlt~lAayll~~~~~~~ 140 (208)
T 2e6m_A 94 NKSIKKAGVGIE-GDQWKLLRD---FDVK---------------------------LES--FVELTDVANEKLKCAETWS 140 (208)
T ss_dssp CTTSEEEESSHH-HHHHHHHHH---HCCC---------------------------CCS--EEEHHHHHHHHTTCCCCCC
T ss_pred CCCceEEEEeeH-HHHHHHHHH---CCCC---------------------------CCC--EEEHHHHHHHHccCCCChh
Confidence 6775 4899985 677666532 4543 235 7885455544443 36899
Q ss_pred HHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 546 FENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 546 Le~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
|++++..+|+.+........+..| ...+ . ....+.|...|+..+++|...|
T Consensus 141 L~~L~~~~l~~~~~K~k~~~~s~W-~~~~-L-~~~q~~YAa~Da~~~~~L~~~L 191 (208)
T 2e6m_A 141 LNGLVKHVLGKQLLKDKSIRCSNW-SNFP-L-TEDQKLYAATDAYAGLIIYQKL 191 (208)
T ss_dssp HHHHHHHHHSCBCCCCHHHHTSCT-TSSS-C-CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCCCeeeCCC-CCCC-C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998865321101122222 2211 1 1347899999999999988776
No 31
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=79.46 E-value=7.6 Score=45.66 Aligned_cols=143 Identities=13% Similarity=0.099 Sum_probs=88.0
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENV 464 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I 464 (1200)
.+++||.|+.+. ++....++.|.++..+. ++++++... . +.+..|..++
T Consensus 130 ~~vavDtE~~~~-----~~~~~~l~lIQLa~~~~---------~~lidpl~l--------------~---~~l~~L~~lL 178 (428)
T 3saf_A 130 QEFAVNLEHHSY-----RSFLGLTCLMQISTRTE---------DFIIDTLEL--------------R---SDMYILNESL 178 (428)
T ss_dssp SEEEEEEEEECT-----TCSSCEEEEEEEECSSC---------EEEEETTTT--------------G---GGGGGGHHHH
T ss_pred CeEEEEEEecCC-----CCCCCeEEEEEEEeCCc---------EEEEEeccc--------------h---hhHHHHHHHH
Confidence 579999999742 24456788888765321 333433210 0 1233444444
Q ss_pred hhhCCCEE-EecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcCCC
Q psy5921 465 RQWDPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS 543 (1200)
Q Consensus 465 ~~~DPDII-vGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~S 543 (1200)
. ||+|+ +|||. .+|+..|.++ +|+.. .| ++|+.... ..+....
T Consensus 179 ~--dp~i~KV~H~~-k~Dl~~L~~~---~Gi~~---------------------------~~--~fDT~lAa-~lL~~~~ 222 (428)
T 3saf_A 179 T--DPAIVKVFHGA-DSDIEWLQKD---FGLYV---------------------------VN--MFDTHQAA-RLLNLGR 222 (428)
T ss_dssp T--CTTSEEEESSC-HHHHHHHHHH---HCCCC---------------------------SS--EEEHHHHH-HHTTCSC
T ss_pred c--CCCceEEEeeh-HHHHHHHHHH---cCCCc---------------------------Cc--eeechhHH-HHhCCCC
Confidence 3 78875 89998 5888877543 35431 12 67987544 3344556
Q ss_pred CCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 544 YTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 544 YsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
++|.+++.++||...+.- .....| ...+ . -...+.|+..||..+++|...|
T Consensus 223 ~gL~~Lv~~~Lg~~l~K~--~~~sdW-~~rp-L-s~~q~~YAA~DA~~ll~L~~~L 273 (428)
T 3saf_A 223 HSLDHLLKLYCNVDSNKQ--YQLADW-RIRP-L-PEEMLSYARDDTHYLLYIYDKM 273 (428)
T ss_dssp CSHHHHHHHHHCCCCCCT--TTTSCT-TCSS-C-CHHHHHHHHHHHHTHHHHHHHH
T ss_pred CCHHHHHHHHcCCCCCcc--cccccc-ccCC-C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998654321 122223 2221 1 1456899999999999998876
No 32
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=75.01 E-value=6.6 Score=41.52 Aligned_cols=101 Identities=18% Similarity=0.112 Sum_probs=68.7
Q ss_pred HHHHHHhhhCCCEE-EecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHh
Q psy5921 459 IFIENVRQWDPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 537 (1200)
Q Consensus 459 ~F~~~I~~~DPDII-vGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~ 537 (1200)
.|.+++. ||+|+ +||.+ .+|+..|.+. +|+... -++|+-.++..
