Your job contains 1 sequence.
>psy5921
MFEDKPTSCNTVDVVGSGSTSSAFSNSLPEANKMEGRAENEHMISSSESYLFTQNKSYDS
PTIVAKQTLLPLSGELEKQIISAKSSSTEGSSVVTSYIKLKCKPISRALVVEELINTDVT
NILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDA
TRNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQK
ILENEQCSQKGIVDVKCFEESSALERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRES
NQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPD
TTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPP
EEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETL
SWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVN
LQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLD
FIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESL
PLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNV
SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR
VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQC
RVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRY
VGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFS
KIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVS
GAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRK
LHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQ
AWQRSQDQVNKVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHLALF
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5921
(1200 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|F1P7E8 - symbol:REV3L "DNA polymerase" species:... 2241 8.3e-264 3
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 2242 2.9e-263 3
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 2241 2.1e-262 3
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 2239 8.8e-262 3
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 2225 2.3e-260 3
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 2225 3.4e-260 3
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 2230 1.4e-258 3
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 2285 2.3e-257 3
UNIPROTKB|F1NQT0 - symbol:REV3L "DNA polymerase" species:... 2197 3.2e-256 3
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 2231 6.0e-241 5
UNIPROTKB|I3L6U8 - symbol:LOC100737059 "DNA polymerase" s... 2170 8.3e-225 1
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 1566 1.6e-176 4
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 1673 3.6e-174 2
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 1562 8.3e-171 3
SGD|S000006088 - symbol:REV3 "Catalytic subunit of DNA po... 1512 1.4e-157 2
UNIPROTKB|A8IZI8 - symbol:POLZ1 "DNA polymerase" species:... 1524 2.4e-156 1
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 930 2.4e-152 4
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 1463 3.5e-152 2
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 1412 2.5e-147 2
UNIPROTKB|F1RZP3 - symbol:F1RZP3 "Uncharacterized protein... 1350 6.5e-138 1
WB|WBGene00021344 - symbol:Y37B11A.2 species:6239 "Caenor... 1107 1.5e-118 3
UNIPROTKB|Q9BKQ3 - symbol:Y37B11A.2 "DNA polymerase" spec... 1107 1.5e-118 3
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 921 1.6e-91 2
RGD|1307087 - symbol:Rev3l "REV3-like, polymerase (DNA di... 901 2.5e-90 1
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 609 3.5e-77 3
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 586 2.9e-76 2
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 583 3.9e-76 2
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 576 9.1e-76 2
WB|WBGene00008645 - symbol:F10C2.4 species:6239 "Caenorha... 577 9.6e-76 2
UNIPROTKB|P90829 - symbol:F10C2.4 "DNA polymerase delta c... 577 9.6e-76 2
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 568 2.4e-74 2
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 568 2.4e-74 2
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 524 2.1e-70 2
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 722 4.1e-68 2
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 714 1.8e-67 2
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 669 6.5e-62 2
GENEDB_PFALCIPARUM|PF10_0362 - symbol:PF10_0362 "DNA poly... 394 9.3e-62 7
UNIPROTKB|Q8IJ38 - symbol:PF10_0362 "DNA polymerase" spec... 394 9.3e-62 7
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 651 1.2e-60 1
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 650 7.6e-60 2
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 623 1.1e-56 2
UNIPROTKB|Q8X0N7 - symbol:B10H4.020 "DNA polymerase" spec... 588 1.1e-53 1
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 576 2.3e-52 1
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 575 3.0e-52 1
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 575 1.4e-51 2
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 547 3.3e-49 1
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 535 6.8e-48 1
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 535 6.8e-48 1
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 533 7.9e-48 1
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 517 6.8e-46 1
UNIPROTKB|I3LER4 - symbol:I3LER4 "Uncharacterized protein... 463 9.7e-43 1
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 453 7.8e-40 2
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 453 7.8e-40 2
UNIPROTKB|Q59J88 - symbol:Q59J88 "DNA polymerase" species... 289 1.2e-31 3
RGD|621816 - symbol:Pola1 "polymerase (DNA directed), alp... 282 5.7e-31 3
UNIPROTKB|O89042 - symbol:Pola1 "DNA polymerase alpha cat... 282 5.7e-31 3
UNIPROTKB|Q59J90 - symbol:Q59J90 "DNA polymerase" species... 283 2.1e-30 3
UNIPROTKB|Q8TSB3 - symbol:MA_0885 "DNA polymerase" specie... 372 2.3e-30 1
MGI|MGI:99660 - symbol:Pola1 "polymerase (DNA directed), ... 273 1.1e-29 3
UNIPROTKB|F6Y1C9 - symbol:POLA1 "DNA polymerase" species:... 269 2.4e-29 3
ZFIN|ZDB-GENE-030114-9 - symbol:pola1 "polymerase (DNA di... 279 7.2e-29 3
UNIPROTKB|P09884 - symbol:POLA1 "DNA polymerase alpha cat... 278 7.3e-29 4
UNIPROTKB|A6NMQ1 - symbol:POLA1 "DNA polymerase" species:... 278 7.4e-29 4
UNIPROTKB|E2QVU2 - symbol:POLA1 "Uncharacterized protein"... 269 9.3e-29 3
UNIPROTKB|Q9DE46 - symbol:pola1 "DNA polymerase alpha cat... 251 1.4e-28 3
UNIPROTKB|E1BJF4 - symbol:POLA1 "DNA polymerase" species:... 240 3.6e-26 3
UNIPROTKB|Q7SBT9 - symbol:NCU07870 "DNA polymerase" speci... 268 1.0e-25 4
CGD|CAL0002431 - symbol:POL1 species:5476 "Candida albica... 234 1.1e-25 3
DICTYBASE|DDB_G0282191 - symbol:polA1 "DNA polymerase alp... 269 1.1e-25 3
UNIPROTKB|F1NR19 - symbol:POLA1 "DNA polymerase" species:... 320 2.0e-24 1
UNIPROTKB|Q59J89 - symbol:Q59J89 "DNA polymerase" species... 327 1.8e-23 2
UNIPROTKB|Q9NAH1 - symbol:Y47D3A.29 "DNA polymerase" spec... 225 2.6e-23 2
WB|WBGene00012936 - symbol:Y47D3A.29a species:6239 "Caeno... 225 2.7e-23 2
UNIPROTKB|C7IVS4 - symbol:Y47D3A.29 "DNA polymerase" spec... 225 2.7e-23 2
POMBASE|SPAC3H5.06c - symbol:pol1 "DNA polymerase alpha c... 320 5.9e-23 2
UNIPROTKB|I3LIH4 - symbol:POLA1 "DNA polymerase" species:... 232 8.9e-23 3
UNIPROTKB|Q23AJ0 - symbol:TTHERM_00424700 "DNA polymerase... 238 1.6e-20 4
FB|FBgn0259113 - symbol:DNApol-alpha180 "DNA polymerase a... 205 2.0e-20 3
UNIPROTKB|Q7RBM5 - symbol:PY06115 "DNA polymerase" specie... 277 5.6e-20 3
ASPGD|ASPL0000000737 - symbol:AN10755 species:162425 "Eme... 276 1.0e-19 1
UNIPROTKB|Q5B0J8 - symbol:AN5932.2 "DNA polymerase" speci... 276 1.6e-19 1
UNIPROTKB|Q755Y6 - symbol:AER381C "DNA polymerase" specie... 243 3.5e-16 1
UNIPROTKB|Q0JHE4 - symbol:Os01g0868300 "DNA polymerase" s... 173 8.5e-14 4
UNIPROTKB|O48653 - symbol:LOC_Os01g64820 "DNA polymerase ... 173 2.2e-13 4
UNIPROTKB|Q9KSP4 - symbol:VC_1212 "DNA polymerase" specie... 153 1.5e-12 2
TIGR_CMR|VC_1212 - symbol:VC_1212 "DNA polymerase II" spe... 153 1.5e-12 2
SGD|S000005046 - symbol:POL1 "Catalytic subunit of the DN... 222 3.8e-12 2
UNIPROTKB|A8IXV5 - symbol:CHLREDRAFT_172920 "Predicted pr... 129 5.8e-10 3
UNIPROTKB|P21189 - symbol:polB "DNA polymerase II" specie... 113 8.8e-08 2
UNIPROTKB|A8J9T2 - symbol:POLA1 "DNA polymerase" species:... 129 2.2e-07 3
TIGR_CMR|SO_1820 - symbol:SO_1820 "DNA polymerase II" spe... 108 1.7e-06 2
UNIPROTKB|P26811 - symbol:dpo1 "DNA polymerase 1" species... 129 7.6e-06 3
UNIPROTKB|Q0D7U2 - symbol:Os07g0209500 "Os07g0209500 prot... 109 6.1e-05 1
UNIPROTKB|P95979 - symbol:dpo3 "DNA polymerase 3" species... 132 0.00013 1
UNIPROTKB|A6V6S5 - symbol:polB "DNA polymerase" species:3... 99 0.00023 2
>UNIPROTKB|F1P7E8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
Ensembl:ENSCAFT00000006343 Uniprot:F1P7E8
Length = 3058
Score = 2241 (793.9 bits), Expect = 8.3e-264, Sum P(3) = 8.3e-264
Identities = 415/757 (54%), Positives = 571/757 (75%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + +EK LF + ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2302 LEVTYAPDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLGQMISRVP 2361
Query: 505 E--VEKRNS-SRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ +E R + RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2362 DDKIENRFAPERDDYGSETMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2421
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2422 PLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2481
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2482 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2541
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2542 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDITVSPNG 2601
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
+AFV S+R G+LP+ML+EIL TRLMVKQSMK YK + AL R+L ARQLGLKLIANVT+G
Sbjct: 2602 IAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFG 2661
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YTAANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G T
Sbjct: 2662 YTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2721
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AK
Sbjct: 2722 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2781
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2782 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEY 2841
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG + YKPGACVPAL L R+ + D R+EPRV ERVPYVI+ G PG+PLI+LV+ P E+L
Sbjct: 2842 RGSSSYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVIIYGTPGVPLIQLVRRPVEVL 2901
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
QD +LRLN+ YYIT+ I+PPL R F L+G V WY LPR S +K TI
Sbjct: 2902 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFNWYHELPRIQKATSSSRSEPEGRKGTI 2961
Query: 1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
SQYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C G
Sbjct: 2962 SQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAVILNQEIRELERKQEQLVKICKNCTG 3019
Query: 1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
+ C+SL+CPVL++ +++ R+L + Y+ L D
Sbjct: 3020 CFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3056
Score = 246 (91.7 bits), Expect = 8.3e-264, Sum P(3) = 8.3e-264
Identities = 67/219 (30%), Positives = 121/219 (55%)
Query: 316 THPDCSK-SSQIDFNPDLFKSFIRKQ-------LETPKRRICDSYAIDAMTPDTTGDYQM 367
T P K S + N D F+ + Q + TPK+ ++ ID + + T +++
Sbjct: 2152 TEPKTQKLSHKKGSNTDTFRRILLTQAKNQFAAVNTPKK---ETSQIDGPSLNNTYGFKV 2208
Query: 368 GLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT-CP-PEEDRK 425
+ NL E + E LT+++VE+HA +R L+PDP +D + A+FY + + P P+ D+
Sbjct: 2209 SVQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFDPICALFYCISSDTPLPDTDKT 2268
Query: 426 --VGIILIGQESELP--EVRTK-PI---------QMHFVSNEKELFSIFIENVRQWDPDI 471
G+I+I ++ + ++R + P+ ++ + +EK LF + ++++DPDI
Sbjct: 2269 ELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITGLEVTYAPDEKALFQEIADIIKRYDPDI 2328
Query: 472 LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRN 510
L+GYEI+ SWGYLL+R L ++L Q +SR+ + + N
Sbjct: 2329 LLGYEIQMHSWGYLLQRAAALSVDLGQMISRVPDDKIEN 2367
Score = 92 (37.4 bits), Expect = 8.3e-264, Sum P(3) = 8.3e-264
Identities = 52/199 (26%), Positives = 82/199 (41%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAA-PVAL 154
+K P SR ++ L++ D++ + QEPF SN D+ EI + + +E P L
Sbjct: 1802 LKPLMSPPSREEIMATLLDHDLSETIYQEPFCSNPSDVPEKPREIGGRLLMVETRLPNDL 1861
Query: 155 LE-EHRCLFSGLSEWRQRVCLEVT----GDATRNVNDIME-----SFQHIFPKSNFIKPI 204
E E GL W+ G RN ++ S + K I P
Sbjct: 1862 AEFEGDFSLEGLRLWKTAFSAMTQNPRPGSPLRNGQAVVNKGSSNSSKMAEDKKIVIMPC 1921
Query: 205 AKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCSQKGIVDVKCFEESSAL 264
P+ + V WL+ KE ++R+ +K+ +NE G+V K E S+
Sbjct: 1922 KCAPSRQLVQAWLQAKEEYERS------------KKLSKNEPT---GVV--KSAENFSS- 1963
Query: 265 ERSMKPDDRPSPTRKNKST 283
S+ PDD+P K +T
Sbjct: 1964 --SVNPDDKPVVPPKMSTT 1980
Score = 42 (19.8 bits), Expect = 1.6e-258, Sum P(3) = 1.6e-258
Identities = 19/92 (20%), Positives = 34/92 (36%)
Query: 182 RNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKI 241
+N+ D+ + + I P T ++ + + R+S+ S+ +Q
Sbjct: 1280 KNIFDLSNHLSQVAQNTQISSGITSPKTEENANTQKNYLSSIGKLNEYRNSLESKPDQAY 1339
Query: 242 LENE-QC--SQKGIVDVKCFEESSALERSMKP 270
N C SQ+ IV C E S + P
Sbjct: 1340 APNFLHCKDSQQQIV---CGSEQSKHNETCSP 1368
Score = 39 (18.8 bits), Expect = 2.1e-239, Sum P(4) = 2.1e-239
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 327 DFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEV 375
+F P+ K + + + + + + TP G+ Q GL L E+
Sbjct: 1409 NFKPERVKQRSLSEAISQTKALSQCKSRNVSTPSAFGEGQSGLAVLKEL 1457
Score = 39 (18.8 bits), Expect = 2.1e-239, Sum P(4) = 2.1e-239
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 420 PEEDRKVGIILIGQESELPEVRTK---PIQMHFVSNEKELFSIFIENVRQWDP 469
PE+ R++G L+ E+ LP + + + K FS +N R P
Sbjct: 1840 PEKPREIGGRLLMVETRLPNDLAEFEGDFSLEGLRLWKTAFSAMTQNPRPGSP 1892
Score = 39 (18.8 bits), Expect = 5.1e-234, Sum P(2) = 5.1e-234
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 428 IILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWD 468
+ L+G + P P +H N FS F+E+ + D
Sbjct: 1191 VSLMGSTIDHPLSAPLPTGIHAQQNLSGCFSSFLESKKPVD 1231
Score = 38 (18.4 bits), Expect = 4.2e-258, Sum P(3) = 4.2e-258
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 169 RQRVCLEVTGDAT-RNVNDIMESFQHIF-PKS-NFIKPIAKPPTSKSV 213
R L T D++ R+ + +S F P++ + +KP+ PP+ + +
Sbjct: 1767 RNNDMLTPTPDSSPRSTSSPSQSKNGSFTPRTAHILKPLMSPPSREEI 1814
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 2242 (794.3 bits), Expect = 2.9e-263, Sum P(3) = 2.9e-263
Identities = 416/757 (54%), Positives = 574/757 (75%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2366 LEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2425
Query: 505 E--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ +E R ++ RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2426 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2485
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2486 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2545
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PSI+QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2546 VLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2605
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2606 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDVTVSPNG 2665
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
VAFV S+R G+LP+ML+EIL TRLMVKQSMK YK + AL R+L+ARQLGLKLIANVT+G
Sbjct: 2666 VAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYKQDRALSRMLNARQLGLKLIANVTFG 2725
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YTAANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G T
Sbjct: 2726 YTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2785
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA KLKFEKVY PC+LQTKKRYVGYMYET DQ +P+++AK
Sbjct: 2786 KEQSFKIGQEIAEAVTATNPRPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKEPVFDAK 2845
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2846 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLVEGKASIQDFIFAKEY 2905
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG Y+PGACVPAL L R+ + D R+EPRV ERVPYVI+ G PGLPLI+L++ P E+L
Sbjct: 2906 RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIIYGTPGLPLIQLIRRPAEVL 2965
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
QD +LRLN+ YYIT+ I+PPL R F L+G V WY+ LPR S +K TI
Sbjct: 2966 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYQELPRIQKATSSSRSELEGRKGTI 3025
Query: 1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
SQYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C G
Sbjct: 3026 SQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAIILNQEIRELERKQEQLIKICRNCTG 3083
Query: 1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
+ C+SL+CPVL++ +++ R+L + Y+ L D
Sbjct: 3084 SFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3120
Score = 242 (90.2 bits), Expect = 2.9e-263, Sum P(3) = 2.9e-263
Identities = 58/186 (31%), Positives = 109/186 (58%)
Query: 341 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2249 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2305
Query: 401 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELP--EVRTK-PI-------- 445
PDP +D + A+FY + + P E+ G+I+I ++ + ++R++ P+
Sbjct: 2306 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITG 2365
Query: 446 -QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2366 LEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2425
Query: 505 EVEKRN 510
+ + N
Sbjct: 2426 DDKIEN 2431
Score = 101 (40.6 bits), Expect = 2.9e-263, Sum P(3) = 2.9e-263
Identities = 40/142 (28%), Positives = 62/142 (43%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAA-PVAL 154
+K P SR +V L++ D++ + QEPF SN D+ EI + + +E P L
Sbjct: 1875 LKPLMSPPSREEIVATLLDHDLSEAIYQEPFCSNPSDVPEKPREIGGRLLMVETRLPNDL 1934
Query: 155 LE-EHRCLFSGLSEWRQRVCLEVT----GDATRN----VN-DIMESFQHIFPKSNFIKPI 204
+E E GL W+ G RN VN + S + + K I P
Sbjct: 1935 IEFEGDFSLEGLRLWKTAFSAMTQNPRPGSPLRNGQAVVNKESSNSHKMVEDKKIVIMPC 1994
Query: 205 AKPPTSKSVTRWLERKEAFKRN 226
P+ + V WL+ KE ++R+
Sbjct: 1995 KYAPSRQLVQAWLQAKEEYERS 2016
Score = 42 (19.8 bits), Expect = 4.9e-257, Sum P(3) = 4.9e-257
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 169 RQRVCLEVTGDAT-RNVNDIMESFQHIF-PKS-NFIKPIAKPPTSKSVTRWL 217
R L T D++ R+ + ++S F P++ + +KP+ PP+ + + L
Sbjct: 1840 RNNDVLTPTPDSSPRSTSSPLQSKNGSFTPRTAHILKPLMSPPSREEIVATL 1891
Score = 41 (19.5 bits), Expect = 6.2e-257, Sum P(3) = 6.2e-257
Identities = 33/162 (20%), Positives = 65/162 (40%)
Query: 120 TNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCL-FSGLSEWRQRVCLEVTG 178
T I +Q+ + F ++ K V L P + + H + +S + ++ ++ +
Sbjct: 1283 TGISAQQRLSNCFSSFLESK---KSVDLRTFPSSRDDSHSSVVYSSIGPGISKINIQRSH 1339
Query: 179 DA----TRNVNDIMESFQHIFPKSNFIKPIAKPPT--SKSVTRWLERKEAFKRNAGT--- 229
+ TR +++ + IF SN + +A+ S ++ E + ++N G+
Sbjct: 1340 NQSAMFTRKETTLIQ--KSIFDLSNHLSQVAQSTQVCSGIISPKTEESSSTQKNCGSSMG 1397
Query: 230 -----RSSVSSRVEQKILENE-QCSQKGIVDVKCFEESSALE 265
RSS+ S+ EQ N C V E+S E
Sbjct: 1398 KLNEYRSSLESKPEQVCAPNFLHCKDSQQQTVSVSEQSKTSE 1439
Score = 38 (18.4 bits), Expect = 1.7e-235, Sum P(3) = 1.7e-235
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 420 PEEDRKVGIILIGQESELP 438
PE+ R++G L+ E+ LP
Sbjct: 1913 PEKPREIGGRLLMVETRLP 1931
Score = 37 (18.1 bits), Expect = 3.9e-233, Sum P(2) = 3.9e-233
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 453 EKELFSIFIENVRQWDPDI 471
EKE + + ++WD DI
Sbjct: 459 EKEEMELSVVMSQRWDSDI 477
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 2241 (793.9 bits), Expect = 2.1e-262, Sum P(3) = 2.1e-262
Identities = 415/757 (54%), Positives = 571/757 (75%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + +EK LF + ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2380 LEVTYAPDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLGQMISRVP 2439
Query: 505 E--VEKRNS-SRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ +E R + RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2440 DDKIENRFAPERDDYGSETMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2499
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2500 PLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2559
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2560 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2619
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2620 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDITVSPNG 2679
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
+AFV S+R G+LP+ML+EIL TRLMVKQSMK YK + AL R+L ARQLGLKLIANVT+G
Sbjct: 2680 IAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFG 2739
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YTAANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G T
Sbjct: 2740 YTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2799
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AK
Sbjct: 2800 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2859
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2860 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEY 2919
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG + YKPGACVPAL L R+ + D R+EPRV ERVPYVI+ G PG+PLI+LV+ P E+L
Sbjct: 2920 RGSSSYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVIIYGTPGVPLIQLVRRPVEVL 2979
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
QD +LRLN+ YYIT+ I+PPL R F L+G V WY LPR S +K TI
Sbjct: 2980 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFNWYHELPRIQKATSSSRSEPEGRKGTI 3039
Query: 1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
SQYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C G
Sbjct: 3040 SQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAVILNQEIRELERKQEQLVKICKNCTG 3097
Query: 1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
+ C+SL+CPVL++ +++ R+L + Y+ L D
Sbjct: 3098 CFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3134
Score = 246 (91.7 bits), Expect = 2.1e-262, Sum P(3) = 2.1e-262
Identities = 67/219 (30%), Positives = 121/219 (55%)
Query: 316 THPDCSK-SSQIDFNPDLFKSFIRKQ-------LETPKRRICDSYAIDAMTPDTTGDYQM 367
T P K S + N D F+ + Q + TPK+ ++ ID + + T +++
Sbjct: 2230 TEPKTQKLSHKKGSNTDTFRRILLTQAKNQFAAVNTPKK---ETSQIDGPSLNNTYGFKV 2286
Query: 368 GLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT-CP-PEEDRK 425
+ NL E + E LT+++VE+HA +R L+PDP +D + A+FY + + P P+ D+
Sbjct: 2287 SVQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFDPICALFYCISSDTPLPDTDKT 2346
Query: 426 --VGIILIGQESELP--EVRTK-PI---------QMHFVSNEKELFSIFIENVRQWDPDI 471
G+I+I ++ + ++R + P+ ++ + +EK LF + ++++DPDI
Sbjct: 2347 ELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITGLEVTYAPDEKALFQEIADIIKRYDPDI 2406
Query: 472 LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRN 510
L+GYEI+ SWGYLL+R L ++L Q +SR+ + + N
Sbjct: 2407 LLGYEIQMHSWGYLLQRAAALSVDLGQMISRVPDDKIEN 2445
Score = 92 (37.4 bits), Expect = 2.1e-262, Sum P(3) = 2.1e-262
Identities = 52/199 (26%), Positives = 82/199 (41%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAA-PVAL 154
+K P SR ++ L++ D++ + QEPF SN D+ EI + + +E P L
Sbjct: 1880 LKPLMSPPSREEIMATLLDHDLSETIYQEPFCSNPSDVPEKPREIGGRLLMVETRLPNDL 1939
Query: 155 LE-EHRCLFSGLSEWRQRVCLEVT----GDATRNVNDIME-----SFQHIFPKSNFIKPI 204
E E GL W+ G RN ++ S + K I P
Sbjct: 1940 AEFEGDFSLEGLRLWKTAFSAMTQNPRPGSPLRNGQAVVNKGSSNSSKMAEDKKIVIMPC 1999
Query: 205 AKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCSQKGIVDVKCFEESSAL 264
P+ + V WL+ KE ++R+ +K+ +NE G+V K E S+
Sbjct: 2000 KCAPSRQLVQAWLQAKEEYERS------------KKLSKNEPT---GVV--KSAENFSS- 2041
Query: 265 ERSMKPDDRPSPTRKNKST 283
S+ PDD+P K +T
Sbjct: 2042 --SVNPDDKPVVPPKMSTT 2058
Score = 42 (19.8 bits), Expect = 4.0e-257, Sum P(3) = 4.0e-257
Identities = 19/92 (20%), Positives = 34/92 (36%)
Query: 182 RNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKI 241
+N+ D+ + + I P T ++ + + R+S+ S+ +Q
Sbjct: 1358 KNIFDLSNHLSQVAQNTQISSGITSPKTEENANTQKNYLSSIGKLNEYRNSLESKPDQAY 1417
Query: 242 LENE-QC--SQKGIVDVKCFEESSALERSMKP 270
N C SQ+ IV C E S + P
Sbjct: 1418 APNFLHCKDSQQQIV---CGSEQSKHNETCSP 1446
Score = 39 (18.8 bits), Expect = 1.6e-237, Sum P(4) = 1.6e-237
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 327 DFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEV 375
+F P+ K + + + + + + TP G+ Q GL L E+
Sbjct: 1487 NFKPERVKQRSLSEAISQTKALSQCKSRNVSTPSAFGEGQSGLAVLKEL 1535
Score = 39 (18.8 bits), Expect = 1.6e-237, Sum P(4) = 1.6e-237
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 420 PEEDRKVGIILIGQESELPEVRTK---PIQMHFVSNEKELFSIFIENVRQWDP 469
PE+ R++G L+ E+ LP + + + K FS +N R P
Sbjct: 1918 PEKPREIGGRLLMVETRLPNDLAEFEGDFSLEGLRLWKTAFSAMTQNPRPGSP 1970
Score = 39 (18.8 bits), Expect = 4.4e-233, Sum P(2) = 4.4e-233
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 428 IILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWD 468
+ L+G + P P +H N FS F+E+ + D
Sbjct: 1269 VSLMGSTIDHPLSAPLPTGIHAQQNLSGCFSSFLESKKPVD 1309
Score = 38 (18.4 bits), Expect = 1.1e-256, Sum P(3) = 1.1e-256
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 169 RQRVCLEVTGDAT-RNVNDIMESFQHIF-PKS-NFIKPIAKPPTSKSV 213
R L T D++ R+ + +S F P++ + +KP+ PP+ + +
Sbjct: 1845 RNNDMLTPTPDSSPRSTSSPSQSKNGSFTPRTAHILKPLMSPPSREEI 1892
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 2239 (793.2 bits), Expect = 8.8e-262, Sum P(3) = 8.8e-262
Identities = 415/757 (54%), Positives = 570/757 (75%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+Q+ + ++EK LF ++++DPDILIGYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2377 LQVTYAADEKTLFQEIANIIKRYDPDILIGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2436
Query: 505 EVEKRN---SSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ + N + RDE + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2437 DDKTENRFAAERDEYGSDVMSEINIVGRITLNLWRIMRNEVALNNYTFENVSFHVLHQRF 2496
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2497 PLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2556
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2557 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2616
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2617 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDITVSPNG 2676
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
+AFV S+R G+LP+ML+EIL TRLMVK+SMK YK + L R+L ARQLGLKLIANVT+G
Sbjct: 2677 IAFVKPSVRKGVLPRMLEEILKTRLMVKRSMKAYKQDRVLSRMLDARQLGLKLIANVTFG 2736
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YTAANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDS+FVL G T
Sbjct: 2737 YTAANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSLFVLLKGAT 2796
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AK
Sbjct: 2797 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2856
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2857 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEY 2916
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG A YKPGACVPAL L R+ + D R+EPRV ERVPYVI+ GAPG+PLI+LV+ P E+L
Sbjct: 2917 RGSASYKPGACVPALELTRKMLTYDRRSEPRVGERVPYVIIYGAPGVPLIQLVRRPVEVL 2976
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
QD +LRLN+ YYIT+ I+PPL R F L+G V WY LPR S +K TI
Sbjct: 2977 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYHELPRIQKATSSSRSELEGRKGTI 3036
Query: 1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
+QYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+++ K+C C G
Sbjct: 3037 AQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAVILNQEIRELERQQERLVKICKNCTG 3094
Query: 1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
+ C+SL+CPVLY+ +++ R+L + Y+ L D
Sbjct: 3095 CFDRHIPCVSLNCPVLYKLSRVNRELSKAPYLRQLLD 3131
Score = 247 (92.0 bits), Expect = 8.8e-262, Sum P(3) = 8.8e-262
Identities = 61/186 (32%), Positives = 110/186 (59%)
Query: 341 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2260 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLEEAKALHEIQNLTLISVELHARTRRDLE 2316
Query: 401 PDPAYDEVKAIFYYLYT-CP-PEEDRK--VGIILIGQESELP--EVRTK-PI-------- 445
PDP +D + A+FY + + P P+ D+ G+I+I ++ + ++R + P+
Sbjct: 2317 PDPEFDPICALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITG 2376
Query: 446 -QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
Q+ + ++EK LF ++++DPDILIGYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2377 LQVTYAADEKTLFQEIANIIKRYDPDILIGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2436
Query: 505 EVEKRN 510
+ + N
Sbjct: 2437 DDKTEN 2442
Score = 87 (35.7 bits), Expect = 8.8e-262, Sum P(3) = 8.8e-262
Identities = 40/153 (26%), Positives = 64/153 (41%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAA-PVAL 154
+K P SR ++ L++ D++ + QEPF SN D+ EI + + +E P L
Sbjct: 1882 LKPLMSPPSREEIMATLLDHDLSETIYQEPFCSNPSDVPEKPREIGGRLLMVETRLPNDL 1941
Query: 155 LE-EHRCLFSGLSEWRQRVCLEVT----GDATRN----VNDIMESFQHIFP-KSNFIKPI 204
E E GL W+ G RN VN + + + K I P
Sbjct: 1942 AEFEGDFSLEGLRLWKTAFSAMTQNPRPGSPPRNGQAVVNKGSSNNRKMAEDKKIVIMPC 2001
Query: 205 AKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRV 237
P+ + V WL+ KE ++R+ + +RV
Sbjct: 2002 KCAPSRQLVQAWLQAKEEYERSKKLSKTEPTRV 2034
Score = 52 (23.4 bits), Expect = 4.4e-258, Sum P(3) = 4.4e-258
Identities = 25/93 (26%), Positives = 43/93 (46%)
Query: 193 HIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRS-----SVSSRVEQKILENEQC 247
H+ K + I+ +++P SK + + L+ N T S S+SS V + E
Sbjct: 589 HVLNKEDLIEDLSQP--SK-LEKSLDHSVTSFTNESTYSMKYPGSLSSSVHPENSHKES- 644
Query: 248 SQKGIVDVKCFEESSA-LERSMKPDDRPSPTRK 279
+K ++ V E S+ E ++ P R P+RK
Sbjct: 645 GKKDVLPVSSCESSTFDYEDNIPPVTRQIPSRK 677
Score = 44 (20.5 bits), Expect = 2.1e-233, Sum P(2) = 2.1e-233
Identities = 10/42 (23%), Positives = 25/42 (59%)
Query: 428 IILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDP 469
++ + ++SEL + T+P + NE+ + ++ +EN + + P
Sbjct: 355 MVEVHKDSELSKGHTRPKVEEALINEEAILNL-MENSQTFQP 395
Score = 39 (18.8 bits), Expect = 4.0e-236, Sum P(3) = 4.0e-236
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 420 PEEDRKVGIILIGQESELPEVRTK---PIQMHFVSNEKELFSIFIENVRQWDP 469
PE+ R++G L+ E+ LP + + + K FS +N R P
Sbjct: 1920 PEKPREIGGRLLMVETRLPNDLAEFEGDFSLEGLRLWKTAFSAMTQNPRPGSP 1972
Score = 38 (18.4 bits), Expect = 5.2e-236, Sum P(3) = 5.2e-236
Identities = 11/41 (26%), Positives = 18/41 (43%)
Query: 428 IILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWD 468
+ L+G + P P +H N FS F+E+ + D
Sbjct: 1271 VSLMGSAIDHPLSAPIPTGIHAQQNLSGCFSSFLESKKPVD 1311
Score = 37 (18.1 bits), Expect = 1.7e-256, Sum P(3) = 1.7e-256
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 174 LEVTGDAT-RNVNDIMESFQHIF-PKS-NFIKPIAKPPTSKSV 213
L T D++ R+ + +S F P++ + +KP+ PP+ + +
Sbjct: 1852 LTPTPDSSPRSTSSPSQSKNGSFTPRTAHILKPLMSPPSREEI 1894
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 2225 (788.3 bits), Expect = 2.3e-260, Sum P(3) = 2.3e-260
Identities = 412/757 (54%), Positives = 573/757 (75%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2362 LEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2421
Query: 505 E--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ +E R ++ RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2422 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2481
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2482 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2541
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2542 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2601
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG +E+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2602 DFQSLYPSIVIAYNYCFSTCLGHIENLGKYDEFKFGCTSLRVPPDLLYQIRHDITVSPNG 2661
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
VAFV S+R G+LP+ML+EIL TR MVKQSMK Y+ + AL R+L+ARQLGLKLIANVT+G
Sbjct: 2662 VAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYRQDRALSRMLNARQLGLKLIANVTFG 2721
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YT+ANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G T
Sbjct: 2722 YTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2781
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AK
Sbjct: 2782 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2841
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2842 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLVEGKASIQDFIFAKEY 2901
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG Y+PGACVPAL L R+ + D R+EPRV ERVPYVIV G PGLPLI+L++ P E+L
Sbjct: 2902 RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIVYGTPGLPLIQLIRRPAEVL 2961
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
QD +LRLN+ YYIT+ I+PPL R F L+G V WY+ LPR S + +K TI
Sbjct: 2962 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYQELPRIQKATSSSRSDLEGRKGTI 3021
Query: 1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
SQYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C G
Sbjct: 3022 SQYFTTLHCPVCDGLTQH--GICSQCRSQPQHVAIILNQEIRELERQQEQLVKICRNCTG 3079
Query: 1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
+ C+SL+CPVL++ +++ R+L + Y+ L D
Sbjct: 3080 SFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3116
Score = 237 (88.5 bits), Expect = 2.3e-260, Sum P(3) = 2.3e-260
Identities = 58/186 (31%), Positives = 108/186 (58%)
Query: 341 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2245 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2301
Query: 401 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELP--EVRTK-PI-------- 445
PDP +D + A+FY + + P E+ G+I+I ++ + ++R + P+
Sbjct: 2302 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRCQTPLLIRSGVTG 2361
Query: 446 -QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2362 LEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2421
Query: 505 EVEKRN 510
+ + N
Sbjct: 2422 DDKIEN 2427
Score = 98 (39.6 bits), Expect = 2.3e-260, Sum P(3) = 2.3e-260
Identities = 40/142 (28%), Positives = 61/142 (42%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAA-PVAL 154
+K P SR +V L++ D++ + QEPF SN D+ EI + + +E P L
Sbjct: 1873 LKPLMSPPSREEIVATLLDHDLSEAIYQEPFCSNPSDVPEKPREIGGRLLMVETRLPNDL 1932
Query: 155 LE-EHRCLFSGLSEWRQRVCLEVT----GDATRN----VN-DIMESFQHIFPKSNFIKPI 204
+E E GL W+ G RN VN + S + + K I P
Sbjct: 1933 IEFEGDFSLEGLRLWKTAFSAMTQNPRPGSPLRNGPAVVNKESSNSHKTVEDKKIVIMPC 1992
Query: 205 AKPPTSKSVTRWLERKEAFKRN 226
P+ + V WL+ KE + R+
Sbjct: 1993 RYAPSRQLVQAWLQAKEEYVRS 2014
Score = 42 (19.8 bits), Expect = 1.9e-254, Sum P(3) = 1.9e-254
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 169 RQRVCLEVTGDAT-RNVNDIMESFQHIF-PKS-NFIKPIAKPPTSKSVTRWL 217
R L T D++ R+ + ++S F P++ + +KP+ PP+ + + L
Sbjct: 1838 RNNDVLTPTPDSSPRSTSSPLQSKNGSFTPRTAHILKPLMSPPSREEIVATL 1889
Score = 38 (18.4 bits), Expect = 2.0e-233, Sum P(3) = 2.0e-233
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 420 PEEDRKVGIILIGQESELP 438
PE+ R++G L+ E+ LP
Sbjct: 1911 PEKPREIGGRLLMVETRLP 1929
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 2225 (788.3 bits), Expect = 3.4e-260, Sum P(3) = 3.4e-260
Identities = 412/757 (54%), Positives = 573/757 (75%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2376 LEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2435
Query: 505 E--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ +E R ++ RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2436 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2495
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2496 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2555
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2556 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2615
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG +E+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2616 DFQSLYPSIVIAYNYCFSTCLGHIENLGKYDEFKFGCTSLRVPPDLLYQIRHDITVSPNG 2675
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
VAFV S+R G+LP+ML+EIL TR MVKQSMK Y+ + AL R+L+ARQLGLKLIANVT+G
Sbjct: 2676 VAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYRQDRALSRMLNARQLGLKLIANVTFG 2735
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YT+ANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G T
Sbjct: 2736 YTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2795
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AK
Sbjct: 2796 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2855
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2856 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLVEGKASIQDFIFAKEY 2915
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG Y+PGACVPAL L R+ + D R+EPRV ERVPYVIV G PGLPLI+L++ P E+L
Sbjct: 2916 RGSFSYRPGACVPALELTRKMLAYDRRSEPRVGERVPYVIVYGTPGLPLIQLIRRPAEVL 2975
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTI 1098
QD +LRLN+ YYIT+ I+PPL R F L+G V WY+ LPR S + +K TI
Sbjct: 2976 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYQELPRIQKATSSSRSDLEGRKGTI 3035
Query: 1099 SQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
SQYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C G
Sbjct: 3036 SQYFTTLHCPVCDGLTQH--GICSQCRSQPQHVAIILNQEIRELERQQEQLVKICRNCTG 3093
Query: 1159 RSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
+ C+SL+CPVL++ +++ R+L + Y+ L D
Sbjct: 3094 SFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3130
Score = 237 (88.5 bits), Expect = 3.4e-260, Sum P(3) = 3.4e-260
Identities = 58/186 (31%), Positives = 108/186 (58%)
Query: 341 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2259 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2315
Query: 401 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELP--EVRTK-PI-------- 445
PDP +D + A+FY + + P E+ G+I+I ++ + ++R + P+
Sbjct: 2316 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRCQTPLLIRSGVTG 2375
Query: 446 -QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2376 LEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2435
Query: 505 EVEKRN 510
+ + N
Sbjct: 2436 DDKIEN 2441
Score = 98 (39.6 bits), Expect = 3.4e-260, Sum P(3) = 3.4e-260
Identities = 40/142 (28%), Positives = 61/142 (42%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAA-PVAL 154
+K P SR +V L++ D++ + QEPF SN D+ EI + + +E P L
Sbjct: 1873 LKPLMSPPSREEIVATLLDHDLSEAIYQEPFCSNPSDVPEKPREIGGRLLMVETRLPNDL 1932
Query: 155 LE-EHRCLFSGLSEWRQRVCLEVT----GDATRN----VN-DIMESFQHIFPKSNFIKPI 204
+E E GL W+ G RN VN + S + + K I P
Sbjct: 1933 IEFEGDFSLEGLRLWKTAFSAMTQNPRPGSPLRNGPAVVNKESSNSHKTVEDKKIVIMPC 1992
Query: 205 AKPPTSKSVTRWLERKEAFKRN 226
P+ + V WL+ KE + R+
Sbjct: 1993 RYAPSRQLVQAWLQAKEEYVRS 2014
Score = 42 (19.8 bits), Expect = 2.8e-254, Sum P(3) = 2.8e-254
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 169 RQRVCLEVTGDAT-RNVNDIMESFQHIF-PKS-NFIKPIAKPPTSKSVTRWL 217
R L T D++ R+ + ++S F P++ + +KP+ PP+ + + L
Sbjct: 1838 RNNDVLTPTPDSSPRSTSSPLQSKNGSFTPRTAHILKPLMSPPSREEIVATL 1889
Score = 38 (18.4 bits), Expect = 2.9e-233, Sum P(3) = 2.9e-233
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 420 PEEDRKVGIILIGQESELP 438
PE+ R++G L+ E+ LP
Sbjct: 1911 PEKPREIGGRLLMVETRLP 1929
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 2230 (790.1 bits), Expect = 1.4e-258, Sum P(3) = 1.4e-258
Identities = 415/758 (54%), Positives = 575/758 (75%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L + +SR+
Sbjct: 2374 LEVTYAADEKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQRAAALSIDLCRMISRVP 2433
Query: 505 E--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ +E R ++ RDE + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2434 DDKIENRFAAERDEYGSYTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2493
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2494 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2553
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2554 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2613
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ +T+SP+G
Sbjct: 2614 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQVRHDITVSPNG 2673
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
VAFV S+R G+LP+ML+EIL TR MVKQSMK YK + AL R+L ARQLGLKLIANVT+G
Sbjct: 2674 VAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYKQDRALSRMLDARQLGLKLIANVTFG 2733
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YT+ANFSGRMPC+EVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G T
Sbjct: 2734 YTSANFSGRMPCIEVGDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGAT 2793
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AK
Sbjct: 2794 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2853
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEY
Sbjct: 2854 GIETVRRDSCPAVSKILERSLKLLFETRDISLIKQYVQRQCMKLLEGKASIQDFIFAKEY 2913
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG YKPGACVPAL L R+ + D R+EP+V ERVPYVI+ G PG+PLI+LV+ P E+L
Sbjct: 2914 RGSFSYKPGACVPALELTRKMLTYDRRSEPQVGERVPYVIIYGTPGVPLIQLVRRPVEVL 2973
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERK-KKST 1097
QD +LRLN+ YYIT+ I+PPL R F L+G V WY LPR +H S +E + +K T
Sbjct: 2974 QDPTLRLNATYYITKQILPPLARIFSLIGIDVFSWYHELPR-IHKATSSSRSEPEGRKGT 3032
Query: 1098 ISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCV 1157
ISQYF +++C C+ +TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C
Sbjct: 3033 ISQYFTTLHCPVCDDLTQH--GICSKCRSQPQHVAVILNQEIRELERQQEQLVKICKNCT 3090
Query: 1158 GRSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
G + C+SL+CPVL++ +++ R+L + Y+ L D
Sbjct: 3091 GCFDRHIPCVSLNCPVLFKLSRVNRELSKAPYLRQLLD 3128
Score = 231 (86.4 bits), Expect = 1.4e-258, Sum P(3) = 1.4e-258
Identities = 56/186 (30%), Positives = 108/186 (58%)
Query: 341 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
+ TP++ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2257 VNTPQK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLE 2313
Query: 401 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESEL--PEVRTK-PI-------- 445
PDP +D + A+FY + + P E+ G+I+I ++ + ++R + P+
Sbjct: 2314 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVFSQDIRYQTPLLIRSGITG 2373
Query: 446 -QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L + +SR+
Sbjct: 2374 LEVTYAADEKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQRAAALSIDLCRMISRVP 2433
Query: 505 EVEKRN 510
+ + N
Sbjct: 2434 DDKIEN 2439
Score = 83 (34.3 bits), Expect = 1.4e-258, Sum P(3) = 1.4e-258
Identities = 36/142 (25%), Positives = 58/142 (40%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAAPVALL 155
+K P SR ++ L++ D++ + QEPF SN D+ EI + + +E L
Sbjct: 1878 LKPLMSPPSREEIMATLLDHDLSETIYQEPFCSNPSDVPEKPREIGGRLLMVETRLANDL 1937
Query: 156 EEHRCLFS--GLSEWRQRVCLEVT----GDATRNVNDIMESFQHIFPK-----SNFIKPI 204
E FS GL W+ G R+ ++ PK I P
Sbjct: 1938 AEFEGDFSLEGLRLWKTAFSAMTQNPRPGSPLRSGQGVVNKGSSNSPKMVEDKKIVIMPC 1997
Query: 205 AKPPTSKSVTRWLERKEAFKRN 226
P+ + V WL+ KE ++R+
Sbjct: 1998 KCAPSRQLVQVWLQAKEEYERS 2019
Score = 46 (21.3 bits), Expect = 1.1e-254, Sum P(3) = 1.1e-254
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 188 MESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENE 245
ME ++ + P +F + P +K L K++ +R + +S+ +Q+ NE
Sbjct: 1011 MELYKKLAPLKDFWPKVPDSPATKYPIYPLTPKKSHRRKSKHKSAKKKTGKQQRTNNE 1068
Score = 45 (20.9 bits), Expect = 1.4e-254, Sum P(3) = 1.4e-254
Identities = 14/57 (24%), Positives = 27/57 (47%)
Query: 192 QHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCS 248
Q + P + ++P KP S + +RK A + T+SS + + ++N C+
Sbjct: 812 QKLSPVTYKLQPGNKP----SRLKLNKRKLAGHQETSTKSSETGSTKDNFIQNNPCN 864
Score = 45 (20.9 bits), Expect = 1.4e-254, Sum P(3) = 1.4e-254
Identities = 18/73 (24%), Positives = 34/73 (46%)
Query: 144 FVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDAT-RNVNDIMESFQHIF-PKS-NF 200
F + ++P L + C L R L T D++ R+ + +S F P++ N
Sbjct: 1818 FTAILSSPDGELVDVACEDLELYVSRNNDMLTPTPDSSPRSTSSPSQSKNGSFTPRTANI 1877
Query: 201 IKPIAKPPTSKSV 213
+KP+ PP+ + +
Sbjct: 1878 LKPLMSPPSREEI 1890
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 2285 (809.4 bits), Expect = 2.3e-257, Sum P(3) = 2.3e-257
Identities = 464/886 (52%), Positives = 622/886 (70%)
Query: 335 SFIRKQLE-TPKRRICD-SYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIH 392
SF+R QLE + + R D S+ + T D T +++ L+NL + + ++ +LT++ +E+
Sbjct: 1250 SFLR-QLEGSSQDRQHDLSFGLSHATLDNTFGFKVNLENLQQAKADIDCNHLTIITLEVF 1308
Query: 393 AISRALLKPDPAYDEVKAIFYYL-YTCPPEE--DRKVGIILIG--QE--SELP-EVRTKP 444
+R L+PDP +DE++ +FY + ++ P E+ + G I++ Q+ SE P +
Sbjct: 1309 VSTRGDLQPDPMHDEIRCLFYAIEHSLPDEKLPSKACGYIMVNTVQDLLSEGPFHGIDRD 1368
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
I++ V++E E F + +WD DI GYEIE SWGY+++R L N+ LSR+
Sbjct: 1369 IEVQVVTSEAEAFEALLALCERWDADIYAGYEIEMSSWGYVIDRAKHLCFNIAPLLSRVP 1428
Query: 505 EVEKRN---SSRDEVKNTQLQMP--GRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP 559
+ R+ R++ + ++M GRI++++WRL+R E+ L SYTFEN+MYH+LH+R P
Sbjct: 1429 TQKVRDFVDEDREQFTDLDVEMKLCGRILLDVWRLMRSEIALTSYTFENVMYHILHKRCP 1488
Query: 560 LHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEV 619
H+ K LT W+ + +W+ +E+YL RV G + L++QLD +GRTSEMA+L GIQFYEV
Sbjct: 1489 WHTAKSLTEWFG--SPCTRWIVMEYYLERVRGTLTLLDQLDLLGRTSEMAKLIGIQFYEV 1546
Query: 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 679
LSRGSQFRVES+MLR+++ N V +SPS++ RAHMRAPE L LI+EP+SR Y DP+IVLD
Sbjct: 1547 LSRGSQFRVESMMLRIAKPKNLVPLSPSVQARAHMRAPEYLALIMEPQSRFYADPLIVLD 1606
Query: 680 FQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQK--LTISPS 737
FQSLYPS+IIAYNYCFSTCLGRVEHLG S F FG L VS + L+KL + +T+SP
Sbjct: 1607 FQSLYPSMIIAYNYCFSTCLGRVEHLGGSSPFEFGASQLRVSRQMLQKLLEHDLVTVSPC 1666
Query: 738 GVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTY 797
GV FV + +R GILP+ML EILDTR MVKQSMK +K ++ALQR+LH+RQLGLKL+ANVTY
Sbjct: 1667 GVVFVKREVREGILPRMLTEILDTRQMVKQSMKLHKDSSALQRILHSRQLGLKLMANVTY 1726
Query: 798 GYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGK 857
GYTAANFSGRMP VEVGDSVVSKGRETL++AI+ V N +W+ RVVYGDTDSMFVL PG+
Sbjct: 1727 GYTAANFSGRMPSVEVGDSVVSKGRETLERAIKLVENNEEWKVRVVYGDTDSMFVLVPGR 1786
Query: 858 TKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEA 917
+ EAF IG+EIA KLK EKVYQPC+LQTKKRYVGYMYETADQ++P+YEA
Sbjct: 1787 NRAEAFRIGEEIAKAVTEMNPQPVKLKLEKVYQPCMLQTKKRYVGYMYETADQEQPVYEA 1846
Query: 918 KGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKE 977
KGIETVRRDGCPAV+K+L+K L +LFET+D+S +K YV +QF+K++SGR ++QD+ FAKE
Sbjct: 1847 KGIETVRRDGCPAVAKMLEKVLRILFETQDVSKIKAYVCRQFTKLLSGRANLQDLIFAKE 1906
Query: 978 YRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYEL 1037
+RG GYKP ACVPAL L R+W+ DPR PR ERVP++IV+G PG+ LI+LV+SP+++
Sbjct: 1907 FRGLNGYKPTACVPALELTRKWMQKDPRHVPRRGERVPFIIVNGPPGMQLIRLVRSPHDI 1966
Query: 1038 LQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSV--LNE---- 1091
L + ++N+ YYIT+ IIPPL RC LL+G V W+ +LPRKL + P+V NE
Sbjct: 1967 LANEGHKINAIYYITKAIIPPLNRCLLLIGANVHDWFASLPRKL-LMTPAVGTANELAGA 2025
Query: 1092 RKKKSTISQYFASVNCVC-CNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVN 1150
R KSTISQYF++ +CV C + T+ G+C CL L K +R
Sbjct: 2026 RGAKSTISQYFSTTSCVIDCGRQTK--AGICPDCLKNATTCVVVLSDKTARLERGYQLTR 2083
Query: 1151 KVCTTCVGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLSLCDSH 1196
++C C GR S C SLDCPVLY R+L Q+ + L + H
Sbjct: 2084 QICQACCGRLGSLQCDSLDCPVLYVLEGKRRELQQIEHWNKLLEHH 2129
Score = 195 (73.7 bits), Expect = 2.3e-257, Sum P(3) = 2.3e-257
Identities = 83/354 (23%), Positives = 151/354 (42%)
Query: 104 PISRALVVEELINTDVTNILSQEPFYSNFKDITR-TEITNKFVHLEAAPVALLEEHRCLF 162
P S VV D+ Q+P+YSN D+++ TE+ +H+ + + + +
Sbjct: 1007 PPSYDEVVSGSRKMDIPEYEFQKPYYSNPSDVSKVTEVGFLVLHIPGNKLNDCDPFQSIL 1066
Query: 163 S---GLSEWRQRVCLEVTGDATRNVNDIMESFQHIFPKSN--FIKPIAKPPTSKSVTRWL 217
GL+ WR+R + + G A + + + F I+P PT + WL
Sbjct: 1067 GNDRGLASWRRRQLIAIGGLAMLQRHRGEQKVREYFSTQQRIAIEPAQLAPTWQEAKIWL 1126
Query: 218 ERKEAFK-RNAGTRSS--VSSRVE---QKI---LENEQCSQKGIVDVKCFEESSALERSM 268
+ KE + R +SS + S ++ QKI L+ E+ G D EE S+
Sbjct: 1127 KAKELLRQREEPKKSSDDIDSPIKIKRQKITMMLQAEE-GDGGSGDEDAGEELDC-SLSL 1184
Query: 269 KPDDRPSPTRKNKSTXXXXXXXXXXXXXXXXXXXXXXNKDSIHEAEITHPDCSKSSQIDF 328
P + K T ++D + + SS
Sbjct: 1185 TPLSQAKDKCKATPTSSKARETGKSRLKRGTRLSFIGSQDEEPPSSQSSEQSVSSSAAQA 1244
Query: 329 NPDLFKSFIRKQLE-TPKRRICD-SYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTV 386
D SF+R QLE + + R D S+ + T D T +++ L+NL + + ++ +LT+
Sbjct: 1245 ELDR-SSFLR-QLEGSSQDRQHDLSFGLSHATLDNTFGFKVNLENLQQAKADIDCNHLTI 1302
Query: 387 LAVEIHAISRALLKPDPAYDEVKAIFYYL-YTCPPEE--DRKVGIILIGQESEL 437
+ +E+ +R L+PDP +DE++ +FY + ++ P E+ + G I++ +L
Sbjct: 1303 ITLEVFVSTRGDLQPDPMHDEIRCLFYAIEHSLPDEKLPSKACGYIMVNTVQDL 1356
Score = 39 (18.8 bits), Expect = 6.9e-241, Sum P(3) = 6.9e-241
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 312 EAEITHPDCSKSSQIDFNPDLFKSFIRKQL 341
E E T P S S P+L +SF L
Sbjct: 937 ETETT-PQLSPKSNESNTPELMRSFYEHSL 965
Score = 38 (18.4 bits), Expect = 2.3e-257, Sum P(3) = 2.3e-257
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 48 ESYLFTQNKSYDSPTIVAKQTLLP 71
ES L T +S S ++ QT+LP
Sbjct: 314 ESKLMTLEQSTLSEQTLSDQTILP 337
>UNIPROTKB|F1NQT0 [details] [associations]
symbol:REV3L "DNA polymerase" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 OMA:DGTADEN
GeneTree:ENSGT00550000074640 EMBL:AADN02002055 EMBL:AADN02002056
IPI:IPI00582758 Ensembl:ENSGALT00000024245 Uniprot:F1NQT0
Length = 3100
Score = 2197 (778.4 bits), Expect = 3.2e-256, Sum P(3) = 3.2e-256
Identities = 410/758 (54%), Positives = 569/758 (75%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+++ + ++E+ LF + V+++DPDIL+GYE++ SWGYLL+R L ++L Q +SR+
Sbjct: 2344 LEVSYATDERTLFQEVVNIVKRYDPDILLGYEVQMHSWGYLLQRAAALNVDLCQMISRVP 2403
Query: 505 EVEKRN---SSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ K N + DE + +++ + GRI++N+WR++R+EVNL +YTFEN+ +HVLH+R
Sbjct: 2404 DDNKENRFAAELDEYGSDTMSEINIVGRIILNIWRMMRNEVNLMNYTFENVGFHVLHQRF 2463
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
PL ++++L+ W++++ +Y+W V+HY+ RV G ++L+++LD I RTSEMARLFGIQF
Sbjct: 2464 PLFTFRVLSDWFDNKADVYRWKMVDHYVSRVHGNLQLLQKLDLIDRTSEMARLFGIQFLH 2523
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
VL+RGSQ+RVES+MLR+++ N++ V+PSI+QRA M+AP+ +PLI+EPESR Y++ ++VL
Sbjct: 2524 VLTRGSQYRVESMMLRVAKPMNYIPVTPSIQQRAQMKAPQCVPLIMEPESRFYSNAVLVL 2583
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DFQSLYPS++IAYNYCFSTCLG VE+LG D+F FGC L V L +++ +T+SPSG
Sbjct: 2584 DFQSLYPSIVIAYNYCFSTCLGPVENLGKYDAFKFGCTSLRVPPDLLYQIRHDITVSPSG 2643
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
VAFV S+R G+LP+ML+EIL TR+MVKQSMK YK + A+ R+L ARQLGLK IAN TYG
Sbjct: 2644 VAFVKPSVRKGVLPRMLEEILKTRIMVKQSMKAYKHDKAITRMLEARQLGLKYIANFTYG 2703
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
YTAANFSGRMPC+E+GDS+V K RETL++AI+ VN+T KW VVYGDTDSMFVL G T
Sbjct: 2704 YTAANFSGRMPCIELGDSIVHKARETLERAIKLVNDTKKWGAHVVYGDTDSMFVLLKGAT 2763
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
K+++F+IG+EIA KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AK
Sbjct: 2764 KEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAK 2823
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
GIETVRRD CPAVSKIL+ S+ LLFET+D+S +K+YV+ Q K++ G+ S+QD FAKEY
Sbjct: 2824 GIETVRRDSCPAVSKILECSIKLLFETRDISQIKQYVQNQCMKLLEGKASIQDFIFAKEY 2883
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
RG + YKPG+CVPAL + R+ + D R+EPRV ERVPYVIV G PGLPLI+LV+ P E+L
Sbjct: 2884 RGSSAYKPGSCVPALEITRRMLAYDRRSEPRVGERVPYVIVYGMPGLPLIQLVRRPTEVL 2943
Query: 1039 QDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERK-KKST 1097
QD SLRLN+ YYIT+ I+PPL R F L+G V WY LPR + + +E + +K T
Sbjct: 2944 QDPSLRLNATYYITKQILPPLARVFSLIGIDVFSWYHELPR-IQKTASTARSELEGRKGT 3002
Query: 1098 ISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCV 1157
ISQYF +++C C+++TQ G+C C +Q Q + L +I+ +R QDQ+ K+C C
Sbjct: 3003 ISQYFTTLHCPVCDELTQY--GICTKCRSQPQHVAVILNQEIRELERKQDQLVKICKNCT 3060
Query: 1158 GRSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
G C+SL+CPVL++ ++++R+L + Y+ L D
Sbjct: 3061 GCFDRQIPCVSLNCPVLFKLSRVSRELLKAPYLRQLLD 3098
Score = 247 (92.0 bits), Expect = 3.2e-256, Sum P(3) = 3.2e-256
Identities = 61/186 (32%), Positives = 105/186 (56%)
Query: 341 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 400
L PKR ++ I+ + + T +++ + NL E S E +LT++++E+HA +R L+
Sbjct: 2227 LGAPKR---ETSQIEGPSLNNTYGFKVSVQNLQEAKSLHEVQHLTLISMELHARTRRDLE 2283
Query: 401 PDPAYDEVKAIFYYLY--TCPPEEDRK--VGIILI---------GQESELPEVRTKPI-- 445
PDP +D + A+FY + T P D+K G I+I G + P + I
Sbjct: 2284 PDPEFDPICALFYCVSSDTALPNTDKKEITGAIVIDSDRTLSSQGSRDQAPLLTRSGITG 2343
Query: 446 -QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
++ + ++E+ LF + V+++DPDIL+GYE++ SWGYLL+R L ++L Q +SR+
Sbjct: 2344 LEVSYATDERTLFQEVVNIVKRYDPDILLGYEVQMHSWGYLLQRAAALNVDLCQMISRVP 2403
Query: 505 EVEKRN 510
+ K N
Sbjct: 2404 DDNKEN 2409
Score = 79 (32.9 bits), Expect = 3.2e-256, Sum P(3) = 3.2e-256
Identities = 37/140 (26%), Positives = 54/140 (38%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAA-PVAL 154
+K P SR ++ L++ D+T + QEPF SN D EI + + +E P L
Sbjct: 1843 LKPLMSPPSREEIMATLLDHDLTETVYQEPFCSNPSDAPEKPREIGGRLLTVETRLPNDL 1902
Query: 155 LE-EHRCLFSGLSEWRQRVCLEVTGDAT-------RNVNDIMESFQHIFPKSN--FIKPI 204
LE E GL W+ G + + E H K I P
Sbjct: 1903 LEFEGDFSLEGLRLWKTAFSAMTEGPRPGSPPRYDHSAANKKEGNSHKTSKDKKIVIMPC 1962
Query: 205 AKPPTSKSVTRWLERKEAFK 224
P+ + V WL KE ++
Sbjct: 1963 KCAPSQQQVQIWLHAKEEYE 1982
Score = 40 (19.1 bits), Expect = 4.3e-252, Sum P(3) = 4.3e-252
Identities = 12/48 (25%), Positives = 25/48 (52%)
Query: 169 RQRVCLEVTGDAT-RNVNDIMESFQHIF-PKS-NFIKPIAKPPTSKSV 213
R L T D++ R+ + +S F P++ + +KP+ PP+ + +
Sbjct: 1808 RNNEALTPTPDSSPRSTSSPSQSKNGSFTPRTAHILKPLMSPPSREEI 1855
Score = 39 (18.8 bits), Expect = 3.9e-230, Sum P(3) = 3.9e-230
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 420 PEEDRKVGIILIGQESELP 438
PE+ R++G L+ E+ LP
Sbjct: 1881 PEKPREIGGRLLTVETRLP 1899
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 2231 (790.4 bits), Expect = 6.0e-241, Sum P(5) = 6.0e-241
Identities = 417/759 (54%), Positives = 566/759 (74%)
Query: 449 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK 508
+ +EKELF +R++DPDIL+GYE++ SWGYLL+R LG+NL Q+LSR+ +
Sbjct: 2199 YTCDEKELFEEVSNIIRKYDPDILVGYEVQMHSWGYLLQRASTLGVNLCQQLSRVPGDSQ 2258
Query: 509 RNS---SRDEV---KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 562
+N +DE T++ + GRI++N+WR+++ E L +YTFEN+ +H+LH+R PL+S
Sbjct: 2259 QNHFIPEKDEYGAETMTEIHITGRIILNIWRIMKTEAALNNYTFENVAFHLLHQRYPLYS 2318
Query: 563 WKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 622
+ L+ W++ THL++W ++HY+ RV G ++L++Q D IGRTSE+AR+FGIQFY VL+R
Sbjct: 2319 HRTLSDWFD--THLHRWKVMDHYVSRVCGTVQLLQQQDIIGRTSELARVFGIQFYHVLTR 2376
Query: 623 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 682
GSQ+RVES+MLR+++ N++ V+PS +QRA RA + +PL++EPESR Y++ +IVLDFQS
Sbjct: 2377 GSQYRVESMMLRVAKPMNYIPVTPSTQQRAQQRAAQCIPLVMEPESRFYSNSVIVLDFQS 2436
Query: 683 LYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFV 742
LYPS++IAYNYC+STCLG +E+LG D F FGC L V L +L+ +T+SP+GVAFV
Sbjct: 2437 LYPSIVIAYNYCYSTCLGHIENLGTYDEFKFGCASLRVPPDLLYQLRNDITVSPNGVAFV 2496
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
S+R G+LP+ML+EIL TR+MVKQSMK Y+++ AL R+L ARQLGLKLIANVT+GYT+A
Sbjct: 2497 KSSVRRGVLPRMLEEILKTRIMVKQSMKAYRNDKALSRLLDARQLGLKLIANVTFGYTSA 2556
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
NFSGRMPCVEVGDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G TK++A
Sbjct: 2557 NFSGRMPCVEVGDSIVHKARETLERAIKMVNDTKKWGARVVYGDTDSMFVLLKGATKEQA 2616
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIET 922
F+IG EIA KLKFEKVY PCILQTKKRYVGYMYE+ DQ+ P+++AKGIET
Sbjct: 2617 FKIGNEIAEAVTATNPKPIKLKFEKVYLPCILQTKKRYVGYMYESVDQENPVFDAKGIET 2676
Query: 923 VRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQA 982
VRRDGCP VSKIL++SL LLFE++D+S VK+YV++Q K++ G+ S+QD+TFAKEYRG
Sbjct: 2677 VRRDGCPGVSKILERSLKLLFESRDISQVKQYVQRQCVKVVEGKASMQDLTFAKEYRGSG 2736
Query: 983 GYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSS 1042
Y+PGACVPAL L R+ + D R EPRV ERVPYVIV G+PG+PLI+LV+ P E+LQD S
Sbjct: 2737 SYRPGACVPALELTRRMMAFDRRLEPRVGERVPYVIVYGSPGVPLIQLVRRPLEVLQDPS 2796
Query: 1043 LRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPR--KLHVYLPSVLNER-KKKSTIS 1099
LRLN+ YYIT+ I+PPL R F L+G V WY LPR + + S E KK TIS
Sbjct: 2797 LRLNATYYITKQILPPLARIFNLIGVDVFSWYHELPRVQRAWSFTSSGRGEEGTKKGTIS 2856
Query: 1100 QYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGR 1159
QYF +++C C+++TQ GVC C + Q + L+ ++ W+ QDQ+ K+C +C G
Sbjct: 2857 QYFTTLHCPVCDELTQ--LGVCARCRAEPQCVAVHLHQDLRLWESQQDQLLKICRSCSGS 2914
Query: 1160 STSN-DCISLDCPVLYRKTQITRDLDQLSYVLSLCDSHL 1197
+ C+SLDCP+LY+ +++ R+L + Y+ L + L
Sbjct: 2915 AERQVPCVSLDCPILYKLSRVNRNLSRGPYLRQLVEQFL 2953
Score = 1993 (706.6 bits), Expect = 1.2e-209, Sum P(2) = 1.2e-209
Identities = 405/819 (49%), Positives = 554/819 (67%)
Query: 365 YQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEED- 423
+++ + NL E + E +LT++++E+HA +R L+PDP +D + A+FY L + D
Sbjct: 2099 FKVSMQNLQEAKALHEVQHLTLMSMELHARTRRNLEPDPEFDPICALFYCLSSDVLLHDS 2158
Query: 424 ---RKVGIILIGQES--ELPEVRTK-P---------IQMHFVSNEKELFSIFIENVRQWD 468
R G I+I +ES R+ P + + + +EKELF +R++D
Sbjct: 2159 GTTRIEGAIVIDKESCTSAQASRSSTPFLFRCGVTGLPVTYTCDEKELFEEVSNIIRKYD 2218
Query: 469 PDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIV 528
PDIL+GYE++ SWGYLL+R LG+NL Q+LSR+ ++N E + I
Sbjct: 2219 PDILVGYEVQMHSWGYLLQRASTLGVNLCQQLSRVPGDSQQNHFIPEKDEYGAETMTEIH 2278
Query: 529 INLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRT-------HLYKWMT 581
I R++ + + E + + E + H + HRT HL++W
Sbjct: 2279 IT-GRIILNIWRIMKT--EAALNNYTFENVAFHLLHQRYPLYSHRTLSDWFDTHLHRWKV 2335
Query: 582 VEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNF 641
++HY+ RV G ++L++Q D IGRTSE+AR+FGIQFY VL+RGSQ+RVES+MLR+++ N+
Sbjct: 2336 MDHYVSRVCGTVQLLQQQDIIGRTSELARVFGIQFYHVLTRGSQYRVESMMLRVAKPMNY 2395
Query: 642 VAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 701
+ V+PS +QRA RA + +PL++EPESR Y++ +IVLDFQSLYPS++IAYNYC+STCLG
Sbjct: 2396 IPVTPSTQQRAQQRAAQCIPLVMEPESRFYSNSVIVLDFQSLYPSIVIAYNYCYSTCLGH 2455
Query: 702 VEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDT 761
+E+LG D F FGC L V L +L+ +T+SP+GVAFV S+R G+LP+ML+EIL T
Sbjct: 2456 IENLGTYDEFKFGCASLRVPPDLLYQLRNDITVSPNGVAFVKSSVRRGVLPRMLEEILKT 2515
Query: 762 RLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKG 821
R+MVKQSMK Y+++ AL R+L ARQLGLKLIANVT+GYT+ANFSGRMPCVEVGDS+V K
Sbjct: 2516 RIMVKQSMKAYRNDKALSRLLDARQLGLKLIANVTFGYTSANFSGRMPCVEVGDSIVHKA 2575
Query: 822 RETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXX 881
RETL++AI+ VN+T KW RVVYGDTDSMFVL G TK++AF+IG EIA
Sbjct: 2576 RETLERAIKMVNDTKKWGARVVYGDTDSMFVLLKGATKEQAFKIGNEIAEAVTATNPKPI 2635
Query: 882 KLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCL 941
KLKFEKVY PCILQTKKRYVGYMYE+ DQ+ P+++AKGIETVRRDGCP VSKIL++SL L
Sbjct: 2636 KLKFEKVYLPCILQTKKRYVGYMYESVDQENPVFDAKGIETVRRDGCPGVSKILERSLKL 2695
Query: 942 LFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVL 1001
LFE++D+S VK+YV++Q K++ G+ S+QD+TFAKEYRG Y+PGACVPAL L R+ +
Sbjct: 2696 LFESRDISQVKQYVQRQCVKVVEGKASMQDLTFAKEYRGSGSYRPGACVPALELTRRMMA 2755
Query: 1002 TDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
D R EPRV ERVPYVIV G+PG+PLI+LV+ P E+LQD SLRLN+ YYIT+ I+PPL R
Sbjct: 2756 FDRRLEPRVGERVPYVIVYGSPGVPLIQLVRRPLEVLQDPSLRLNATYYITKQILPPLAR 2815
Query: 1062 CFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASV-NCVCCNQMTQNNK-G 1119
F L+G V WY LPR + + R ++ T + + C + + G
Sbjct: 2816 IFNLIGVDVFSWYHELPRVQRAW-SFTSSGRGEEGTKKGTISQYFTTLHCPVCDELTQLG 2874
Query: 1120 VCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG 1158
VC C + Q + L+ ++ W+ QDQ+ K+C +C G
Sbjct: 2875 VCARCRAEPQCVAVHLHQDLRLWESQQDQLLKICRSCSG 2913
Score = 73 (30.8 bits), Expect = 9.0e-239, Sum P(3) = 9.0e-239
Identities = 33/138 (23%), Positives = 59/138 (42%)
Query: 98 IKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRT--EITNKFVHLEAAPVA-L 154
+K P +R ++ L++ D + QEPFYS+ D+ E+ + + LE + L
Sbjct: 1715 LKPLMSPPAREEILANLMDLDFSEATKQEPFYSDPSDVPLKPREVGGRKLILETRQASRL 1774
Query: 155 LEEHRCLF-SGLSEWRQRVCLEVTGDATRNVNDIMES--FQHIFPKSN-----FIKPIAK 206
+E H L +GL W+ +T A+ S ++ P S I P
Sbjct: 1775 VEFHGDLSQNGLQFWKVAFSA-MTNQASAPTQGCKSSKLIKNQSPSSVSDPKVIILPCKC 1833
Query: 207 PPTSKSVTRWLERKEAFK 224
P+ + V W + K+ ++
Sbjct: 1834 APSREQVQLWAQAKKQYE 1851
Score = 40 (19.1 bits), Expect = 6.0e-241, Sum P(5) = 6.0e-241
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 236 RVEQKILENE-QCSQKGIVDVKCFEESSALERSMKPDDRPS 275
RV+ + ENE +Q G ++ F + S + PD PS
Sbjct: 313 RVKDILRENEFDMTQAGS-EMDSFPDLSLYSTVLSPDRLPS 352
Score = 39 (18.8 bits), Expect = 6.0e-241, Sum P(5) = 6.0e-241
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 323 SSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQM 367
+SQ+D + D K R + + + D AI +M ++ Q+
Sbjct: 355 ASQVDLHQDAVKDTKRDSRKDDEVAVVDEEAILSMLENSQSFLQL 399
Score = 38 (18.4 bits), Expect = 6.0e-241, Sum P(5) = 6.0e-241
Identities = 7/15 (46%), Positives = 11/15 (73%)
Query: 504 TEVEKRNSSRDEVKN 518
T V++RNS+ DE +
Sbjct: 2021 TPVQRRNSTDDEASS 2035
Score = 38 (18.4 bits), Expect = 6.0e-241, Sum P(5) = 6.0e-241
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 417 TCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEK 454
T E RK + L ++ L + R P++ H + E+
Sbjct: 790 TLDQPEQRKSRLKLTKKKPTLDQKRELPVKTHSPTKEE 827
Score = 37 (18.1 bits), Expect = 1.3e-237, Sum P(4) = 1.3e-237
Identities = 33/145 (22%), Positives = 58/145 (40%)
Query: 112 EELINTDVTNILSQEPFYSNFKDITRTEITNKFVH--LEAAPVALLEEHRCLFSGLSEWR 169
+E+ D ILS +F +++T + E A V LLE G +
Sbjct: 376 DEVAVVDEEAILSMLENSQSFLQLSQTSSQSAIFDGSQEQAMVDLLEA--LANDGFGDKS 433
Query: 170 QR-VCLEVTGDATRNVN-DIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNA 227
+ V ++TG A+ N D E+ + K + + I + R+ F +
Sbjct: 434 SKAVTQQLTGIASCVYNSDDEEAGPELEKKESELSKIMSQRWDSDIPEPSARQRLFMK-- 491
Query: 228 GTRSSVSSRVEQKILENEQCSQKGI 252
++ SS EQ+ +E+ + KGI
Sbjct: 492 ---ANESSSEEQQASSDEEGNWKGI 513
>UNIPROTKB|I3L6U8 [details] [associations]
symbol:LOC100737059 "DNA polymerase" species:9823 "Sus
scrofa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GeneTree:ENSGT00550000074640 EMBL:FP102400 RefSeq:XP_003480350.1
Ensembl:ENSSSCT00000026193 GeneID:100737059 KEGG:ssc:100737059
OMA:KATISQY Uniprot:I3L6U8
Length = 721
Score = 2170 (768.9 bits), Expect = 8.3e-225, P = 8.3e-225
Identities = 405/722 (56%), Positives = 551/722 (76%)
Query: 481 SWGYLLERGYVLGLNLNQELSRITE--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRL 534
SWGYLL+R L ++L Q +SR+ + +E R ++ RD+ + +++ + GRI +NLWR+
Sbjct: 3 SWGYLLQRAAALSVDLCQMISRVPDDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRI 62
Query: 535 LRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIR 594
+R+EV L +YTFEN+ +HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV G ++
Sbjct: 63 MRNEVALNNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQ 122
Query: 595 LIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHM 654
++EQLD IG+TSEMARLFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ M
Sbjct: 123 MLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQM 182
Query: 655 RAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFG 714
RAP+ +PLI+EPESR Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FG
Sbjct: 183 RAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKHDEFKFG 242
Query: 715 CIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKS 774
C L V L +++ +T+SP+G+AFV S+R G+LP+ML+EIL TRLMVKQSMK YK
Sbjct: 243 CTSLRVPPDLLYQIRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQ 302
Query: 775 NAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNN 834
+ AL R+L ARQLGLKLIANVT+GYTAANFSGRMPC+EVGDS+V K RETL++AI+ VN+
Sbjct: 303 DRALSRMLEARQLGLKLIANVTFGYTAANFSGRMPCIEVGDSIVHKARETLERAIKLVND 362
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
T KW RVVYGDTDSMFVL G TK+++F+IG+EIA KLKFEKVY PC+L
Sbjct: 363 TKKWGARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAVTATNPKPVKLKFEKVYLPCVL 422
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
QTKKRYVGYMYET DQ P+++AKGIETVRRD CPAVSKIL++SL LLFET+D+S++K+Y
Sbjct: 423 QTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKLLFETRDISLIKQY 482
Query: 955 VEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERV 1014
V++Q K++ G+ S+QD FAKEYRG A YKPGACVPAL L R+ + D R+EPRV ERV
Sbjct: 483 VQRQCLKLLEGKASIQDFIFAKEYRGSASYKPGACVPALELTRKMLTHDRRSEPRVGERV 542
Query: 1015 PYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWY 1074
PYVI+ G PG+PLI+LV+ P E++QD +LRLN+ YYIT+ I+PPL R F L+G V WY
Sbjct: 543 PYVIIYGTPGVPLIQLVRRPVEVMQDPTLRLNATYYITKQILPPLARIFSLIGIDVFNWY 602
Query: 1075 KNLPRKLHVYLPSVLNERK-KKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGT 1133
LPRK S +E + +K TISQYF +++C C+ +TQ+ G+C C +Q Q +
Sbjct: 603 HELPRKA---TSSSRSEHEGRKGTISQYFTTLHCPVCDDLTQH--GICTKCRSQPQHVAV 657
Query: 1134 CLYYKIQAWQRSQDQVNKVCTTCVGRSTSN-DCISLDCPVLYRKTQITRDLDQLSYVLSL 1192
L +I+ +R Q+Q+ K+C C G + C+SL+CPVLY+ +++ R+L + Y+ L
Sbjct: 658 ILNQEIRELERQQEQLVKICRNCTGCFDRHIPCVSLNCPVLYKLSRVNRELSKAPYLRQL 717
Query: 1193 CD 1194
D
Sbjct: 718 LD 719
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 1566 (556.3 bits), Expect = 1.6e-176, Sum P(4) = 1.6e-176
Identities = 333/748 (44%), Positives = 466/748 (62%)
Query: 354 IDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFY 413
I+ TP ++ H E Y++ +++EIH +R L PDP DEVK IF+
Sbjct: 837 IEGATPKNKHGFRYSQKQKTTSVQH-EVAYMSTMSIEIHVNTRGKLVPDPEKDEVKCIFW 895
Query: 414 YLYTCPPEEDR--------KVGIILIGQESELPEVRTKPIQMHFV--SNEKELFSIFIEN 463
+ + + + G++++ +E L E I+ + ++E +L +E
Sbjct: 896 CVRSDDKSNEASSQAPDGLQSGVVVLSEEGTLAERIKHQIKGELLEETSELDLMVRMVEI 955
Query: 464 VRQWDPDILIGYEIETLSWGYLLERGYVL-GLNLNQELSRITEVEKRNSSRDEVK---NT 519
VR DPDIL GYE+ SWGYL+ER + NL E SR+ +D + NT
Sbjct: 956 VRTHDPDILTGYEVHGGSWGYLIERARCMYDYNLCDEFSRMKSQSHGRYGKDADRWGFNT 1015
Query: 520 Q--LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLY 577
+++ GR +IN+WR +R E+NL YT EN+++H+LH RIP +SW+ LT W+ H
Sbjct: 1016 TSTIRVTGRHMINIWRAMRGELNLLQYTMENVVWHLLHRRIPHYSWQTLTTWYGSGRHGD 1075
Query: 578 KWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSR 637
+ +Y R I ++E+ I RTSE ARL G+ F+ V SRGSQF+VESIM R+++
Sbjct: 1076 LDKLLRYYQTRTRLDIEILEENGLISRTSEQARLLGVDFFSVFSRGSQFKVESIMFRIAK 1135
Query: 638 LNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
NF+ VSPS KQ A E LPL++EP+S Y P++VLDFQSLYPSV+IAYNYC+ST
Sbjct: 1136 PENFMLVSPSRKQVGGQNALECLPLVMEPQSAFYNSPVLVLDFQSLYPSVMIAYNYCYST 1195
Query: 698 CLGR-VEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQ 756
LGR V+ G + G + R L+ LQ+ + I+P+GV + IR +L KML
Sbjct: 1196 FLGRIVDWRGTNK---MGFAEYRRRKRLLELLQEHINIAPNGVMYTKPEIRKSLLAKMLT 1252
Query: 757 EILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDS 816
EIL+TR+MVK MK+ K + LQ++L+ RQL LKL+ANVTYGYT+A+FSGR+PC E+ DS
Sbjct: 1253 EILETRVMVKSGMKQDKDDKTLQQLLNNRQLALKLLANVTYGYTSASFSGRLPCSEIADS 1312
Query: 817 VVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXX 876
+V GRETL++AI +++ +W VVYGDTDS+F+ G+TK++AFEIG E+A
Sbjct: 1313 IVQTGRETLERAIAFIHSVPRWGAEVVYGDTDSLFIHLKGRTKEQAFEIGNEMAKAITDM 1372
Query: 877 XXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILK 936
KLKFEKVY PC+L KKRYVGY YE DQ P ++AKGIETVRRDG PA KI +
Sbjct: 1373 NPRPMKLKFEKVYLPCVLLAKKRYVGYKYEHVDQQVPDFDAKGIETVRRDGTPAEQKIEE 1432
Query: 937 KSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYR-GQAGYKPGA--CVPAL 993
K+L LLFET DLS +KEY ++Q +KI+ G++S+QD FAKE + G + G P
Sbjct: 1433 KALRLLFETADLSQIKEYFQRQCNKIMRGQVSIQDFCFAKEVKLGTYSDRNGVGPAPPGA 1492
Query: 994 SLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSS--LRLNSEYYI 1051
++ + +L DPRAEP+ ERV YV+V+GAPG L P ++L + LRL+++YYI
Sbjct: 1493 LISTKKMLADPRAEPQYGERVLYVVVTGAPGARLADRCVPPEDMLSPAGAHLRLDADYYI 1552
Query: 1052 TRVIIPPLERCFLLLGTPVLPWYKNLPR 1079
++ +IPPLER F L+G + WY LP+
Sbjct: 1553 SKNLIPPLERIFNLVGAHIRGWYDELPK 1580
Score = 82 (33.9 bits), Expect = 1.6e-176, Sum P(4) = 1.6e-176
Identities = 24/80 (30%), Positives = 37/80 (46%)
Query: 1116 NNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSN-----DCISLDC 1170
N+ VC C Q L+ ++ ++ +V VC +C G + + DC S DC
Sbjct: 1682 NDVVVCGRCTRHAQESLLKLHSRLAHERKRFSEVADVCRSCAGLAPGDVASVHDCDSKDC 1741
Query: 1171 PVLY-RKTQITRDLDQLSYV 1189
PV Y R Q T+ ++S V
Sbjct: 1742 PVFYTRVKQATKLRTEMSIV 1761
Score = 64 (27.6 bits), Expect = 1.6e-176, Sum P(4) = 1.6e-176
Identities = 16/44 (36%), Positives = 23/44 (52%)
Query: 207 PPTSKSVTRWLERKEAFKRNAGTR-SSVSSRVEQKILENEQCSQ 249
PPT + V+ W E KE K+ +G+R S + + L Q SQ
Sbjct: 793 PPTFEEVSGWWEEKEIKKKESGSRPKSHPASPQSTQLARRQLSQ 836
Score = 52 (23.4 bits), Expect = 1.6e-176, Sum P(4) = 1.6e-176
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 1091 ERKKKSTISQYFASVNCVCCN 1111
++ KK T+ Y +NC CN
Sbjct: 1609 QKAKKVTLESYLQVMNCAVCN 1629
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 1673 (594.0 bits), Expect = 3.6e-174, Sum P(2) = 3.6e-174
Identities = 356/823 (43%), Positives = 509/823 (61%)
Query: 380 ENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTC--PPEEDRKVGIILIGQ---- 433
+ Y++ +++E+H +R +L P+P DE+ A F+ + + P EED + ++ +G
Sbjct: 834 QTQYMSTMSLEVHVNTRGVLLPNPEEDEIAAFFWCVNSEDEPQEEDDSLSVVNMGVVFQG 893
Query: 434 ESELPEVR-TKPIQMH--FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGY 490
E E PE + +K ++ S E +L + ++ VR DPDI+ GYE+ SWG+++ER
Sbjct: 894 EEEYPESKISKALRFECEHESTELDLINRLVDIVRLHDPDIITGYEVHNSSWGFIIERAR 953
Query: 491 V-LGLNLNQELSRITEVEKRNSSRDEVK-----NTQLQMPGRIVINLWRLLRHEVNLQSY 544
+L ELSR+ ++ K + +++ GR +IN+WR +R E+NL Y
Sbjct: 954 KKYDFDLCDELSRVKSHAHGRFGKEADKWGFDHTSSIRITGRHIINIWRAMRSEMNLLQY 1013
Query: 545 TFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGR 604
T EN+++H+LH RIP +S++ LT W++ + +Y RV I ++ + I R
Sbjct: 1014 TMENVVFHLLHRRIPHYSFRDLTAWYQSDKPRDFMKVINYYTSRVQMNIEILNANELIPR 1073
Query: 605 TSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLIL 664
TSE ARL GI FY V SRGSQF+VES+M R+++ NF+ VSPS KQ A E LPL++
Sbjct: 1074 TSEQARLLGIDFYSVFSRGSQFKVESLMFRIAKPENFILVSPSRKQVGQQNALECLPLVM 1133
Query: 665 EPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRS 724
EP+S YT P+IVLDFQSLYPS++IAYNYC+ST LGRV+ + F +D N R
Sbjct: 1134 EPQSDFYTSPLIVLDFQSLYPSIMIAYNYCYSTFLGRVQSWRGRNKMGF--LDYNRPPRL 1191
Query: 725 LKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHA 784
L+ L+ + I+P+G+ + +R +L KML EIL+TR+MVK MK K + ALQR+L+
Sbjct: 1192 LELLKDHINIAPNGMIYARSEVRKSLLAKMLTEILETRVMVKTGMKVDKDDRALQRLLNN 1251
Query: 785 RQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVY 844
RQL LKLIANVTYGYT+A+FSGRMPC E+ DS+V GRETL+KAI +++ +W VVY
Sbjct: 1252 RQLALKLIANVTYGYTSASFSGRMPCSEIADSIVQSGRETLEKAIAFIHSVERWGAEVVY 1311
Query: 845 GDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYM 904
GDTDS+FV G+T+ +AF+IG+EIA KLKFEKVY PC+L KKRYVG+
Sbjct: 1312 GDTDSLFVYLKGRTRDQAFDIGEEIAQAVTNMNPHPVKLKFEKVYHPCVLLAKKRYVGFK 1371
Query: 905 YETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIIS 964
YE +Q +P ++AKGIETVRRDG PA KI +K+L LLF T DLS VK Y + Q +KI+
Sbjct: 1372 YEHRNQKEPEFDAKGIETVRRDGTPAEQKIEEKALKLLFRTADLSQVKSYFQSQCTKIMQ 1431
Query: 965 GRISVQDMTFAKEYRGQAGYKPGACVPALSL-ARQWVLTDPRAEPRVSERVPYVIVSGAP 1023
GR+SVQD FA+ + Y +PA +L + + +L DPRAEP+ ERVPYV+V+GAP
Sbjct: 1432 GRVSVQDFCFARAVK-LGTYSENGTLPAGALISTKKMLEDPRAEPQYGERVPYVVVTGAP 1490
Query: 1024 GLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHV 1083
G LI P LLQD+ L L++EYYIT+ IIPPLER F L+G V WY +P K+H
Sbjct: 1491 GSRLIDRCVPPETLLQDAQLDLDAEYYITKNIIPPLERIFNLVGANVRQWYDEMP-KVHR 1549
Query: 1084 Y-----LPSVLNERKKKSTISQYFASVNCVCCNQMTQNNK-GVCDACLNQTQLLGTCLYY 1137
S+ + T+ Y + +CV C + + VC C+ Q + L
Sbjct: 1550 IRRVEGTSSLAGGKSSIRTLESYMKASSCVVCKAKLYDAEIPVCSDCVRQPHVSLLELVS 1609
Query: 1138 KIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQ 1178
+ + ++ + ++C +C+ ++ C SLDCPV Y +T+
Sbjct: 1610 RQRHAEQRVATLERICRSCMDVPFGDEVKCDSLDCPVFYARTR 1652