T Consensus 99 ~L~~lL~--d~~i~Kvg~~~-~~D~~~L~~~---~g~~~~-----------------------------~~~Dl~~la~~ 143 (206)
T 1vk0_A 99 DLYRFFA--SKFVTFVGVQI-EEDLDLLREN---HGLVIR-----------------------------NAINVGKLAAE 143 (206)
T ss_dssp HHHHHHT--CSSSEEEESSC-HHHHHHHHHH---HCCCCS-----------------------------SEEEHHHHHHH
T ss_pred HHHHHhc--CCCceEEEecc-HHHHHHHHHh---cCCCcC-----------------------------CeeeHHHHHHH
Confidence 3445553 88975 89988 5899988543 444311 16787655544
Q ss_pred hhc---CCCCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 538 EVN---LQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 538 el~---L~SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
.+. ..+.+|..+++++||... .-.....++|-. . . ...-+.|...||...++|..+|
T Consensus 144 ~lg~~~~~~~gL~~Lv~~~lg~~l-K~k~~~~SdW~~-p--L-s~~Qi~YAA~Da~~l~~l~~~L 203 (206)
T 1vk0_A 144 ARGTLVLEFLGTRELAHRVLWSDL-GQLDSIEAKWEK-A--G-PEEQLEAAAIEGWLIVNVWDQL 203 (206)
T ss_dssp HHTCGGGGGCCHHHHHHHHHCCCC-HHHHHHHHTGGG-S--C-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCccHHHHHHHHhCCcC-CCCCcccCCCCC-c--C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 332 467899999999999765 111235667755 3 1 3566899999999999999886
No 33
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=62.73 E-value=33 Score=41.91 Aligned_cols=144 Identities=10% Similarity=-0.036 Sum_probs=86.3
Q ss_pred EEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHHh
Q psy5921 386 VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVR 465 (1200)
Q Consensus 386 vlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I~ 465 (1200)
-.++|+|+... ++...+++.|+++.... .+.+. . .....+..|..++.
T Consensus 31 ~~aldtE~~~~-----~~~~a~Lvgisla~~~~---------a~yIp-----------------~-~~~~~l~~Lk~lLe 78 (592)
T 3pv8_A 31 KAALVVEVVEE-----NYHDAPIVGIAVVNEHG---------RFFLR-----------------P-ETALADPQFVAWLG 78 (592)
T ss_dssp EEEEEEECCSS-----SCTTCCCCEEEEEETTE---------EEEEC-----------------H-HHHTTCHHHHHHHT
T ss_pred CcEEEEEEcCC-----ccCcccEEEEEEEcCCc---------eEEEc-----------------c-chhhHHHHHHHHHh
Confidence 35788888842 46677888888765321 11111 0 01223455666654
Q ss_pred hhCCC-EEEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhh--cCC
Q psy5921 466 QWDPD-ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV--NLQ 542 (1200)
Q Consensus 466 ~~DPD-IIvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el--~L~ 542 (1200)
||+ ..+|||. .||+.+|.+ +|+.. .| .++|++-... .+ ...