Score = 41 (19.5 bits), Expect = 3.6e-174, Sum P(2) = 3.6e-174
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 352 YAIDAMTPDTTGDY 365
Y+IDA PD DY
Sbjct: 692 YSIDADVPDRPRDY 705
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 1562 (554.9 bits), Expect = 8.3e-171, Sum P(3) = 8.3e-171
Identities = 330/718 (45%), Positives = 461/718 (64%)
Query: 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLY--------TCPPEEDRKVGIILIGQE 434
Y++ +++E+H +R L PDP DEV+ +F+YL T P++ + GII+ ++
Sbjct: 928 YMSAMSLEVHVNTRGKLVPDPEEDEVQCVFWYLRSEVNALRGTQTPDDTAR-GIIVFSED 986
Query: 435 SELPEVRTKPIQMHFVSNEKELFSI--FIENVRQWDPDILIGYEIETLSWGYLLERGYV- 491
S L + K + V EL + +E VR DPDI GYE+ SWGYL+ER +
Sbjct: 987 SLLADRIRKHTSVPVVQETTELDMMVRMVEIVRNHDPDIFTGYEVHGSSWGYLIERARIK 1046
Query: 492 LGLNLNQELSRITEVEKRNSSRDEVK---NT--QLQMPGRIVINLWRLLRHEVNLQSYTF 546
L+L E SR+ +D + NT +++ GR +IN+WR +R E+NL YT
Sbjct: 1047 YELDLCDEFSRMKSQSNGRIGKDADRWGFNTTSSIRITGRHMINIWRAMRGELNLLQYTM 1106
Query: 547 ENIMYHVLHERIPLHSWKLLTCWW--EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGR 604
EN+++H+LH RIP +SWK L+ W+ + L K + +YL R I ++E+ + I R
Sbjct: 1107 ENVVWHLLHRRIPHYSWKTLSDWYLSDRPKDLDK--VLRYYLTRTRLDIEILEKNELIPR 1164
Query: 605 TSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLIL 664
TSE ARL G+ F+ V SRGSQF+VESIM R+++ NF+ SPS KQ A E LPL++
Sbjct: 1165 TSEQARLLGVDFFSVFSRGSQFKVESIMFRIAKPENFLLPSPSRKQVGAQNALECLPLVM 1224
Query: 665 EPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRS 724
EP+S Y+ P++VLDFQSLYPSV+IAYNYC+ST LGR+ + G +D
Sbjct: 1225 EPQSAFYSSPLLVLDFQSLYPSVMIAYNYCYSTFLGRI--VSWRGRNKMGFMDYKRQEGL 1282
Query: 725 LKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHA 784
L L+ + I+P+G+ + IR +L KML EIL+TR+MVK MK+ K + A+Q++L+
Sbjct: 1283 LSLLKDYINIAPNGMMYTKPHIRKSLLAKMLTEILETRIMVKSGMKQDKDDRAIQQLLNN 1342
Query: 785 RQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVY 844
RQL LKL+ANVTYGYT+A+FSGRMPC E+ DS+V GRETL++AI +++ KW VVY
Sbjct: 1343 RQLALKLLANVTYGYTSASFSGRMPCSEIADSIVQTGRETLERAIAFIHSVQKWDADVVY 1402
Query: 845 GDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYM 904
GDTDS+FV G+T+++AFEIG+EIA KLKFEKVY PC+L KKRYVGY
Sbjct: 1403 GDTDSLFVSLKGRTREQAFEIGQEIADAVTKLNPRPVKLKFEKVYHPCVLLAKKRYVGYK 1462
Query: 905 YETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIIS 964
YE+ DQ P+++AKGIETVRRDG PA +I +K+L +LFET DLS VK Y ++Q KI+
Sbjct: 1463 YESRDQTVPVFDAKGIETVRRDGTPAEQRIEEKALKILFETADLSQVKSYFQEQCHKIMR 1522
Query: 965 GRISVQDMTFAKEYR-GQAGYKP-GACVPALSL-ARQWVLTDPRAEPRVSERVPYVIVSG 1021
G +SVQD FA+E + G G PA +L A + + D RAEP+ ERVPYV+++G
Sbjct: 1523 GAVSVQDFCFAREVKLGTYSTSGRGGPAPAGALIATKKMKEDARAEPQYGERVPYVVMAG 1582
Query: 1022 APGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPR 1079
APG+ L+ P ELL ++ L+++YYI + IIPPLER F L+G V WY+ +P+
Sbjct: 1583 APGMRLVDRCVEPEELLNNAHATLDADYYINKNIIPPLERIFNLVGANVRTWYEEMPK 1640
Score = 90 (36.7 bits), Expect = 8.3e-171, Sum P(3) = 8.3e-171
Identities = 18/61 (29%), Positives = 31/61 (50%)
Query: 1120 VCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKT 1177
+C C + L + K+ ++S ++ KVC +C G + S + C S DCPV Y +
Sbjct: 1759 LCHRCASDPPTLMVDMQAKVNRAEKSYVEIMKVCQSCAGFALSEEVPCDSKDCPVFYSRV 1818
Query: 1178 Q 1178
+
Sbjct: 1819 K 1819
Score = 46 (21.3 bits), Expect = 8.3e-171, Sum P(3) = 8.3e-171
Identities = 14/56 (25%), Positives = 23/56 (41%)
Query: 189 ESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAG--TRSSVSSRVEQKIL 242
+SF F P+ K P + L +K ++N G TR ++ + IL
Sbjct: 660 QSFTQEFQNRTINFPVVKDPQDPNTRARLSQKSGSQKNEGNVTRKQLAFDPQPTIL 715
>SGD|S000006088 [details] [associations]
symbol:REV3 "Catalytic subunit of DNA polymerase zeta"
species:4932 "Saccharomyces cerevisiae" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0070987 "error-free translesion synthesis"
evidence=IDA] [GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 SGD:S000006088
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 EMBL:BK006949
SUPFAM:SSF53098 EMBL:X96770 GO:GO:0003887 GO:GO:0070987
GO:GO:0042276 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 HOGENOM:HOG000194392 OrthoDB:EOG4FN7RT
EMBL:M29683 EMBL:Z73523 PIR:A33602 RefSeq:NP_015158.1
ProteinModelPortal:P14284 SMR:P14284 IntAct:P14284
MINT:MINT-2731570 STRING:P14284 PRIDE:P14284 EnsemblFungi:YPL167C
GeneID:855936 KEGG:sce:YPL167C CYGD:YPL167c OMA:DRWGYTH
NextBio:980687 Genevestigator:P14284 GermOnline:YPL167C
Uniprot:P14284
Length = 1504
Score = 1512 (537.3 bits), Expect = 1.4e-157, Sum P(2) = 1.4e-157
Identities = 344/829 (41%), Positives = 499/829 (60%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLY--TCPPEEDRKV-GIILIGQESELPEV 440
LT L +EIHA +R+ PDPA DEV I + L T P + D GI+++ + SE
Sbjct: 667 LTHLTLEIHANTRSDKIPDPAIDEVSMIIWCLEEETFPLDLDIAYEGIMIVHKASEDSTF 726
Query: 441 RTK------PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLG- 493
TK I + F +E E+F + V DPDIL G+EI SWGY++ER +
Sbjct: 727 PTKIQHCINEIPVMFYESEFEMFEALTDLVLLLDPDILSGFEIHNFSWGYIIERCQKIHQ 786
Query: 494 LNLNQELSRIT-EVE-KRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMY 551
++ +EL+R+ +++ K + + ++ + + GR +IN+WR LR +VNL YT E+ +
Sbjct: 787 FDIVRELARVKCQIKTKLSDTWGYAHSSGIMITGRHMINIWRALRSDVNLTQYTIESAAF 846
Query: 552 HVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHY-LIRVTGIIRLIEQLDFIGRTSEMAR 610
++LH+R+P S++ LT W + + TV +Y L R I+L+ + D+I R E AR
Sbjct: 847 NILHKRLPHFSFESLTNMWNAKKSTTELKTVLNYWLSRAQINIQLLRKQDYIARNIEQAR 906
Query: 611 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 670
L GI F+ V RGSQF+VES ++R+ + +F+ +SP K +A E +PL++EPES
Sbjct: 907 LIGIDFHSVYYRGSQFKVESFLIRICKSESFILLSPGKKDVRKQKALECVPLVMEPESAF 966
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 730
Y P+IVLDFQSLYPS++I YNYC+ST +GRV + ++++ G ++ L L+
Sbjct: 967 YKSPLIVLDFQSLYPSIMIGYNYCYSTMIGRVREINLTEN-NLGVSKFSLPRNILALLKN 1025
Query: 731 KLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY-KSNAALQRVLHARQLGL 789
+TI+P+GV + S+R L KML +ILD R+M+K++M E N L+R+L+ +QL L
Sbjct: 1026 DVTIAPNGVVYAKTSVRKSTLSKMLTDILDVRVMIKKTMNEIGDDNTTLKRLLNNKQLAL 1085
Query: 790 KLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDS 849
KL+ANVTYGYT+A+FSGRMPC ++ DS+V GRETL+KAI+ + W +VVYGDTDS
Sbjct: 1086 KLLANVTYGYTSASFSGRMPCSDLADSIVQTGRETLEKAIDIIEKDETWNAKVVYGDTDS 1145
Query: 850 MFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETAD 909
+FV PGKT EAF IG +A LKFEKVY P IL +KKRYVG+ YE+
Sbjct: 1146 LFVYLPGKTAIEAFSIGHAMAERVTQNNPKPIFLKFEKVYHPSILISKKRYVGFSYESPS 1205
Query: 910 QDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISV 969
Q PI++AKGIETVRRDG PA KI++K + LLF+TKDLS +K+Y++ +F KI G++S
Sbjct: 1206 QTLPIFDAKGIETVRRDGIPAQQKIIEKCIRLLFQTKDLSKIKKYLQNEFFKIQIGKVSA 1265
Query: 970 QDMTFAKEYRGQAGYKPGACVPALSLA-RQWVLTDPRAEPRVSERVPYVIVSGAPGLPLI 1028
QD FAKE + A YK PA ++ ++ + D RAEP+ ER+PY++V G G L
Sbjct: 1266 QDFCFAKEVKLGA-YKSEKTAPAGAVVVKRRINEDHRAEPQYKERIPYLVVKGKQGQLLR 1324
Query: 1029 KLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSV 1088
+ SP E L+ +L L+SEYYI +++IPPL+R F L+G V W + + + +
Sbjct: 1325 ERCVSPEEFLEGENLELDSEYYINKILIPPLDRLFNLIGINVGNWAQEIVKSKRASTTTT 1384
Query: 1089 LNERKKKSTISQYFASVNCVCCNQ-MTQN-NKGVCDACLNQTQLLGTCLYYKIQAWQRSQ 1146
K I++ S C C + +T+ + +CD CL + T L + I+ +R +
Sbjct: 1385 -----KVENITRVGTSATCCNCGEELTKICSLQLCDDCLEKRST--TTLSFLIKKLKRQK 1437
Query: 1147 D-QVNK-VCTTCVGRSTS-----ND-----CISLDCPVLYRKTQITRDL 1183
+ Q K VC TC R TS ND C S DCPV Y + + R L
Sbjct: 1438 EYQTLKTVCRTCSYRYTSDAGIENDHIASKCNSYDCPVFYSRVKAERYL 1486
Score = 45 (20.9 bits), Expect = 1.4e-157, Sum P(2) = 1.4e-157
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 206 KPPTSKSVTRWLERKEAFKRNAGTRSSVS 234
KPPT +V +W + + N T S +S
Sbjct: 609 KPPTYDAVQKWYNKVPSMG-NKKTESQIS 636
>UNIPROTKB|A8IZI8 [details] [associations]
symbol:POLZ1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:DS496129 RefSeq:XP_001694423.1 STRING:A8IZI8
EnsemblPlants:EDP02418 GeneID:5720008 KEGG:cre:CHLREDRAFT_117843
ProtClustDB:CLSN2703070 BioCyc:CHLAMY:CHLREDRAFT_117843-MONOMER
Uniprot:A8IZI8
Length = 729
Score = 1524 (541.5 bits), Expect = 2.4e-156, P = 2.4e-156
Identities = 321/723 (44%), Positives = 449/723 (62%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN--LNQELSRI---TEV 506
+E L F + DPD++ G++++ S GYL ER LGL L + R + V
Sbjct: 1 DEPSLLRAFAAALSSLDPDVVCGWDVQRHSLGYLAERAAALGLAPPLLRAAGRTPGTSSV 60
Query: 507 -EKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 565
E++N + + + GR+++NLWR+LR E+ L SYTFE+ VL R+P +
Sbjct: 61 KERQNDEWGALHASGFHVTGRVLLNLWRVLRGELKLGSYTFESCAAAVLGLRVPRVREQQ 120
Query: 566 LTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 625
L W+ +W T+ R + + EQLD +GRT+EMAR FGI F+ VLSRGSQ
Sbjct: 121 LALWFAAGPSAGRWRTLSWLCRRCRLQLAMAEQLDLVGRTAEMARTFGIDFFSVLSRGSQ 180
Query: 626 FRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYP 685
+RVES+++RL+ NN++ +PS +Q A E+LPL++EPESR+Y P++VLDFQSLYP
Sbjct: 181 YRVESLLVRLAHTNNYIMPTPSREQVGGQPAMEALPLVMEPESRMYASPVVVLDFQSLYP 240
Query: 686 SVIIAYNYCFSTCLGRVEHLGVSDS-FPFGCIDLNVSIRSL-KKLQQKLTISPSGVAFVD 743
S +IAYN C+STC+GR H + G + + + L ISP+GVA+V
Sbjct: 241 SQVIAYNLCYSTCVGRPMHARAGGTPVRLGVTQYSYPAPAAGTATPEDLVISPNGVAYVS 300
Query: 744 KSIRCGILPKMLQEILDTRLMVKQSMKEYK-SNAALQRVLHARQLGLKLIANVTYGYTAA 802
+R G+LP+ML+EILDTR+M+K +MK+ + L RVL+ARQ GLK+IANV+YGYTAA
Sbjct: 301 PQVRPGVLPRMLREILDTRVMIKGAMKKVPPEDKVLLRVLNARQFGLKMIANVSYGYTAA 360
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
FSGRMP E+ D++V GR+TL+ AI V + +W+ RVVYGDTDSMFVL G++++EA
Sbjct: 361 GFSGRMPFAELADAIVQSGRQTLENAIAMVESHPEWRARVVYGDTDSMFVLLQGRSRKEA 420
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIET 922
F IG EIA LK EKVY PC+LQTKKRYVG+ YE+ Q P ++AKGIET
Sbjct: 421 FRIGAEIARAVTAANPSPVTLKMEKVYHPCLLQTKKRYVGFSYESPTQASPTFDAKGIET 480
Query: 923 VRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYR-GQ 981
VRRD CPAV+K+L++S+ LLF +KDLS VK Y+++Q++KI+S R+SVQD FAKE R G
Sbjct: 481 VRRDSCPAVAKLLEQSIRLLFGSKDLSGVKSYLQRQWTKILSNRVSVQDFIFAKEVRLGT 540
Query: 982 AGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQ-D 1040
PA +A + + DPRAEP+ +ERVPYV+V PG L+ SP+ L++
Sbjct: 541 YSANAATMPPAAEVAARAMAADPRAEPKYAERVPYVVVHAEPGARLVDSAVSPWALVEAG 600
Query: 1041 SSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPS-----VLNERKKK 1095
SLRLN YYIT+ IIP LER L+G V W+ +PR + LP +L
Sbjct: 601 GSLRLNGTYYITKQIIPALERVLSLVGADVRAWFAEMPRPQRM-LPQKRPAGMLAGAAAG 659
Query: 1096 STISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTT 1155
TI +++ S +CV C+Q+T+ + +CD C Q L ++ +R + ++C
Sbjct: 660 GTIDRFYLSRHCVVCDQLTRAAQPLCDVCKRDPQASLALLAAQVARLERQHTHMVRMCLH 719
Query: 1156 CVG 1158
C G
Sbjct: 720 CGG 722
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 930 (332.4 bits), Expect = 2.4e-152, Sum P(4) = 2.4e-152
Identities = 195/400 (48%), Positives = 264/400 (66%)
Query: 700 GRVEHLGVSDSFP-----FGCIDLNVSIRSLKKLQ-QKLTISPSGVAFVDKSIRCGILPK 753
G EH+ +D+ FG L + L+ + + L ISP+ V F DKSIR G+ PK
Sbjct: 2139 GGEEHIDDNDNSKINKKKFGASWLENKLGLLESISIEHLNISPNNVIFTDKSIRTGLFPK 2198
Query: 754 MLQEILDTRLMVKQSMKEY-KSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVE 812
+LQE+LDTR+MVK++MK+ K + + +L+ARQLGLK++ANV +GYTAA +SGRMPC+E
Sbjct: 2199 LLQEVLDTRIMVKRAMKKIDKGDKKMFNILNARQLGLKMMANVAFGYTAATYSGRMPCIE 2258
Query: 813 VGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXX 872
+GDS+V RETL+ AI+ V ++ +W +VVYGDTDS+FVL PG ++++AFEIG+ IA
Sbjct: 2259 IGDSIVQTARETLEAAIKIVESSKEWNAKVVYGDTDSLFVLLPGVSREKAFEIGQNIANK 2318
Query: 873 XXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVS 932
KL FEKVY PCIL KKRYVGY YE+ Q +PI++AKGIETVRRD C VS
Sbjct: 2319 VTSLNPSPVKLLFEKVYHPCILVNKKRYVGYKYESPSQTEPIFDAKGIETVRRDSCKVVS 2378
Query: 933 KILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKP------ 986
KIL+KS+ ++FETKD+S+VK YV +Q+ KI+ R S+ D F+KE R YK
Sbjct: 2379 KILEKSIRIIFETKDISLVKSYVIRQWEKILQDRFSLSDFIFSKEVR-LGTYKCQQQQNN 2437
Query: 987 ----GACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSS 1042
PA +A + + +DPR EPR ERV YV+V G P LI LV +P E L+ S
Sbjct: 2438 IDDLNGLPPAALIASRLMKSDPRLEPRYGERVKYVVVYGEPNSRLIDLVLTPMEFLERSD 2497
Query: 1043 -LRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKL 1081
LR+N YYIT+ I+P L+R F +L V W+ + P++L
Sbjct: 2498 RLRINVIYYITKQILPALDRIFKVLNVNVRQWFNDQPKQL 2537
Score = 504 (182.5 bits), Expect = 2.4e-152, Sum P(4) = 2.4e-152
Identities = 97/200 (48%), Positives = 143/200 (71%)
Query: 519 TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWW-------- 570
T +++ GRIV+NLWRLLRHE+ L +YT++N+ +HVL++R +S+K LT W+
Sbjct: 1882 TGMKIIGRIVLNLWRLLRHEITLDNYTYQNLCFHVLNKRQEEYSFKKLTNWYGGGGGSSN 1941
Query: 571 ---EHR-THLY--KWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 624
+H+ H Y +W T+E+YL + LI D I RTSE +R++GI F VLSRGS
Sbjct: 1942 TFQQHQHQHQYQQRWRTLEYYLKKCENNFNLIYAFDLIQRTSEFSRVYGIDFNSVLSRGS 2001
Query: 625 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 684
Q+ VES++LRL++ NF+ +SPS ++ PES+PL+++P +RLY P++VLDFQSLY
Sbjct: 2002 QYTVESMLLRLTKPENFILLSPSREEVLSQPMPESIPLVMDPITRLYNSPVVVLDFQSLY 2061
Query: 685 PSVIIAYNYCFSTCLGRVEH 704
PS++IAYNYC+STCLG+V++
Sbjct: 2062 PSIMIAYNYCYSTCLGKVQN 2081
Score = 203 (76.5 bits), Expect = 9.9e-121, Sum P(4) = 9.9e-121
Identities = 61/195 (31%), Positives = 98/195 (50%)
Query: 380 ENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYL---YTCPPEEDRKV---GIILIGQ 433
+N LT+L+VEIH SR L P+P +D +++I Y + + E D+ GI+++
Sbjct: 1712 QNQNLTILSVEIHCNSRDNLNPNPEFDSIQSIIYCIRDEQSIEIEGDQYQDIKGILMVND 1771
Query: 434 ESELPEVRTKPIQ--MHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV 491
E + + + + NE ELF F+E +R +D DIL+G+E++ S GYL+ER
Sbjct: 1772 GHYENENNSYGLNCFIKVLHNEFELFKSFVELIRSYDIDILVGFEVQMSSIGYLIERANQ 1831
Query: 492 LGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMY 551
LGL+L E+SR+ N+ T + R R + Y+FE+
Sbjct: 1832 LGLSLCDEISRVIS----NTGLTGQNTTTTKGANRTK----RTNYFSKDRDQYSFEHFTG 1883
Query: 552 HVLHERIPLHSWKLL 566
+ RI L+ W+LL
Sbjct: 1884 MKIIGRIVLNLWRLL 1898
Score = 91 (37.1 bits), Expect = 2.4e-152, Sum P(4) = 2.4e-152
Identities = 18/72 (25%), Positives = 39/72 (54%)
Query: 1112 QMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCV-GRSTSN-DCISLD 1169
Q + ++ +C +C Q L + + + +++VN +C +C+ +S DCISLD
Sbjct: 2613 QQSLSSYPICKSCGMDEQTSYFTLVSRYKYIENQKNKVNDICRSCIRDQSVETIDCISLD 2672
Query: 1170 CPVLYRKTQITR 1181
C + Y++ ++ +
Sbjct: 2673 CSIFYQRRKLVQ 2684
Score = 71 (30.1 bits), Expect = 2.4e-152, Sum P(4) = 2.4e-152
Identities = 29/87 (33%), Positives = 41/87 (47%)
Query: 125 QEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVCLEVTGDATRNV 184
QEPFYSN DI R I K V P+ + + + G++ W+ RV L V+ N
Sbjct: 1544 QEPFYSNPMDIPR--IPRKPV----VPLQQFKSNLKEYKGINHWK-RVFLPVS-PFNNNN 1595
Query: 185 NDIMESFQHIFPKSNFIKPIAKPPTSK 211
N+ + +IF +A PP SK
Sbjct: 1596 NNNQNNISNIFT-------LAIPPPSK 1615
Score = 56 (24.8 bits), Expect = 1.1e-148, Sum P(4) = 1.1e-148
Identities = 20/97 (20%), Positives = 42/97 (43%)
Query: 1090 NERKKKSTISQYFASVNCVCCN----------------QMTQNNKGVCDACLNQTQLLGT 1133
N + +TI Q++ + +C+ C Q + ++ +C +C Q
Sbjct: 2575 NNDHQNTTIDQFYKTSSCLVCGSAIDRTSDEDNNNVDEQQSLSSYPICKSCGMDEQTSYF 2634
Query: 1134 CLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDCISLDC 1170
L + + + +++VN +C +C+ R S + I DC
Sbjct: 2635 TLVSRYKYIENQKNKVNDICRSCI-RDQSVETI--DC 2668
Score = 37 (18.1 bits), Expect = 7.3e-48, Sum P(4) = 7.3e-48
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 689 IAYNYCFSTCLGRVEHLGVSDS 710
+A+ Y +T GR+ + + DS
Sbjct: 2241 VAFGYTAATYSGRMPCIEIGDS 2262
Score = 37 (18.1 bits), Expect = 9.6e-15, Sum P(5) = 9.6e-15
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 569 WWEHRTHLYKWMTVEHYLIRVTGII 593
W E++ L + +++EH I +I
Sbjct: 2161 WLENKLGLLESISIEHLNISPNNVI 2185
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 1463 (520.1 bits), Expect = 3.5e-152, Sum P(2) = 3.5e-152
Identities = 325/818 (39%), Positives = 477/818 (58%)
Query: 387 LAVEIHAISRALLKPDPAYDEVKAIFYYL---YTCPPEEDRKVGIILIGQESE-----LP 438
L++EIH +R + P+P DE+K I + + + E G+++ E++ +
Sbjct: 630 LSMEIHVDTRRNMLPNPRTDEIKMICWSIDGPQSVGTMELSTDGLLVSLNENDAIYKRII 689
Query: 439 EVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL-GLNLN 497
E ++ F ++E EL + F + V DPDIL GYE SWGY+L R + ++
Sbjct: 690 EEACGKTRVAFFTSEYELITEFAKLVLIIDPDILSGYETNKSSWGYILARAELSHNIDFG 749
Query: 498 QELSRITEVEKRN--SSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
+SR++ ++ S + + +++ GR ++N+WR +R EVNL Y EN+ YH+LH
Sbjct: 750 LLISRLSRDDRSGLASEWNYSHSAGIKIAGRHMLNVWRKMRTEVNLAKYNIENVAYHLLH 809
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLI-RVTGIIRLIEQLDFIGRTSEMARLFGI 614
ER+P + + L+ +W ++ V +Y + RV IRL+ I RT E ARL GI
Sbjct: 810 ERLPKFTHETLSGFWRTKSDRTSIKIVINYCLERVRCNIRLLNLKQVISRTVEQARLIGI 869
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
FY VLSRGSQ+RVES++ RL++ + + +SP H RA E +PLILEP+ YT P
Sbjct: 870 DFYSVLSRGSQYRVESVLARLAKAEHLMLISPGKGDLRHQRALECVPLILEPDPTFYTSP 929
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNV-SIRSLKKLQQKLT 733
++VLDFQSLYPS+IIAYNYC++T LGR + ++ G I N+ L+ L +T
Sbjct: 930 VLVLDFQSLYPSIIIAYNYCYTTILGRTREMTAGEN-KIG-ITTNILKPNILQLLGDNIT 987
Query: 734 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE-YKSNAALQRVLHARQLGLKLI 792
I+P+GV +V ++IR IL KML +ILDTR+++K+++ + + + L L RQL LKL+
Sbjct: 988 IAPNGVTYVKQNIRKSILAKMLSDILDTRVLLKRTISDMHNGSKRLLSTLDNRQLALKLL 1047
Query: 793 ANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFV 852
ANVTYGY +A++SGRMPC ++ DS+V GRETL+ AI+ + KW RVVYGDTDS+FV
Sbjct: 1048 ANVTYGYASASYSGRMPCSDIADSIVHTGRETLRAAIQMIEKEDKWGARVVYGDTDSLFV 1107
Query: 853 LAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDK 912
PGK++++AF+IG I+ KLKFEKVY PCIL +KKRYVG+ YE A Q+
Sbjct: 1108 HLPGKSREQAFKIGAAISDAVTAANPNPIKLKFEKVYHPCILLSKKRYVGHAYEHASQEV 1167
Query: 913 PIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDM 972
P Y+AKGIETVRRDG PA KI+++SL +LF TKDLS +K Y+ QF KI++G + + D
Sbjct: 1168 PRYDAKGIETVRRDGHPAQRKIIQRSLEILFRTKDLSQLKAYIVNQFWKIMTGSVPIGDF 1227
Query: 973 TFAKEYRGQAGYKPGACVP-ALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLV 1031
F+KE R YK A P A +AR+ + D AEP+ ERV YV+ PG L
Sbjct: 1228 CFSKEVR-LGFYKSEAAAPPAAQVARRMMENDSMAEPQYRERVSYVVAKSRPGTLLADRC 1286
Query: 1032 KSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPR-KLHVYLPSVLN 1090
+P + L D L L++EYYIT+ +IPPL R +G + WY+ +PR + ++ S +
Sbjct: 1287 IAPQDFLADPRLELDAEYYITKTLIPPLNRLLQTVGLDLFDWYREMPRPSSYKHVGSGAS 1346
Query: 1091 ERKKKSTISQYFASVNCVCCNQ--MTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQ 1148
+ T+ S C+CC + T+N +CD+C L + + ++
Sbjct: 1347 D-----TLHHVLKSNRCLCCKREATTKNGLQLCDSCRTSPSESSVALLLDRRTRESRFNR 1401
Query: 1149 VNKVCTTCVGRSTS----------NDCISLDCPVLYRK 1176
+ C C T N C + DCPV Y +
Sbjct: 1402 ALRACRVCCFPLTKDLLAAPEIGPNQCQAHDCPVFYTR 1439
Score = 43 (20.2 bits), Expect = 3.5e-152, Sum P(2) = 3.5e-152
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 99 KLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTE--ITNKFVHLEAAPVALLE 156
+ K PIS A + + L + Q P+YSN D+ + + T+K+ ++E+ ++ E
Sbjct: 489 RYKSPPISYADMSDALEANGEPAVDYQGPYYSNPVDLPKGKDNTTHKY-NIESDHISCRE 547
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 1412 (502.1 bits), Expect = 2.5e-147, Sum P(2) = 2.5e-147
Identities = 310/811 (38%), Positives = 469/811 (57%)
Query: 386 VLAVEIHAISRALLKPDPAYDEVKAIFY-YLYTCPPEEDRKVGIILIGQESELPEV-RTK 443
+LA+E+ S L PDP D ++ F+ Y +VG I++ + + R+
Sbjct: 653 ILALELFCCSHGGLTPDPTKDSIECCFWAYQEDVNSSMIDRVGFIVVDKSASNSSFGRSF 712
Query: 444 P-IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQELS 501
P + V++E EL + I RQ DP I+ GYE+ SWGYL+ER Y +L ++LS
Sbjct: 713 PSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASYRFNYDLPEQLS 772
Query: 502 RITEVEKRNSSRDE-----VKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
R+ K N ++ E + + + GR V+N+WR+LR EVNL +Y+ EN++ ++ +
Sbjct: 773 RLKCTSKANFAKKENAWKYTTTSSINIVGRHVLNIWRILRGEVNLLNYSLENVVLNIFKK 832
Query: 557 RIPLHSWK-LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQ 615
+ P ++ + W R H K + + + L R + ++ + + E AR+ GI
Sbjct: 833 QTPYYNQADKVHLWQSSRFH-EKQILLNYMLNRTRYCLEILSACAIVTKIREQARIIGID 891
Query: 616 FYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPI 675
F V+SRGSQF+VESIM R+++ N++ SPS KQ A A E+LPL++EP+S LY +P+
Sbjct: 892 FMSVISRGSQFKVESIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNNPV 951
Query: 676 IVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTIS 735
+VLDFQSLYPS+IIAYN C+STCLG V+ + F N +I +L ++ + IS
Sbjct: 952 VVLDFQSLYPSIIIAYNLCYSTCLGPVKIVNGKVKLGFMFHSSNPNIVNL--IKNDVYIS 1009
Query: 736 PSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANV 795
P+G A+V +++R +L KML+E+++TR MVK+ MK+ S+ + +VL++RQL LKLIANV
Sbjct: 1010 PNGYAYVKENVRKSLLAKMLEELIETRNMVKRGMKDCDSDY-VNKVLNSRQLALKLIANV 1068
Query: 796 TYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAP 855
TYGYT+A+FSGRMPC E+ D++V GRE L ++E +N +VVYGDTDS+FV P
Sbjct: 1069 TYGYTSASFSGRMPCSEIADTIVETGREILSYSLEYINTLDFCHAKVVYGDTDSLFVELP 1128
Query: 856 GKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIY 915
G TK++AF+IG+++A +LKFEK+Y PC L KKRYVG+ +E+ Q PI+
Sbjct: 1129 GATKEQAFDIGQQLANNITSRFPSPIRLKFEKIYFPCFLLAKKRYVGFKFESVSQKAPIF 1188
Query: 916 EAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFA 975
EAKGIETVRRDG P ++L++ L +LF+TKDLS VK+ + +I+SG + V D F+
Sbjct: 1189 EAKGIETVRRDGTPVQQQLLRRCLEILFKTKDLSTVKKEFQNVCYQIMSGNVPVMDFCFS 1248
Query: 976 KEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
KE R + + P +AR+ + DPR EP+ ERVPY+I++ APG L +P
Sbjct: 1249 KEVRLEKYKELSTAPPGAVMARRLMTKDPRREPQYGERVPYLIIAAAPGTTLANRSVAPE 1308
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPR-KLHVYLPSVLNERKK 1094
E L S +L+ YYI +IPPL+R LLG WY +P+ + + L + +
Sbjct: 1309 EFLSSSFSQLDINYYINNSLIPPLDRFLNLLGASAQSWYHEMPKPRTSLKLTETVKGGIQ 1368
Query: 1095 KSTISQYFASVNCVCC--NQMT---QNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQV 1149
K T+ + C C N + +C CL + + A+ + +
Sbjct: 1369 KKTLDTFLMEKLCSSCLKNNIEIIPDKINSLCSDCLKNPCATISKAVTQHNAYNKKLSLL 1428
Query: 1150 NKVCTTCVGRSTSND--CISLDCPVLYRKTQ 1178
+C C S+S+ C S C V Y + +
Sbjct: 1429 FDICRGCSKLSSSDPVLCKSNSCKVYYDRAK 1459
Score = 48 (22.0 bits), Expect = 2.5e-147, Sum P(2) = 2.5e-147
Identities = 31/130 (23%), Positives = 55/130 (42%)
Query: 114 LINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEHRCLFSGLSEWRQRVC 173
L+ T + I E ++ +++T ++ TN F L + L EE W+ V
Sbjct: 234 LLVTSLAEIWKSE---ASRRNLTSSDETNSFSKLHQSQFGLKEESSHEPRSSQHWKNEVA 290
Query: 174 LEVTGDATRN-VNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSS 232
++ D +N + +ES + F P + PT S + K+ + R + S
Sbjct: 291 MK---DLLKNLIKSKLESSSDVNTPLIF-DPWPELPTIYSA---IHTKD-YVRPSQNDIS 342
Query: 233 VSS-RVEQKI 241
VS V++KI
Sbjct: 343 VSQISVDEKI 352
>UNIPROTKB|F1RZP3 [details] [associations]
symbol:F1RZP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR017964 Pfam:PF00136
PROSITE:PS00116 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00550000074640
EMBL:CU915528 Ensembl:ENSSSCT00000004881 Uniprot:F1RZP3
Length = 440
Score = 1350 (480.3 bits), Expect = 6.5e-138, P = 6.5e-138
Identities = 258/443 (58%), Positives = 332/443 (74%)
Query: 754 MLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEV 813
ML+EIL TRLMVKQSMK YK + AL R+L ARQLGLKLIANVT+GYTAANFSGRMPC+EV
Sbjct: 1 MLEEILKTRLMVKQSMKAYKQDRALSRMLEARQLGLKLIANVTFGYTAANFSGRMPCIEV 60
Query: 814 GDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXX 873
GDS+V K RETL++AI+ VN+T KW RVVYGDTDSMFVL G TK+++F+IG+EIA
Sbjct: 61 GDSIVHKARETLERAIKLVNDTKKWGARVVYGDTDSMFVLLKGATKEQSFKIGQEIAEAV 120
Query: 874 XXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSK 933
KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AKGIETVRRD CPAVSK
Sbjct: 121 TATNPKPVKLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSK 180
Query: 934 ILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPAL 993
IL++SL LLFET+D+S++K+YV++Q K++ G+ S+QD FAKEYRG A YKPGACVPAL
Sbjct: 181 ILERSLKLLFETRDISLIKQYVQRQCLKLLEGKASIQDFIFAKEYRGSASYKPGACVPAL 240
Query: 994 SLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITR 1053
L R+ + D R+EPRV ERVPYVI+ G PG+PLI+LV+ P E++QD +LRLN+ YYIT+
Sbjct: 241 ELTRKMLTHDRRSEPRVGERVPYVIIYGTPGVPLIQLVRRPVEVMQDPTLRLNATYYITK 300
Query: 1054 VIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERK-KKSTISQYFASVNCVCCNQ 1112
I+PPL R F L+G V WY LPRK S +E + +K TISQYF +++C C+
Sbjct: 301 QILPPLARIFSLIGIDVFNWYHELPRKA---TSSSRSEHEGRKGTISQYFTTLHCPVCDD 357
Query: 1113 MTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSN-DCISLDCP 1171
+TQ+ G+C C +Q Q + L +I+ +R Q+Q+ K+C C G + C+SL+CP
Sbjct: 358 LTQH--GICTKCRSQPQHVAVILNQEIRELERQQEQLVKICRNCTGCFDRHIPCVSLNCP 415
Query: 1172 VLYRKTQITRDLDQLSYVLSLCD 1194
VLY+ +++ R+L + Y+ L D
Sbjct: 416 VLYKLSRVNRELSKAPYLRQLLD 438
>WB|WBGene00021344 [details] [associations]
symbol:Y37B11A.2 species:6239 "Caenorhabditis elegans"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 1107 (394.7 bits), Expect = 1.5e-118, Sum P(3) = 1.5e-118
Identities = 264/691 (38%), Positives = 407/691 (58%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT--CPPEEDRKVGIILIGQESELPEVR 441
L V ++E+ + + PD A E+ ++ +Y C K+ ++L P
Sbjct: 347 LCVASLEL-LVDTKMPMPDAASSEIVSVSLAIYNDVCRCSSP-KLHVLLTTLPVG-PAYS 403
Query: 442 TKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELS 501
+ + +H + E E+ + + Q+D D++IGYE LSWG+ R +LG ++ + +
Sbjct: 404 DRRV-VH-METELEMLEEVAKWIVQYDVDVMIGYETIRLSWGFFFRRIKLLGSRISMDRA 461
Query: 502 RITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP-L 560
I E + D+ + T GR+++++W+++R ++ L++Y + + +VL ++IP L
Sbjct: 462 LIDAYED-HIEVDDQEITVAPPKGRLLVSVWKVVRSDLALRNYDLGSAVANVLRKKIPML 520
Query: 561 HSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEV 619
+ L+ R+ + V +L++++ + I L+ ++++ + +EMAR++GIQF+EV
Sbjct: 521 DNAALMRRIKGERSAIRN--DVHLHLLKLSSLNISLLTEMNWFLKNAEMARVYGIQFHEV 578
Query: 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 679
+RGSQ RVES++LRL+ NFVA S + QR M +PE L LILEP+S++Y DP+IVLD
Sbjct: 579 WTRGSQLRVESMLLRLAHRMNFVAPSITHLQRNMMGSPEQLQLILEPQSKVYFDPVIVLD 638
Query: 680 FQSLYPSVIIAYNYCFSTCLGRVEHL-GVSDS------FPFGCIDLNVSIRSLKKL--QQ 730
FQSLYPS++IAYNYC+ST LG++ +L ++D G I + S + KL +
Sbjct: 639 FQSLYPSMVIAYNYCYSTILGKIGNLVQMNDESRNREEIVLGAIKYHPSKDDIVKLVAYK 698
Query: 731 KLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLK 790
++ SP FV KS R G++P +L+EIL R+MVK +MK K N L+R+L ARQL LK
Sbjct: 699 EVCASPLASMFVKKSKREGVMPLLLREILAARIMVKSAMKRTK-NKKLKRILDARQLALK 757
Query: 791 LIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSM 850
L+ANV+YGYTAAN+SGRMPC E+ D+++ KGRETL+++IE V V+YGDTDSM
Sbjct: 758 LVANVSYGYTAANWSGRMPCAELADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSM 817
Query: 851 FVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQ 910
FVL G + +EAFEIG+ I LK EKVY+ C+L+TKKRY G+MYE +
Sbjct: 818 FVLVRGASVEEAFEIGRRIVDDVTNSNPDPVVLKLEKVYKGCVLETKKRYAGWMYEH-EN 876
Query: 911 DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQ 970
D+ +AKGIETVRRD CP V+++L+KSL L+F +++ Y+ + S
Sbjct: 877 DEGSLDAKGIETVRRDTCPIVAEVLEKSLGLIF-SQNWKTFITYLNTVVLNLPQENFS-- 933
Query: 971 DMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKL 1030
F KEYRG Y A VP +A + P ERVPYVI+ G G +
Sbjct: 934 KFVFCKEYRGD--YSARAMVPQKKIAEARIRKCPSHITLRGERVPYVIIDGVTGSTVYSC 991
Query: 1031 VKSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
V+S + ++ ++N+ YY+ I+ L R
Sbjct: 992 VRSIDQFARNPEYKINTFYYLNAHILAALRR 1022
Score = 57 (25.1 bits), Expect = 1.5e-118, Sum P(3) = 1.5e-118
Identities = 22/96 (22%), Positives = 38/96 (39%)
Query: 1102 FASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTC----- 1156
FA+ C + C C + L L ++ R++ Q+ + CT+C
Sbjct: 1036 FAAEQCFVSDCSRIGKTPWCIECEQNPEELALALV-QLGRESRARSQIIQYCTSCQSSSQ 1094
Query: 1157 -VGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLS 1191
+G DC + C L R+T D + + VL+
Sbjct: 1095 RLGEDQVVDCANFTC--LLRQTMSIMDRSRTASVLT 1128
Score = 38 (18.4 bits), Expect = 1.5e-118, Sum P(3) = 1.5e-118
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 34 MEGRAENEHMISSSESYLFTQNK 56
ME +A+N H + YL+ + K
Sbjct: 62 MEMQADNVHSSNPGLEYLWREEK 84
>UNIPROTKB|Q9BKQ3 [details] [associations]
symbol:Y37B11A.2 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005634 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 1107 (394.7 bits), Expect = 1.5e-118, Sum P(3) = 1.5e-118
Identities = 264/691 (38%), Positives = 407/691 (58%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT--CPPEEDRKVGIILIGQESELPEVR 441
L V ++E+ + + PD A E+ ++ +Y C K+ ++L P
Sbjct: 347 LCVASLEL-LVDTKMPMPDAASSEIVSVSLAIYNDVCRCSSP-KLHVLLTTLPVG-PAYS 403
Query: 442 TKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELS 501
+ + +H + E E+ + + Q+D D++IGYE LSWG+ R +LG ++ + +
Sbjct: 404 DRRV-VH-METELEMLEEVAKWIVQYDVDVMIGYETIRLSWGFFFRRIKLLGSRISMDRA 461
Query: 502 RITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP-L 560
I E + D+ + T GR+++++W+++R ++ L++Y + + +VL ++IP L
Sbjct: 462 LIDAYED-HIEVDDQEITVAPPKGRLLVSVWKVVRSDLALRNYDLGSAVANVLRKKIPML 520
Query: 561 HSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEV 619
+ L+ R+ + V +L++++ + I L+ ++++ + +EMAR++GIQF+EV
Sbjct: 521 DNAALMRRIKGERSAIRN--DVHLHLLKLSSLNISLLTEMNWFLKNAEMARVYGIQFHEV 578
Query: 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 679
+RGSQ RVES++LRL+ NFVA S + QR M +PE L LILEP+S++Y DP+IVLD
Sbjct: 579 WTRGSQLRVESMLLRLAHRMNFVAPSITHLQRNMMGSPEQLQLILEPQSKVYFDPVIVLD 638
Query: 680 FQSLYPSVIIAYNYCFSTCLGRVEHL-GVSDS------FPFGCIDLNVSIRSLKKL--QQ 730
FQSLYPS++IAYNYC+ST LG++ +L ++D G I + S + KL +
Sbjct: 639 FQSLYPSMVIAYNYCYSTILGKIGNLVQMNDESRNREEIVLGAIKYHPSKDDIVKLVAYK 698
Query: 731 KLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLK 790
++ SP FV KS R G++P +L+EIL R+MVK +MK K N L+R+L ARQL LK
Sbjct: 699 EVCASPLASMFVKKSKREGVMPLLLREILAARIMVKSAMKRTK-NKKLKRILDARQLALK 757
Query: 791 LIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSM 850
L+ANV+YGYTAAN+SGRMPC E+ D+++ KGRETL+++IE V V+YGDTDSM
Sbjct: 758 LVANVSYGYTAANWSGRMPCAELADAILGKGRETLERSIEMVQRGDYGGAEVIYGDTDSM 817
Query: 851 FVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQ 910
FVL G + +EAFEIG+ I LK EKVY+ C+L+TKKRY G+MYE +
Sbjct: 818 FVLVRGASVEEAFEIGRRIVDDVTNSNPDPVVLKLEKVYKGCVLETKKRYAGWMYEH-EN 876
Query: 911 DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQ 970
D+ +AKGIETVRRD CP V+++L+KSL L+F +++ Y+ + S
Sbjct: 877 DEGSLDAKGIETVRRDTCPIVAEVLEKSLGLIF-SQNWKTFITYLNTVVLNLPQENFS-- 933
Query: 971 DMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKL 1030
F KEYRG Y A VP +A + P ERVPYVI+ G G +
Sbjct: 934 KFVFCKEYRGD--YSARAMVPQKKIAEARIRKCPSHITLRGERVPYVIIDGVTGSTVYSC 991
Query: 1031 VKSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
V+S + ++ ++N+ YY+ I+ L R
Sbjct: 992 VRSIDQFARNPEYKINTFYYLNAHILAALRR 1022
Score = 57 (25.1 bits), Expect = 1.5e-118, Sum P(3) = 1.5e-118
Identities = 22/96 (22%), Positives = 38/96 (39%)
Query: 1102 FASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTC----- 1156
FA+ C + C C + L L ++ R++ Q+ + CT+C
Sbjct: 1036 FAAEQCFVSDCSRIGKTPWCIECEQNPEELALALV-QLGRESRARSQIIQYCTSCQSSSQ 1094
Query: 1157 -VGRSTSNDCISLDCPVLYRKTQITRDLDQLSYVLS 1191
+G DC + C L R+T D + + VL+
Sbjct: 1095 RLGEDQVVDCANFTC--LLRQTMSIMDRSRTASVLT 1128
Score = 38 (18.4 bits), Expect = 1.5e-118, Sum P(3) = 1.5e-118
Identities = 8/23 (34%), Positives = 13/23 (56%)
Query: 34 MEGRAENEHMISSSESYLFTQNK 56
ME +A+N H + YL+ + K
Sbjct: 62 MEMQADNVHSSNPGLEYLWREEK 84
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 921 (329.3 bits), Expect = 1.6e-91, Sum P(2) = 1.6e-91
Identities = 237/748 (31%), Positives = 383/748 (51%)
Query: 407 EVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQ 466
E K++FY+ + C ++GI ++ S P+ + I F +L IE Q
Sbjct: 963 EKKSLFYFSHRC-----WQLGIDVMDILSRCPK-NSFNILRAF-----KLADCLIEE--Q 1009
Query: 467 WDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGR 526
+ D GY +++S+ + + L Q + + K+ K ++ GR
Sbjct: 1010 FQNDSAKGYSQQSMSFDS--NQSFKLQNVAMQSIKQSHRSAKQTGFFANFK-LNFEIAGR 1066
Query: 527 IVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS-WKLLTCWWEHRTHLYKWMTVEHY 585
++IN WRL++H+ L Y E+++ +V ERIP+ S W L T + H + E+
Sbjct: 1067 MIINTWRLVKHDYKLFCYELESVVNYVFQERIPIFSNWSL-TQMYNHEDIKQRVFVFEYM 1125
Query: 586 LIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVS 645
+ R+ +I+ + I +E +L+G F + +G QFR+E IM R++ L + +S
Sbjct: 1126 MKRLMKTKDIIDHIQIINTCAEETKLYGFDFQSAICKGHQFRIEHIMNRVTDLLGYKLMS 1185
Query: 646 PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEH- 704
S R E PL LEP Y DP+IVLDF SLYPS++IAYN CFSTCLG ++
Sbjct: 1186 ASRYGVQTQRMLECSPLTLEPPKLFYVDPVIVLDFISLYPSIMIAYNLCFSTCLGYIDDN 1245
Query: 705 --------LGVSDSFPFGCIDLNVSIR-SLKKLQQKLTISPSGVAFVDKSIRCGILPKML 755
LGV + +L + +L + + ++P+ VAFV KS+R G+L ++
Sbjct: 1246 FQKGGFKKLGVQKQWDVQFEELLKKHNYDIDELMKDIFVAPNKVAFVKKSVREGVLSQIT 1305
Query: 756 QEILDTRLMVKQSMKEYKSNAALQRV---LHARQLGLKLIANVTYGYTAANFSGRMPCVE 812
E TR +K +M +YK N + L RQ LKL V +GYT A FSGRMP +
Sbjct: 1306 HEFFFTRQFIKGNMGKYKQNPLYNHIYNKLQQRQKSLKLFMCVIFGYTGATFSGRMPLGD 1365
Query: 813 VGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXX 872
+ DS++ G+ L +AI +NN+ KW +V+YGDTDS+FV G + +A +IGKEI
Sbjct: 1366 LADSIIQIGKFLLNQAINLINNSKKWGAQVIYGDTDSVFVNIKGVSVNDAIKIGKEIESE 1425
Query: 873 XXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVS 932
KLK+EK YQ ++ TKKRY G+ E + D+P +EAKG+E +R+DGC A+S
Sbjct: 1426 VSKMFPYPLKLKYEKTYQNLVILTKKRYAGFFVEN-ETDEPKFEAKGLEVMRKDGCQALS 1484
Query: 933 KILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPA 992
I+K L L + K+LS +K Y+ ++ K+++ + S +D+ +KE + + P P
Sbjct: 1485 IIMKNCLETLLKNKNLSAIKLYLNGEWQKLLNDQFSYRDLIISKECKLENYTMPP---PH 1541
Query: 993 LSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYIT 1052
+A + + DP+ +P+ +R+ Y I++ L V S E +++ ++N Y+
Sbjct: 1542 ARIALKEMKRDPQTKPKYGQRIKYFIINNPQSQRLYDCVVSVNEFMKNYRHQINLNEYLE 1601
Query: 1053 RVIIPPLERCFLLLGTPVLPWYKNLPR---KLHVYLPSVLNERKKKSTISQYFASVNCVC 1109
+ I L R F + W + + + K H L ++ N+++K S++
Sbjct: 1602 KQINSALGRLFSTFDVDIQDWVQRIKKSEIKSHNIL-AIQNKQQKGGLSSEFQKQKKQFQ 1660
Query: 1110 CNQMTQNNKGVCDACLNQT--QLLGTCL 1135
N K +C AC N+T Q+ CL
Sbjct: 1661 LNHYYL--KEICIACSNKTKNQICENCL 1686
Score = 638 (229.6 bits), Expect = 2.5e-63, Sum P(2) = 2.5e-63
Identities = 148/472 (31%), Positives = 244/472 (51%)
Query: 725 LKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRV--- 781
+ +L + + ++P+ VAFV KS+R G+L ++ E TR +K +M +YK N +
Sbjct: 1275 IDELMKDIFVAPNKVAFVKKSVREGVLSQITHEFFFTRQFIKGNMGKYKQNPLYNHIYNK 1334
Query: 782 LHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCR 841
L RQ LKL V +GYT A FSGRMP ++ DS++ G+ L +AI +NN+ KW +
Sbjct: 1335 LQQRQKSLKLFMCVIFGYTGATFSGRMPLGDLADSIIQIGKFLLNQAINLINNSKKWGAQ 1394
Query: 842 VVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYV 901
V+YGDTDS+FV G + +A +IGKEI KLK+EK YQ ++ TKKRY
Sbjct: 1395 VIYGDTDSVFVNIKGVSVNDAIKIGKEIESEVSKMFPYPLKLKYEKTYQNLVILTKKRYA 1454
Query: 902 GYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSK 961
G+ E + D+P +EAKG+E +R+DGC A+S I+K L L + K+LS +K Y+ ++ K
Sbjct: 1455 GFFVEN-ETDEPKFEAKGLEVMRKDGCQALSIIMKNCLETLLKNKNLSAIKLYLNGEWQK 1513
Query: 962 IISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSG 1021
+++ + S +D+ +KE + + P P +A + + DP+ +P+ +R+ Y I++
Sbjct: 1514 LLNDQFSYRDLIISKECKLENYTMPP---PHARIALKEMKRDPQTKPKYGQRIKYFIINN 1570
Query: 1022 APGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPR-- 1079
L V S E +++ ++N Y+ + I L R F + W + + +
Sbjct: 1571 PQSQRLYDCVVSVNEFMKNYRHQINLNEYLEKQINSALGRLFSTFDVDIQDWVQRIKKSE 1630
Query: 1080 -KLHVYLP-----------SVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQ 1127
K H L S ++KK+ ++ Y+ C+ C+ T+N +C+ CL
Sbjct: 1631 IKSHNILAIQNKQQKGGLSSEFQKQKKQFQLNHYYLKEICIACSNKTKNQ--ICENCLQD 1688
Query: 1128 TQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND---CISLDCPVLYRK 1176
L L K + + ++ CT C S + CI +C + K
Sbjct: 1689 PSALIFILTQKKKINEMKLQKLIDKCTNCCNLSQIEEMPQCIQYECYTYFEK 1740
Score = 103 (41.3 bits), Expect = 2.5e-63, Sum P(2) = 2.5e-63
Identities = 42/143 (29%), Positives = 70/143 (48%)
Query: 371 NLNE-VTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGII 429
N N+ +T + E+ +T+ EI A S + PDP+ D + I + L R GII
Sbjct: 851 NQNKKLTQYHED--ITMYTFEIFAKSTPDMLPDPSSDPINFIVFDLENFK----RTQGII 904
Query: 430 LIGQ---ESELPEVRT------KPIQMHFVS-NEKELFSIFIENVRQWDPDILIGYEIET 479
L+ + + +VR + V+ NE+EL FI+ + ++ DI+ G++IE
Sbjct: 905 LVDEINCHEPIDKVRKYYGFNDSMFKTIIVTKNEEELLLTFIKQIHIFNVDIITGWDIEK 964
Query: 480 LSWGYLLERGYVLGLNLNQELSR 502
S Y R + LG+++ LSR
Sbjct: 965 KSLFYFSHRCWQLGIDVMDILSR 987
Score = 54 (24.1 bits), Expect = 3.6e-58, Sum P(2) = 3.6e-58
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 494 LNLNQEL--SRITEVEKRNSSRDEVKNTQLQM-PGRIVINLWRLLRHEVNLQSYTFEN 548
+N Q+ +I E +K+ ++ D+ +NTQ+Q P +I + L+ + +NL + N
Sbjct: 1 MNQKQDFVQQQIQEKDKQMNALDKFENTQIQQQPDQISLFLFSHEQIALNLPGHPASN 58
Score = 39 (18.8 bits), Expect = 1.6e-91, Sum P(2) = 1.6e-91
Identities = 10/47 (21%), Positives = 19/47 (40%)
Query: 405 YDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVS 451
+ E K F Y CP + II ++ + P+ +++S
Sbjct: 788 FQETKQRFRYQKKCPSFKQISADIIKSNKKQNKQLLNVTPVTKNWLS 834
>RGD|1307087 [details] [associations]
symbol:Rev3l "REV3-like, polymerase (DNA directed), zeta,
catalytic subunit" species:10116 "Rattus norvegicus" [GO:0006281
"DNA repair" evidence=ISO] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO] InterPro:IPR006134 Pfam:PF00136 RGD:1307087
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000112263
OrthoDB:EOG4NVZJD GO:GO:0016035 IPI:IPI00361212 UniGene:Rn.8189
EMBL:BC086428 ProteinModelPortal:Q5RJZ4 STRING:Q5RJZ4
UCSC:RGD:1307087 InParanoid:Q5RJZ4 ArrayExpress:Q5RJZ4
Genevestigator:Q5RJZ4 Uniprot:Q5RJZ4
Length = 314
Score = 901 (322.2 bits), Expect = 2.5e-90, P = 2.5e-90
Identities = 168/314 (53%), Positives = 227/314 (72%)
Query: 882 KLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCL 941
KLKFEKVY PC+LQTKKRYVGYMYET DQ P+++AKGIETVRRD CPAVSKIL++SL L
Sbjct: 1 KLKFEKVYLPCVLQTKKRYVGYMYETLDQKDPVFDAKGIETVRRDSCPAVSKILERSLKL 60
Query: 942 LFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVL 1001
LFET+D+S++K+YV++Q K++ G+ S+QD FAKEYRG Y+PGACVPAL L R+ +
Sbjct: 61 LFETRDISLIKQYVQRQCMKLVEGKASIQDFIFAKEYRGSFSYRPGACVPALELTRKMLA 120
Query: 1002 TDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
D R+EPRV ERVPYVIV G PGLPLI+L++ P E+LQD +LRLN+ YYIT+ I+PPL R
Sbjct: 121 YDRRSEPRVGERVPYVIVYGTPGLPLIQLIRRPAEVLQDPTLRLNATYYITKQILPPLAR 180
Query: 1062 CFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVC 1121
F L+G V WY+ LPR S + +K TISQYF +++C C+ +TQ+ G+C
Sbjct: 181 IFSLIGIDVFSWYQELPRIQKATSSSRSDLEGRKGTISQYFTTLHCPVCDGLTQH--GIC 238
Query: 1122 DACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSN-DCISLDCPVLYRKTQIT 1180
C +Q Q + L +I+ +R Q+Q+ K+C C G + C+SL+CPVL++ +++
Sbjct: 239 SQCRSQPQHVAIILNQEIRELERQQEQLVKICRNCTGSFDRHIPCVSLNCPVLFKLSRVN 298
Query: 1181 RDLDQLSYVLSLCD 1194
R+L + Y+ L D
Sbjct: 299 RELSKAPYLRQLLD 312
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 609 (219.4 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 165/541 (30%), Positives = 258/541 (47%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVS 721
+++EP Y PI LDF SLYPS+++A+N C+ST L S
Sbjct: 591 IVIEPTPGFYDTPIATLDFTSLYPSIMMAHNLCYSTLL---------------------S 629
Query: 722 IRSLKKLQQKL-TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
KKL ++ T +P G F+ + G+LP++L+E+L R K +K K + +
Sbjct: 630 AEEAKKLPPEIYTTTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEK-DPFKRA 688
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IE---TVNN 834
VL RQL LK+ AN YG+T A G++PC+E+ SV S GRE L K +E T+ N
Sbjct: 689 VLDGRQLALKISANSVYGFTGARV-GKLPCLEISRSVTSFGREMLDKTKKIVEERYTIAN 747
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
K ++YGDTDS+ V KT EA E+G++ A L FEKVY P +L
Sbjct: 748 GYKHDAVIIYGDTDSVMVKFGVKTVAEAMEMGRDAAKFVTTTFIRPINLDFEKVYYPYLL 807
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
KK+Y G +Y T + KG+E VRRD C V ++ L + KDL +EY
Sbjct: 808 MAKKKYAG-LYWTKPDIHDRMDVKGLEMVRRDTCLLVRNVVSTILKKILIEKDLKSAEEY 866
Query: 955 VEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERV 1014
+ S ++ R+ + + K + YK G + LAR+ DP P + +RV
Sbjct: 867 TKSVISDLLQNRLDLSMLVITKAL-SKTQYK-GKVIHN-ELARKMRARDPATAPNLGDRV 923
Query: 1015 PYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLPW 1073
PYV++ G+ G P+ + + P L+ + L L+ +YY+ + + PL R F ++ P L +
Sbjct: 924 PYVVIQGSKGAPIYEKAEDPLYALEHNIL-LDCQYYLDKQLKAPLIRIFKPIMSNPDLIF 982
Query: 1074 YKNLPRKLHVYLPSVLNERKKK--STISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLL 1131
+ R + S L++ K T+ + +NC ++T C C ++ L
Sbjct: 983 HGEHTRTI---AQSTLSDNNKGFFGTLKKKKVCMNCP--KELTDTESTTCINCQHKEASL 1037
Query: 1132 GTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQITRDLDQLSYVL 1190
K+ + + + C C G C + DCP+ Y +T++ DL + L
Sbjct: 1038 YQTSLEKVTSLETKFSEAWTQCQRCSGSLHQPVLCSNRDCPIFYMRTKVQLDLIEAKKTL 1097
Query: 1191 S 1191
+
Sbjct: 1098 N 1098
Score = 253 (94.1 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 88/326 (26%), Positives = 149/326 (45%)
Query: 386 VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPI 445
+L+ +I R + P+P D V I + E I + S + P
Sbjct: 317 ILSFDIECAGRKGVFPEPEKDPVIQISNIVKNNGDAEPFIKNIFTLKGCSSIVGAHVIP- 375
Query: 446 QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI-T 504
H E++L + + V + DPD++IGY I YL+ R L + L RI T
Sbjct: 376 --H--KREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPEFALLGRIKT 431
Query: 505 EVEKRNSSRDEVKNT------QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ K S+R N ++ MPGR +L + ++ + L SY+ N+ H L E+
Sbjct: 432 TISKIKSTRFSSSNLGTRESKEISMPGRTQFDLMQAIQRDHKLTSYSLNNVSAHFLKEQK 491
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFY 617
+ +++ + + V Y I+ + +RL+++L + +EMAR+ G+
Sbjct: 492 EDVHFSIISDLQNGTDDDRRRLAV--YCIKDAVLPMRLLDKLMILINYTEMARVTGVPLS 549
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIV 677
+L RG +V S + R + + NF+ P+ K + +++EP Y PI
Sbjct: 550 YLLGRGEGIKVLSQLYRKAMVENFLI--PTYKVTGKGEKFQGA-IVIEPTPGFYDTPIAT 606
Query: 678 LDFQSLYPSVIIAYNYCFSTCLGRVE 703
LDF SLYPS+++A+N C+ST L E
Sbjct: 607 LDFTSLYPSIMMAHNLCYSTLLSAEE 632
Score = 43 (20.2 bits), Expect = 3.5e-77, Sum P(3) = 3.5e-77
Identities = 10/24 (41%), Positives = 13/24 (54%)
Query: 322 KSSQIDFNPDLFKSFIRKQLETPK 345
K S + +NP+ FIR L PK
Sbjct: 201 KKSIMGYNPNPLSDFIRITLILPK 224
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 586 (211.3 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 165/541 (30%), Positives = 263/541 (48%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG+++
Sbjct: 585 VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTED---------- 634
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
+ +K +P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 635 --QFIK--------TPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAK-ETDPLRRQ 683
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IET---VNN 834
VL RQL LK+ AN YG+T A GR+PC+E+ SV GR+ ++K +ET V N
Sbjct: 684 VLDGRQLALKVSANSVYGFTGAQV-GRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVEN 742
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 743 GYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLL 802
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL L +D S +
Sbjct: 803 ISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAH 862
Query: 955 VEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
+ S ++ RI + + KE R A Y + LA + DP + P + +R
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 920
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLP 1072
VPYVI+S A G+ + P +L+ S L ++++YY+ + + PL R F +LG
Sbjct: 921 VPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILGEGRAE 979
Query: 1073 WYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNC-VCCNQMTQNNKGVCDACLNQTQLL 1131
L R H +VL K + + NC + C + + VC C + L
Sbjct: 980 AV--LLRGDHTRCKTVLTG--KVGGLLAFAKRRNCCIGCRTVLSHQGAVCKFCQPRESEL 1035
Query: 1132 GTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYV 1189
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +
Sbjct: 1036 YQKEVSHLSALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQERL 1094
Query: 1190 L 1190
L
Sbjct: 1095 L 1095
Score = 267 (99.0 bits), Expect = 2.9e-76, Sum P(2) = 2.9e-76
Identities = 99/358 (27%), Positives = 169/358 (47%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 309 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 365
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER-------GY-VLG- 493
K +Q + E++L + +R DPD++ GY I+ YL+ R G+ +LG
Sbjct: 366 K-VQSY--EREEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGR 422
Query: 494 -LNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYH 552
+ L + R + + R + R + K + M GR+ +++ ++L E L+SYT + +H
Sbjct: 423 VIGLRSNI-RESSFQSRQTGRRDSK--VVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFH 479
Query: 553 VLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARL 611
L E+ ++T + + V Y ++ + +RL+E+L + EMAR+
Sbjct: 480 FLGEQKEDVQHSIITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARV 537
Query: 612 FGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLY 671
G+ +LSRG Q +V S +LR + + P +K + ++EP Y
Sbjct: 538 TGVPLGYLLSRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGGEDYTGAT--VIEPLKGYY 593
Query: 672 TDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIR 723
PI LDF SLYPS+++A+N C++T L G + LG++ D F P G + S+R
Sbjct: 594 DVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKASVR 651
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 583 (210.3 bits), Expect = 3.9e-76, Sum P(2) = 3.9e-76
Identities = 164/540 (30%), Positives = 262/540 (48%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG+++ F
Sbjct: 586 VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTED-QF------- 637
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
IR+ P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 638 -IRT-----------PTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAK-ETDPLRRQ 684
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IE---TVNN 834
VL RQL LK+ AN YG+T A G++PC+E+ SV GR+ ++K +E TV N
Sbjct: 685 VLDGRQLALKVSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 743
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 744 GYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLL 803
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL L +D +
Sbjct: 804 ISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAH 863
Query: 955 VEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERV 1014
+ S ++ RI + + KE A G + LA + DP + P + +RV
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRAASDYAGKQAH-VELAERMRKRDPGSAPSLGDRV 922
Query: 1015 PYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLPW 1073
PYVI+S A G+ + P +L+ S L ++++YY+ + + PL R F +LG
Sbjct: 923 PYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILGEGRAEA 981
Query: 1074 YKNLPRKLHVYLPSVLNERKKKSTISQYFASVNC-VCCNQMTQNNKGVCDACLNQTQLLG 1132
L R H +VL K + + NC + C + + VC+ C + L
Sbjct: 982 V--LLRGDHTRCKTVLTG--KVGGLLAFAKRRNCCIGCRTVLSHQGAVCEFCQPRESELY 1037
Query: 1133 TCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYVL 1190
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +L
Sbjct: 1038 QKEVSHLNALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQEQLL 1096
Score = 269 (99.8 bits), Expect = 3.9e-76, Sum P(2) = 3.9e-76
Identities = 98/355 (27%), Positives = 167/355 (47%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 366
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
K +Q + E++L + +R DPD++ GY I+ YL+ R L + L R
Sbjct: 367 K-VQSY--EKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGR 423
Query: 503 ITEV--EKRNSSRDEV----KNTQL-QMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
+ + R+SS ++T++ M GR+ +++ ++L E L+SYT + +H L
Sbjct: 424 VAGLCSNIRDSSFQSKQTGRRDTKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLG 483
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGI 614
E+ ++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 484 EQKEDVQHSIITDLQNGNDQTRRRLAV--YCLKDAYLPLRLLERLMVLVNAVEMARVTGV 541
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+LSRG Q +V S +LR + + P +K + ++EP Y P
Sbjct: 542 PLSYLLSRGQQVKVVSQLLRQAMHEGLLM--PVVKSEGGEDYTGAT--VIEPLKGYYDVP 597
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIR 723
I LDF SLYPS+++A+N C++T L G + LG++ D F P G + S+R
Sbjct: 598 IATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVR 652
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 576 (207.8 bits), Expect = 9.1e-76, Sum P(2) = 9.1e-76
Identities = 163/541 (30%), Positives = 262/541 (48%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG++
Sbjct: 586 VIEPLKGYYDVPITTLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTAD---------- 635
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
+ +K +P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 636 --QFIK--------TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAK-ETDPLRRQ 684
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IE---TVNN 834
VL RQL LK+ AN YG+T A G++PC+E+ SV GR+ ++K +E TV N
Sbjct: 685 VLDGRQLALKVSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 743
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 744 GYGTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPAPIRLEFEKVYFPYLL 803
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL L +D + +
Sbjct: 804 ISKKRYAGLLFSSRPDTHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPAGAVAH 863
Query: 955 VEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
+ S ++ RI + + KE R A Y + LA + DP + P + +R
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 921
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLP 1072
VPYVI+S A G+ + P +L+ S L ++++YY+ + + PL R F +LG
Sbjct: 922 VPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILGEGRAE 980
Query: 1073 WYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNC-VCCNQMTQNNKGVCDACLNQTQLL 1131
L R H +VL K + + NC + C + + VC C + L
Sbjct: 981 AV--LLRGDHTRCKTVLTG--KVGGLLAFAKRRNCCIGCRTVLSHQGAVCKFCQPRESEL 1036
Query: 1132 GTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYV 1189
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +
Sbjct: 1037 YQKEVSHLNALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQEQL 1095
Query: 1190 L 1190
L
Sbjct: 1096 L 1096
Score = 273 (101.2 bits), Expect = 9.1e-76, Sum P(2) = 9.1e-76
Identities = 97/355 (27%), Positives = 166/355 (46%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 366
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
K +Q + E++L + +R DPD++ GY I+ YL+ R L + L R
Sbjct: 367 K-VQSY--EREEDLLQAWSNFIRVMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGR 423
Query: 503 ITEVEK--RNSSRDEVKNTQ-----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
++ + R+SS + + + M GR+ +++ ++L E L+SYT + +H L
Sbjct: 424 VSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLG 483
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGI 614
E+ ++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 484 EQKEDVQHSIITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGV 541
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+LSRG Q +V S +LR + + P +K + ++EP Y P
Sbjct: 542 PLGYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVP 597
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIR 723
I LDF SLYPS+++A+N C++T L G + LG++ D F P G + S+R
Sbjct: 598 ITTLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTADQFIKTPTGDEFVKTSVR 652
>WB|WBGene00008645 [details] [associations]
symbol:F10C2.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0035188 "hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 577 (208.2 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 167/547 (30%), Positives = 270/547 (49%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSI 722
+++P Y +PI LDF SLYPS++IA+N C++T L + GV + D I
Sbjct: 558 VIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQ--GVENE------DY---I 606
Query: 723 RSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVL 782
R+ PSG F KS R G+LP++L++IL R K MK K + V
Sbjct: 607 RT-----------PSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFK-RMVY 654
Query: 783 HARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IETV--NNTSK 837
+ RQL LK+ AN YG+T A G++PC+E+ SV + GR+ + +E +
Sbjct: 655 NGRQLALKISANSVYGFTGATV-GKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALD 713
Query: 838 WQC----RVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCI 893
+C +V+YGDTDS+ V +T +A EIG + A KL+FEKVY P +
Sbjct: 714 GKCPADAKVIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYL 773
Query: 894 LQTKKRYVGYMYETAD-QDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVK 952
L KKRY G + D DK + KG+ETVRRD CP V+K+L L L +D
Sbjct: 774 LINKKRYAGLYFTKPDVHDK--MDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSAL 831
Query: 953 EYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSE 1012
++ ++ S ++ +I + + +KE ++G K A + LA + D + PR+ +
Sbjct: 832 DFAKRTISDLLCNKIDISLLIISKELT-KSGDKYQAKQAHVELAARMKKRDAGSAPRLGD 890
Query: 1013 RVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVL 1071
RVPYV V+ A +P + + P +LQ++ + L++++Y+T + PL R F +LG
Sbjct: 891 RVPYVFVAAAKNVPAYERAEDPTFVLQNN-IPLDTKHYLTNQLAKPLARIFEPILGDRA- 948
Query: 1072 PWYKNLPRKLHVYLPSVLNERKKKSTISQYFA-SVNCVCCNQM---TQNNKGVCDACLNQ 1127
K L H + +V+ + K ++ + S C+ C + ++ VC C +
Sbjct: 949 --EKILVEGEHTRVRTVV--QSKVGGLAAFTTKSATCLGCKSVLPRAESENAVCKHCEPK 1004
Query: 1128 TQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG-RSTSND---CISLDCPVLYRKTQITRDL 1183
L T ++ ++ ++ T C T D C + DCP+ Y + ++ +L
Sbjct: 1005 ---LPTIFASRMNTMHELENHFGRLWTECQNCAKTMQDKVNCSARDCPIYYMREKVRNEL 1061
Query: 1184 DQLSYVL 1190
+ S V+
Sbjct: 1062 SEASAVI 1068
Score = 271 (100.5 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 81/261 (31%), Positives = 131/261 (50%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 511
NEK L + E VR+ DPDI+ GY I Y+L+R VL L L R + EK +
Sbjct: 343 NEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR--QKEKGSV 400
Query: 512 SRDEV---K------NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 562
RD K N + + GRI+ ++ +++ + L+SYT ++ Y L E+
Sbjct: 401 VRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVE 460
Query: 563 WKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
++ + R L ++ + YL +RL+++L I EMAR+ G+
Sbjct: 461 HNIIPDLQRGDEQTRRRLAQYCLKDAYLP-----LRLLDKLMSIINYIEMARVTGVPMNF 515
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
+L++G Q ++ S+MLR + NNF P I+ + +++P Y +PI L
Sbjct: 516 LLTKGQQIKILSMMLRRCKQNNFFL--PVIEANSGDGEGYEGATVIDPIRGFYNEPIATL 573
Query: 679 DFQSLYPSVIIAYNYCFSTCL 699
DF SLYPS++IA+N C++T L
Sbjct: 574 DFASLYPSIMIAHNLCYTTLL 594
Score = 42 (19.8 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 520 QLQMPGRIVINLWRL-LRHEVNL 541
Q Q+PG++V NL + + H NL
Sbjct: 144 QAQLPGKVVDNLVHVEIVHGENL 166
>UNIPROTKB|P90829 [details] [associations]
symbol:F10C2.4 "DNA polymerase delta catalytic subunit"
species:6239 "Caenorhabditis elegans" [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 577 (208.2 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 167/547 (30%), Positives = 270/547 (49%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSI 722
+++P Y +PI LDF SLYPS++IA+N C++T L + GV + D I
Sbjct: 558 VIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLLKSPQ--GVENE------DY---I 606
Query: 723 RSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVL 782
R+ PSG F KS R G+LP++L++IL R K MK K + V
Sbjct: 607 RT-----------PSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEKDEFK-RMVY 654
Query: 783 HARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IETV--NNTSK 837
+ RQL LK+ AN YG+T A G++PC+E+ SV + GR+ + +E +
Sbjct: 655 NGRQLALKISANSVYGFTGATV-GKLPCLEISQSVTAFGRKMIDMTKLEVERIYKKGALD 713
Query: 838 WQC----RVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCI 893
+C +V+YGDTDS+ V +T +A EIG + A KL+FEKVY P +
Sbjct: 714 GKCPADAKVIYGDTDSVMVKFGVETVAQAMEIGLDAAKEVSKIFTPPIKLEFEKVYSPYL 773
Query: 894 LQTKKRYVGYMYETAD-QDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVK 952
L KKRY G + D DK + KG+ETVRRD CP V+K+L L L +D
Sbjct: 774 LINKKRYAGLYFTKPDVHDK--MDCKGLETVRRDNCPLVAKVLGVCLEKLLIERDQQSAL 831
Query: 953 EYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSE 1012
++ ++ S ++ +I + + +KE ++G K A + LA + D + PR+ +
Sbjct: 832 DFAKRTISDLLCNKIDISLLIISKELT-KSGDKYQAKQAHVELAARMKKRDAGSAPRLGD 890
Query: 1013 RVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVL 1071
RVPYV V+ A +P + + P +LQ++ + L++++Y+T + PL R F +LG
Sbjct: 891 RVPYVFVAAAKNVPAYERAEDPTFVLQNN-IPLDTKHYLTNQLAKPLARIFEPILGDRA- 948
Query: 1072 PWYKNLPRKLHVYLPSVLNERKKKSTISQYFA-SVNCVCCNQM---TQNNKGVCDACLNQ 1127
K L H + +V+ + K ++ + S C+ C + ++ VC C +
Sbjct: 949 --EKILVEGEHTRVRTVV--QSKVGGLAAFTTKSATCLGCKSVLPRAESENAVCKHCEPK 1004
Query: 1128 TQLLGTCLYYKIQAWQRSQDQVNKVCTTCVG-RSTSND---CISLDCPVLYRKTQITRDL 1183
L T ++ ++ ++ T C T D C + DCP+ Y + ++ +L
Sbjct: 1005 ---LPTIFASRMNTMHELENHFGRLWTECQNCAKTMQDKVNCSARDCPIYYMREKVRNEL 1061
Query: 1184 DQLSYVL 1190
+ S V+
Sbjct: 1062 SEASAVI 1068
Score = 271 (100.5 bits), Expect = 9.6e-76, Sum P(2) = 9.6e-76
Identities = 81/261 (31%), Positives = 131/261 (50%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 511
NEK L + E VR+ DPDI+ GY I Y+L+R VL L L R + EK +
Sbjct: 343 NEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR--QKEKGSV 400
Query: 512 SRDEV---K------NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 562
RD K N + + GRI+ ++ +++ + L+SYT ++ Y L E+
Sbjct: 401 VRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVE 460
Query: 563 WKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
++ + R L ++ + YL +RL+++L I EMAR+ G+
Sbjct: 461 HNIIPDLQRGDEQTRRRLAQYCLKDAYLP-----LRLLDKLMSIINYIEMARVTGVPMNF 515
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 678
+L++G Q ++ S+MLR + NNF P I+ + +++P Y +PI L
Sbjct: 516 LLTKGQQIKILSMMLRRCKQNNFFL--PVIEANSGDGEGYEGATVIDPIRGFYNEPIATL 573
Query: 679 DFQSLYPSVIIAYNYCFSTCL 699
DF SLYPS++IA+N C++T L
Sbjct: 574 DFASLYPSIMIAHNLCYTTLL 594
Score = 42 (19.8 bits), Expect = 1.3e-51, Sum P(2) = 1.3e-51
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 520 QLQMPGRIVINLWRL-LRHEVNL 541
Q Q+PG++V NL + + H NL
Sbjct: 144 QAQLPGKVVDNLVHVEIVHGENL 166
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 568 (205.0 bits), Expect = 2.4e-74, Sum P(2) = 2.4e-74
Identities = 160/541 (29%), Positives = 258/541 (47%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG+ F
Sbjct: 582 VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPD-EF------- 633
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
+K +P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 634 ----IK--------TPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ-ETDPLRRQ 680
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IET---VNN 834
VL RQL LK+ N YG+T A G++PC+E+ SV GR+ ++K +ET + N
Sbjct: 681 VLDGRQLALKVSPNSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLEN 739
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 740 GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 799
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL + +D +
Sbjct: 800 ISKKRYAGLLFSSRSDAHDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAH 859
Query: 955 VEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
+ S ++ RI + + KE R A Y + LA + DP + P + +R
Sbjct: 860 AKDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPNLGDR 917
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLP 1072
VPYVI+ A G+ + P +L+ S L ++++YY+ + + PL R F +LG
Sbjct: 918 VPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILGEGRAE 976
Query: 1073 WYKNLPRKLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKGVCDACLNQTQLL 1131
L R H +VL K + + N C+ C + + VC C + L
Sbjct: 977 --SVLLRGDHTRCKTVLTS--KVGGLLAFTKRRNSCIGCRSVIDHQGAVCKFCQPRESEL 1032
Query: 1132 GTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYV 1189
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +
Sbjct: 1033 YQKEVSHLNALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQERL 1091
Query: 1190 L 1190
L
Sbjct: 1092 L 1092
Score = 268 (99.4 bits), Expect = 2.4e-74, Sum P(2) = 2.4e-74
Identities = 98/355 (27%), Positives = 169/355 (47%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 306 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 362
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
K +Q + E++L + + DPD++ GY I+ YL+ R L ++ L R
Sbjct: 363 K-VQSY--EREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGR 419
Query: 503 ITEVEK--RNSSRD--EV--KNTQL-QMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
+T + R+SS +V +++++ M GR+ +++ ++L E L+SYT + +H L
Sbjct: 420 VTGLRSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLG 479
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGI 614
E+ ++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 480 EQKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEMARVTGV 537
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+LSRG Q +V S +LR + + P +K + ++EP Y P
Sbjct: 538 PLGYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVP 593
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIR 723
I LDF SLYPS+++A+N C++T L G + LG+ D F P G + S+R
Sbjct: 594 IATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKASVR 648
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 568 (205.0 bits), Expect = 2.4e-74, Sum P(2) = 2.4e-74
Identities = 160/541 (29%), Positives = 258/541 (47%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG+ F
Sbjct: 582 VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPD-EF------- 633
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
+K +P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 634 ----IK--------TPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ-ETDPLRRQ 680
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IET---VNN 834
VL RQL LK+ N YG+T A G++PC+E+ SV GR+ ++K +ET + N
Sbjct: 681 VLDGRQLALKVSPNSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVETKYTLEN 739
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 740 GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 799
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL + +D +
Sbjct: 800 ISKKRYAGLLFSSRSDAHDRMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAH 859
Query: 955 VEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
+ S ++ RI + + KE R A Y + LA + DP + P + +R
Sbjct: 860 AKDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPNLGDR 917
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLP 1072
VPYVI+ A G+ + P +L+ S L ++++YY+ + + PL R F +LG
Sbjct: 918 VPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILGEGRAE 976
Query: 1073 WYKNLPRKLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKGVCDACLNQTQLL 1131
L R H +VL K + + N C+ C + + VC C + L
Sbjct: 977 --SVLLRGDHTRCKTVLTS--KVGGLLAFTKRRNSCIGCRSVIDHQGAVCKFCQPRESEL 1032
Query: 1132 GTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYV 1189
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +
Sbjct: 1033 YQKEVSHLNALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQERL 1091
Query: 1190 L 1190
L
Sbjct: 1092 L 1092
Score = 268 (99.4 bits), Expect = 2.4e-74, Sum P(2) = 2.4e-74
Identities = 98/355 (27%), Positives = 169/355 (47%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 306 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 362
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
K +Q + E++L + + DPD++ GY I+ YL+ R L ++ L R
Sbjct: 363 K-VQSY--EREEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGR 419
Query: 503 ITEVEK--RNSSRD--EV--KNTQL-QMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
+T + R+SS +V +++++ M GR+ +++ ++L E L+SYT + +H L
Sbjct: 420 VTGLRSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLG 479
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGI 614
E+ ++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 480 EQKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEMARVTGV 537
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+LSRG Q +V S +LR + + P +K + ++EP Y P
Sbjct: 538 PLGYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVP 593
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIR 723
I LDF SLYPS+++A+N C++T L G + LG+ D F P G + S+R
Sbjct: 594 IATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKASVR 648
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 524 (189.5 bits), Expect = 2.1e-70, Sum P(2) = 2.1e-70
Identities = 147/488 (30%), Positives = 242/488 (49%)
Query: 719 NVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAAL 778
N I L K + FV +++ G+LP +++E++ R VK MK + N
Sbjct: 624 NDEISDLNKNDITTVPGKNNFKFVKGNVKRGVLPLIVEELIRARKNVKAMMKN-EQNPIT 682
Query: 779 QRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETV------ 832
+ VL+ RQL LK+ AN YGYT A G++PC+E+ S+ + GR ++K ETV
Sbjct: 683 KMVLNGRQLALKISANSVYGYTGAAAGGQLPCLEIATSITTFGRSMIEKTKETVEAYYCK 742
Query: 833 NNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPC 892
NN + VVYGDTDS+ V EA +GK+ A KL+FEKVY P
Sbjct: 743 NNGFEHNATVVYGDTDSVMVKFGTNDVGEAMRLGKDAAERISKEFLHPIKLEFEKVYCPY 802
Query: 893 ILQTKKRYVGYMYETADQ-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVV 951
+L KKRY G +Y ++ DK + KGIETVRRD C + ++++ L L KDL+
Sbjct: 803 LLLNKKRYAGLLYTNPNKHDK--MDCKGIETVRRDFCILIQQMMETVLNKLLIEKDLNSA 860
Query: 952 KEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVS 1011
EY + + +++ I + + K G+A Y+ +P + LA++ D P V
Sbjct: 861 IEYTKSKIKDLLTNNIDMSLLVVTKSL-GKAEYETR--LPHVELAKKLKQRDSATAPNVG 917
Query: 1012 ERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVL 1071
+RV Y+I+ G G + + P +L D++L ++ +Y+ I PL R F + ++
Sbjct: 918 DRVSYIIIKGTKGQAQYERAEDPLYVL-DNNLSIDHNHYLD-AIKNPLSRIFEV----IM 971
Query: 1072 PWYKNLPRKLHVYLPSVLNERKKKSTISQYFA-SVNCVCCNQMTQNNKGVCDACLNQTQL 1130
+L H ++L ++ +S++ ++ C+ CN + +C+ C +
Sbjct: 972 QNSDSLFCGEHTRHKTILTS--SQTALSKFLKKTIRCIGCNSSIKKPP-LCNHCKTNKEF 1028
Query: 1131 LGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSN---D--CISLDCPVLYRKTQITRDLDQ 1185
+ KI+ + Q++ ++ T C R N D C++ DCP+ YR+ +I +D+
Sbjct: 1029 --SIYMQKIKDLKLKQNEFFQLWTECQ-RCQGNLHIDVICMNRDCPIFYRRAKIKKDVAN 1085
Query: 1186 LS-YVLSL 1192
L V SL
Sbjct: 1086 LQEQVTSL 1093
Score = 277 (102.6 bits), Expect = 2.1e-70, Sum P(2) = 2.1e-70
Identities = 79/258 (30%), Positives = 131/258 (50%)
Query: 451 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITE----V 506
++EK + + E V + DPD L GY I Y+L RG L L + + RI V
Sbjct: 369 NDEKTMLEAWNEFVIRIDPDFLTGYNIINFDIPYILNRGTALNLKKLKYIGRIKNIPSLV 428
Query: 507 EKRNSSRDEV---KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 563
+ N S + + ++ + GRI +++ L++ + L+SYT + + L E+ +
Sbjct: 429 KDANFSSKQFGTHETKEININGRIQFDVYDLIKRDYRLKSYTLNYVSFEFLKEQKEDVHY 488
Query: 564 KLLTCWWEHRTHLYKWMTVEHYLIRVTGII--RLIEQLDFIGRTSEMARLFGIQFYEVLS 621
++ + K + Y I+ G++ RLI++L FI EMAR+ G F +L+
Sbjct: 489 SIMNDLQNENSESRK--RIATYCIK-DGLLPLRLIDKLLFIYNYVEMARVTGTPFVYLLT 545
Query: 622 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQ 681
RG Q +V S + R + N++ S IK + + + +LEP Y +PI LDF
Sbjct: 546 RGQQIKVTSQLYRKCKELNYIIPSTYIKVNNNDKFEGAT--VLEPIKGYYIEPISTLDFA 603
Query: 682 SLYPSVIIAYNYCFSTCL 699
SLYPS++IA+N C+ST +
Sbjct: 604 SLYPSIMIAHNLCYSTLI 621
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 722 (259.2 bits), Expect = 4.1e-68, Sum P(2) = 4.1e-68
Identities = 235/824 (28%), Positives = 392/824 (47%)
Query: 386 VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPI 445
+L+ +I R + P+ D V I + + +R+ I + +E + +
Sbjct: 296 ILSFDIECAGRKGIFPEAKIDPVIQIANMVIR---QGEREPFIRNVFTLNECAPIIGSQV 352
Query: 446 QMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITE 505
H E ++ + VR+ DPDIL GY I + YLL R L + + L RI
Sbjct: 353 LCH--DKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRNFEYLGRIKN 410
Query: 506 V-----EKRNSSRD--EVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-R 557
+ E+ S+ +N + GR+ +L +L + L+SYT + YH L E +
Sbjct: 411 IRSVIKEQMLQSKQMGRRENQYVNFEGRVPFDLLFVLLRDYKLRSYTLNAVSYHFLQEQK 470
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQF 616
+H ++T + + + Y ++ + +RL+E+L I EMAR+ G+
Sbjct: 471 EDVHH-SIITDLQNGDEQTRRRLAM--YCLKDAYLPLRLLEKLMAIVNYMEMARVTGVPL 527
Query: 617 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 676
+L+RG Q +V S +LR ++ F+ PS + E +I EP+ Y DPI
Sbjct: 528 ESLLTRGQQIKVLSQLLRKAKTKGFIM--PSYTSQGSDEQYEGATVI-EPKRGYYADPIS 584
Query: 677 VLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ-KLTIS 735
LDF SLYPS+++A+N C++T + LG G + +R + LQ ++ +
Sbjct: 585 TLDFASLYPSIMMAHNLCYTTLV-----LG-------GTRE---KLRQQENLQDDQVERT 629
Query: 736 PSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANV 795
P+ FV +R G+LP++L+ +L R K +K +++ ++VL RQL LK+ AN
Sbjct: 630 PANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK-VETDPFKRKVLDGRQLALKISANS 688
Query: 796 TYGYTAANFSGRMPCVEVGDSVVSKGR---ETLQKAIE---TVNNTSKWQCRVVYGDTDS 849
YG+T A G++PC+E+ SV + GR E + +E T N + V+YGDTDS
Sbjct: 689 VYGFTGAQV-GKLPCLEISGSVTAYGRTMIEMTKNEVESHYTQANGYENNAVVIYGDTDS 747
Query: 850 MFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETAD 909
+ V KT + + E+G+E A KL+FEKVY P +L KKRY G + D
Sbjct: 748 VMVNFGVKTLERSMELGREAAELVSSKFVHPIKLEFEKVYYPYLLINKKRYAGLYFTRPD 807
Query: 910 Q-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRIS 968
DK + KGIETVRRD P V+ ++ L L +D YV++ + ++ RI
Sbjct: 808 TYDK--MDCKGIETVRRDNSPLVANLMNSCLQKLLIERDPDGAVAYVKQVIADLLCNRID 865
Query: 969 VQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLI 1028
+ + KE + Y A + LA + DP P++ +RVPYVI + A P
Sbjct: 866 ISHLVITKEL-AKTDY--AAKQAHVELAAKMKKRDPGTAPKLGDRVPYVICAAAKNTPAY 922
Query: 1029 KLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLPWYKNLPRKLHVYLPS 1087
+ + P +L++S + +++ YY+ + + PL R F +LG L + H +
Sbjct: 923 QKAEDPLYVLENS-VPIDATYYLEQQLSKPLLRIFEPILGDNA---ESILLKGEHTRTRT 978
Query: 1088 VLNERKKKSTISQYFAS-VNCVCCNQMTQNNKGVCDACL-NQTQLLGTCLYYK-IQAWQR 1144
V+ K ++ + +C+ C + KG ACL + + LY K + A +
Sbjct: 979 VVTS--KVGGLAGFMTKKTSCLGCKSLMP--KGYEQACLCPHCEPRMSELYQKEVGAKRE 1034
Query: 1145 SQDQVNKVCTTC--VGRSTSND--CISLDCPVLYRKTQITRDLD 1184
++ +++ T C S + C + DCP+ Y + ++ DLD
Sbjct: 1035 LEETFSRLWTECQRCQESLHEEVICSNRDCPIFYMRQKVRMDLD 1078
Score = 39 (18.8 bits), Expect = 4.1e-68, Sum P(2) = 4.1e-68
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 306 NKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPK 345
NKD++ EA + K + +N D + +I+ + P+
Sbjct: 159 NKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKISVTLPR 198
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 714 (256.4 bits), Expect = 1.8e-67, Sum P(2) = 1.8e-67
Identities = 243/854 (28%), Positives = 401/854 (46%)
Query: 366 QMGLDNL-NEVTSHV---ENYYLT---VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTC 418
Q+ LD L +++ SH E+ + +L+ +I R P+P +D V I L T
Sbjct: 289 QLELDCLYSDLVSHAAEGEHSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIAN-LVTL 347
Query: 419 PPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIE 478
E V ++ +S P V M F E+++ + + +R+ DPDI+IGY I
Sbjct: 348 QGEGQPFVRNVMT-LKSCSPIVGVDV--MSF-DTERDVLLAWRDFIREVDPDIIIGYNIC 403
Query: 479 TLSWGYLLERGYVLGLNLNQELSRI--TEVEKRN---SSRDEV--KNTQLQMPGRIVINL 531
YL+ER VL + L RI + V R+ SSR ++ + + GR+ +L
Sbjct: 404 KFDLPYLIERAEVLKIVEFPILGRIRNSRVRVRDTTFSSRQYGMRESKDVAVEGRVQFDL 463
Query: 532 WRLLRHEVNLQSYTFENIMYHVLHE-RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVT 590
+ ++ + L SY+ ++ H L E + +H +++ + + + V Y ++
Sbjct: 464 LQAMQRDYKLSSYSLNSVSAHFLGEQKEDVHH-SIISDLQNGNSETRRRLAV--YCLKDA 520
Query: 591 GII-RLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIK 649
+ RL+++L +I EMAR+ G+ +LSRG +V S +LR ++ N V P+IK