T Consensus 79 --d~~i~KV~hn~-K~Dl~vL~~----~Gi~l---------------------------~g-~~fDTmLAAY-LL~p~~~ 122 (592)
T 3pv8_A 79 --DETKKKSMFDS-KRAAVALKW----KGIEL---------------------------CG-VSFDLLLAAY-LLDPAQG 122 (592)
T ss_dssp --CTTSEEEESSH-HHHHHHHHH----TTCCC---------------------------CC-EEEEHHHHHH-HHCGGGC
T ss_pred --CCCCeEEEech-HHHHHHHHH----cCCCC---------------------------CC-ccchHHHHHH-HcCCCCC
Confidence 677 4689998 588887742 45542 23 2679864432 22 346
Q ss_pred CCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 543 SYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 543 SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+|+|++++..+|+...+. .+++..|-.....-.......|+..|+..+++|...|
T Consensus 123 ~~~L~~La~~yLg~~l~~--~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L 177 (592)
T 3pv8_A 123 VDDVAAAAKMKQYEAVRP--DEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPF 177 (592)
T ss_dssp CCSHHHHHGGGTCCSSCC--HHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHcCCCCch--HHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999865433 3444332111000012567899999999999887655
No 34
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=31.93 E-value=45 Score=38.81 Aligned_cols=143 Identities=15% Similarity=0.153 Sum_probs=85.4
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENV 464 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I 464 (1200)
.++++|+|+.... +-...+..|.+++.+ +++++++.. .. +.+..|..++
T Consensus 107 ~~vavDtE~~~~~-----~~~~~l~liQla~~~---------~~ylid~l~--------------l~---~~l~~L~~lL 155 (410)
T 2hbj_A 107 KEIAVDLEHHDYR-----SYYGIVCLMQISTRE---------RDYLVDTLK--------------LR---ENLHILNEVF 155 (410)
T ss_dssp SEEEEEEEEECSS-----SSSCEEEEEEEECSS---------CEEEEETTT--------------TT---TTGGGGHHHH
T ss_pred CceEEEeeecCCc-----CCCCcEEEEEEEECC---------cEEEEechh--------------hh---hhHHHHHHHH
Confidence 6789999987421 234567777766522 133443211 01 1133344444
Q ss_pred hhhCCCE-EEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcCCC
Q psy5921 465 RQWDPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS 543 (1200)
Q Consensus 465 ~~~DPDI-IvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L~S 543 (1200)
.||+| -+|||.. +|+..|.+. +|+. +.| ++|+....+ .+...+
T Consensus 156 --~d~~i~KV~h~~k-~Dl~~L~~~---~Gi~---------------------------~~~--~fDt~lAa~-LL~~~~ 199 (410)
T 2hbj_A 156 --TNPSIVKVFHGAF-MDIIWLQRD---LGLY---------------------------VVG--LFDTYHASK-AIGLPR 199 (410)
T ss_dssp --TCTTSEEEESSCH-HHHHHHHHH---HCCC---------------------------CSS--EEEHHHHHH-HHTCSC
T ss_pred --cCCCceEEEEehH-HHHHHHHHH---cCCC---------------------------cCC--EEEcHHHHH-HhCCCc
Confidence 37886 4899984 788877643 3543 235 789875443 445557
Q ss_pred CCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 544 YTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 544 YsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
|+|..++.++||..... ......| ...+ . ....+.|...||..++.|..+|
T Consensus 200 ~~L~~L~~~~lg~~l~K--~~~~sdW-~~rp-L-~~~q~~YAa~Da~~ll~L~~~L 250 (410)
T 2hbj_A 200 HSLAYLLENFANFKTSK--KYQLADW-RIRP-L-SKPMTAAARADTHFLLNIYDQL 250 (410)
T ss_dssp CSHHHHHHHHSCCCCCC--TTTTSCT-TCSS-C-CHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCHHHHHHHHcCCCCCc--cccccCC-CCCC-C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998754321 1112233 2211 0 1257899999999999998876
No 35
>3abd_X REV3, HREV3, DNA polymerase zeta catalytic subunit; horma, DNA replication, translesion DNA SYNT cell cycle, cell division, mitosis, DNA damage; HET: DNA; 1.90A {Homo sapiens} PDB: 3abe_Z*
Probab=25.70 E-value=35 Score=27.42 Aligned_cols=19 Identities=26% Similarity=0.730 Sum_probs=15.6
Q ss_pred CceEEecCCCCCChHHHHH
Q psy5921 197 KSNFIKPIAKPPTSKSVTR 215 (1200)
Q Consensus 197 ~~~~i~P~~~pPs~~~v~~ 215 (1200)
.--|++|+++||+|+++-.