Sbjct: 521 YLPQRLLDKLMYIYNYVEMARVTGVPISFLLSRGQSIKVLSQLLRKAKQKNLVI--PNIK 578
Query: 650 QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSD 709
+A + +LE + Y PI LDF SLYPS+++AYN C+ T +
Sbjct: 579 GQASGQDTFEGATVLEARAGFYEKPIATLDFASLYPSIMMAYNLCYCTLVP--------- 629
Query: 710 SFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM 769
P LN+ S+ K +PSG FV ++ GILP++L+E+L R K +
Sbjct: 630 --PEDARKLNLPPESVNK-------TPSGETFVKPDVQKGILPEILEELLAARKRAKADL 680
Query: 770 KEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQ--- 826
KE K + VL RQL LK+ AN YG+T A G++PC+E+ SV S GR+ ++
Sbjct: 681 KEAKDPFE-RAVLDGRQLALKISANSVYGFTGATV-GQLPCLEISSSVTSYGRQMIEHTK 738
Query: 827 KAIE---TVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKL 883
K +E T + V+YGDTDS+ V T ++A ++G+E A KL
Sbjct: 739 KLVEDKFTTLGGYEHNAEVIYGDTDSVMVQFGVSTVEDAMKLGREAADYISGTFIKPIKL 798
Query: 884 KFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943
+FEK+Y P +L +KKRY G +Y T + + KGIETVRRD C V ++ + L +
Sbjct: 799 EFEKIYFPYLLISKKRYAG-LYWTNPEKFDKMDTKGIETVRRDNCLLVKNLVTECLHKIL 857
Query: 944 ETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTD 1003
+D+ +YV+ S ++ R+ + + K + G + LA + D
Sbjct: 858 VDRDVPGAVQYVKNTISDLLMNRVDLSLLVITKGLT-KTGEDYAVKAAHVELAERMRKRD 916
Query: 1004 PRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCF 1063
P V +RVPYVI+ A G + + P +L D+++ ++ +YY+ I PL R F
Sbjct: 917 AATAPTVGDRVPYVIIKAAKGAKAYERSEDPIYVL-DNNIPIDPQYYLENQISKPLLRIF 975
Query: 1064 --LLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVC 1121
+L + + R + + PS N K Q + C ++ +N+ +C
Sbjct: 976 EPILKNASRELLHGSHTRAVSISTPS--NSGIMKFAKKQ-LTCLGCKAV--ISGSNQTLC 1030
Query: 1122 DACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQIT 1180
C + L + + ++ C C G + C S DCP+ YR+ +
Sbjct: 1031 FHCKGREAELYCKTVGNVSELEMLFGRLWTQCQECQGSLHQDVLCTSRDCPIFYRRRKAQ 1090
Query: 1181 RDLDQLSYVLSLCD 1194
+D+ + L D
Sbjct: 1091 KDMAEARVQLQRWD 1104
Score = 43 (20.2 bits), Expect = 1.8e-67, Sum P(2) = 1.8e-67
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 154 LLEEHRCLFSGLSEWRQRVC-LEVTGDATRNV 184
LL+ L S LS WR+ ++ +RNV
Sbjct: 72 LLDRDEALASRLSRWRRPALPADLASGCSRNV 103
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 669 (240.6 bits), Expect = 6.5e-62, Sum P(2) = 6.5e-62
Identities = 203/697 (29%), Positives = 345/697 (49%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +++ +I R + PDP+ D V I + + + S++ V T
Sbjct: 294 LRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRNVFCVDTCSQI--VGT- 350
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
Q++ N+ E+ S + + VR DPD+LIGY I YLL+R L ++ L RI
Sbjct: 351 --QVYEFQNQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGRI 408
Query: 504 TE---VEKRNSSRDEVKNTQ----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
V K + + T+ +PGR+ +++ ++++ + L+SY+ + L E
Sbjct: 409 HNFFSVAKETTFSSKAYGTRESKTTSIPGRLQLDMLQVMQRDFKLRSYSLNAVCSQFLGE 468
Query: 557 RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-RLIEQLDFIGRTSEMARLFGIQ 615
+ + ++T + + + Y ++ + RL+++L +EMAR+ G+
Sbjct: 469 QKEDVHYSIITDLQNGTADSRRRLAI--YCLKDAYLPQRLMDKLMCFVNYTEMARVTGVP 526
Query: 616 FYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPI 675
F +L+RG Q +V S + R + ++ V P+I+ E +I EP Y PI
Sbjct: 527 FNFLLARGQQIKVISQLFRKALQHDLVV--PNIRVNGTDEQYEGATVI-EPIKGYYDTPI 583
Query: 676 IVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKL--T 733
LDF SLYPS++ A+N C++T L D N + L KL+Q + +
Sbjct: 584 ATLDFSSLYPSIMQAHNLCYTTLL-----------------DSNTA--ELLKLKQDVDYS 624
Query: 734 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIA 793
++P+G FV +R G+LP +L ++L+ R K +K+ +++ + VL RQL LK+ A
Sbjct: 625 VTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKK-ETDPFKKAVLDGRQLALKVSA 683
Query: 794 NVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVN------NTSKWQCRVVYGDT 847
N YG+T A +GR+PC+ + SV S GR+ ++K + V N V+YGDT
Sbjct: 684 NSVYGFTGAT-NGRLPCLAISSSVTSYGRQMIEKTKDVVEKRYRIENGYSHDAVVIYGDT 742
Query: 848 DSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYET 907
DS+ V KT EA ++G+E A KL+FEKVY P +L +KKRY G +
Sbjct: 743 DSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEFEKVYFPYLLISKKRYAGLFWTR 802
Query: 908 ADQ-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGR 966
D DK ++KGIETVRRD CP VS ++ +L + +D+ + + +K S ++ +
Sbjct: 803 TDTYDK--MDSKGIETVRRDNCPLVSYVIDTALRKMLIDQDVEGAQLFTKKVISDLLQNK 860
Query: 967 ISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLP 1026
I + + K + Y A + + LA + D + P + +RV YVI+ GA G
Sbjct: 861 IDMSQLVITKAL-SKTDY--AAKMAHVELAERMRKRDAGSAPAIGDRVAYVIIKGAQGDQ 917
Query: 1027 LIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCF 1063
+ P +L+++ + ++++YY+ + PL R F
Sbjct: 918 FYMRSEDPIYVLENN-IPIDAKYYLENQLSKPLLRIF 953
Score = 619 (223.0 bits), Expect = 3.8e-56, Sum P(2) = 3.8e-56
Identities = 185/607 (30%), Positives = 301/607 (49%)
Query: 594 RLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAH 653
RL+++L +EMAR+ G+ F +L+RG Q +V S + R + ++ V P+I+
Sbjct: 505 RLMDKLMCFVNYTEMARVTGVPFNFLLARGQQIKVISQLFRKALQHDLVV--PNIRVNGT 562
Query: 654 MRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPF 713
E +I EP Y PI LDF SLYPS++ A+N C++T L
Sbjct: 563 DEQYEGATVI-EPIKGYYDTPIATLDFSSLYPSIMQAHNLCYTTLL-------------- 607
Query: 714 GCIDLNVSIRSLKKLQQKL--TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 771
D N + L KL+Q + +++P+G FV +R G+LP +L ++L+ R K +K+
Sbjct: 608 ---DSNTA--ELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKK 662
Query: 772 YKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIET 831
+++ + VL RQL LK+ AN YG+T A +GR+PC+ + SV S GR+ ++K +
Sbjct: 663 -ETDPFKKAVLDGRQLALKVSANSVYGFTGAT-NGRLPCLAISSSVTSYGRQMIEKTKDV 720
Query: 832 VN------NTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKF 885
V N V+YGDTDS+ V KT EA ++G+E A KL+F
Sbjct: 721 VEKRYRIENGYSHDAVVIYGDTDSVMVKFGVKTLPEAMKLGEEAANYVSDQFPNPIKLEF 780
Query: 886 EKVYQPCILQTKKRYVGYMYETADQ-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFE 944
EKVY P +L +KKRY G + D DK ++KGIETVRRD CP VS ++ +L +
Sbjct: 781 EKVYFPYLLISKKRYAGLFWTRTDTYDK--MDSKGIETVRRDNCPLVSYVIDTALRKMLI 838
Query: 945 TKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDP 1004
+D+ + + +K S ++ +I + + K + Y A + + LA + D
Sbjct: 839 DQDVEGAQLFTKKVISDLLQNKIDMSQLVITKAL-SKTDY--AAKMAHVELAERMRKRDA 895
Query: 1005 RAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL 1064
+ P + +RV YVI+ GA G + P +L+++ + ++++YY+ + PL R F
Sbjct: 896 GSAPAIGDRVAYVIIKGAQGDQFYMRSEDPIYVLENN-IPIDAKYYLENQLSKPLLRIFE 954
Query: 1065 -LLGTPVLPW-YKNLPRKLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNK-GV 1120
+LG + + R + + PSV I ++ V C+ C + K +
Sbjct: 955 PILGEKASSLLHGDHTRTISMAAPSV-------GGIMKFAVKVETCLGCKAPIKKGKTAL 1007
Query: 1121 CDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQ 1178
C+ CLN++ L ++ + ++ C C G S D C S DCP+ Y +
Sbjct: 1008 CENCLNRSAELYQRQVAQVNDLEVRFARLWTQCQRCQG-SMHQDVICTSRDCPIFYMRIA 1066
Query: 1179 ITRDLDQ 1185
+ L Q
Sbjct: 1067 EHKKLQQ 1073
Score = 40 (19.1 bits), Expect = 6.5e-62, Sum P(2) = 6.5e-62
Identities = 14/48 (29%), Positives = 26/48 (54%)
Query: 34 MEGRAENEHMISSSESYLFTQ-NKS-YDSPTIVAKQTLLPLSGELEKQ 79
M R+ NE ++ + E+Y F + N S + T V ++ L +G +K+
Sbjct: 1 MTDRSSNEGVVLNKENYPFPRRNGSIHGEITDVKRRRLSERNGYGDKK 48
>GENEDB_PFALCIPARUM|PF10_0362 [details] [associations]
symbol:PF10_0362 "DNA polymerase zeta catalytic
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0016035
"zeta DNA polymerase complex" evidence=ISS] InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR008973 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562
SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 394 (143.8 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 92/244 (37%), Positives = 139/244 (56%)
Query: 705 LGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLM 764
LGV + P ++ I++LK + + I+ + +V K R GI P L++IL TR+M
Sbjct: 1304 LGVMKNVP----SISSRIKNLKS--EDIIITSNNTIYVKKHKRKGICPLFLEDILKTRIM 1357
Query: 765 VKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRET 824
+K+ M Y+ + + L+ R LKLI NV GY ANFSGRMPCV++ +S++S GR
Sbjct: 1358 LKRCMGMYEER--VNKKLNERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNF 1415
Query: 825 LQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTK-QEAFEIGKEIAXXXXXXXXXXXKL 883
L IE + K+ +++YGDTDS+F+L Q +F++ EI L
Sbjct: 1416 LLFIIEYIKENYKF-VKILYGDTDSLFLLNETTDDIQSSFKLAYEILNSINNILPLPMYL 1474
Query: 884 KFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943
FEK+Y P +L TKKRY G+ ++ +QD PI + KG+E++R D C V IL + +LF
Sbjct: 1475 NFEKIYCPSLLLTKKRYFGFSFKNENQDNPILDLKGVESIRSDQCILVKNILIQIYFILF 1534
Query: 944 ETKD 947
K+
Sbjct: 1535 YFKN 1538
Score = 266 (98.7 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 51/132 (38%), Positives = 84/132 (63%)
Query: 571 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 630
EH Y+ +T++HYL +V I+ + +++ F+ R + + +++RGSQ+ +ES
Sbjct: 998 EHIYFPYRHITIKHYLRKVYFILLIYDKICFLKRKMNFCKYIHVDLLSLINRGSQYIIES 1057
Query: 631 IMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIA 690
+L++S N+V SPS K+ R PLIL+P+S + P++V DFQSLYPS++IA
Sbjct: 1058 FLLKMSIKYNYVLYSPSNKEIFDQRPILHTPLILQPKSSINFFPLLVFDFQSLYPSILIA 1117
Query: 691 YNYCFSTCLGRV 702
+N C+STCLG +
Sbjct: 1118 FNICYSTCLGTI 1129
Score = 96 (38.9 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 30/130 (23%), Positives = 58/130 (44%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+ + V NE+EL I + + P ++ YE + + Y+ +R L L++ I
Sbjct: 846 VNICIVENERELIQKLINKILFYSPLSIVSYENDKYNINYINQR--CLALDIGNFYKMIC 903
Query: 505 EVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWK 564
++ + D + G I+ +L++L N + +FEN+ H L+ IP +
Sbjct: 904 KLNDQKKFLDLHNAYSRNIKGIIIESLYKLS----NTYNTSFENLCKHYLNINIPSINKY 959
Query: 565 LLTCWWEHRT 574
L W+ + T
Sbjct: 960 TLYYWYNYNT 969
Score = 66 (28.3 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 21/101 (20%), Positives = 46/101 (45%)
Query: 942 LFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKE-----YRGQA-GYKPGACVPALSL 995
LF + LS +++ + + F+KI +IS + ++ Y+G+ G + +P ++
Sbjct: 1769 LFYSHLLSHIRQTLSEYFNKIYDNQISCDNFIIYRKVKLGTYKGEMQGIRRKVSLPPQAI 1828
Query: 996 ARQWVLTD-PRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ ++ D P + E+VPY+ + V P+
Sbjct: 1829 VARKIMRDFPNSIITYKEKVPYIFTKKLKDDKIYSSVSHPH 1869
Score = 63 (27.2 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 1045 LNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKK-STISQYFA 1103
+N +YYI +IIPPL+R LL L NL ++ N K K S+Y+
Sbjct: 2040 INYDYYIQNLIIPPLKRMLDLLPFCSL----NLD-EIFYRTKRKFNWNKAKLEMFSKYYK 2094
Query: 1104 SVNCVCCNQMTQNNKGV 1120
+++ NKG+
Sbjct: 2095 NMDNKLLKNNNVTNKGI 2111
Score = 56 (24.8 bits), Expect = 3.2e-35, Sum P(5) = 3.2e-35
Identities = 21/93 (22%), Positives = 42/93 (45%)
Query: 99 KLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEH 158
K+K S +V +++IN D+ N + +E Y ++ IT K V+ + L+ +
Sbjct: 972 KIKANG-SSTVVNKDIINNDLWNDMDEEHIYFPYRHITIKHYLRK-VYF----ILLIYDK 1025
Query: 159 RCLFSGLSEWRQRVCLEVTGDATRNVNDIMESF 191
C + + + +++ R I+ESF
Sbjct: 1026 ICFLKRKMNFCKYIHVDLLSLINRGSQYIIESF 1058
Score = 49 (22.3 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 1136 YYKIQAWQRSQDQVNKVCTTCVGRSTSN-DC-ISLDCPVLYRKTQITRDL 1183
Y +I Q ++NK+C C C S+ C + +++ + ++
Sbjct: 2180 YVEINKSQNMLKKLNKICLMCANSEMEALACNYSVHCKIFFKRINLQENI 2229
Score = 41 (19.5 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 20/92 (21%), Positives = 39/92 (42%)
Query: 366 QMGLDNLNE-VTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDR 424
Q+ DN+ + + N + + EI D D++KA+FY + E+R
Sbjct: 642 QIKSDNMKKKINIKYGNIFFLEILTEIK--DENCYSSDYNQDKIKAVFYIV-----REER 694
Query: 425 KVGIILIGQESELPEVRTKPI-QMHFVSNEKE 455
+ + + + + TKP + ++ NE E
Sbjct: 695 LMNLYE-DYNNCMGIIATKPFPNISYLFNESE 725
Score = 39 (18.8 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 700 GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 730
G E L V++ +++N S LKKL +
Sbjct: 2165 GENEELKVTNKIMNSYVEINKSQNMLKKLNK 2195
>UNIPROTKB|Q8IJ38 [details] [associations]
symbol:PF10_0362 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR008973 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562 SUPFAM:SSF53098
EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 394 (143.8 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 92/244 (37%), Positives = 139/244 (56%)
Query: 705 LGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLM 764
LGV + P ++ I++LK + + I+ + +V K R GI P L++IL TR+M
Sbjct: 1304 LGVMKNVP----SISSRIKNLKS--EDIIITSNNTIYVKKHKRKGICPLFLEDILKTRIM 1357
Query: 765 VKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRET 824
+K+ M Y+ + + L+ R LKLI NV GY ANFSGRMPCV++ +S++S GR
Sbjct: 1358 LKRCMGMYEER--VNKKLNERMGKLKLILNVATGYIGANFSGRMPCVDISESIISIGRNF 1415
Query: 825 LQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTK-QEAFEIGKEIAXXXXXXXXXXXKL 883
L IE + K+ +++YGDTDS+F+L Q +F++ EI L
Sbjct: 1416 LLFIIEYIKENYKF-VKILYGDTDSLFLLNETTDDIQSSFKLAYEILNSINNILPLPMYL 1474
Query: 884 KFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLF 943
FEK+Y P +L TKKRY G+ ++ +QD PI + KG+E++R D C V IL + +LF
Sbjct: 1475 NFEKIYCPSLLLTKKRYFGFSFKNENQDNPILDLKGVESIRSDQCILVKNILIQIYFILF 1534
Query: 944 ETKD 947
K+
Sbjct: 1535 YFKN 1538
Score = 266 (98.7 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 51/132 (38%), Positives = 84/132 (63%)
Query: 571 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 630
EH Y+ +T++HYL +V I+ + +++ F+ R + + +++RGSQ+ +ES
Sbjct: 998 EHIYFPYRHITIKHYLRKVYFILLIYDKICFLKRKMNFCKYIHVDLLSLINRGSQYIIES 1057
Query: 631 IMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIA 690
+L++S N+V SPS K+ R PLIL+P+S + P++V DFQSLYPS++IA
Sbjct: 1058 FLLKMSIKYNYVLYSPSNKEIFDQRPILHTPLILQPKSSINFFPLLVFDFQSLYPSILIA 1117
Query: 691 YNYCFSTCLGRV 702
+N C+STCLG +
Sbjct: 1118 FNICYSTCLGTI 1129
Score = 96 (38.9 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 30/130 (23%), Positives = 58/130 (44%)
Query: 445 IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 504
+ + V NE+EL I + + P ++ YE + + Y+ +R L L++ I
Sbjct: 846 VNICIVENERELIQKLINKILFYSPLSIVSYENDKYNINYINQR--CLALDIGNFYKMIC 903
Query: 505 EVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWK 564
++ + D + G I+ +L++L N + +FEN+ H L+ IP +
Sbjct: 904 KLNDQKKFLDLHNAYSRNIKGIIIESLYKLS----NTYNTSFENLCKHYLNINIPSINKY 959
Query: 565 LLTCWWEHRT 574
L W+ + T
Sbjct: 960 TLYYWYNYNT 969
Score = 66 (28.3 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 21/101 (20%), Positives = 46/101 (45%)
Query: 942 LFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKE-----YRGQA-GYKPGACVPALSL 995
LF + LS +++ + + F+KI +IS + ++ Y+G+ G + +P ++
Sbjct: 1769 LFYSHLLSHIRQTLSEYFNKIYDNQISCDNFIIYRKVKLGTYKGEMQGIRRKVSLPPQAI 1828
Query: 996 ARQWVLTD-PRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ ++ D P + E+VPY+ + V P+
Sbjct: 1829 VARKIMRDFPNSIITYKEKVPYIFTKKLKDDKIYSSVSHPH 1869
Score = 63 (27.2 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 23/77 (29%), Positives = 35/77 (45%)
Query: 1045 LNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKK-STISQYFA 1103
+N +YYI +IIPPL+R LL L NL ++ N K K S+Y+
Sbjct: 2040 INYDYYIQNLIIPPLKRMLDLLPFCSL----NLD-EIFYRTKRKFNWNKAKLEMFSKYYK 2094
Query: 1104 SVNCVCCNQMTQNNKGV 1120
+++ NKG+
Sbjct: 2095 NMDNKLLKNNNVTNKGI 2111
Score = 56 (24.8 bits), Expect = 3.2e-35, Sum P(5) = 3.2e-35
Identities = 21/93 (22%), Positives = 42/93 (45%)
Query: 99 KLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITNKFVHLEAAPVALLEEH 158
K+K S +V +++IN D+ N + +E Y ++ IT K V+ + L+ +
Sbjct: 972 KIKANG-SSTVVNKDIINNDLWNDMDEEHIYFPYRHITIKHYLRK-VYF----ILLIYDK 1025
Query: 159 RCLFSGLSEWRQRVCLEVTGDATRNVNDIMESF 191
C + + + +++ R I+ESF
Sbjct: 1026 ICFLKRKMNFCKYIHVDLLSLINRGSQYIIESF 1058
Score = 49 (22.3 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 10/50 (20%), Positives = 22/50 (44%)
Query: 1136 YYKIQAWQRSQDQVNKVCTTCVGRSTSN-DC-ISLDCPVLYRKTQITRDL 1183
Y +I Q ++NK+C C C S+ C + +++ + ++
Sbjct: 2180 YVEINKSQNMLKKLNKICLMCANSEMEALACNYSVHCKIFFKRINLQENI 2229
Score = 41 (19.5 bits), Expect = 9.3e-62, Sum P(7) = 9.3e-62
Identities = 20/92 (21%), Positives = 39/92 (42%)
Query: 366 QMGLDNLNE-VTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDR 424
Q+ DN+ + + N + + EI D D++KA+FY + E+R
Sbjct: 642 QIKSDNMKKKINIKYGNIFFLEILTEIK--DENCYSSDYNQDKIKAVFYIV-----REER 694
Query: 425 KVGIILIGQESELPEVRTKPI-QMHFVSNEKE 455
+ + + + + TKP + ++ NE E
Sbjct: 695 LMNLYE-DYNNCMGIIATKPFPNISYLFNESE 725
Score = 39 (18.8 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 700 GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 730
G E L V++ +++N S LKKL +
Sbjct: 2165 GENEELKVTNKIMNSYVEINKSQNMLKKLNK 2195
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 651 (234.2 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 214/765 (27%), Positives = 355/765 (46%)
Query: 447 MHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLN-QELSRI-- 503
M F ++E E+ + + + + DPDI+IGY I YL ER L + Q R+
Sbjct: 351 MSF-NDEAEMLLRWRDLLVESDPDIIIGYNILNFDLPYLYERADALKIGKKFQVWGRVRG 409
Query: 504 TEVEKRNSS-RDEVKNTQ----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-R 557
+ R+ + T + + GR+ +L ++ + L SY+ ++ H L E +
Sbjct: 410 SHTRMRDGQFSSKAYGTHEYKDITIEGRVQFDLLTAIQRDHKLSSYSLNSVSAHFLGEQK 469
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-RLIEQLDFIGRTSEMARLFGIQF 616
+H + + + V Y ++ + RL+++L + EMAR+ G+
Sbjct: 470 EDVHH-SAIADLQAGNEETRRRLAV--YCLKDAYLPQRLLDKLMYTYNYIEMARVTGVPL 526
Query: 617 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESL----PLILEPESRLYT 672
+L+RG +V S +LR + FV P+IK + + + + +L+P+ Y
Sbjct: 527 SYLLTRGQSIKVFSQLLRKAAAKGFVI--PNIKVQGPVAGADGVGYEGATVLDPKIGFYD 584
Query: 673 DPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKL 732
P+ LDF SLYPS+++A+N C++T L + + LN+ + + Q
Sbjct: 585 RPVATLDFASLYPSIMMAHNLCYTTLLTKDQ--------------LNI-VPPEDREQ--- 626
Query: 733 TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLI 792
SPSG FV S + G+LP++L+E+L R K +K K + + VL RQL LK+
Sbjct: 627 --SPSGDWFVRNSRQRGLLPEILEELLAARKRAKNDLKAEK-DPFKRAVLDGRQLALKVS 683
Query: 793 ANVTYGYTAANFSGRMPCVEVGDSVVSKGRE---TLQKAIE---TVNNTSKWQCRVVYGD 846
AN YG+T A G+MPC+ + S S GRE T ++ ++ T N + C V+YGD
Sbjct: 684 ANSVYGFTGATV-GKMPCLAISASTTSYGREMIMTTRQLVQEHYTRANGYETDCEVIYGD 742
Query: 847 TDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYE 906
TDS+ V A E+G+E A KL+FEKVY P +L KKRY G ++
Sbjct: 743 TDSVMVNFKVADVARAMELGREAAAVVSKAFPPPVKLEFEKVYYPYLLMNKKRYAGLLWT 802
Query: 907 TAD-QDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISG 965
+ DK ++KGIETVRRD C V ++ L + KD+ YV+ + ++
Sbjct: 803 RPETHDK--MDSKGIETVRRDNCLLVRNVVTTCLERILIGKDVQGAVGYVKGVIADLLMN 860
Query: 966 RISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGL 1025
+I + + +K A G + + LA++ DP P V +RVPYVI+ A G
Sbjct: 861 KIDLSLLVISKGLTQDADEYEGK-IAHVELAKKMRKRDPATAPAVGDRVPYVIIKAAKGA 919
Query: 1026 PLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYL 1085
+ + P L+ S L ++ ++Y+ + PL R F PV+ K L H
Sbjct: 920 KAWEKAEDPIYALEHS-LPIDVQHYLEHHLSQPLLRIF----EPVMKNPKELLCGDHTRC 974
Query: 1086 PSVLNERKKKSTISQYF-ASVNCVCCNQMTQNN--KGVCDACLNQTQLLGTCLYYKIQAW 1142
+V I ++ +++C+ C + +C C Q + + +
Sbjct: 975 IAVSTPSTAAGGIMRFAKVTMSCLACKAPLPSGCKDSLCGHCKPQEAEIYSRTLGTVSEL 1034
Query: 1143 QRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQ 1185
+ + C C G S D C S DCP+ YR+ ++ +DL++
Sbjct: 1035 EAQYGALWTACQRCQG-SLHMDVLCTSRDCPIFYRRKKVQKDLNE 1078
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 650 (233.9 bits), Expect = 7.6e-60, Sum P(2) = 7.6e-60
Identities = 217/827 (26%), Positives = 370/827 (44%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L VL+ +I R + P+P D V I + E++ + + Q
Sbjct: 314 LRVLSFDIECAGRKGVFPEPEVDPVIQIASMVQR-QGEKEPFIRTVFTLQSC----ASIV 368
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
Q+ + EK + + E +R DPDI+ GY I+ YLL R L +N+ L R+
Sbjct: 369 GSQILCFTQEKLMLQSWAEFMRTVDPDIITGYNIQNFDLPYLLNRAATLKVNMFPYLGRV 428
Query: 504 ---TEVEKRNSSRDEV----KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
V K +S + + +N + M GR+ +L ++L + L+SYT + +H L E
Sbjct: 429 WGCKSVLKDSSFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNAVSFHFLQE 488
Query: 557 RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQ 615
+ ++T + + V Y ++ + +RL+++L + EMAR+ G+
Sbjct: 489 QKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAYLPLRLLQKLMCVINYMEMARVTGVP 546
Query: 616 FYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPI 675
+LSRG Q +V S +LR + + V P +K + ++EPE Y+ PI
Sbjct: 547 LTYLLSRGQQIKVVSQLLRQAMKQDLVM--PVVKTEGGEDYTGAT--VIEPEKGYYSVPI 602
Query: 676 IVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQQKL 732
LDF SLYPS+++A+N C++T L ++E LG+ D F +K
Sbjct: 603 ATLDFSSLYPSIMMAHNLCYTTLLQKSQIEKLGLGPDDF-------------IK------ 643
Query: 733 TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE----YKSNAALQRVLHARQLG 788
+P+G FV S+R G+LP++L+ +L R K +K+ +K R L A ++
Sbjct: 644 --TPTGDLFVKSSVRKGLLPEILENLLSARKRAKAELKKETDPFKKQVLDGRQL-ALKIS 700
Query: 789 LKLIANVTYGYTAAN--FSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGD 846
+ T G ++ + ++ ++ T++N + +V+YGD
Sbjct: 701 ANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEQTKQLVESRY-TLDNGYQADAKVIYGD 759
Query: 847 TDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYE 906
TDS+ V T QEA GKE A KL+FEKVY P +L KKRY G +
Sbjct: 760 TDSVMVKLGVATVQEAMNQGKEAAEWVSSHFVPPIKLEFEKVYYPYLLINKKRYAGLYFS 819
Query: 907 TADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGR 966
++ + + KGIETVRRD CP V+ ++ L + +D + ++ S ++ R
Sbjct: 820 SSAEHHDKMDCKGIETVRRDNCPLVANLINTCLQNILIDRDPDGAVTHAKEVISDLLCNR 879
Query: 967 ISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLP 1026
I + + KE A G + LA + D + P + +RVPYVI+ A G+
Sbjct: 880 IDISQLVITKELTRTAQEYAGKQAH-VELAERMRKRDAGSAPNLGDRVPYVIIKAAKGVA 938
Query: 1027 LIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLPWYKNLPRKLHVYL 1085
+ P +L+++ + ++++YY+ + + PL R F +LG L + H
Sbjct: 939 AYMKSEDPIYVLENN-IPIDTQYYLEQQLSKPLLRIFEPILGESKAE--SVLLKGDHTRC 995
Query: 1086 PSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRS 1145
+VL R S C+ C + + + VCD C + L + +
Sbjct: 996 KTVLTSRVGGLMAFAQKRST-CIGCRAVLKTDVAVCDFCKKRESELYQKEIAHLSTLEEK 1054
Query: 1146 QDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQITRDLDQLSYVLS 1191
++ C C G + C S DCP+ Y + ++ +DLD ++S
Sbjct: 1055 FSRLWTQCQRCQGSLHEDVLCTSRDCPIFYMRKKVQKDLDDQEKLVS 1101
Score = 42 (19.8 bits), Expect = 7.6e-60, Sum P(2) = 7.6e-60
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 372 LNEVTSHVENYYLTVLAVEI 391
L ++ S+ +N +TVLAV+I
Sbjct: 166 LKDMRSNKDNIAVTVLAVDI 185
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 623 (224.4 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 214/785 (27%), Positives = 366/785 (46%)
Query: 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN------LNQELSRITEVE--KRNS 511
F++NV DPDI +GY I + Y+LERG L +N + + + IT ++ K S
Sbjct: 375 FLQNV---DPDIFLGYNITNFDFPYILERGKQLKINNGKYGFMGRIKNTITRIKDGKYLS 431
Query: 512 SRDEVKNT-QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPLHSWKLLTCW 569
+++T ++ GRI +++ + E L SY+ ++ YH L+E + +H ++ +
Sbjct: 432 KAMGMRDTKEMNFEGRIQLDMMMHMHRETKLSSYSLNSVSYHFLNEQKEDVHHTQI-SGL 490
Query: 570 WEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV 628
+ K + V Y ++ + ++L+++L I +EMAR+ G+ + +RG Q +V
Sbjct: 491 QKGDAETRKRLAV--YCLKDAQLPLKLMQKLMCIYNYTEMARVTGVPINFLFTRGQQIKV 548
Query: 629 ESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVI 688
S + R ++L N P+ + + E +L+P+ Y PI LDF SLYPS++
Sbjct: 549 ASQLYRRTKLLNLYI--PTERSQGQGDKFEGA-FVLQPKKGFYDKPIATLDFASLYPSIM 605
Query: 689 IAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRC 748
+A+N C+ST + + NV++ S+ K T++P G F +R
Sbjct: 606 MAHNLCYSTLISK-----------------NVAM-SMNK--DDYTLTPHGDYFAKPHVRQ 645
Query: 749 GILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSG-- 806
GILP +L+++L R K + + +++ + VL RQL LK+ AN YG+T A
Sbjct: 646 GILPDILKDLLAARKKAKNELAK-ETDPLRKAVLDGRQLALKISANSVYGFTGAQVGQLP 704
Query: 807 ----RMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
G ++ R+ + N + + V+YGDTDS+ V + +EA
Sbjct: 705 CLEISSSVTSFGRQMIEATRDFVLNHYNKANGYN-YDSDVIYGDTDSVMVKFGCDSIEEA 763
Query: 863 FEIGKEIAXXXXXXXXXX-XKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIE 921
+ GKE A KL+FEKVY P +L +KKRY G Y D+ I + KG+E
Sbjct: 764 MKYGKEAAEMISKKLFINPIKLEFEKVYYPYLLISKKRYAGCFYTKPDKYDKI-DTKGME 822
Query: 922 TVRRDGCPAVSKILKKSL-CLLFETKDLSVVK--EYVEKQFSKIISGRISVQDMTFAKEY 978
VRRD C + +++ L +L E K V + ++++ S + ++ + + K
Sbjct: 823 NVRRDNCQFIREMMNTCLRYILVEHKQDGVQRSIQFIKGCISDLYQNKVDISKLVITKSL 882
Query: 979 --------RGQAGYKPG------ACVPA----------LSLARQWVLTDPRAEPRVSERV 1014
G+ K G A P+ + LA++ DP + P + +R+
Sbjct: 883 TKKSADDDEGEEDGKKGSSHNNKAKEPSANQYKGKQAHVELAKKMAKRDPGSAPCIGDRI 942
Query: 1015 PYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWY 1074
PYVIV+GA + V+ P +L++ + L+ +YYI + I P+ R + + V +
Sbjct: 943 PYVIVAGAKSAKNYEKVEDPIYVLEND-IPLDYDYYIEKQIKNPITRIYSHIIDNVDSLF 1001
Query: 1075 KNLPRKLHVYLPSVLNERKKKSTISQYFASVNCVCCNQMTQNNKGVCDACLNQT-QLLGT 1133
K + Y P V + I + + + C C + VCD CL + Q L
Sbjct: 1002 YGEHTK-NRYQPKVNSGHGLGKFIVKKESCLQCKC---QVNGKQPVCDNCLEKNPQRLID 1057
Query: 1134 CLYYKIQAWQRSQDQVNKV---CTTCVGRSTSND-CISLDCPVLYRKTQITRDLDQLSYV 1189
KI Q + Q N++ C C G C + DCP+ Y++T++ DL + +
Sbjct: 1058 IYTEKIIQHQSIEYQYNQLWTQCQRCQGSLHEQVICSNRDCPIYYKRTKLQTDLSRSQQL 1117
Query: 1190 LSLCD 1194
LS D
Sbjct: 1118 LSRFD 1122
Score = 42 (19.8 bits), Expect = 1.1e-56, Sum P(2) = 1.1e-56
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 181 TRNVNDIMESFQHIFPKSNFIK--PIAKP--PTSKSVTRWLERKEAFKRNAGTRSSV 233
T++ + ++ S + + P F++ P +P T KS+ L ++ F+RN T + +
Sbjct: 119 TKDQHSVLVSIRGVVPYL-FVRLPPQIQPNAQTLKSIMDDLNKQGKFQRNVKTTNFI 174
>UNIPROTKB|Q8X0N7 [details] [associations]
symbol:B10H4.020 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006287 "base-excision
repair, gap-filling" evidence=IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IBA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB HSSP:Q56366
EMBL:AL670010 ProteinModelPortal:Q8X0N7 STRING:Q8X0N7
Uniprot:Q8X0N7
Length = 1104
Score = 588 (212.0 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 218/835 (26%), Positives = 381/835 (45%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +L+ +I R + P+P +D V I + ++ + + S P V T+
Sbjct: 306 LRILSFDIECAGRKGIFPEPQHDSVIQIANIVTKYGEKKPFVRNVFCLDTTS--PIVATQ 363
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR- 502
+ E+++ + + Q DPDI+IGY I + YLL+R L + SR
Sbjct: 364 ILSF---DREEDMLREWRNFLEQVDPDIIIGYNIANFDFPYLLDRAKHLKVKDFDFWSRT 420
Query: 503 -ITEVEKR-NSSRDEVKNTQLQMP---GRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 557
+ V K N S ++ N + GR+ +++ +L++ + L+SYT ++ H L E+
Sbjct: 421 RVRSVAKETNFSSKQMGNRDTKATNTNGRLQLDMLQLVQRDYQLRSYTLNSVCSHFLGEQ 480
Query: 558 IP--LHSW--KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 613
HS +L E R L + + YL + RL+++L + +EMAR+ G
Sbjct: 481 KEDVHHSMITELFEGTPESRRRLALYCLKDAYLPQ-----RLMDKLSCLENYTEMARVTG 535
Query: 614 IQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTD 673
+ F +L+RG Q + S + R + V P+++ + E +I EP Y
Sbjct: 536 VPFNFLLARGQQVKFLSQLFRKALEQKLVI--PNLRPESSEEQYEGATVI-EPTRGYYDV 592
Query: 674 PIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLT 733
PI LDF SLYPS++ A+N C++T + + + + LKK +
Sbjct: 593 PIATLDFASLYPSIMQAHNLCYTTLIKKRD----------------IERWDLKK-DEDYI 635
Query: 734 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIA 793
++P+G FV R G+L ++L+E+L R K+ + K + + VL+ RQL LK+ A
Sbjct: 636 VTPNGDMFVTTKQRKGLLAQILEELLSARKQAKRELAVEK-DPFKKAVLNGRQLALKVSA 694
Query: 794 NVTYGYTAAN------FSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDT 847
N YG T A G ++ + ++ +++ T+ N +V+YGDT
Sbjct: 695 NSVYGLTGATNGKLPCLEIASSVTSFGRQMIERTKKEVEERY-TIANGYSHDAQVIYGDT 753
Query: 848 DSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYET 907
DS+ V K EA ++G++ + KL+FEKVY P +L KKRY G +Y T
Sbjct: 754 DSVMVKFGTKDLAEAMKLGQDASEYVSGKFIKPIKLEFEKVYFPYLLINKKRYAG-LYWT 812
Query: 908 ADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRI 967
+ + KGIETVRRD C V +++K L ++ +D+ + YV+ + ++ +I
Sbjct: 813 KPEKYDKMDTKGIETVRRDNCLLVQTVIEKVLRMILIDQDVPGAQAYVKDTIADLLQNKI 872
Query: 968 SVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPL 1027
+ + K + Y A + LA++ D + P + +RV YV+V GA G
Sbjct: 873 DMSKLVITKALTKE-NYD--AKQAHVELAQRMKKRDAGSAPGLGDRVAYVMVKGATGSKN 929
Query: 1028 IKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLP--WYKNLPRKLHVY 1084
+ + P +L+ + + ++++YY+ + PL R F +LG + + R + V
Sbjct: 930 FERSEDPIYVLEHN-VPIDTKYYLDNQLAKPLGRIFEPILGETKAKSLLHGDHTRVVSVA 988
Query: 1085 LPSV--LNERKKKSTISQYFASVNCVCCNQMTQNNKG-VC-DACLNQTQLLGTCLYYKIQ 1140
P+V L + KK+ + C + ++G VC D +L L ++
Sbjct: 989 APTVGGLMKFAKKTQ-----TCMGCKKPLTGKEESQGAVCADDAPRVGELYKKTLD-RVS 1042
Query: 1141 AWQRSQDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQITRDLDQLSYVLSLCD 1194
+ ++ C C G C S DCP+ Y + + +DL+ + L D
Sbjct: 1043 DLEVRFGRLWTQCQRCQGSMHCEVICSSKDCPIFYMRMKAKKDLEDANKELQRFD 1097
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 576 (207.8 bits), Expect = 2.3e-52, P = 2.3e-52
Identities = 162/541 (29%), Positives = 259/541 (47%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG+ F
Sbjct: 584 VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPD-EF------- 635
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
+K +P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 636 ----IK--------TPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ-ETDPLRRQ 682
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IE---TVNN 834
VL RQL LK+ AN YG+T A G++PC+E+ SV GR+ ++K +E TV N
Sbjct: 683 VLDGRQLALKVSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 741
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 742 GYDANAKVVYGDTDSVMCRFGVSSVAEAMSLGREAANWVSSHFPSPIRLEFEKVYFPYLL 801
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL + +D +
Sbjct: 802 ISKKRYAGLLFSSRSDAHDKMDCKGLEAVRRDNCPLVANLVTSSLRRILVDRDPDGAVAH 861
Query: 955 VEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
+ S ++ RI + + KE R A Y + LA + DP + P + +R
Sbjct: 862 AKDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 919
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLP 1072
VPYVI+ A G+ + P +L+ S L ++++YY+ + + PL R F +LG
Sbjct: 920 VPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILGEGRAE 978
Query: 1073 WYKNLPRKLHVYLPSVLNERKKKSTISQYFASVNC-VCCNQMTQNNKGVCDACLNQTQLL 1131
L R H +VL K + + NC + C + + VC C + L
Sbjct: 979 --SVLLRGDHTRCKTVLTS--KVGGLLAFTKRRNCCIGCRSVIDHQGAVCKFCQPRESEL 1034
Query: 1132 GTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSYV 1189
+ A + ++ C C G S D C S DCP+ Y + ++ +DL+ +
Sbjct: 1035 YQKEVSHLNALEERFSRLWTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQERL 1093
Query: 1190 L 1190
L
Sbjct: 1094 L 1094
Score = 288 (106.4 bits), Expect = 3.6e-21, P = 3.6e-21
Identities = 107/400 (26%), Positives = 189/400 (47%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 308 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 364
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
K +Q + E++L + + + DPD++ GY I+ YL+ R L ++ L R
Sbjct: 365 K-VQSY--EREEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGR 421
Query: 503 ITEVEK--RNSSRD--EV--KNTQ-LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
+T + R+SS +V ++++ + M GR+ +++ ++L E L+SYT + +H L
Sbjct: 422 VTGLRSNIRDSSFQSRQVGRRDSKVISMVGRVQMDMLQVLLREHKLRSYTLNAVSFHFLG 481
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGI 614
E+ ++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 482 EQKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEMARVTGV 539
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+L+RG Q +V S +LR + + P +K + ++EP Y P
Sbjct: 540 PLGYLLTRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGSEDYTGAT--VIEPLKGYYDVP 595
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQQK 731
I LDF SLYPS+++A+N C++T L G + LG+ D F +K
Sbjct: 596 IATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF-------------IK----- 637
Query: 732 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 771
+P+G FV S+R G+LP++L+ +L R K + +
Sbjct: 638 ---TPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ 674
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 575 (207.5 bits), Expect = 3.0e-52, P = 3.0e-52
Identities = 164/542 (30%), Positives = 264/542 (48%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG++
Sbjct: 586 VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKD---------- 635
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
+ +K +P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 636 --QFIK--------TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAK-ETDPLRRQ 684
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IE---TVNN 834
VL RQL LK+ AN YG+T A G++PC+E+ SV GR+ ++K +E TV N
Sbjct: 685 VLDGRQLALKVSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 743
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 744 GYSANAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLL 803
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL L +D + +
Sbjct: 804 ISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPAGAVAH 863
Query: 955 VEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
+ S ++ RI + + KE R A Y + LA + DP + P + +R
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 921
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL-LLGTPVLP 1072
VPYVI+ A G+ + P +L+ S L ++++YY+ + + PL R F +LG
Sbjct: 922 VPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIFEPILGEGRAE 980
Query: 1073 WYKNLPRKLHVYLPSVLNERKKKSTISQYFASVN--CVCCNQMTQNNKGVCDACLNQTQL 1130
L R H +VL K ++ FA + C+ C + + VC C +
Sbjct: 981 AV--LLRGDHTRCKTVLTG-KVGGLLA--FAKRHSCCIGCRTVLNHQGAVCKFCQPRESE 1035
Query: 1131 LGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRDLDQLSY 1188
L + A +R ++ C C G S D C S DCP+ Y + ++ +DL+
Sbjct: 1036 LYQKEVSHLNALERRFSRLCTQCQRCQG-SLHEDVICTSRDCPIFYMRKKVRKDLEDQEQ 1094
Query: 1189 VL 1190
+L
Sbjct: 1095 LL 1096
Score = 296 (109.3 bits), Expect = 4.9e-22, P = 4.9e-22
Identities = 110/401 (27%), Positives = 187/401 (46%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 366
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
K +Q + E+EL + +R DPD++ GY I+ YL+ R L ++ L R
Sbjct: 367 K-VQSY--EREEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKVHTFPFLGR 423
Query: 503 ITEVEK--RNSSRDEVKNTQ-----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
++ + R+SS + + + M GR+ +++ ++L E L+SYT + +H L
Sbjct: 424 VSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLG 483
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGI 614
E+ ++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 484 EQKEDVQHSIITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGV 541
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+LSRG Q +V S +LR + + P +K + ++EP Y P
Sbjct: 542 PLGYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVP 597
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQQK 731
I LDF SLYPS+++A+N C++T L G + LG++ D F +K
Sbjct: 598 IATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQF-------------IK----- 639
Query: 732 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM-KE 771
+P+G FV S+R G+LP++L+ +L R K + KE
Sbjct: 640 ---TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKE 677
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 575 (207.5 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 186/657 (28%), Positives = 309/657 (47%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +++ +I R + P+P YD V I + ++ + + S P +
Sbjct: 315 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCS--P-ITGS 371
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN-------- 495
I H + E+E+ S + + + DPD++IGY YLL R L +N
Sbjct: 372 MIFSH--ATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRL 429
Query: 496 --LNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV 553
+ QE+ K +R E KN + GR+ ++L + ++ E L+SYT + H
Sbjct: 430 KTVKQEIKESVFSSKAYGTR-ETKNVNID--GRLQLDLLQFIQREYKLRSYTLNAVSAHF 486
Query: 554 LHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLF 612
L E+ + +++ + + + V Y ++ + +RL+E+L + +EMAR+
Sbjct: 487 LGEQKEDVHYSIISDLQNGDSETRRRLAV--YCLKDAYLPLRLMEKLMALVNYTEMARVT 544
Query: 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYT 672
G+ F +L+RG Q +V S + R + V P+++ +A E +I EP Y
Sbjct: 545 GVPFSYLLARGQQIKVVSQLFR--KCLEIDTVIPNMQSQASDDQYEGATVI-EPIRGYYD 601
Query: 673 DPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKL 732
PI LDF SLYPS+++A+N C++T C V +LK + +
Sbjct: 602 VPIATLDFNSLYPSIMMAHNLCYTTL----------------CNKATVERLNLK-IDEDY 644
Query: 733 TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLI 792
I+P+G FV R GILP +L E++ R K+ +++ K + + VL+ RQL LK+
Sbjct: 645 VITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEK-DPFKRDVLNGRQLALKIS 703
Query: 793 ANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQK---AIET---VNNTSKWQCRVVYGD 846
AN YG+T A G++PC+ + SV + GR + K A++ + N K VVYGD
Sbjct: 704 ANSVYGFTGATV-GKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGD 762
Query: 847 TDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYE 906
TDS+ V +EA ++G E A L+FEK Y P +L KKRY G +
Sbjct: 763 TDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWT 822
Query: 907 TADQ-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISG 965
D+ DK + KG+ +VRRD C VS ++ K L + +++ +V + + I+
Sbjct: 823 NPDKFDK--LDQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETINDILHN 880
Query: 966 RISVQDMTFAKEYR-GQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSG 1021
R+ + + +K +P A + R+ V P V +RV YVI+ G
Sbjct: 881 RVDISKLIISKTLAPNYTNPQPHAVLAERMKRREGV------GPNVGDRVDYVIIGG 931
Score = 557 (201.1 bits), Expect = 1.5e-49, Sum P(2) = 1.5e-49
Identities = 167/604 (27%), Positives = 286/604 (47%)
Query: 593 IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRA 652
+RL+E+L + +EMAR+ G+ F +L+RG Q +V S + R + V P+++ +A
Sbjct: 525 LRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFR--KCLEIDTVIPNMQSQA 582
Query: 653 HMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFP 712
E +I EP Y PI LDF SLYPS+++A+N C++T
Sbjct: 583 SDDQYEGATVI-EPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTL-------------- 627
Query: 713 FGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY 772
C V +LK + + I+P+G FV R GILP +L E++ R K+ +++
Sbjct: 628 --CNKATVERLNLK-IDEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDE 684
Query: 773 KSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQK---AI 829
K + + VL+ RQL LK+ AN YG+T A G++PC+ + SV + GR + K A+
Sbjct: 685 K-DPFKRDVLNGRQLALKISANSVYGFTGATV-GKLPCLAISSSVTAYGRTMILKTKTAV 742
Query: 830 ET---VNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFE 886
+ + N K VVYGDTDS+ V +EA ++G E A L+FE
Sbjct: 743 QEKYCIKNGYKHDAVVVYGDTDSVMVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFE 802
Query: 887 KVYQPCILQTKKRYVGYMYETADQ-DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFET 945
K Y P +L KKRY G + D+ DK + KG+ +VRRD C VS ++ K L +
Sbjct: 803 KAYFPYLLINKKRYAGLFWTNPDKFDK--LDQKGLASVRRDSCSLVSIVMNKVLKKILIE 860
Query: 946 KDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYR-GQAGYKPGACVPALSLARQWVLTDP 1004
+++ +V + + I+ R+ + + +K +P A + R+ V
Sbjct: 861 RNVDGALAFVRETINDILHNRVDISKLIISKTLAPNYTNPQPHAVLAERMKRREGV---- 916
Query: 1005 RAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFL 1064
P V +RV YVI+ G L + P +L+++ ++++S YY+T + P+ +
Sbjct: 917 --GPNVGDRVDYVIIGGND--KLYNRAEDPLFVLENN-IQVDSRYYLTNQLQNPI----I 967
Query: 1065 LLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKG-VCD 1122
+ P++ + V +N +K + + V C C + +G +C
Sbjct: 968 SIVAPIIG--DKQANGMFVVKSIKINTGSQKGGLMSFIKKVEACKSCKGPLRKGEGPLCS 1025
Query: 1123 ACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQITR 1181
CL ++ L Y ++ + ++ C C G S C + +C + Y + ++ +
Sbjct: 1026 NCLARSGELYIKALYDVRDLEEKYSRLWTQCQRCAGNLHSEVLCSNKNCDIFYMRVKVKK 1085
Query: 1182 DLDQ 1185
+L +
Sbjct: 1086 ELQE 1089
Score = 44 (20.5 bits), Expect = 1.4e-51, Sum P(2) = 1.4e-51
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 28 LPEANKMEGRAENEHMISSSESYLF-TQNKSYDSPTIVAKQTLLPLSGE 75
+P N + A ++ I+ YL T + + DS +V+KQ++ SG+
Sbjct: 162 VPAPNSSD--ANDQEQINKFVHYLNETFDHAIDSIEVVSKQSIWGYSGD 208
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 547 (197.6 bits), Expect = 3.3e-49, P = 3.3e-49
Identities = 164/603 (27%), Positives = 288/603 (47%)
Query: 593 IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRA 652
+RL+E+L + +EMAR+ G+ F +++RG Q +V S + R + + P++
Sbjct: 520 LRLLEKLMALVNYTEMARVTGVPFPYLITRGQQIKVISQLYR--KCLQIDTIIPNMHGN- 576
Query: 653 HMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFP 712
H ++EP Y PI LDF SLYPS+++A+N C++T
Sbjct: 577 HSDDQYQGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTL-------------- 622
Query: 713 FGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY 772
C V LK+ + + I+P+G FV R GILP +L+E++ R K +K+
Sbjct: 623 --CNKATVQRLQLKENEDYI-ITPNGDYFVTSKKRRGILPIILEELIAARQRAKGELKK- 678
Query: 773 KSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGR---ETLQKAI 829
+++ + VL+ RQL LK+ AN YG+T A G++PC+ + SV + GR ET ++A+
Sbjct: 679 ETDPFKKDVLNGRQLALKISANSVYGFTGATV-GKLPCLSISSSVTAYGRTMIETTKRAV 737
Query: 830 E---TVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFE 886
E T+ N K VVYGDTDS+ + ++ E+G E A L+FE
Sbjct: 738 EEKYTIKNGYKHDAIVVYGDTDSVMIKFGTNELKQTMELGAEAAAYVSSLFKHPINLEFE 797
Query: 887 KVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETK 946
KVY P +L KKRY G +Y T + + KG+ +VRRD CP VS ++ K L ++ +
Sbjct: 798 KVYFPYLLINKKRYAG-LYWTKPEKYDKLDQKGLASVRRDSCPLVSIVMNKILRMILIER 856
Query: 947 DLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRA 1006
++ ++VE ++ + + + +K Y P LA + D
Sbjct: 857 NVPGALKFVENTIEDLLQNKADISKLIISKTLA--PNYTNAQ--PHAILAERMKKRDG-V 911
Query: 1007 EPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLL 1066
P V +RV YVI+ G L ++P +L+ + ++L+S+YY+T + P+ + +
Sbjct: 912 GPNVGDRVDYVIIGGND--KLYNRAENPLYVLEQN-IQLDSKYYLTTQLQNPV----VSI 964
Query: 1067 GTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQYFASVN-CVCCNQMTQNNKG-VCDAC 1124
P++ + + + + +K + + V C C + N+G +C +C
Sbjct: 965 IAPIIG--EKQANAMFIVKSIKIATSNQKGGLMGFIKKVQTCKGCRGPLKKNEGPLCYSC 1022
Query: 1125 LNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND--CISLDCPVLYRKTQITRD 1182
++ L ++ + ++ C C G S N+ C + +C + Y + + ++
Sbjct: 1023 KERSGELYLKAVSDVRELEEKFSRLWTQCQRCSG-SLHNEVLCSNQNCDIFYMRVKARKE 1081
Query: 1183 LDQ 1185
L +
Sbjct: 1082 LQE 1084
Score = 226 (84.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 79/338 (23%), Positives = 155/338 (45%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +L+ +I R + P+P D V I + + + + ++ P +
Sbjct: 310 LRILSFDIECAGRVGVFPEPEVDPVIQIANVVSIAGESKPFIRNVFTV--DTCAP-ITGS 366
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
I H E+ + + + + + DPD++IGY YL+ R L ++ R+
Sbjct: 367 QIFEH--ETEEAMLKHWRDFLVEVDPDVIIGYNTTNFDLPYLINRAAALNVSSFPYFGRL 424
Query: 504 T---EVEKRNSSRDEVKNTQ----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
+V K + T+ + + GR+ +++++ +R E L+SYT ++ H L E
Sbjct: 425 VNSKQVIKETVFSSKAHGTRESKSINIEGRLQLDIFQFVRREYQLRSYTLNSVSAHFLGE 484
Query: 557 -RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGI 614
+ +H + + HR + Y ++ + +RL+E+L + +EMAR+ G+
Sbjct: 485 QKEDVHHSIIASL---HRGDSETRRRLAVYCLKDAYLPLRLLEKLMALVNYTEMARVTGV 541
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
F +++RG Q +V S + R + + P++ H ++EP Y P
Sbjct: 542 PFPYLITRGQQIKVISQLYR--KCLQIDTIIPNMHGN-HSDDQYQGATVIEPIRGYYDIP 598
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCLGR--VEHLGVSDS 710
I LDF SLYPS+++A+N C++T + V+ L + ++
Sbjct: 599 IATLDFNSLYPSIMMAHNLCYTTLCNKATVQRLQLKEN 636
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 535 (193.4 bits), Expect = 6.8e-48, P = 6.8e-48
Identities = 144/470 (30%), Positives = 244/470 (51%)
Query: 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVT 796
+ + FV K+++ GILP +++E+++ R VK +K K+N + VL+ RQL LK+ AN
Sbjct: 639 NNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKNEKNNIT-KMVLNGRQLALKISANSV 697
Query: 797 YGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETV------NNTSKWQCRVVYGDTDSM 850
YGYT A+ G++PC+EV S+ + GR ++K E V +N + V+YGDTDS+
Sbjct: 698 YGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSV 757
Query: 851 FVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQ 910
V +EA +GK+ A KL+FEKVY P +L KKRY G +Y ++
Sbjct: 758 MVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNK 817
Query: 911 -DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISV 969
DK + KGIETVRRD C + ++++ L L K+L+ EY + + ++++ I +
Sbjct: 818 HDK--MDCKGIETVRRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKSKIKELLTNNIDM 875
Query: 970 QDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIK 1029
+ K G+ Y+ +P + LA++ D P V +RV Y+IV G G +
Sbjct: 876 SLLVVTKSL-GKTDYETR--LPHVELAKKLKQRDSATAPNVGDRVSYIIVKGVKGQAQYE 932
Query: 1030 LVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVL 1089
+ P +L D++L ++ +Y+ I PL R F + ++ +L H ++L
Sbjct: 933 RAEDPLYVL-DNNLAIDYNHYLD-AIKSPLSRIFEV----IMQNSDSLFSGDHTRHKTIL 986
Query: 1090 NERKKKSTISQYFA-SVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQ 1148
++ +S++ SV C+ CN + +C+ C + + KI+ ++ Q++
Sbjct: 987 TS--SQTALSKFLKKSVRCIGCNSSIKKPP-LCNHCKENKEF--SIYMQKIKDFKNKQNE 1041
Query: 1149 VNKVCTTCVGRSTSN---D--CISLDCPVLYRKTQITRDLDQLS-YVLSL 1192
++ T C R N D C++ DCP+ YR+ +I +D+ L V SL
Sbjct: 1042 FFQLWTECQ-RCQGNLHVDVICMNRDCPIFYRRAKIKKDIANLQEQVTSL 1090
Score = 517 (187.1 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 167/604 (27%), Positives = 281/604 (46%)
Query: 451 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-- 508
++EK L + E + + DPD L GY I Y+L RG L L + L RI V
Sbjct: 366 NDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKFLGRIKNVASTV 425
Query: 509 RNSSRDEVK-----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 563
++SS + ++ + GRI +++ L++ + L+SYT + + L E+ +
Sbjct: 426 KDSSFSSKQFGTHETKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHY 485
Query: 564 KLLTCWWEHRTHLYKWMTVEHYLIRVTGII--RLIEQLDFIGRTSEMARLFGIQFYEVLS 621
++ K + Y I+ G++ RLI++L FI EMAR+ G F +L+
Sbjct: 486 SIMNDLQNESPESRK--RIATYCIK-DGVLPLRLIDKLLFIYNYVEMARVTGTPFVYLLT 542
Query: 622 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQ 681
RG Q +V S + R + N+V PS + + +LEP Y +PI LDF
Sbjct: 543 RGQQIKVTSQLYRKCKELNYVI--PSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLDFA 600
Query: 682 SLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAF 741
SLYPS++IA+N C+ST + + H VSD N I +++ + +
Sbjct: 601 SLYPSIMIAHNLCYSTLI-KSNH-EVSDL-------QNDDITTIQGKNNLKFVKKN---- 647
Query: 742 VDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTA 801
V K I I+ ++++ +L++K R L A ++ + T +
Sbjct: 648 VKKGILPLIVEELIEARKKVKLLIKNEKNNITKMVLNGRQL-ALKISANSVYGYTGASSG 706
Query: 802 ANFSGRMPCVEV---GDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
V + G S++ K +E ++ + +N + V+YGDTDS+ V
Sbjct: 707 GQLPCLEVAVSITTLGRSMIEKTKERVE-SFYCKSNGYEHNSTVIYGDTDSVMVKFGTNN 765
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQ-DKPIYEA 917
+EA +GK+ A KL+FEKVY P +L KKRY G +Y ++ DK +
Sbjct: 766 IEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDK--MDC 823
Query: 918 KGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKE 977
KGIETVRRD C + ++++ L L K+L+ EY + + ++++ I + + K
Sbjct: 824 KGIETVRRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKSKIKELLTNNIDMSLLVVTKS 883
Query: 978 YRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYEL 1037
G+ Y+ +P + LA++ D P V +RV Y+IV G G + + P +
Sbjct: 884 L-GKTDYETR--LPHVELAKKLKQRDSATAPNVGDRVSYIIVKGVKGQAQYERAEDPLYV 940
Query: 1038 LQDS 1041
L ++
Sbjct: 941 LDNN 944
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 535 (193.4 bits), Expect = 6.8e-48, P = 6.8e-48
Identities = 144/470 (30%), Positives = 244/470 (51%)
Query: 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVT 796
+ + FV K+++ GILP +++E+++ R VK +K K+N + VL+ RQL LK+ AN
Sbjct: 639 NNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKNEKNNIT-KMVLNGRQLALKISANSV 697
Query: 797 YGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETV------NNTSKWQCRVVYGDTDSM 850
YGYT A+ G++PC+EV S+ + GR ++K E V +N + V+YGDTDS+
Sbjct: 698 YGYTGASSGGQLPCLEVAVSITTLGRSMIEKTKERVESFYCKSNGYEHNSTVIYGDTDSV 757
Query: 851 FVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQ 910
V +EA +GK+ A KL+FEKVY P +L KKRY G +Y ++
Sbjct: 758 MVKFGTNNIEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNK 817
Query: 911 -DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISV 969
DK + KGIETVRRD C + ++++ L L K+L+ EY + + ++++ I +
Sbjct: 818 HDK--MDCKGIETVRRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKSKIKELLTNNIDM 875
Query: 970 QDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIK 1029
+ K G+ Y+ +P + LA++ D P V +RV Y+IV G G +
Sbjct: 876 SLLVVTKSL-GKTDYETR--LPHVELAKKLKQRDSATAPNVGDRVSYIIVKGVKGQAQYE 932
Query: 1030 LVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVL 1089
+ P +L D++L ++ +Y+ I PL R F + ++ +L H ++L
Sbjct: 933 RAEDPLYVL-DNNLAIDYNHYLD-AIKSPLSRIFEV----IMQNSDSLFSGDHTRHKTIL 986
Query: 1090 NERKKKSTISQYFA-SVNCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQ 1148
++ +S++ SV C+ CN + +C+ C + + KI+ ++ Q++
Sbjct: 987 TS--SQTALSKFLKKSVRCIGCNSSIKKPP-LCNHCKENKEF--SIYMQKIKDFKNKQNE 1041
Query: 1149 VNKVCTTCVGRSTSN---D--CISLDCPVLYRKTQITRDLDQLS-YVLSL 1192
++ T C R N D C++ DCP+ YR+ +I +D+ L V SL
Sbjct: 1042 FFQLWTECQ-RCQGNLHVDVICMNRDCPIFYRRAKIKKDIANLQEQVTSL 1090
Score = 517 (187.1 bits), Expect = 6.2e-46, P = 6.2e-46
Identities = 167/604 (27%), Positives = 281/604 (46%)
Query: 451 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-- 508
++EK L + E + + DPD L GY I Y+L RG L L + L RI V
Sbjct: 366 NDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKFLGRIKNVASTV 425
Query: 509 RNSSRDEVK-----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 563
++SS + ++ + GRI +++ L++ + L+SYT + + L E+ +
Sbjct: 426 KDSSFSSKQFGTHETKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHY 485
Query: 564 KLLTCWWEHRTHLYKWMTVEHYLIRVTGII--RLIEQLDFIGRTSEMARLFGIQFYEVLS 621
++ K + Y I+ G++ RLI++L FI EMAR+ G F +L+
Sbjct: 486 SIMNDLQNESPESRK--RIATYCIK-DGVLPLRLIDKLLFIYNYVEMARVTGTPFVYLLT 542
Query: 622 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQ 681
RG Q +V S + R + N+V PS + + +LEP Y +PI LDF
Sbjct: 543 RGQQIKVTSQLYRKCKELNYVI--PSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLDFA 600
Query: 682 SLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAF 741
SLYPS++IA+N C+ST + + H VSD N I +++ + +
Sbjct: 601 SLYPSIMIAHNLCYSTLI-KSNH-EVSDL-------QNDDITTIQGKNNLKFVKKN---- 647
Query: 742 VDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTA 801
V K I I+ ++++ +L++K R L A ++ + T +
Sbjct: 648 VKKGILPLIVEELIEARKKVKLLIKNEKNNITKMVLNGRQL-ALKISANSVYGYTGASSG 706
Query: 802 ANFSGRMPCVEV---GDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
V + G S++ K +E ++ + +N + V+YGDTDS+ V
Sbjct: 707 GQLPCLEVAVSITTLGRSMIEKTKERVE-SFYCKSNGYEHNSTVIYGDTDSVMVKFGTNN 765
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQ-DKPIYEA 917
+EA +GK+ A KL+FEKVY P +L KKRY G +Y ++ DK +
Sbjct: 766 IEEAMTLGKDAAERISKEFLSPIKLEFEKVYCPYLLLNKKRYAGLLYTNPNKHDK--MDC 823
Query: 918 KGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKE 977
KGIETVRRD C + ++++ L L K+L+ EY + + ++++ I + + K
Sbjct: 824 KGIETVRRDFCILIQQMMETVLNKLLIEKNLNSAIEYTKSKIKELLTNNIDMSLLVVTKS 883
Query: 978 YRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYEL 1037
G+ Y+ +P + LA++ D P V +RV Y+IV G G + + P +
Sbjct: 884 L-GKTDYETR--LPHVELAKKLKQRDSATAPNVGDRVSYIIVKGVKGQAQYERAEDPLYV 940
Query: 1038 LQDS 1041
L ++
Sbjct: 941 LDNN 944
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 533 (192.7 bits), Expect = 7.9e-48, P = 7.9e-48
Identities = 135/410 (32%), Positives = 214/410 (52%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG+++
Sbjct: 585 VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTED---------- 634
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
+ +K +P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 635 --QFIK--------TPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAK-ETDPLRRQ 683
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IET---VNN 834
VL RQL LK+ AN YG+T A GR+PC+E+ SV GR+ ++K +ET V N
Sbjct: 684 VLDGRQLALKVSANSVYGFTGAQV-GRLPCLEISQSVTGFGRQMIEKTKQLVETKYTVEN 742
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 743 GYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLL 802
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL L +D S +
Sbjct: 803 ISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPSGAVAH 862
Query: 955 VEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
+ S ++ RI + + KE R A Y + LA + DP + P + +R
Sbjct: 863 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 920
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCF 1063
VPYVI+S A G+ + P +L+ S L ++++YY+ + + PL R F
Sbjct: 921 VPYVIISAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIF 969
Score = 250 (93.1 bits), Expect = 3.7e-17, P = 3.7e-17
Identities = 80/277 (28%), Positives = 137/277 (49%)
Query: 464 VRQWDPDILIGYEIETLSWGYLLER-------GY-VLG--LNLNQELSRITEVEKRNSSR 513
+R DPD++ GY I+ YL+ R G+ +LG + L + R + + R + R
Sbjct: 384 IRIMDPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGRVIGLRSNI-RESSFQSRQTGR 442
Query: 514 DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHR 573
+ K + M GR+ +++ ++L E L+SYT + +H L E+ ++T
Sbjct: 443 RDSK--VVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQNGN 500
Query: 574 THLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIM 632
+ + V Y ++ + +RL+E+L + EMAR+ G+ +LSRG Q +V S +
Sbjct: 501 DQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQQVKVVSQL 558
Query: 633 LRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYN 692
LR + + P +K + ++EP Y PI LDF SLYPS+++A+N
Sbjct: 559 LRQAMRQGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVPIATLDFSSLYPSIMMAHN 614
Query: 693 YCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIR 723
C++T L G + LG++ D F P G + S+R
Sbjct: 615 LCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKASVR 651
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 517 (187.1 bits), Expect = 6.8e-46, P = 6.8e-46
Identities = 132/410 (32%), Positives = 212/410 (51%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNV 720
++EP Y PI LDF SLYPS+++A+N C++T L G + LG++
Sbjct: 586 VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKD---------- 635
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
+ +K +P+G FV S+R G+LP++L+ +L R K + + +++ ++
Sbjct: 636 --QFIK--------TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAK-ETDPLRRQ 684
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IE---TVNN 834
VL RQL LK+ AN YG+T A G++PC+E+ SV GR+ ++K +E TV N
Sbjct: 685 VLDGRQLALKVSANSVYGFTGAQV-GKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVEN 743
Query: 835 TSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCIL 894
+VVYGDTDS+ + EA +G+E A +L+FEKVY P +L
Sbjct: 744 GYSANAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPPPIRLEFEKVYFPYLL 803
Query: 895 QTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEY 954
+KKRY G ++ + + KG+E VRRD CP V+ ++ SL L +D + +
Sbjct: 804 ISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPAGAVAH 863
Query: 955 VEKQFSKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
+ S ++ RI + + KE R A Y + LA + DP + P + +R
Sbjct: 864 AQDVISDLLCNRIDISQLVITKELTRAAADYAGKQA--HVELAERMRKRDPGSAPSLGDR 921
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCF 1063
VPYVI+ A G+ + P +L+ S L ++++YY+ + + PL R F
Sbjct: 922 VPYVIIGAAKGVAAYMKSEDPLFVLEHS-LPIDTQYYLEQQLAKPLLRIF 970
Score = 296 (109.3 bits), Expect = 5.1e-22, P = 5.1e-22
Identities = 110/401 (27%), Positives = 187/401 (46%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 442
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 366
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
K +Q + E+EL + +R DPD++ GY I+ YL+ R L ++ L R
Sbjct: 367 K-VQSY--EREEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKVHTFPFLGR 423
Query: 503 ITEVEK--RNSSRDEVKNTQ-----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
++ + R+SS + + + M GR+ +++ ++L E L+SYT + +H L
Sbjct: 424 VSGLRSNIRDSSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLG 483
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGI 614
E+ ++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 484 EQKEDVQHSIITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGV 541
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 674
+LSRG Q +V S +LR + + P +K + ++EP Y P
Sbjct: 542 PLGYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVP 597
Query: 675 IIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQQK 731
I LDF SLYPS+++A+N C++T L G + LG++ D F +K
Sbjct: 598 IATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTKDQF-------------IK----- 639
Query: 732 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM-KE 771
+P+G FV S+R G+LP++L+ +L R K + KE
Sbjct: 640 ---TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKE 677
>UNIPROTKB|I3LER4 [details] [associations]
symbol:I3LER4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR012337 Pfam:PF00136
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 GeneTree:ENSGT00550000074640 EMBL:CU915528
Ensembl:ENSSSCT00000026918 Uniprot:I3LER4
Length = 127
Score = 463 (168.0 bits), Expect = 9.7e-43, P = 9.7e-43
Identities = 82/125 (65%), Positives = 111/125 (88%)
Query: 582 VEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNF 641
V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF VL+RGSQ+RVES+MLR+++ N+
Sbjct: 2 VDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNY 61
Query: 642 VAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 701
+ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VLDFQSLYPS++IAYNYCFSTCLG
Sbjct: 62 IPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGH 121
Query: 702 VEHLG 706
VE+LG
Sbjct: 122 VENLG 126
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 453 (164.5 bits), Expect = 7.8e-40, Sum P(2) = 7.8e-40
Identities = 120/366 (32%), Positives = 189/366 (51%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSI 722
++EP Y PI LDF SLYPS+I A+N C++T L + N S+
Sbjct: 581 VIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNK-----------------N-SV 622
Query: 723 RSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVL 782
+KK + ++P+G F +R G+L ++L+E+L R K+ + + +++ + VL
Sbjct: 623 AGMKK-DEDYIVTPNGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ-ETDPFKKAVL 680
Query: 783 HARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IE---TVNNTS 836
+ RQL LK+ AN YG T A G++PC+ + S S GR+ ++K +E T+ N
Sbjct: 681 NGRQLALKVSANSVYGLTGATV-GKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGY 739
Query: 837 KWQCRVVYGDTDSMFVLAPGKTK-QEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQ 895
+V+YGDTDS+ V G T+ +EA ++G+E + KL+FEKVY P +L
Sbjct: 740 SHDAKVIYGDTDSVMVKF-GVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLI 798
Query: 896 TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYV 955
KKRY G +Y T + + KGIETVRRD C V +++ L + +D+ +EYV
Sbjct: 799 NKKRYAG-LYWTNPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYV 857
Query: 956 EKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVP 1015
+ S ++ +I + + K + A V LA + D + P + +RV
Sbjct: 858 KDTISDLLQNKIDMSKLVITKALTKDSYTAKQAHV---ELAERMRKRDAGSAPTLGDRVA 914
Query: 1016 YVIVSG 1021
YVIV G
Sbjct: 915 YVIVKG 920
Score = 430 (156.4 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 159/608 (26%), Positives = 279/608 (45%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +L+ +I R + P+P +D V I + T E + + + L V T+
Sbjct: 305 LRILSFDIECAGRKGIFPEPNHDPVIQIANVV-TRYGESKPFIRNVFVMNTCSLI-VNTQ 362
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
++ F EK L + + + +++ DPD++IGY I + YLL+R L +R+
Sbjct: 363 ILE--FQQEEKMLMA-WRDFIQKVDPDVIIGYNIANFDFPYLLDRAKHLKCTNFPYWTRL 419
Query: 504 ----TEVEKRNSSRDEVKNTQLQMP---GRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
+E + N S ++ N + GR+ ++L +L++ + NL+SYT ++ Y L E
Sbjct: 420 NGMRSEAKDTNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDHNLRSYTLNSVSYEFLGE 479
Query: 557 -RIPLHSWKLLTCWW---EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLF 612
+ +H + + + R L + + YL + RL+++L + +EMAR+
Sbjct: 480 QKEDVHHTMITELYNGTPDSRRRLAVYCLKDAYLPQ-----RLMDKLMCLVNYTEMARVT 534
Query: 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYT 672
G+ F +LSRG Q + S + R + V P++K + ++EP Y
Sbjct: 535 GVPFNFLLSRGQQVKFLSQLYRKALQQQLVI--PNMKSTDEQDYEGAT--VIEPIRDYYD 590
Query: 673 DPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKL 732
PI LDF SLYPS+I A+N C++T L + G+ + + N + K++
Sbjct: 591 VPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDY-IVTPNGDMFCTPKVR--- 646
Query: 733 TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLI 792
K + IL ++L + + Q +K R L A ++ +
Sbjct: 647 -----------KGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQL-ALKVSANSV 694
Query: 793 ANVTYGYTAANF---SGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDS 849
+T G T + G ++ K ++ ++ A T+ N +V+YGDTDS
Sbjct: 695 YGLT-GATVGKLPCLAIASSTTSYGRQMIEKTKQEVE-ARYTIANGYSHDAKVIYGDTDS 752
Query: 850 MFVLAPGKTK-QEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETA 908
+ V G T+ +EA ++G+E + KL+FEKVY P +L KKRY G +Y T
Sbjct: 753 VMVKF-GVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG-LYWTN 810
Query: 909 DQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRIS 968
+ + KGIETVRRD C V +++ L + +D+ +EYV+ S ++ +I
Sbjct: 811 PKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYVKDTISDLLQNKID 870
Query: 969 VQDMTFAK 976
+ + K
Sbjct: 871 MSKLVITK 878
Score = 60 (26.2 bits), Expect = 7.8e-40, Sum P(2) = 7.8e-40
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 1120 VCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQ 1178
VC++C + L T K+ + ++ C C G C S DCP+ Y + +
Sbjct: 963 VCESCRPRLGELYTKSMNKMSDLEVRFGRLWTQCQRCQGSLHCEVICSSRDCPIFYMRMK 1022
Query: 1179 ITRDLDQLSYVLSLCD 1194
+D++ L+ D
Sbjct: 1023 AKKDVEDAQKELARFD 1038
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 453 (164.5 bits), Expect = 7.8e-40, Sum P(2) = 7.8e-40
Identities = 120/366 (32%), Positives = 189/366 (51%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSI 722
++EP Y PI LDF SLYPS+I A+N C++T L + N S+
Sbjct: 581 VIEPIRDYYDVPIATLDFASLYPSIIQAHNLCYTTLLNK-----------------N-SV 622
Query: 723 RSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVL 782
+KK + ++P+G F +R G+L ++L+E+L R K+ + + +++ + VL
Sbjct: 623 AGMKK-DEDYIVTPNGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ-ETDPFKKAVL 680
Query: 783 HARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKA---IE---TVNNTS 836
+ RQL LK+ AN YG T A G++PC+ + S S GR+ ++K +E T+ N
Sbjct: 681 NGRQLALKVSANSVYGLTGATV-GKLPCLAIASSTTSYGRQMIEKTKQEVEARYTIANGY 739
Query: 837 KWQCRVVYGDTDSMFVLAPGKTK-QEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQ 895
+V+YGDTDS+ V G T+ +EA ++G+E + KL+FEKVY P +L
Sbjct: 740 SHDAKVIYGDTDSVMVKF-GVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLI 798
Query: 896 TKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYV 955
KKRY G +Y T + + KGIETVRRD C V +++ L + +D+ +EYV
Sbjct: 799 NKKRYAG-LYWTNPKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYV 857
Query: 956 EKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVP 1015
+ S ++ +I + + K + A V LA + D + P + +RV
Sbjct: 858 KDTISDLLQNKIDMSKLVITKALTKDSYTAKQAHV---ELAERMRKRDAGSAPTLGDRVA 914
Query: 1016 YVIVSG 1021
YVIV G
Sbjct: 915 YVIVKG 920
Score = 430 (156.4 bits), Expect = 2.6e-37, Sum P(2) = 2.6e-37
Identities = 159/608 (26%), Positives = 279/608 (45%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +L+ +I R + P+P +D V I + T E + + + L V T+
Sbjct: 305 LRILSFDIECAGRKGIFPEPNHDPVIQIANVV-TRYGESKPFIRNVFVMNTCSLI-VNTQ 362
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
++ F EK L + + + +++ DPD++IGY I + YLL+R L +R+
Sbjct: 363 ILE--FQQEEKMLMA-WRDFIQKVDPDVIIGYNIANFDFPYLLDRAKHLKCTNFPYWTRL 419
Query: 504 ----TEVEKRNSSRDEVKNTQLQMP---GRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
+E + N S ++ N + GR+ ++L +L++ + NL+SYT ++ Y L E
Sbjct: 420 NGMRSEAKDTNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDHNLRSYTLNSVSYEFLGE 479
Query: 557 -RIPLHSWKLLTCWW---EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLF 612
+ +H + + + R L + + YL + RL+++L + +EMAR+
Sbjct: 480 QKEDVHHTMITELYNGTPDSRRRLAVYCLKDAYLPQ-----RLMDKLMCLVNYTEMARVT 534
Query: 613 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYT 672
G+ F +LSRG Q + S + R + V P++K + ++EP Y
Sbjct: 535 GVPFNFLLSRGQQVKFLSQLYRKALQQQLVI--PNMKSTDEQDYEGAT--VIEPIRDYYD 590
Query: 673 DPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKL 732
PI LDF SLYPS+I A+N C++T L + G+ + + N + K++
Sbjct: 591 VPIATLDFASLYPSIIQAHNLCYTTLLNKNSVAGMKKDEDY-IVTPNGDMFCTPKVR--- 646
Query: 733 TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLI 792
K + IL ++L + + Q +K R L A ++ +
Sbjct: 647 -----------KGLLSQILEELLSARKKAKKELAQETDPFKKAVLNGRQL-ALKVSANSV 694
Query: 793 ANVTYGYTAANF---SGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDS 849
+T G T + G ++ K ++ ++ A T+ N +V+YGDTDS
Sbjct: 695 YGLT-GATVGKLPCLAIASSTTSYGRQMIEKTKQEVE-ARYTIANGYSHDAKVIYGDTDS 752
Query: 850 MFVLAPGKTK-QEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETA 908
+ V G T+ +EA ++G+E + KL+FEKVY P +L KKRY G +Y T
Sbjct: 753 VMVKF-GVTELEEAMKLGQEASEYVSSKFIKPIKLEFEKVYFPYLLINKKRYAG-LYWTN 810
Query: 909 DQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRIS 968
+ + KGIETVRRD C V +++ L + +D+ +EYV+ S ++ +I
Sbjct: 811 PKKYDKMDTKGIETVRRDNCLLVQNVIETVLHKILIDRDVEAAQEYVKDTISDLLQNKID 870
Query: 969 VQDMTFAK 976
+ + K
Sbjct: 871 MSKLVITK 878
Score = 60 (26.2 bits), Expect = 7.8e-40, Sum P(2) = 7.8e-40
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 1120 VCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSND-CISLDCPVLYRKTQ 1178
VC++C + L T K+ + ++ C C G C S DCP+ Y + +
Sbjct: 963 VCESCRPRLGELYTKSMNKMSDLEVRFGRLWTQCQRCQGSLHCEVICSSRDCPIFYMRMK 1022
Query: 1179 ITRDLDQLSYVLSLCD 1194
+D++ L+ D
Sbjct: 1023 AKKDVEDAQKELARFD 1038
>UNIPROTKB|Q59J88 [details] [associations]
symbol:Q59J88 "DNA polymerase" species:8517 "Iguana iguana"
[GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178527 Uniprot:Q59J88
Length = 1441
Score = 289 (106.8 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 89/353 (25%), Positives = 159/353 (45%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D S+ GILPK ++++++ R VKQ MK+ N+ L RQ LKL AN YG
Sbjct: 874 DSSLDMGILPKEIRKLVERRRQVKQLMKQPDLNSDLYLQYDIRQKALKLTANSMYGCLGF 933
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L E V K V+YGDTDS+ + +E
Sbjct: 934 SYS-RFYAKPLAALVTFKGREILMHTKEMVE---KMNLEVIYGDTDSIMINTNITNLEEV 989
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI--YEAKGI 920
F++G +I ++ + +++ +L KK+Y + E K I E KG+
Sbjct: 990 FKLGNKIKSEVNKLYKLL-EIDIDGIFKSLLLLKKKKYAALVVEPTGDGKYITKQELKGL 1048
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ VRRD C + + + + V+ E ++++ +I ++G + ++ K
Sbjct: 1049 DIVRRDWCDLAKETGNYIISQILSDQFRDVIVENIQRRLIQIGENVVNGSVPIKQFEINK 1108
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI L + +P
Sbjct: 1109 ALTKDPQDYPDKKSLPHVHVAL-WINSQEGRKLKAGDTVSYVICQDGSNLSASQRAYAPE 1167
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER-CFLLLGTP---VLPWYKNLPRKLHVY 1084
+L + +L ++++YY+++ I P + R C + G + W P + VY
Sbjct: 1168 QLKKQENLAIDTQYYLSQQIHPVVARICEPIDGIDSVLIAAWLGLDPSQFKVY 1220
Score = 108 (43.1 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 29/87 (33%), Positives = 46/87 (52%)
Query: 655 RAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVE---HLGVSDS- 710
+A S L+LEP+ Y I++LDF SLYPS+I +N CF+T + RV H D
Sbjct: 807 KAAYSGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT-VHRVSSSLHKNTEDGE 865
Query: 711 ------FPFGCIDLNVSIRSLKKLQQK 731
P +D+ + + ++KL ++
Sbjct: 866 EEEIPELPDSSLDMGILPKEIRKLVER 892
Score = 99 (39.9 bits), Expect = 1.2e-31, Sum P(3) = 1.2e-31
Identities = 44/223 (19%), Positives = 94/223 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
V+TK ++ + E+ L F+ V + DPD+++G+ I LL+R + +
Sbjct: 574 VKTKNAKIEIATTERTLLGFFLAKVHKIDPDVIVGHNIYGFDLELLLQRINFCKVPHWSK 633
Query: 500 LSRI--TEVEKRNS-SRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH- 555
+ R+ + + K S KN GR++ ++ + + +SY ++ +L
Sbjct: 634 IGRLRRSNMPKLGGRSGFAEKNATC---GRMICDVEISAKELIRCKSYHLTELVNQILKV 690
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQ 615
ERI + ++ + + R LY VE+ I++++ L+ + ++ + G
Sbjct: 691 ERITVPPEEIRNMYSDPRQLLYM---VENTWTDAKYILQIMCDLNVLPLALQITNIAGNV 747
Query: 616 FYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPE 658
L G R E ++L NF+ + ++ + E
Sbjct: 748 MSRTLMGGRAERNEYLLLHAFYEKNFIVPDKQLFKKTQKQLEE 790
Score = 40 (19.1 bits), Expect = 2.5e-18, Sum P(3) = 2.5e-18
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 432 GQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQ 466
G+E E+PE+ + M + KE+ + +E RQ
Sbjct: 864 GEEEEIPELPDSSLDMGILP--KEIRKL-VERRRQ 895
Score = 38 (18.4 bits), Expect = 2.5e-25, Sum P(3) = 2.5e-25
Identities = 9/37 (24%), Positives = 19/37 (51%)
Query: 380 ENYYLTVLAVEIHAISRALLKPDPA---YDEVKAIFY 413
++Y+LT L +I + R + P+ Y + + + Y
Sbjct: 676 KSYHLTELVNQILKVERITVPPEEIRNMYSDPRQLLY 712
Score = 38 (18.4 bits), Expect = 2.3e-05, Sum P(3) = 2.3e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 1076 NLPRKLHVYLPSVLNERKKKSTISQYFAS 1104
NL Y P L +++ + +QY+ S
Sbjct: 1156 NLSASQRAYAPEQLKKQENLAIDTQYYLS 1184
>RGD|621816 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA;ISO;ISS] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=ISO;ISS] [GO:0000785 "chromatin"
evidence=ISO;ISS] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO;ISS] [GO:0003682
"chromatin binding" evidence=ISO;ISS] [GO:0003690 "double-stranded
DNA binding" evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISO;ISS;IDA;IMP] [GO:0003896 "DNA primase
activity" evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005635 "nuclear envelope" evidence=ISO;ISS] [GO:0005654
"nucleoplasm" evidence=ISO;ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IC;ISO;ISS;IDA] [GO:0005730
"nucleolus" evidence=ISO;ISS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO;ISS;IMP] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=ISO;ISS]
[GO:0006270 "DNA replication initiation" evidence=ISO;ISS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO;ISS] [GO:0006272 "leading strand elongation"
evidence=ISO;ISS] [GO:0006273 "lagging strand elongation"
evidence=ISO;ISS] [GO:0006281 "DNA repair" evidence=ISO;ISS]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;ISS;IBA] [GO:0008283 "cell
proliferation" evidence=ISO;ISS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix"
evidence=ISO;ISS] [GO:0017076 "purine nucleotide binding"
evidence=IMP] [GO:0019103 "pyrimidine nucleotide binding"
evidence=IMP] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:621816
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 282 (104.3 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 82/326 (25%), Positives = 145/326 (44%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D ++ GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG
Sbjct: 910 DPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGF 969
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L E V K V+YGDTDS+ + +E
Sbjct: 970 SYS-RFYAKPLAALVTYKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNSTNLEEV 1025