T Consensus 28 ~~~ILKPLMSPP~ReEI~a 46 (52)
T 3abd_X 28 TANILKPLMSPPSREEIMA 46 (52)
T ss_dssp CTTEEEESSCCCCHHHHHH
T ss_pred cccccccccCCccHHHHHH
Confidence 4457899999999998754
No 36
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=21.12 E-value=92 Score=35.50 Aligned_cols=142 Identities=16% Similarity=0.102 Sum_probs=84.2
Q ss_pred eEEEEEEEeccCCCCCCCCCCCcEEEEEEEecCCCCCCCceEEEEEecCCCCCCcCCCCCeEEEEcCCHHHHHHHHHHHH
Q psy5921 385 TVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENV 464 (1200)
Q Consensus 385 tvlSlDIeT~t~~~l~Pdp~~DeIiaIs~~v~~d~~~d~~~~gv~~v~~~~~~p~~~~~~~~V~~~~nEkeLL~~F~~~I 464 (1200)
.+++||.|+.... +....++.|.++.. + +++++++.. + . .+..|..++
T Consensus 23 ~~va~D~E~~~~~-----~~~~~l~liqla~~-~--------~~~lid~~~-----------l---~----~~~~L~~ll 70 (375)
T 1yt3_A 23 PAIALDTEFVRTR-----TYYPQLGLIQLFDG-E--------HLALIDPLG-----------I---T----DWSPLKAIL 70 (375)
T ss_dssp SEEEEEEEEECCS-----CSSCEEEEEEEECS-S--------CEEEECGGG-----------C---S----CCHHHHHHH
T ss_pred CeEEEEeeecCCC-----cCCCceEEEEEecC-C--------cEEEEeCCC-----------C---C----ChHHHHHHH
Confidence 6789999988421 23456777776642 1 134443210 0 1 134455554
Q ss_pred hhhCCCE-EEecCcccccHHHHHHHHHHhCCCCcccccccccccccccCccccccceeeecceEEeehHHHHHhhhcC-C
Q psy5921 465 RQWDPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNL-Q 542 (1200)
Q Consensus 465 ~~~DPDI-IvGyNi~~FDlpYL~~Ra~~lgi~l~~~lgR~~~~~~~~~s~~~~~~~~~~i~GRlvlDl~r~~r~el~L-~ 542 (1200)
. ||+| .+|||.. +|+..|.+. +|+.. . .++|+..... .+.. .
T Consensus 71 ~--d~~i~Kv~h~~k-~Dl~~L~~~---~Gi~~----------------------------~-~~fDt~lAa~-lL~~~~ 114 (375)
T 1yt3_A 71 R--DPSITKFLHAGS-EDLEVFLNV---FGELP----------------------------Q-PLIDTQILAA-FCGRPM 114 (375)
T ss_dssp H--CTTSEEEESSCH-HHHHHHHHH---HSSCC----------------------------S-SEEEHHHHHH-HTTCCT
T ss_pred c--CCCceEEEeeHH-HHHHHHHHH---cCCCC----------------------------C-cEEEcHHHHH-HcCCCC
Confidence 3 6786 5899984 788887642 34431 1 2678875443 2333 4
Q ss_pred CCCHHHHHHHHcCCCcCCCChHhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHhhcc
Q psy5921 543 SYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 599 (1200)
Q Consensus 543 SYsLe~Va~~vLg~rk~~~s~~~L~~~~~~~~~~~r~~vl~Y~l~Dv~l~l~Ll~kL 599 (1200)
+|+|++++.++||..... ....+.| ...+ . ....+.|...|+..++.|...|
T Consensus 115 ~~~L~~L~~~~l~~~l~K--~~~~sdw-~~rp-L-~~~q~~YAa~Da~~l~~L~~~L 166 (375)
T 1yt3_A 115 SWGFASMVEEYSGVTLDK--SESRTDW-LARP-L-TERQCEYAAADVWYLLPITAKL 166 (375)
T ss_dssp TCCHHHHHHHHHCCCCCC--TTTTSCT-TSSS-C-CHHHHHHHHHHHHTHHHHHHHH
T ss_pred ChhHHHHHHHHcCCCCCC--CcccCCC-CCCC-C-CHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999998854332 1122233 2211 1 1256899999999999998876
Done!