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI--YEAKGI 920
F++G ++ ++ + V++ +L KK+Y + E I E KG+
Sbjct: 1026 FKLGNKVKNEVNKLYKLL-EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGL 1084
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ VRRD C + + + + E ++K+ +I ++G + V K
Sbjct: 1085 DIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINK 1144
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI LP + +P
Sbjct: 1145 ALTKDPQDYPDKKSLPHVHVAL-WINSQGGRKVKAGDTVSYVICQDGSNLPATQRAYAPE 1203
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
+L + +L ++++YY+ + I P + R
Sbjct: 1204 QLQKQDNLAIDTQYYLAQQIHPVVAR 1229
Score = 109 (43.4 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 42/218 (19%), Positives = 93/218 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
++ K +++ + E+ L F+ V + DPDIL+G+ I LL+R + +
Sbjct: 609 IKKKNMEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPFWSK 668
Query: 500 LSRITEVEK-RNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ER 557
+ R+ + SR GR++ ++ ++ ++ +SY ++ +L ER
Sbjct: 669 IGRLRRSNMPKLGSRSGFGERNATC-GRMICDVEISVKELIHCKSYHLSELVQQILKTER 727
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
I + + + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 728 IVIPTENIRNMYSEPSHLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMS 784
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 655
L G R E ++L NN++ I ++ +
Sbjct: 785 RTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 822
Score = 99 (39.9 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 850 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 885
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 1076 NLPRKLHVYLPSVLNERKKKSTISQYF 1102
NLP Y P L ++ + +QY+
Sbjct: 1192 NLPATQRAYAPEQLQKQDNLAIDTQYY 1218
>UNIPROTKB|O89042 [details] [associations]
symbol:Pola1 "DNA polymerase alpha catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
RGD:621816 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 282 (104.3 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 82/326 (25%), Positives = 145/326 (44%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D ++ GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG
Sbjct: 910 DPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGF 969
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L E V K V+YGDTDS+ + +E
Sbjct: 970 SYS-RFYAKPLAALVTYKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNSTNLEEV 1025
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI--YEAKGI 920
F++G ++ ++ + V++ +L KK+Y + E I E KG+
Sbjct: 1026 FKLGNKVKNEVNKLYKLL-EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGL 1084
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ VRRD C + + + + E ++K+ +I ++G + V K
Sbjct: 1085 DIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINK 1144
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI LP + +P
Sbjct: 1145 ALTKDPQDYPDKKSLPHVHVAL-WINSQGGRKVKAGDTVSYVICQDGSNLPATQRAYAPE 1203
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
+L + +L ++++YY+ + I P + R
Sbjct: 1204 QLQKQDNLAIDTQYYLAQQIHPVVAR 1229
Score = 109 (43.4 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 42/218 (19%), Positives = 93/218 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
++ K +++ + E+ L F+ V + DPDIL+G+ I LL+R + +
Sbjct: 609 IKKKNMEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPFWSK 668
Query: 500 LSRITEVEK-RNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ER 557
+ R+ + SR GR++ ++ ++ ++ +SY ++ +L ER
Sbjct: 669 IGRLRRSNMPKLGSRSGFGERNATC-GRMICDVEISVKELIHCKSYHLSELVQQILKTER 727
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
I + + + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 728 IVIPTENIRNMYSEPSHLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMS 784
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 655
L G R E ++L NN++ I ++ +
Sbjct: 785 RTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 822
Score = 99 (39.9 bits), Expect = 5.7e-31, Sum P(3) = 5.7e-31
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 850 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 885
Score = 40 (19.1 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 1076 NLPRKLHVYLPSVLNERKKKSTISQYF 1102
NLP Y P L ++ + +QY+
Sbjct: 1192 NLPATQRAYAPEQLQKQDNLAIDTQYY 1218
>UNIPROTKB|Q59J90 [details] [associations]
symbol:Q59J90 "DNA polymerase" species:8296 "Ambystoma
mexicanum" [GO:0000084 "S phase of mitotic cell cycle"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0003677
GO:GO:0008283 GO:GO:0003682 GO:GO:0006270 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0006303
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 HOVERGEN:HBG080008 EMBL:AB178525 Uniprot:Q59J90
Length = 1409
Score = 283 (104.7 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 86/370 (23%), Positives = 160/370 (43%)
Query: 705 LGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVA------FVDKSIRCGILPKMLQEI 758
L + +P + N+ ++++L P G D + GILP+ ++++
Sbjct: 806 LDFNSLYPSIIQEFNICFTTVQRLDSNAQKMPEGEEQDDIPQLPDPDLELGILPREIRKL 865
Query: 759 LDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVV 818
++ R VKQ MK+ N L RQ LKL AN YG +FS R + V
Sbjct: 866 VERRRQVKQLMKQSDLNPDLYMQYDIRQKALKLTANSMYGCLGFSFS-RFYAKPLAALVT 924
Query: 819 SKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXXXX 878
KGRE L + T + K V+YGDTDS+ + +E F++G ++
Sbjct: 925 HKGREIL---LHTRDMVQKMNLEVIYGDTDSIMINTNSTNLEEVFKLGNKVKSEVNKLYK 981
Query: 879 XXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI--YEAKGIETVRRDGCPAVSKILK 936
++ + V++ +L KK+Y E A K + E KG++ VRRD C +
Sbjct: 982 QL-EIDIDGVFKSLLLLKKKKYAALTMEPAGDGKYVTKQELKGLDIVRRDWCDLAKETGN 1040
Query: 937 KSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAKEY-RGQAGYKPGACVP 991
+ + + + E ++KQ +I ++G I + K + Y +P
Sbjct: 1041 YIITQILSDQPRDTIVENIQKQLIEIGENVVNGSIPINQYEINKALTKDPQDYPDKKSLP 1100
Query: 992 ALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYI 1051
+ +A W+ + + + + V Y+I L + + +L + +L ++++YY+
Sbjct: 1101 HVHVAL-WINSQGGRKMKAGDTVSYIICQDGSNLSASQRAYALEQLQKQDNLAIDTQYYL 1159
Query: 1052 TRVIIPPLER 1061
++ + P + R
Sbjct: 1160 SQQVHPVVAR 1169
Score = 101 (40.6 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 38/214 (17%), Positives = 90/214 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
++ K + E+ L + + + DPD+++G++I LL+R V + +
Sbjct: 549 IKQKNANIEVALTERTLLGFLLAKIHKIDPDVIVGHDIYGFDLEVLLQRINVCKVPHWSK 608
Query: 500 LSRITE-VEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ER 557
+ R+ + + R GR++ ++ + + +SY +++ +L ER
Sbjct: 609 IGRLRRSIMPKLGGRSGFAERNAAC-GRMICDVQISAKELIRCKSYHLSELVHQILKTER 667
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
+ + + + + LY +EH + I++++ +L+ + ++ + G
Sbjct: 668 LIIPGENIRNYYSDSPQLLYM---LEHTWLDTKFILQIMCELNVLPLALQITNIAGNVMS 724
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFVAVS-PSIKQ 650
L G R E ++L NNF+ P+ K+
Sbjct: 725 RTLMGGRSERNEYLLLHAFYENNFIVPDKPTFKK 758
Score = 100 (40.3 bits), Expect = 2.1e-30, Sum P(3) = 2.1e-30
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 649 KQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
+++ +A + L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 777 QKKVRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 825
>UNIPROTKB|Q8TSB3 [details] [associations]
symbol:MA_0885 "DNA polymerase" species:188937
"Methanosarcina acetivorans C2A" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 EMBL:AE010299
GenomeReviews:AE010299_GR eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 OMA:RSFRPYF HSSP:Q56366
KO:K02319 RefSeq:NP_615844.1 ProteinModelPortal:Q8TSB3
GeneID:1472777 KEGG:mac:MA0885 ProtClustDB:CLSK568782
BioCyc:MACE188937:GI2O-954-MONOMER Uniprot:Q8TSB3
Length = 937
Score = 372 (136.0 bits), Expect = 2.3e-30, P = 2.3e-30
Identities = 152/642 (23%), Positives = 296/642 (46%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 511
+E E+ + F E + ++DPDI+ GY + Y+ ER V L E I V R+
Sbjct: 252 DETEMLNKFFEIICEYDPDIVAGYNHQDFDIPYITER--VKALVAKGET--INSVVGRDG 307
Query: 512 SRDEVKN----TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL-HERIPLHSWKLL 566
S + T+ +M GR+V++ L+R +L+ YT + +L E++ + ++
Sbjct: 308 SPIGYRKFGLITRTEMKGRVVVDALPLVRRAFSLKQYTLRAVSKELLSREKLDVPPLEME 367
Query: 567 TCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 625
W + K++ Y R + + + L+ +L + + +A++ G E++ G
Sbjct: 368 EHWNDSGDKFRKFVD---YARRDSELALELVLELRLLDKYIALAQVSGSLLQEIVDGGQT 424
Query: 626 FRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPL----ILEPESRLYTDPIIVLDFQ 681
VE+++LR L + V + + + R S L +LEP+ L + +++LD++
Sbjct: 425 SMVETLLLREFGLKDRVILPKPGDELSAERYDMSSDLKGGEVLEPKKGLLEN-VLILDYK 483
Query: 682 SLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFG--CIDLNVSIRSLKKLQQKLTISPSGV 739
SLYP++++A+N C++T + R G + P G + V + + + L ++ G
Sbjct: 484 SLYPTIMMAHNLCYTTVVTRDRPDGKTIKPPSGGEFVPPEVFRGIVPSILEDL-LNKRGD 542
Query: 740 AFVDKSIRCGILPKMLQEILD-TRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
K ++ + +LD T+L +K + + + R AR L L AN
Sbjct: 543 T--KKRMK-RTSDENEHRVLDATQLAIKILLNSFYGYSGYAR---ARLYSLTL-ANAVTS 595
Query: 799 YTAANFSGRMPCVE--VGDSVVSKGRETLQKAIETVNNTSKW-QCRVVYGDTDSMFVLAP 855
+ +N + +G V+ L + ++ + + V YGDTDS+FV
Sbjct: 596 FGRSNILNTRDLINGRIGKIVLRNSAALLLEEAGKLSPQDRIVELSVAYGDTDSVFVHCK 655
Query: 856 GK---TKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQD- 911
K + +E +G ++ +L+FE V + +L KKRY +++E +
Sbjct: 656 AKGDLSLEEVSLVGNRLSEIVSASLPDPMELEFESVAKRALLIAKKRYALWLFEPRNSGW 715
Query: 912 KPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIIS---GRIS 968
+ + KG+ETVRRD C S L + L + D+ E+V K S + + G+ +
Sbjct: 716 ENKIKVKGMETVRRDWCELTSITLNRVLEFVLIEGDVDKAVEHVRKVVSDVRNLDPGKDA 775
Query: 969 --VQDMTFAKEYRGQA-GYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGL 1025
++ + + +A YK P L++A + P + R+P+VI +G GL
Sbjct: 776 GIIEKLVLTRTLTRKADSYKNKQ--PHLTVAEN-LKKRTGIMPSIGTRIPFVITAGK-GL 831
Query: 1026 PLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLG 1067
+ + P + ++++++ ++ +YY+ + I+PP+ER + G
Sbjct: 832 -FVDRAEDP-DYVRENNVPIDVDYYVKKQILPPVERILEVFG 871
>MGI|MGI:99660 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0000166 "nucleotide binding" evidence=ISO]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO;IMP;IDA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISO] [GO:0006270 "DNA replication
initiation" evidence=ISO] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISO] [GO:0006272 "leading
strand elongation" evidence=ISO] [GO:0006273 "lagging strand
elongation" evidence=ISO] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISO;IBA] [GO:0008283 "cell
proliferation" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017076 "purine
nucleotide binding" evidence=ISO] [GO:0019103 "pyrimidine
nucleotide binding" evidence=ISO] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
MGI:MGI:99660 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008283 GO:GO:0000785 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0003690 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0008408 GO:GO:0017076
GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 CTD:5422
HOVERGEN:HBG080008 GO:GO:0019103 EMBL:D13543 EMBL:D17384
IPI:IPI00114051 PIR:S45628 RefSeq:NP_032918.1 UniGene:Mm.1923
ProteinModelPortal:P33609 SMR:P33609 IntAct:P33609 STRING:P33609
PhosphoSite:P33609 PaxDb:P33609 PRIDE:P33609
Ensembl:ENSMUST00000006856 GeneID:18968 KEGG:mmu:18968
InParanoid:P33609 OrthoDB:EOG43XV2M BindingDB:P33609
ChEMBL:CHEMBL2797 NextBio:295308 Bgee:P33609 CleanEx:MM_POLA1
Genevestigator:P33609 GermOnline:ENSMUSG00000006678 Uniprot:P33609
Length = 1465
Score = 273 (101.2 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 80/326 (24%), Positives = 145/326 (44%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D ++ GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG
Sbjct: 907 DPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGF 966
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L + T + K V+YGDTDS+ + +E
Sbjct: 967 SYS-RFYAKPLAALVTYKGREIL---MHTKDMVQKMNLEVIYGDTDSIMINTNSTNLEEV 1022
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI--YEAKGI 920
F++G ++ ++ + V++ +L KK+Y + E I E KG+
Sbjct: 1023 FKLGNKVKSEVNKLYKLL-EIDIDAVFKSLLLLKKKKYAALVVEPTSDGNYITKQELKGL 1081
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ VRRD C + + + + E ++K+ +I ++G + V K
Sbjct: 1082 DIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINK 1141
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI L + +P
Sbjct: 1142 ALTKDPQDYPDRKSLPHVHVAL-WINSQGGRKVKAGDTVSYVICQDGSNLTATQRAYAPE 1200
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
+L + +L ++++YY+ + I P + R
Sbjct: 1201 QLQKLDNLAIDTQYYLAQQIHPVVAR 1226
Score = 106 (42.4 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 42/218 (19%), Positives = 92/218 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
+ K +++ + E+ L F+ V + DPDIL+G+ I + LL+R + +
Sbjct: 606 ISKKNMKVEIAATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQRINECKVPYWSK 665
Query: 500 LSRITEVEK-RNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ER 557
+ R+ + SR GR++ ++ + ++ +SY ++ +L ER
Sbjct: 666 IGRLRRSNMPKLGSRSGFGERNATC-GRMICDVEISAKELIHCKSYHLSELVQQILKTER 724
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
I + + + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 725 IVIPTENIRNMYSESSYLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMS 781
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 655
L G R E ++L NN++ I ++ +
Sbjct: 782 RTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 819
Score = 99 (39.9 bits), Expect = 1.1e-29, Sum P(3) = 1.1e-29
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 847 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 882
>UNIPROTKB|F6Y1C9 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSCAFT00000021463 EMBL:AAEX03026211 Uniprot:F6Y1C9
Length = 1467
Score = 269 (99.8 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 81/326 (24%), Positives = 147/326 (45%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D + GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG
Sbjct: 909 DPGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGF 968
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L E V K V+YGDTDS+ + +E
Sbjct: 969 SYS-RFYAKPLAALVTYKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNSTDLEEV 1024
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYE-TADQDKPI-YEAKGI 920
+++G ++ ++ + V++ +L KK+Y + E T+D + E KG+
Sbjct: 1025 YKLGNKVKSEVNKLYKLL-EIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGL 1083
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ VRRD C + + + + + E ++K+ +I ++G + V K
Sbjct: 1084 DIVRRDWCDLAKETGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINK 1143
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI L + +P
Sbjct: 1144 ALTKDPQDYPDKKSLPHVHVAL-WMNSQGGRKMKAGDTVSYVICQDGSNLTASQRAYAPE 1202
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
+L + +L ++++YY+ + I P + R
Sbjct: 1203 QLQKQDNLTIDTQYYLAQQIHPVVAR 1228
Score = 104 (41.7 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 39/217 (17%), Positives = 89/217 (41%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
++ K +++ + E+ L F+ V + DPDI++G+ I LL+R V + +
Sbjct: 608 IKEKNVKVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPHWSK 667
Query: 500 LSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERI 558
+ R+ + GR++ ++ + + +SY ++ +L ER+
Sbjct: 668 IGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILRTERV 727
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
+ + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 728 VIPMENVRNMYSESSHLLY---LLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 784
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 655
L G R E ++L NN++ I ++ +
Sbjct: 785 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 821
Score = 102 (41.0 bits), Expect = 2.4e-29, Sum P(3) = 2.4e-29
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+L+P++ Y I++LDF SLYPS+I +N CF+T
Sbjct: 849 LVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTT 884
>ZFIN|ZDB-GENE-030114-9 [details] [associations]
symbol:pola1 "polymerase (DNA directed), alpha 1"
species:7955 "Danio rerio" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IBA] [GO:0006260 "DNA replication"
evidence=IEA;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IBA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
ZFIN:ZDB-GENE-030114-9 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:BX470095 IPI:IPI00898449
Ensembl:ENSDART00000128595 ArrayExpress:E7FB68 Bgee:E7FB68
Uniprot:E7FB68
Length = 1468
Score = 279 (103.3 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
Identities = 84/326 (25%), Positives = 144/326 (44%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D+S+ GILPK ++++++ R VKQ MKE N L RQ LKL AN YG
Sbjct: 910 DQSLEMGILPKEIRKLVERRRQVKQLMKEPDLNPDLYLQYDIRQKALKLTANSMYGCLGF 969
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
+FS R + V KGRE L E V + V+YGDTDS+ + +E
Sbjct: 970 SFS-RFYAKPLAALVTHKGREILMHTKEMVQ---RMNLEVIYGDTDSIMINTNSTNLEEV 1025
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI--YEAKGI 920
F++G ++ ++ + V++ +L KK+Y M E K E KG+
Sbjct: 1026 FKLGNKVKSEVNKLYKLL-EIDIDGVFKSLLLLKKKKYAALMVEPQGDGKYTTKQELKGL 1084
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQF----SKIISGRISVQDMTFAK 976
+ VRRD C + + + ++ + E ++K K+ +G I + K
Sbjct: 1085 DIVRRDWCDLAKECGNYVIGQILSDQNRDTIIENIQKHLIEIGEKVANGNIPLNMFEIHK 1144
Query: 977 EYRGQA-GYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI L + +
Sbjct: 1145 SLTKEPQDYPDKKSLPHVHVAL-WINSQGGKKVKAGDTVSYVICQDGSNLAASQRAYTLE 1203
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
+L + L L+++YY+++ + P + R
Sbjct: 1204 QLQKQPGLNLDTQYYLSQQVHPVVGR 1229
Score = 99 (39.9 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 851 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 886
Score = 92 (37.4 bits), Expect = 7.2e-29, Sum P(3) = 7.2e-29
Identities = 38/214 (17%), Positives = 87/214 (40%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
VR K + E+ L F+ + + DPD+L+G++I LL+R V + +
Sbjct: 611 VRKKNGIVEIAGTERALLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQRINVCKVPHWSK 670
Query: 500 LSRITEVEK-RNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 558
+ R+ + R GR+V ++ + + +SY ++ +L
Sbjct: 671 IGRLRRANMPKLGGRSGFAEKSATC-GRLVCDIEISAKELIRCKSYNLTELVSQILKAER 729
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
P+ + + ++ THL + + ++ I++++ +L+ + ++ + G
Sbjct: 730 PVVPPENIRNFYSDSTHLLYLLELTWMDAKL--ILQIMCELNVLPLALQITNIAGNVMSR 787
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRA 652
L G R E ++L +F+ ++A
Sbjct: 788 TLMGGRSERNEYLLLHAFHERDFIVPDKQFFKKA 821
>UNIPROTKB|P09884 [details] [associations]
symbol:POLA1 "DNA polymerase alpha catalytic subunit"
species:9606 "Homo sapiens" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IDA;TAS] [GO:0000166 "nucleotide binding"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0006272
"leading strand elongation" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;NAS] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=IMP;TAS] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IDA;TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000083
"regulation of transcription involved in G1/S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
DrugBank:DB01073 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000216
GO:GO:0000084 GO:GO:0008408 GO:GO:0017076 GO:GO:0006303
GO:GO:0000722 GO:GO:0000083 Reactome:REACT_383 GO:GO:0003887
KO:K02320 DrugBank:DB00631 GO:GO:0032201 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:X06745 EMBL:AY275833 EMBL:M64481
IPI:IPI00220317 PIR:S00257 RefSeq:NP_058633.2 UniGene:Hs.567319
PDB:1K0P PDB:1K18 PDB:1N5G PDBsum:1K0P PDBsum:1K18 PDBsum:1N5G
ProteinModelPortal:P09884 SMR:P09884 IntAct:P09884
MINT:MINT-1517478 STRING:P09884 PhosphoSite:P09884 DMDM:60392197
PaxDb:P09884 PRIDE:P09884 Ensembl:ENST00000379059 GeneID:5422
KEGG:hsa:5422 UCSC:uc004dbl.3 CTD:5422 GeneCards:GC0XP024712
H-InvDB:HIX0028476 HGNC:HGNC:9173 HPA:CAB012274 HPA:HPA002947
MIM:312040 neXtProt:NX_P09884 PharmGKB:PA162399856
HOVERGEN:HBG080008 PhylomeDB:P09884 BindingDB:P09884
ChEMBL:CHEMBL1828 ChiTaRS:POLA1 EvolutionaryTrace:P09884
GenomeRNAi:5422 NextBio:20977 ArrayExpress:P09884 Bgee:P09884
CleanEx:HS_POLA1 Genevestigator:P09884 GO:GO:0019103 Uniprot:P09884
Length = 1462
Score = 278 (102.9 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 83/326 (25%), Positives = 147/326 (45%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D S+ GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG
Sbjct: 903 DPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGF 962
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L E V K V+YGDTDS+ + +E
Sbjct: 963 SYS-RFYAKPLAALVTYKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNSTNLEEV 1018
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYE-TADQDKPI-YEAKGI 920
F++G ++ ++ + V++ +L KK+Y + E T+D + E KG+
Sbjct: 1019 FKLGNKVKSEVNKLYKLL-EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGL 1077
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ VRRD C + + + + E ++K+ +I ++G + V K
Sbjct: 1078 DIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINK 1137
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI L + +P
Sbjct: 1138 ALTKDPQDYPDKKSLPHVHVAL-WINSQGGRKVKAGDTVSYVICQDGSNLTASQRAYAPE 1196
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
+L + +L ++++YY+ + I P + R
Sbjct: 1197 QLQKQDNLTIDTQYYLAQQIHPVVAR 1222
Score = 101 (40.6 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 40/220 (18%), Positives = 94/220 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
+ K +++ + E+ L F+ V + DPDI++G+ I LL+R + +
Sbjct: 602 IEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR---INVCKAPH 658
Query: 500 LSRITEVEKRNSSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH- 555
S+I +++ N + ++ + GR++ ++ + + +SY ++ +L
Sbjct: 659 WSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKT 718
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQ 615
ER+ + + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 719 ERVVIPMENIQNMYSESSQLLY---LLEHTWKDAKFILQIMCELNVLPLALQITNIAGNI 775
Query: 616 FYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 655
L G R E ++L NN++ I ++ +
Sbjct: 776 MSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 815
Score = 99 (39.9 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 843 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 878
Score = 39 (18.8 bits), Expect = 7.3e-29, Sum P(4) = 7.3e-29
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1080 KLHVYLPSVLNE-RKKKSTISQYFA 1103
K + P VL + RK K+T Q+ +
Sbjct: 1418 KKQFFTPKVLQDYRKLKNTAEQFLS 1442
>UNIPROTKB|A6NMQ1 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 HOGENOM:HOG000163524 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 HGNC:HGNC:9173
HOVERGEN:HBG080008 ChiTaRS:POLA1 OrthoDB:EOG43XV2M EMBL:AC002504
EMBL:AC004655 EMBL:AC079375 EMBL:AC135280 IPI:IPI00647655
ProteinModelPortal:A6NMQ1 SMR:A6NMQ1 STRING:A6NMQ1 PRIDE:A6NMQ1
Ensembl:ENST00000379068 ArrayExpress:A6NMQ1 Bgee:A6NMQ1
Uniprot:A6NMQ1
Length = 1468
Score = 278 (102.9 bits), Expect = 7.4e-29, Sum P(4) = 7.4e-29
Identities = 83/326 (25%), Positives = 147/326 (45%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D S+ GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG
Sbjct: 909 DPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLILQYDIRQKALKLTANSMYGCLGF 968
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L E V K V+YGDTDS+ + +E
Sbjct: 969 SYS-RFYAKPLAALVTYKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNSTNLEEV 1024
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYE-TADQDKPI-YEAKGI 920
F++G ++ ++ + V++ +L KK+Y + E T+D + E KG+
Sbjct: 1025 FKLGNKVKSEVNKLYKLL-EIDIDGVFKSLLLLKKKKYAALVVEPTSDGNYVTKQELKGL 1083
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ VRRD C + + + + E ++K+ +I ++G + V K
Sbjct: 1084 DIVRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINK 1143
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI L + +P
Sbjct: 1144 ALTKDPQDYPDKKSLPHVHVAL-WINSQGGRKVKAGDTVSYVICQDGSNLTASQRAYAPE 1202
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
+L + +L ++++YY+ + I P + R
Sbjct: 1203 QLQKQDNLTIDTQYYLAQQIHPVVAR 1228
Score = 101 (40.6 bits), Expect = 7.4e-29, Sum P(4) = 7.4e-29
Identities = 40/220 (18%), Positives = 94/220 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
+ K +++ + E+ L F+ V + DPDI++G+ I LL+R + +
Sbjct: 608 IEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR---INVCKAPH 664
Query: 500 LSRITEVEKRNSSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH- 555
S+I +++ N + ++ + GR++ ++ + + +SY ++ +L
Sbjct: 665 WSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKT 724
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQ 615
ER+ + + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 725 ERVVIPMENIQNMYSESSQLLY---LLEHTWKDAKFILQIMCELNVLPLALQITNIAGNI 781
Query: 616 FYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 655
L G R E ++L NN++ I ++ +
Sbjct: 782 MSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 821
Score = 99 (39.9 bits), Expect = 7.4e-29, Sum P(4) = 7.4e-29
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 849 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 884
Score = 39 (18.8 bits), Expect = 7.4e-29, Sum P(4) = 7.4e-29
Identities = 9/25 (36%), Positives = 14/25 (56%)
Query: 1080 KLHVYLPSVLNE-RKKKSTISQYFA 1103
K + P VL + RK K+T Q+ +
Sbjct: 1424 KKQFFTPKVLQDYRKLKNTAEQFLS 1448
>UNIPROTKB|E2QVU2 [details] [associations]
symbol:POLA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 Ensembl:ENSCAFT00000021463 Uniprot:E2QVU2
Length = 1357
Score = 269 (99.8 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 81/326 (24%), Positives = 147/326 (45%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D + GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG
Sbjct: 910 DPGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDLVLQYDIRQKALKLTANSMYGCLGF 969
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L E V K V+YGDTDS+ + +E
Sbjct: 970 SYS-RFYAKPLAALVTYKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNSTDLEEV 1025
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYE-TADQDKPI-YEAKGI 920
+++G ++ ++ + V++ +L KK+Y + E T+D + E KG+
Sbjct: 1026 YKLGNKVKSEVNKLYKLL-EIDIDGVFKSLLLLKKKKYGALVVEPTSDGNYSTKQELKGL 1084
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ VRRD C + + + + + E ++K+ +I ++G + V K
Sbjct: 1085 DIVRRDWCDLAKETGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINK 1144
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
+ Y +P + +A W+ + + + + V YVI L + +P
Sbjct: 1145 ALTKDPQDYPDKKSLPHVHVAL-WMNSQGGRKMKAGDTVSYVICQDGSNLTASQRAYAPE 1203
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
+L + +L ++++YY+ + I P + R
Sbjct: 1204 QLQKQDNLTIDTQYYLAQQIHPVVAR 1229
Score = 104 (41.7 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 39/217 (17%), Positives = 89/217 (41%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
++ K +++ + E+ L F+ V + DPDI++G+ I LL+R V + +
Sbjct: 608 IKEKNVKVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPHWSK 667
Query: 500 LSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERI 558
+ R+ + GR++ ++ + + +SY ++ +L ER+
Sbjct: 668 IGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILRTERV 727
Query: 559 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 618
+ + + E LY +EH I++++ +L+ + ++ + G
Sbjct: 728 VIPMENVRNMYSESSHLLY---LLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSR 784
Query: 619 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 655
L G R E ++L NN++ I ++ +
Sbjct: 785 TLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 821
Score = 95 (38.5 bits), Expect = 9.3e-29, Sum P(3) = 9.3e-29
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 662 LILEPESRLYTDP-IIVLDFQSLYPSVIIAYNYCFST 697
L+L+P++ + D I++LDF SLYPS+I +N CF+T
Sbjct: 849 LVLDPKAAGFYDKFILLLDFNSLYPSIIQEFNICFTT 885
>UNIPROTKB|Q9DE46 [details] [associations]
symbol:pola1 "DNA polymerase alpha catalytic subunit"
species:8355 "Xenopus laevis" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363
GO:GO:0000084 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
CTD:5422 HOVERGEN:HBG080008 EMBL:AF202992 RefSeq:NP_001082055.1
UniGene:Xl.7596 ProteinModelPortal:Q9DE46 SMR:Q9DE46
MINT:MINT-7386218 GeneID:398200 KEGG:xla:398200
Xenbase:XB-GENE-1000552 Uniprot:Q9DE46
Length = 1458
Score = 251 (93.4 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 73/323 (22%), Positives = 142/323 (43%)
Query: 746 IRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFS 805
+ GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG ++S
Sbjct: 902 LEMGILPREIRKLVERRRHVKQLMKQPDLNPDLYLQYDIRQKALKLTANSMYGCLGFSYS 961
Query: 806 GRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEI 865
R + V +GRE L + T K V+YGDTDS+ + +E F++
Sbjct: 962 -RFYAKPLAALVTHQGREIL---LHTKEMVQKMNLEVIYGDTDSIMINTNCNNLEEVFKL 1017
Query: 866 GKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI--YEAKGIETV 923
G + ++ + +++ +L KK+Y E K + E KG++ V
Sbjct: 1018 GNRVKSEINKSYKLL-EIDIDGIFKSLLLLKKKKYAALTVEPTGDGKYVTKQELKGLDIV 1076
Query: 924 RRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAKEY- 978
RRD C + + + + + E ++K+ ++I +G + + K
Sbjct: 1077 RRDWCELAKQAGNYVISQILSDQPRDSIVENIQKKLTEIGENVTNGTVPITQYEINKALT 1136
Query: 979 RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELL 1038
+ Y +P + +A W+ + + + + + YVI L + + +L
Sbjct: 1137 KDPQDYPDKKSLPHVHVAL-WINSQGGRKVKAGDTISYVICQDGSNLSASQRAYAQEQLQ 1195
Query: 1039 QDSSLRLNSEYYITRVIIPPLER 1061
+ +L ++++YY+++ + P + R
Sbjct: 1196 KQENLSIDTQYYLSQQVHPVVAR 1218
Score = 111 (44.1 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 649 KQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
K ++ +A + L+LEP+ Y I++LDF SLYPS+I YN CF+T
Sbjct: 829 KNKSRKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTT 877
Score = 106 (42.4 bits), Expect = 1.4e-28, Sum P(3) = 1.4e-28
Identities = 40/205 (19%), Positives = 87/205 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
V+ K + E+ L F+ + + DPD+++G++I LL+R + +
Sbjct: 602 VKQKNANIEIALTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVPFWSK 661
Query: 500 LSRITE-VEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ER 557
+ R+ V + R GRI+ ++ + + +SY +++ +L ER
Sbjct: 662 IGRLRRSVMPKLGGRSGFAERNAAC-GRIICDIEISAKELIRCKSYHLSELVHQILKAER 720
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
+ + + + HL +M +E+ I I++++ +L+ + ++ + G
Sbjct: 721 VVIPPENIRNAY-NDSVHLL-YM-LENTWIDAKFILQIMCELNVLPLALQITNIAGNVMS 777
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFV 642
L G R E ++L NNF+
Sbjct: 778 RTLMGGRSERNEYLLLHAFTENNFI 802
Score = 37 (18.1 bits), Expect = 1.9e-21, Sum P(3) = 1.9e-21
Identities = 9/19 (47%), Positives = 11/19 (57%)
Query: 193 HIFPKSNFIKPIAKPPTSK 211
H F ++NFI P KP K
Sbjct: 794 HAFTENNFIVP-DKPVFKK 811
>UNIPROTKB|E1BJF4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9913 "Bos taurus"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006273
"lagging strand elongation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:DAAA02074352 IPI:IPI00717665
Ensembl:ENSBTAT00000010742 Uniprot:E1BJF4
Length = 1351
Score = 240 (89.5 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 80/330 (24%), Positives = 148/330 (44%)
Query: 743 DKSIRCGILPKMLQEILDTR--LMVKQSMKEY--KSNAALQRVLHARQLGLKLIANVTYG 798
D S+ GILP+ ++++++ R + K M + S LQ + RQ LKL AN YG
Sbjct: 909 DPSLEMGILPREIRKLVERRRETIQKHLMPQICLLSLCGLQYDI--RQKALKLTANSMYG 966
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
++S R + V KGRE L E V K V+YGDTDS+ +
Sbjct: 967 CLGFSYS-RFYAKPLAALVTYKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNSTN 1022
Query: 859 KQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYE-TADQDKPI-YE 916
+E F++G ++ ++ + +++ +L KK+Y + E T+D + E
Sbjct: 1023 LEEVFKLGNKVKSEVNKLYKLL-EIDIDGIFKSLLLLKKKKYAALIVEPTSDGNYVTKQE 1081
Query: 917 AKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDM 972
KG++ VRRD C + + ++ + E ++K+ +I ++G + V
Sbjct: 1082 VKGLDIVRRDWCDLAKDTGNFVIGQILSDQNRDTIVENIQKRLIEIGENVLNGSVPVSQF 1141
Query: 973 TFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLV 1031
K + Y +P + +A W+ + + + + V YVI L +
Sbjct: 1142 EINKALTKDPQDYPDKKSLPHVHVAL-WINSQGGRKVKAGDTVSYVICQDGSNLTAGQRA 1200
Query: 1032 KSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
+P +L + +L ++++YY+ + I P + R
Sbjct: 1201 YAPEQLQKQDNLSIDTQYYLAQQIHPVVAR 1230
Score = 102 (41.0 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 650 QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
++ +A S L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 837 KKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 884
Score = 102 (41.0 bits), Expect = 3.6e-26, Sum P(3) = 3.6e-26
Identities = 42/207 (20%), Positives = 91/207 (43%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
++ K +++ + E+ L F+ V + DPDI++G+ I LL+R V + +
Sbjct: 608 IKEKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPFWSK 667
Query: 500 LSRI--TEVEKRNS-SRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH- 555
+ R+ + + K S KN GR++ ++ + + +SY ++ +L
Sbjct: 668 IGRLKRSNMPKLGGRSGFGEKNATC---GRMICDVEISAKELIRCKSYHLSELVQQILKT 724
Query: 556 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQ 615
ERI + + + + +HL +EH I++++ +L+ + ++ + G
Sbjct: 725 ERIVIPI-ETIRNMYSDSSHLL--YLLEHTWKDARFILQIMCELNVLPLALQITNIAGNI 781
Query: 616 FYEVLSRGSQFRVESIMLRLSRLNNFV 642
L G R E ++L NN++
Sbjct: 782 MSRTLMGGRSERNEFLLLHAFYENNYI 808
>UNIPROTKB|Q7SBT9 [details] [associations]
symbol:NCU07870 "DNA polymerase" species:367110 "Neurospora
crassa OR74A" [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
EMBL:AABX02000040 RefSeq:XP_963131.2 STRING:Q7SBT9
EnsemblFungi:EFNCRT00000007540 GeneID:3879279 KEGG:ncr:NCU07870
Uniprot:Q7SBT9
Length = 1479
Score = 268 (99.4 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 100/373 (26%), Positives = 162/373 (43%)
Query: 732 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKL 791
L+ V V K GILPK++ ++ R VK MK+ + +QL LKL
Sbjct: 895 LSEDDDAVPEVPKEQAQGILPKLIATLVSRRRQVKSLMKDKNATPEELATWDIKQLALKL 954
Query: 792 IANVTYG---YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTD 848
AN YG YT + F R P + KGRE L+ E + S +V+YGDTD
Sbjct: 955 TANSMYGCLGYTKSRFYAR-PLAVL---TTYKGREILRSTKELAESNS---LQVIYGDTD 1007
Query: 849 SMFVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGY-MYET 907
S+ + A EA +G E ++ + V++ +LQ KK+Y M E
Sbjct: 1008 SVMINANKDNVAEALRVGHEFKKAVNERYRLL-EIDIDNVFRRILLQAKKKYAAINMVEV 1066
Query: 908 ADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSV----VKEYVEKQFSKII 963
+ E KG++ RR+ C +I + L + D V + EY+ +K+
Sbjct: 1067 NGKWVEKMEVKGLDMKRREYCGLSKEISNRILTEILSGDDTEVSVQRIHEYLRDISAKMR 1126
Query: 964 SGRISVQDMTFAKEYRGQA--GYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIV-- 1019
G + VQ + + G+A Y +P + +A + + R + + Y+I
Sbjct: 1127 EGAVPVQKYIISTQL-GKAPKDYPNADSMPQVQVALRELAKGKTI--RKGDVISYIITGD 1183
Query: 1020 SGAPGLPLIKLVKSPYELLQ-DSSLRLNSEYYITRVIIPPLER-CFLLLGTPVLPWYKNL 1077
S + K +P ++L+ +S L + E+YI + I PP+ER C ++GT +NL
Sbjct: 1184 SKTTSEAVAKRAYTPQDVLKAESGLSPDVEWYIGKQIFPPVERLCANIVGTSTSQLAENL 1243
Query: 1078 PRKLHVYLPSVLN 1090
+ Y + N
Sbjct: 1244 GLDVRRYSSNTNN 1256
Score = 112 (44.5 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+ EPE LY ++V+DF SLYPS+I YN CF+T
Sbjct: 854 LVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTT 889
Score = 70 (29.7 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 431 IGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER 488
IG E+ L + R + + F E E+ + + + DPD+++G+++E + + LL R
Sbjct: 602 IGFET-LAKERNRGVLKLF-KQEHEILNFLLAQIDVVDPDVILGHQLEGVDYSILLNR 657
Score = 37 (18.1 bits), Expect = 1.0e-25, Sum P(4) = 1.0e-25
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 1149 VNKVCTTCVGRSTS 1162
V ++C VG STS
Sbjct: 1224 VERLCANIVGTSTS 1237
>CGD|CAL0002431 [details] [associations]
symbol:POL1 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006279 "premeiotic DNA replication"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
CGD:CAL0002431 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 RefSeq:XP_722942.1 RefSeq:XP_723089.1
STRING:Q5ANM8 GeneID:3635144 GeneID:3635340 KEGG:cal:CaO19.13294
KEGG:cal:CaO19.5873 Uniprot:Q5ANM8
Length = 1470
Score = 234 (87.4 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 81/333 (24%), Positives = 147/333 (44%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLH-ARQLGLKLIANVTYGYTA 801
++ G+LP++L ++ R VK+ +K+ K N Q+ + +Q LKL AN YG
Sbjct: 899 ERDTESGVLPRLLNTLVSRRREVKKLLKDPK-NTPFQKAQYDIKQQALKLTANSMYG-CL 956
Query: 802 ANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQE 861
+ R + V +KGRE L + ++S RVVYGDTDS+ + + QE
Sbjct: 957 GYVNSRFYAKPLAMLVTNKGREILMDTRQLAESSS---LRVVYGDTDSVMIDTGASSYQE 1013
Query: 862 AFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGY---MYETADQDKPIYEAK 918
A +IG++ ++ + V++ +L KK+Y + + +++ E K
Sbjct: 1014 AIKIGEQFKVQVNERYRLL-EIDIDNVFKRLLLHAKKKYAAMNASINKATNEETATLEVK 1072
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKD----LSVVKEYVEKQFSKIISGRISVQDMTF 974
G++ RR+ C I L + D L V +Y++ KI + I +
Sbjct: 1073 GLDMRRREYCQLSKDISTFVLTKILSDSDPETALLEVYDYLDDMKGKIQNNEIPIDKYKI 1132
Query: 975 -AKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSG---APGLPLIKL 1030
K + Y G +P + +A + L + + + YVI + + +
Sbjct: 1133 NTKLSKDPKSYPNGKSMPQVQVALR--LREEGKVIKAGSVITYVITAAKDDGDNSTVAER 1190
Query: 1031 VKSPYELL--QDSSLRLNSEYYITRVIIPPLER 1061
++ ELL +D L+ ++ YY+ + I P+ER
Sbjct: 1191 ARAIQELLSKKDPDLKPDANYYLEKQIFAPVER 1223
Score = 106 (42.4 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+ EPE L+ + ++V+DF SLYPS+I +N CF+T
Sbjct: 843 LVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTT 878
Score = 101 (40.6 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 71/351 (20%), Positives = 148/351 (42%)
Query: 329 NPDLFKSFI-RKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENY----Y 383
N ++F+SFI ++ + P DAM + ++ +D +++++ ++
Sbjct: 466 NANMFESFIMQRNIMGPCWLEIRGGDFDAMQNASHCQVEVVVDRPSQISTIDKDAPSSPN 525
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYL-YTCPPEEDRKVGIIL-----IGQES-- 435
LTV A+ + + A A ++ L P ED K + +G S
Sbjct: 526 LTVTAISMQTMLNAKTNKQEVVSVSLATYFDLPQDAPISEDIKPDDVFTLARPVGSVSFP 585
Query: 436 -ELPEVRTKP-IQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER----G 489
L ++ K Q+ +EK L + ++ DPD+ IG+ +E +S L+ R
Sbjct: 586 PRLQQLAEKGGFQLRTCPSEKVLLNALAAKIKSLDPDVFIGHRLENISLDVLVHRMNDNN 645
Query: 490 YVLGLNLNQELSRITE--VEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFE 547
V L + R + K NSS + + GR++ ++ + + ++ +++
Sbjct: 646 VVTWSALGRRNRRQWPYMINKSNSSYNNSLLIRDVFQGRLLCDIANEMGQSLTMKCQSWD 705
Query: 548 -NIMYHVL-HER-IPLH-SWKLLTCWWEHRTHLYKWMTVEHYL-IRVTGIIRLIEQLDFI 602
+ MY V+ H++ P+ +++ L + HL+ E+ L ++ T I Q+ +
Sbjct: 706 LHEMYDVVCHKKHSPVEINYQNLK--YAEDAHLFLMALKENELNVKQTAEIAFATQI--L 761
Query: 603 GRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAH 653
+ ++ + G + LS R E I+L + NN++ P + + H
Sbjct: 762 SLSKQLTNIAGNAWSHTLSGTRAGRNEYILLHEFKRNNYIV--PDKEDKTH 810
Score = 44 (20.5 bits), Expect = 7.9e-20, Sum P(3) = 7.9e-20
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 193 HIFPKSNFIKPIAKPPTSKSVTRWLE-RKEAFKRNAGTRSS 232
H F ++N+I P + T K+ + E R E + +A T +S
Sbjct: 793 HEFKRNNYIVPDKEDKTHKNTSYQQEARVENAEEDATTATS 833
>DICTYBASE|DDB_G0282191 [details] [associations]
symbol:polA1 "DNA polymerase alpha catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA;IBA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0003896 "DNA
primase activity" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS;IBA] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=ISS] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0005634 "nucleus"
evidence=IEA;IBA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0282191 GO:GO:0000166
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AAFI02000046
GO:GO:0008408 GO:GO:0006303 GO:GO:0000731 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 OMA:CASIQGT RefSeq:XP_640277.1
ProteinModelPortal:Q54SV8 STRING:Q54SV8 EnsemblProtists:DDB0232274
GeneID:8623451 KEGG:ddi:DDB_G0282191 Uniprot:Q54SV8
Length = 1509
Score = 269 (99.8 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 93/329 (28%), Positives = 153/329 (46%)
Query: 745 SIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANF 804
SI GILPK+L ++ R +K+ M++ K N ++ +Q +KLIAN YG +
Sbjct: 948 SIEKGILPKVLHGLVSKRREIKKRMEQEK-NKIIKAQYDIQQQAVKLIANSMYGCLGFSH 1006
Query: 805 SGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFE 864
S R + + + V KGRE LQK VN K V+YGDTDS+ + T EA
Sbjct: 1007 S-RFYALPLAELVTRKGRENLQKGASIVN---KMCYDVIYGDTDSLMIYTGVGTFNEAET 1062
Query: 865 IGKEIAXXXXXXXXXXX-KLKFEKVYQPCILQTKKRYVGYMYETADQD--KPIYEAKGIE 921
IGKEI ++ + +++ +L KK+Y D K E KGI+
Sbjct: 1063 IGKEIQKKINDQYRGSVMEIGLDGIFKRLLLFKKKKYACLKEFRIDSTTTKCERENKGID 1122
Query: 922 TVRRDGCPAVSKILKKSLCLLFETKD----LSVVKEYVEKQFSKIISGRISVQDMTFAKE 977
VRRD C I + L L+ ++ S++KEY+E +I ++V+ K
Sbjct: 1123 IVRRDYCDLTKDIGQWVLNLILGGEEKIALFSLIKEYLESVQQQIKDNTLAVEKFIITKT 1182
Query: 978 YRGQAG-YKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIK----LVK 1032
Q Y P + +A Q +P E+VPY+I G + + +
Sbjct: 1183 LSKQPEEYNDADIQPHVQVALQMRAKGLHVQP--GEQVPYIITHGNSSSDIKEEWHHRAR 1240
Query: 1033 SPYELLQDSSLRLNSEYYITRVIIPPLER 1061
+P ++ +S ++ ++Y+++ I+P ++R
Sbjct: 1241 APSDV--ESIQDVDIDWYLSQQILPSIQR 1267
Score = 132 (51.5 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 64/279 (22%), Positives = 123/279 (44%)
Query: 438 PEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLN 497
P T + ++E+ L S F E V DPD+ G+ I +L+R L +
Sbjct: 668 PGASTTKQNVTICTSERNLLSFFCETVLNADPDVFAGHNIIGYDIEVILDRLEKLKV--- 724
Query: 498 QELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQ-SYTFENIMYHVLHE 556
E + I +++ SS D + + GR++ + + + + + + +Y+ + + L
Sbjct: 725 MEWAFIGRLKR--SSFDRFNH----ISGRLICDSYLVCKEFLPKEKNYSLVELSKNQLSI 778
Query: 557 RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 616
P ++ + ++E L ++ + + I LI +L T ++ L G Q+
Sbjct: 779 NKPEINYLSIEPYFETTKKLNIFIEINENDCYI--IFLLIFKLLVFPLTKQLTNLAGNQW 836
Query: 617 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHM------------RAPESLPLIL 664
+ L R+E ++L ++ + I Q++ A S L+L
Sbjct: 837 DKSLKSNRAERIEYLLLHNFHEKKYL-LPDKIYQKSSSSGGGGGAKDKDNHAAYSGGLVL 895
Query: 665 EPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVE 703
+P+ Y +++LDF SLYPS+I YN CF+T + RV+
Sbjct: 896 DPKIDFYDRYVVLLDFNSLYPSIIQEYNVCFTT-INRVK 933
Score = 39 (18.8 bits), Expect = 1.1e-25, Sum P(3) = 1.1e-25
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 28 LPEANKMEGRAEN---EHMISSSESYLFTQNKSYDSPTIVAKQTLLPLSGEL 76
+PE N++ N S++ES+ F + K +S T+ + + L S EL
Sbjct: 163 VPEKNRIIQFINNPTESKSTSNNESFFFDKLKKSNSNTLNSTNSTLN-SNEL 213
Score = 37 (18.1 bits), Expect = 6.4e-16, Sum P(3) = 6.4e-16
Identities = 8/21 (38%), Positives = 11/21 (52%)
Query: 115 INTDVTNILSQEPFYSNFKDI 135
IN N LS EP++ K +
Sbjct: 778 INKPEINYLSIEPYFETTKKL 798
>UNIPROTKB|F1NR19 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9031 "Gallus gallus"
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000785 "chromatin" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:AADN02011218 EMBL:AADN02011219
EMBL:AADN02011220 EMBL:AADN02011221 EMBL:AADN02011222
EMBL:AADN02011223 IPI:IPI00588123 Ensembl:ENSGALT00000026316
Uniprot:F1NR19
Length = 1462
Score = 320 (117.7 bits), Expect = 2.0e-24, P = 2.0e-24
Identities = 126/632 (19%), Positives = 259/632 (40%)
Query: 439 EVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQ 498
E++ K ++ + E+ L F+ + + DPD+++G+ I LL+R V +
Sbjct: 592 EIKKKNAKIEIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQRINVCKVPHWS 651
Query: 499 ELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ER 557
++ R+ + GR++ ++ + + +SY +++ +L ER
Sbjct: 652 KIGRLRRSNMPKLGGRGGFGERNAACGRMICDVEISAKELIRCKSYHLSELVHQILKTER 711
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
+ + ++ + + HL +M +E+ I++++ +L+ + ++ + G
Sbjct: 712 VTILPEEIRNLYSDS-PHLL-FM-LENTWTDAKFILQIMCELNVLPLALQITNISGNVMS 768
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSI-KQRAHMRAPESLPLILEPESRLYTDPII 676
+ G R E ++L +++ + K+ E + +S++
Sbjct: 769 RTMMGGRSERNEFLLLHAFYEKDYIVPDKQVFKKPLQKLVDEDEDFEDQNKSKIGKKKAA 828
Query: 677 VLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP 736
L P V + + + + F C + S + + ++
Sbjct: 829 YAGGLVLDPKVGFYDKFILLLDFNSL-YPSIIQEFNI-CFTTVQRLSSEAQKRAEVEEEE 886
Query: 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVT 796
D S+ GILPK ++++++ R VKQ MK+ N L RQ LKL AN
Sbjct: 887 EIPELPDPSLEMGILPKEIRKLVERRRQVKQLMKQPDLNPDLYLQYDIRQKALKLTANSM 946
Query: 797 YGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPG 856
YG ++S R + V KGRE L E V K V+YGDTDS+ +
Sbjct: 947 YGCLGFSYS-RFYAKPLAALVTHKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNS 1002
Query: 857 KTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI-- 914
E F++G +I ++ + V++ +L KK+Y E K +
Sbjct: 1003 TNLDEVFKLGNKIKSEVNKLYKLL-EIDIDGVFKSLLLLKKKKYAALTVEPTGDGKYVTK 1061
Query: 915 YEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQ 970
E KG++ VRRD C + + + + ++ E ++++ +I I+G+I V
Sbjct: 1062 QELKGLDIVRRDWCDLAKETGNYVIGQILSDQPRDIIVENIQRRLIEIGENVINGQIPVN 1121
Query: 971 DMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIK 1029
K + Y +P + +A W+ + + + + V Y+I L +
Sbjct: 1122 QFEINKALTKDPQDYPDKKSLPHVHVA-MWINSQGGRKVKAGDTVSYIICQDGSNLSASQ 1180
Query: 1030 LVKSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
+P +L + +L ++++YY+++ I P + R
Sbjct: 1181 RAYAPEQLQKQDNLTIDTQYYLSQQIHPVVAR 1212
>UNIPROTKB|Q59J89 [details] [associations]
symbol:Q59J89 "DNA polymerase" species:34903 "Trachemys
scripta" [GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178526 Uniprot:Q59J89
Length = 1441
Score = 327 (120.2 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 129/638 (20%), Positives = 272/638 (42%)
Query: 440 VRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 499
+++K + + E+ L F+ V + DPDI++G+ I LL+R V + +
Sbjct: 572 IKSKNSNVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFDLEVLLQRINVSKVPHWSK 631
Query: 500 LSRITE-VEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ER 557
+ R+ + + R GR++ ++ + + +SY +++ +L ER
Sbjct: 632 IGRLRRSIMPKLGGRGGFAERNAAC-GRMICDVEISAKELIRCKSYHLSELVHQILKTER 690
Query: 558 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 617
I + ++ + + +HL +M +E+ I++++ +L+ + ++ + G
Sbjct: 691 ITIPPEEIRNMYSDS-SHLL-YM-LENTWTDARFILQIMCELNVLPLALQITNISGNVMS 747
Query: 618 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR-APESLPLILEPESRL------ 670
+ G R E ++L +++ + ++ + E + + +S++
Sbjct: 748 RTMMGGRSERNEFLLLHAFYERDYIVPDKQVFKKPQQKLVDEDEGVEDQNKSKIGRKKAA 807
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 730
Y +++ Y + I+ ++ S ++ + + + R+ +Q+
Sbjct: 808 YAGGLVLDPKVGFYDTFILLLDFN-SLYPSIIQEFNICFT-TVQRESSDAQKRAEDGVQE 865
Query: 731 KLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLK 790
++ P D S+ GILPK ++++++ R VKQ MK+ N L RQ LK
Sbjct: 866 EIPELP------DPSLEMGILPKEIRKLVERRRQVKQLMKQPDLNPDLYLQYDIRQKALK 919
Query: 791 LIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSM 850
L AN YG ++S R + V KGRE L E V K V+YGDTDS+
Sbjct: 920 LTANSMYGCLGFSYS-RFYAKPLAALVTHKGREILMHTKEMVQ---KMNLEVIYGDTDSI 975
Query: 851 FVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQ 910
+ +E F++G +I ++ + V++ +L KK+Y E
Sbjct: 976 MINTNSTNLEEVFKLGNKIKSEVNKLYKLL-EIDIDGVFKSLLLLKKKKYAALTVEPTGD 1034
Query: 911 DKPI--YEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----IS 964
K + E KG++ VRRD C + + + + + E ++++ +I I+
Sbjct: 1035 GKYVTKQELKGLDIVRRDWCDLAKETGNYVIGQILSDQSRDTIVENIQRRLIEIGENVIN 1094
Query: 965 GRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAP 1023
GR+ + K + Y +P + +A W+ + + + + V YVI
Sbjct: 1095 GRVPISQFEINKALTKDPQDYPDKKSLPHVHVA-MWINSQEGRKVKAGDTVSYVICQDGS 1153
Query: 1024 GLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLER 1061
L + +P +L + +L ++++YY+++ I P + R
Sbjct: 1154 NLSASQRAYAPEQLQKQENLTVDTQYYLSQQIHPVVAR 1191
Score = 39 (18.8 bits), Expect = 1.8e-23, Sum P(2) = 1.8e-23
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 1076 NLPRKLHVYLPSVLNERKKKSTISQYFAS 1104
NL Y P L +++ + +QY+ S
Sbjct: 1154 NLSASQRAYAPEQLQKQENLTVDTQYYLS 1182
>UNIPROTKB|Q9NAH1 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 HSSP:Q56366
GeneID:176544 KEGG:cel:CELE_Y47D3A.29 CTD:176544
RefSeq:NP_001255109.1 ProteinModelPortal:Q9NAH1 SMR:Q9NAH1
IntAct:Q9NAH1 MINT:MINT-6669806 STRING:Q9NAH1
EnsemblMetazoa:Y47D3A.29a UCSC:Y47D3A.29 WormBase:Y47D3A.29a
InParanoid:Q9NAH1 NextBio:893018 ArrayExpress:Q9NAH1 Uniprot:Q9NAH1
Length = 1428
Score = 225 (84.3 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 88/326 (26%), Positives = 148/326 (45%)
Query: 749 GILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRM 808
G+LP+ ++++++ R VK MK + N A ++ + RQ+ LKL AN YG +S R
Sbjct: 877 GVLPREIRKLVECRRDVKSLMKSER-NEAKKKQMDIRQMALKLTANSMYGCLGFQYS-RF 934
Query: 809 PCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKE 868
+ V +KGRE L + + V K VVYGDTDS+ + A ++G E
Sbjct: 935 YAKPLAALVTAKGREILMHSKDLVE---KMGYSVVYGDTDSIMINTNSVDLVAAKKLGNE 991
Query: 869 IAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRD-- 926
I +L + V++ +L KK+Y D E KG++ VRRD
Sbjct: 992 IKKAVNKCHRLL-ELDLDGVFKRMLLLKKKKYAALTINP-DTKVEAKELKGLDIVRRDWS 1049
Query: 927 ------GCPAVSKILKKSLCLLFETKD--LSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
G V KIL SL T+D +S + + + + +K+ SG + ++ +K+
Sbjct: 1050 QLAKETGTAVVDKILDASL-----TRDEMVSSIDDLLREIRAKLDSGTVPLEMFQISKQL 1104
Query: 979 -RGQAGYKP--GACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
R Y C A++ Q + + R ++ V YVI P +
Sbjct: 1105 TRNPEQYADVKAQCHAAVA---QRLNKSGKFNLRHNDIVEYVICEDGTDNPATQRAYHRT 1161
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
E+ ++S+L+++ YY+ + I P + R
Sbjct: 1162 EMAENSALKIDLLYYLAQQIHPVVSR 1187
Score = 142 (55.0 bits), Expect = 2.6e-23, Sum P(2) = 2.6e-23
Identities = 63/269 (23%), Positives = 130/269 (48%)
Query: 450 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 509
V+NEK L ++F+ + + +PD+++G+++ + L+ R L L SRI+ + KR
Sbjct: 598 VANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKL---PNWSRISRL-KR 652
Query: 510 NSSRDEV---KNTQLQMP-GRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWK 564
+ + ++ K+ Q ++ GR++++ V +S+ + +L ER +++ +
Sbjct: 653 SINIGKIGHSKSGQWELTAGRMMLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANE 712
Query: 565 LLTCWWEHRT--HLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 622
+ + + + L W + L +R++ +L+ + +++++ G +
Sbjct: 713 IPQLYVDSKDLISLINWSWNDLLLS-----LRIVVRLNALPLYIQISQIVGGIASRTMMG 767
Query: 623 GSQFRVESIMLRLSRLNNFVAV-----SPSIKQRAHM---------RAPESLPLILEPES 668
G R E ++L + +A S S K++ +A S L+LEP+
Sbjct: 768 GRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKK 827
Query: 669 RLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
LY I++LDF SLYPS+I YN C++T
Sbjct: 828 GLYETLILLLDFNSLYPSIIQEYNICYTT 856
>WB|WBGene00012936 [details] [associations]
symbol:Y47D3A.29a species:6239 "Caenorhabditis elegans"
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0035046 "pronuclear migration" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0008340 GO:GO:0009792
GO:GO:0035046 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 EMBL:AL117202 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 225 (84.3 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 88/326 (26%), Positives = 148/326 (45%)
Query: 749 GILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRM 808
G+LP+ ++++++ R VK MK + N A ++ + RQ+ LKL AN YG +S R
Sbjct: 877 GVLPREIRKLVECRRDVKSLMKSER-NEAKKKQMDIRQMALKLTANSMYGCLGFQYS-RF 934
Query: 809 PCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKE 868
+ V +KGRE L + + V K VVYGDTDS+ + A ++G E
Sbjct: 935 YAKPLAALVTAKGREILMHSKDLVE---KMGYSVVYGDTDSIMINTNSVDLVAAKKLGNE 991
Query: 869 IAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRD-- 926
I +L + V++ +L KK+Y D E KG++ VRRD
Sbjct: 992 IKKAVNKCHRLL-ELDLDGVFKRMLLLKKKKYAALTINP-DTKVEAKELKGLDIVRRDWS 1049
Query: 927 ------GCPAVSKILKKSLCLLFETKD--LSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
G V KIL SL T+D +S + + + + +K+ SG + ++ +K+
Sbjct: 1050 QLAKETGTAVVDKILDASL-----TRDEMVSSIDDLLREIRAKLDSGTVPLEMFQISKQL 1104
Query: 979 -RGQAGYKP--GACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
R Y C A++ Q + + R ++ V YVI P +
Sbjct: 1105 TRNPEQYADVKAQCHAAVA---QRLNKSGKFNLRHNDIVEYVICEDGTDNPATQRAYHRT 1161
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
E+ ++S+L+++ YY+ + I P + R
Sbjct: 1162 EMAENSALKIDLLYYLAQQIHPVVSR 1187
Score = 142 (55.0 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 63/269 (23%), Positives = 130/269 (48%)
Query: 450 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 509
V+NEK L ++F+ + + +PD+++G+++ + L+ R L L SRI+ + KR
Sbjct: 598 VANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKL---PNWSRISRL-KR 652
Query: 510 NSSRDEV---KNTQLQMP-GRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWK 564
+ + ++ K+ Q ++ GR++++ V +S+ + +L ER +++ +
Sbjct: 653 SINIGKIGHSKSGQWELTAGRMMLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANE 712
Query: 565 LLTCWWEHRT--HLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 622
+ + + + L W + L +R++ +L+ + +++++ G +
Sbjct: 713 IPQLYVDSKDLISLINWSWNDLLLS-----LRIVVRLNALPLYIQISQIVGGIASRTMMG 767
Query: 623 GSQFRVESIMLRLSRLNNFVAV-----SPSIKQRAHM---------RAPESLPLILEPES 668
G R E ++L + +A S S K++ +A S L+LEP+
Sbjct: 768 GRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKK 827
Query: 669 RLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
LY I++LDF SLYPS+I YN C++T
Sbjct: 828 GLYETLILLLDFNSLYPSIIQEYNICYTT 856
>UNIPROTKB|C7IVS4 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 225 (84.3 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 88/326 (26%), Positives = 148/326 (45%)
Query: 749 GILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRM 808
G+LP+ ++++++ R VK MK + N A ++ + RQ+ LKL AN YG +S R
Sbjct: 877 GVLPREIRKLVECRRDVKSLMKSER-NEAKKKQMDIRQMALKLTANSMYGCLGFQYS-RF 934
Query: 809 PCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKE 868
+ V +KGRE L + + V K VVYGDTDS+ + A ++G E
Sbjct: 935 YAKPLAALVTAKGREILMHSKDLVE---KMGYSVVYGDTDSIMINTNSVDLVAAKKLGNE 991
Query: 869 IAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRD-- 926
I +L + V++ +L KK+Y D E KG++ VRRD
Sbjct: 992 IKKAVNKCHRLL-ELDLDGVFKRMLLLKKKKYAALTINP-DTKVEAKELKGLDIVRRDWS 1049
Query: 927 ------GCPAVSKILKKSLCLLFETKD--LSVVKEYVEKQFSKIISGRISVQDMTFAKEY 978
G V KIL SL T+D +S + + + + +K+ SG + ++ +K+
Sbjct: 1050 QLAKETGTAVVDKILDASL-----TRDEMVSSIDDLLREIRAKLDSGTVPLEMFQISKQL 1104
Query: 979 -RGQAGYKP--GACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPY 1035
R Y C A++ Q + + R ++ V YVI P +
Sbjct: 1105 TRNPEQYADVKAQCHAAVA---QRLNKSGKFNLRHNDIVEYVICEDGTDNPATQRAYHRT 1161
Query: 1036 ELLQDSSLRLNSEYYITRVIIPPLER 1061
E+ ++S+L+++ YY+ + I P + R
Sbjct: 1162 EMAENSALKIDLLYYLAQQIHPVVSR 1187
Score = 142 (55.0 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 63/269 (23%), Positives = 130/269 (48%)
Query: 450 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 509
V+NEK L ++F+ + + +PD+++G+++ + L+ R L L SRI+ + KR
Sbjct: 598 VANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKL---PNWSRISRL-KR 652
Query: 510 NSSRDEV---KNTQLQMP-GRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWK 564
+ + ++ K+ Q ++ GR++++ V +S+ + +L ER +++ +
Sbjct: 653 SINIGKIGHSKSGQWELTAGRMMLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANE 712
Query: 565 LLTCWWEHRT--HLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 622
+ + + + L W + L +R++ +L+ + +++++ G +
Sbjct: 713 IPQLYVDSKDLISLINWSWNDLLLS-----LRIVVRLNALPLYIQISQIVGGIASRTMMG 767
Query: 623 GSQFRVESIMLRLSRLNNFVAV-----SPSIKQRAHM---------RAPESLPLILEPES 668
G R E ++L + +A S S K++ +A S L+LEP+
Sbjct: 768 GRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKK 827
Query: 669 RLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
LY I++LDF SLYPS+I YN C++T
Sbjct: 828 GLYETLILLLDFNSLYPSIIQEYNICYTT 856
>POMBASE|SPAC3H5.06c [details] [associations]
symbol:pol1 "DNA polymerase alpha catalytic subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IGI] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IGI] [GO:0006270
"DNA replication initiation" evidence=IMP] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IMP] [GO:0043596 "nuclear
replication fork" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
PomBase:SPAC3H5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0051539 GO:GO:0003688
GO:GO:0000790 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0000723 GO:GO:0033314 GO:GO:0003887 KO:K02320 GO:GO:0006269
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 EMBL:X58299
EMBL:X69673 EMBL:AB027936 PIR:S15993 RefSeq:NP_594186.1
ProteinModelPortal:P28040 IntAct:P28040 STRING:P28040
EnsemblFungi:SPAC3H5.06c.1 GeneID:2543629 KEGG:spo:SPAC3H5.06c
HOGENOM:HOG000163524 OMA:GSGTDME OrthoDB:EOG4K0TWK NextBio:20804635
GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Uniprot:P28040
Length = 1405
Score = 320 (117.7 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 145/629 (23%), Positives = 268/629 (42%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE-KRN 510
+E L + F+ VR +DPD+ G++ E + + LL R ++ + R+ E R+
Sbjct: 601 SEVSLLNNFLNKVRTYDPDVYFGHDFE-MCYSVLLSRLKERKIHNWSSIGRLRRSEWPRS 659
Query: 511 SSRDEVKNTQLQM-PGRIVINLWRLL-RHEVNLQSYTFENIMYHVLH-ERIPLHSWKLLT 567
+R + + Q+ GR++ +L R + QS++ I+ L +R ++ K L
Sbjct: 660 FNRSSQQFVEKQIIAGRLMCDLSNDFGRSMIKAQSWSLSEIVLKELDIKRQDINQEKALQ 719
Query: 568 CWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFR 627
W + L ++ H I I + ++ + + + + G + L+ R
Sbjct: 720 SWTDTAHGLLDYLV--HCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAER 777
Query: 628 VESIMLRLSRLNNFVAVSP--SIKQRAH-MRAPESLPL-ILEPESRLYTDPIIVLDFQSL 683
E I+L + N ++ SI++ A A + L L + Y ++ + L
Sbjct: 778 NEYILLHEFKKNGYIVPDKQQSIRRHAEAFGAEDGLQEESLGKKKDKYKGGLVFEPQKGL 837
Query: 684 YPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVD 743
Y + I+ ++ S ++ + F +D + S ++ +PS
Sbjct: 838 YETCILVMDFN-SLYPSIIQEYNIC----FTTVDRSPSNSDS---DDQIPDTPSA----- 884
Query: 744 KSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG---YT 800
S GI P+++ +++ R +K +K+ + + +Q LKL AN YG YT
Sbjct: 885 -SANQGIFPRLIANLVERRRQIKGLLKDNSATPTQRLQWDIQQQALKLTANSMYGCLGYT 943
Query: 801 AANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQ 860
+ F R P + + KGRE L E + +V+YGDTDS+ + K
Sbjct: 944 KSRFYAR-PLAVL---ITYKGREALMNTKELADQMG---LQVIYGDTDSVMLNTNVTDKN 996
Query: 861 EAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGI 920
A IG E ++ + VYQ +L KK+Y ++ Q KP + KG+
Sbjct: 997 HALRIGNEFKEKVNERYSKL-EIDIDNVYQRMLLHAKKKYAALQLDS--QGKPNLDVKGL 1053
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEK---QFS-KIISGRISVQD-MTFA 975
+ RR+ C + K L + + V E + FS K+ +G+ + F
Sbjct: 1054 DMKRREFCTLAKEASKFCLDQILSGELTETVIENIHSYLMDFSEKMRNGKFPANKFIIFN 1113
Query: 976 KEYRGQAGYKPGACVPALSLARQWVLTDPRAEP-RVSERVPYVIV-SGAPGLPLIKLVKS 1033
+ + Y G +P + +A + R E RV + +P++I S A G P + S
Sbjct: 1114 RLGKNPEDYPNGKTMPFVQVALK---KKARGENVRVGDVIPFIIAGSDADGHPADRAY-S 1169
Query: 1034 PYELLQ-DSSLRLNSEYYITRVIIPPLER 1061
P E++ +S+L ++ YY++ I+PP+ER
Sbjct: 1170 PQEIMNTNSTLVIDYNYYLSHQILPPIER 1198
Score = 41 (19.5 bits), Expect = 5.9e-23, Sum P(2) = 5.9e-23
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 232 SVSSRVEQKILENEQCSQKGI-VDVKCFEESSALERSMKPDDRPS 275
+V S + ++ EQ Q+ + + + FE +E+ + +D PS
Sbjct: 525 TVMSLAFRTLINKEQNKQEVVMISARIFENVD-IEKGLPANDMPS 568
>UNIPROTKB|I3LIH4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSSSCT00000027952 OMA:ESHETTT Uniprot:I3LIH4
Length = 497
Score = 232 (86.7 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 69/283 (24%), Positives = 123/283 (43%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D + GILP+ ++++++ R VKQ MK+ N L RQ LKL AN YG
Sbjct: 215 DPGLEMGILPREIRKLVERRRQVKQLMKQPDLNPDLVLQYDIRQKALKLTANSMYGCLGF 274
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
++S R + V KGRE L E V K V+YGDTDS+ + + +E
Sbjct: 275 SYS-RFYAKPLAALVTYKGREILMHTKEMVQ---KMNLEVIYGDTDSIMINTNSNSLEEV 330
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPI--YEAKGI 920
F++G ++ ++ + +++ +L KK+Y + E I E KG+
Sbjct: 331 FKLGNKVKSEVNKLYKLL-EIDIDGIFKSLLLLKKKKYAALVVEPTSDGNYITKQEVKGL 389
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKI----ISGRISVQDMTFAK 976
+ +RRD C + + + + E ++K+ +I ++G + V K
Sbjct: 390 DIIRRDWCDLAKDTGNFVIGQILSDQSRDTIVENIQKRLIEIGENVLNGSVPVSQFEINK 449
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVI 1018
+ Y +P + +A W+ + + + + V Y+I
Sbjct: 450 ALTKDPQDYPDKKSLPHVHVAL-WINSQGGRKVKAGDTVSYII 491
Score = 102 (41.0 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 650 QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
++ +A S L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 143 KKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 190
Score = 56 (24.8 bits), Expect = 8.9e-23, Sum P(3) = 8.9e-23
Identities = 22/118 (18%), Positives = 49/118 (41%)
Query: 539 VNLQSYTFENIMYHVLH-ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE 597
+ +SY ++ H+L ER+ + + + E LY +EH I++++
Sbjct: 13 IRCKSYHLSELVQHILKTERVVIPMENVRNMYSESSHLLY---LLEHTWKDAKFILQIMC 69
Query: 598 QLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 655
+L+ + ++ + G L G R E ++L NN++ I ++ +
Sbjct: 70 ELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 127
>UNIPROTKB|Q23AJ0 [details] [associations]
symbol:TTHERM_00424700 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 EMBL:GG662724 RefSeq:XP_001013747.2
UniGene:Tth.5627 ProteinModelPortal:Q23AJ0 EnsemblProtists:EAR93502
GeneID:7845641 KEGG:tet:TTHERM_00424700 ProtClustDB:CLSZ2848284
Uniprot:Q23AJ0
Length = 1396
Score = 238 (88.8 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 90/318 (28%), Positives = 146/318 (45%)
Query: 663 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPF-----GCID 717
+ EPE LY + I++LDF SLYPS+I +N CF+TC+ L + + PF I
Sbjct: 799 VFEPEKGLYNEYIVLLDFNSLYPSIIQEFNVCFTTCVRDPIPLEMQMA-PFLGNKKAAIQ 857
Query: 718 LNVSIRSLK-KLQQKLTISPSGVAFVDK-----SIRC--GI--LPKMLQEILDTRLMVKQ 767
+ + + + K+Q + V +I GI LP +LQ +++ R +VK
Sbjct: 858 YSKNQNTKENKMQDEDEEDNENEQIVQTHDVLPTIEVIKGIAPLPSILQYLVEQRKVVKN 917
Query: 768 SMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQK 827
+K K ++ L +Q KL+AN YG + S R + + + +KGR L
Sbjct: 918 QIKGQKDPQVIE-TLDIKQKAFKLVANSMYGCLGFS-SSRFYAMPLASFITAKGRHILFD 975
Query: 828 AIETVNNTSKWQCRVVYGDTDSMFVLAPGKTK-QEAFEIGKEIAXXXXXXXXXXXKLKFE 886
+ + V + V+YGDTDS+ + PG + EA + G I +L +
Sbjct: 976 SKKIVEDMGY---SVIYGDTDSLMI-KPGTNEFLEAVKTGLSIKIKVNSKYKKL-QLDID 1030
Query: 887 KVYQPCILQTKKRY----VGYMYETADQDKPIY---EAKGIETVRRDGCPAVSKILKKSL 939
V++ +L KK+Y V E + + P E KGI+ VRRD C K L
Sbjct: 1031 GVFKNMLLLKKKKYATLKVANWEEVKNTNAPEKLEKEIKGIDVVRRDWCQLSRDAGNKIL 1090
Query: 940 CLLFETKDLSVVKEYVEK 957
++ E+K + + ++K
Sbjct: 1091 EIILESKSSENMLDDIKK 1108
Score = 107 (42.7 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 52/237 (21%), Positives = 104/237 (43%)
Query: 433 QESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL 492
++ + + T P F NE L F+ + + DPDI++ +++ + + +L R
Sbjct: 540 KQDSITKKGTLPETTKFCLNELNLLEQFLVHFNEIDPDIVVAHDLYSTVFEIILTRIREK 599
Query: 493 GL---NLNQELSRI--TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFE 547
G+ NL +L I +++ K SS + T++ M GR++++ + VN YT E
Sbjct: 600 GIRKWNLLSKLINIGSSDIPKYGSSTFK---TKMAMKGRLLVDTLLSSQEFVNCVEYTLE 656
Query: 548 NIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMT--VEHYLIRVTGIIRLIEQLDFIGRT 605
+ + IP K ++ + YK + V+ + +R++ L + T
Sbjct: 657 ALAQKLFKIEIPRIDAKA----YQQKFATYKLLNSLVDDTYQDIDYALRIMYHLQIVPLT 712
Query: 606 SEMARLFGIQFYEVLSRGSQFRVESIML-RLSRLN-----NFVAVSPSIKQRAHMRA 656
++ + G + L R E ++L + ++LN NF + S K++ H A
Sbjct: 713 KQLTSICGNIWMGSLQNQRAERNEMLLLHKFNQLNYVYPDNFKNLPESYKKK-HKNA 768
Score = 48 (22.0 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 1025 LPLIKLVKSPYELL-QDSSLRLNSEYYITRVIIPPLER 1061
L L+ SP E + Q SL ++ +YY + P++R
Sbjct: 1199 LLLVDKAYSPQEFITQSKSLEIDLQYYKRFQLFEPIKR 1236
Score = 44 (20.5 bits), Expect = 2.1e-14, Sum P(3) = 2.1e-14
Identities = 18/70 (25%), Positives = 32/70 (45%)
Query: 632 MLRLSRLNNFVAVSPSIKQRA-HMRAPESLPL-ILEPESRLYTDPII-----VLDF-QSL 683
+ RL RLN V +KQ + + R + + + E + ++ D I +LDF +S
Sbjct: 5 LTRLERLNKEVKKQNKLKQHSKNNRFDDDMDIEAYEDDEQIEEDDFIDDTQEILDFRESK 64
Query: 684 YPSVIIAYNY 693
I+ + Y
Sbjct: 65 QEQFILQFKY 74
Score = 43 (20.2 bits), Expect = 1.6e-20, Sum P(4) = 1.6e-20
Identities = 7/15 (46%), Positives = 10/15 (66%)
Query: 351 SYAIDAMTPDTTGDY 365
SY + ++PDT G Y
Sbjct: 394 SYEYEVISPDTKGQY 408
>FB|FBgn0259113 [details] [associations]
symbol:DNApol-alpha180 "DNA polymerase alpha 180kD"
species:7227 "Drosophila melanogaster" [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS;NAS;IDA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;NAS;IDA]
[GO:0006260 "DNA replication" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=NAS] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=NAS] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0022008 "neurogenesis"
evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
EMBL:AE014297 GO:GO:0022008 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0006281 GO:GO:0051539
GO:GO:0001882 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
EMBL:D90310 EMBL:S48157 EMBL:AB011813 EMBL:AY070529 PIR:S28079
RefSeq:NP_536736.2 UniGene:Dm.1592 ProteinModelPortal:P26019
SMR:P26019 DIP:DIP-23937N IntAct:P26019 MINT:MINT-206832
STRING:P26019 PaxDb:P26019 EnsemblMetazoa:FBtr0084115 GeneID:42553
KEGG:dme:Dmel_CG6349 CTD:42553 FlyBase:FBgn0259113
OrthoDB:EOG4MPG50 PhylomeDB:P26019 ChEMBL:CHEMBL6039
GenomeRNAi:42553 NextBio:829396 Bgee:P26019 GermOnline:CG6349
Uniprot:P26019
Length = 1488
Score = 205 (77.2 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 87/336 (25%), Positives = 138/336 (41%)
Query: 743 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAA 802
D GILP L+ ++++R VK+ M + LQ H RQ+ LKL AN YG
Sbjct: 913 DSKTEPGILPLQLKRLVESRKEVKKLMAAPDLSPELQMQYHIRQMALKLTANSMYGCLGF 972
Query: 803 NFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEA 862
S R + V KGRE L + V K VVYGDTDS+ + +
Sbjct: 973 AHS-RFFAQHLAALVTHKGREILTNTQQLVQ---KMNYDVVYGDTDSLMINTNITDYDQV 1028
Query: 863 FEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQD--KPIYEAKGI 920
++IG I +L + V+ +L KK+Y + + E KG+
Sbjct: 1029 YKIGHNIKQSVNKLYKQL-ELDIDGVFGCLLLLKKKKYAAIKLSKDSKGNLRREQEHKGL 1087
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLS----VVKEYVEKQFSKIISGRISVQDMTFAK 976
+ VRRD + K L + K L V +EK ++I G + + K
Sbjct: 1088 DIVRRDWSQLAVMVGKAVLDEVLSEKPLEEKLDAVHAQLEKIKTQIAEGVVPLPLFVITK 1147
Query: 977 EY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVI-VSGAPGLPLIKLVK-S 1033
+ R Y A +P + +A + + + + + V YVI + G + +
Sbjct: 1148 QLTRTPQEYANSASLPHVQVALR-MNRERNRRYKKGDMVDYVICLDGTTNAAMQRAYHLD 1206
Query: 1034 PYELLQDSSLRLNSEYYITRVIIPPLERCFLLL-GT 1068
+ +D L+L++ YY+ I P + R +L GT
Sbjct: 1207 ELKTSEDKKLQLDTNYYLGHQIHPVVTRMVEVLEGT 1242
Score = 128 (50.1 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 60/285 (21%), Positives = 125/285 (43%)
Query: 436 ELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN 495
E+ + ++ + H +E+ L S F+ ++ D D+++ ++ + ++ ++ L
Sbjct: 625 EMAKYKSTTVHKH--DSERALLSWFLAQYQKIDADLIVTFDSMDCQLNVITDQ--IVALK 680
Query: 496 LNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 555
+ Q SR+ + S K GR+V ++ R + +SY + + VL
Sbjct: 681 IPQ-WSRMGRLRLSQSFG---KRLLEHFVGRMVCDVKRSAEECIRARSYDLQTLCKQVLK 736
Query: 556 ----ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARL 611
ER+ +++ LL + E + K +++ + + ++RL+ +L+ + ++ +
Sbjct: 737 LKESERMEVNADDLLEMY-EKGESITKLISLT--MQDNSYLLRLMCELNIMPLALQITNI 793
Query: 612 FGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPS-IKQR--------------AHMRA 656
G L G R E ++L N++ + +R A M+
Sbjct: 794 CGNTMTRTLQGGRSERNEFLLLHAFHEKNYIVPDKKPVSKRSGAGDTDATLSGADATMQT 853
Query: 657 PESLP----LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
+ L+LEP LY ++++DF SLYPS+I YN CF+T
Sbjct: 854 KKKAAYAGGLVLEPMRGLYEKYVLLMDFNSLYPSIIQEYNICFTT 898
Score = 58 (25.5 bits), Expect = 2.0e-20, Sum P(3) = 2.0e-20
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 161 LFSGLSEWRQRVCLEVTGDATRNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVT 214
LF ++ + VCL V +N+N ++ ++ P+ + PI+K PT + VT
Sbjct: 382 LFGRTADGKS-VCLRV-----QNINRVL----YLLPRQFLLDPISKEPTKQKVT 425
Score = 43 (20.2 bits), Expect = 7.6e-11, Sum P(2) = 7.6e-11
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 193 HIFPKSNFIKPIAKPPTSKS 212
H F + N+I P KP + +S
Sbjct: 816 HAFHEKNYIVPDKKPVSKRS 835
>UNIPROTKB|Q7RBM5 [details] [associations]
symbol:PY06115 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 TIGRFAMs:TIGR00592 EMBL:AABL01002033
RefSeq:XP_726706.1 ProteinModelPortal:Q7RBM5 STRING:Q7RBM5
GeneID:3792046 KEGG:pyo:PY06115 EuPathDB:PlasmoDB:PY06115
Uniprot:Q7RBM5
Length = 906
Score = 277 (102.6 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 91/301 (30%), Positives = 143/301 (47%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPF-------- 713
L+LEP Y ++ LDF SLYPS+II YN CFST +L +S S
Sbjct: 120 LVLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICFST-FNMKNYLALSGSTSEEIQEETGK 178
Query: 714 -GCIDLNVS-IRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 771
ID N S + +L K Q IS + + DK+ + GILP +L+++++ R +K+ +
Sbjct: 179 RNIIDYNDSDVNNLDKDDQVGDIS--NIDYFDKT-KPGILPSILKQLVEKRAFIKKLIAS 235
Query: 772 YKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIET 831
K N + +L + L +KLI+N YG N R + + KGR LQ
Sbjct: 236 EK-NKEKKELLLVQSLSIKLISNSIYG-CLGNTHNRFYAKYIASYITQKGRNLLQHTKFK 293
Query: 832 VNNTSKWQCRVVYGDTDSMFVLAPGKTKQ-EAFEIGKEIAXXXXXXXXXXXK---LKFEK 887
V ++ +VVYGDTDS+ + K+ ++ ++A K L E
Sbjct: 294 VEK--EFNLKVVYGDTDSIMIDTGIKSSDVNNYKESLKLAHTIKNNINKNYKKLELDLEC 351
Query: 888 VYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKIL-KKSLCLLFETK 946
++ +L KK+Y + K YE KGI ++RD C +SK++ + L ++F K
Sbjct: 352 IFSKLLLLKKKKYACAKVIDPNLGKYEYEMKGINFIKRDFCK-ISKLIGNEMLRIIFSNK 410
Query: 947 D 947
+
Sbjct: 411 E 411
Score = 52 (23.4 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 22/92 (23%), Positives = 40/92 (43%)
Query: 1042 SLRLNSEYYITRVIIPPLER-CFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKSTISQ 1100
+L+++ +YYI I+ P+ R C + GT + + + ++Y + E K I +
Sbjct: 539 NLKIDKDYYIRNQILLPINRLCQYIEGTNI----EKISSCFNIYN---VKEIKSDEQIDE 591
Query: 1101 YFASVNCVCCNQMTQ------NNKGV--CDAC 1124
+ N + T+ N KG CD C
Sbjct: 592 SYLETNVLSLLSETEERFKNINLKGFLNCDNC 623
Score = 46 (21.3 bits), Expect = 5.6e-20, Sum P(3) = 5.6e-20
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 540 NLQSYTFENIMYHVLHERIPLHSWKLLT 567
+L SYT E + Y +LHE H K +T
Sbjct: 69 SLLSYTSECVEYFLLHE---YHKKKYIT 93
>ASPGD|ASPL0000000737 [details] [associations]
symbol:AN10755 species:162425 "Emericella nidulans"
[GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EnsemblFungi:CADANIAT00007097 Uniprot:C8V3I8
Length = 1459
Score = 276 (102.2 bits), Expect = 1.0e-19, P = 1.0e-19
Identities = 159/684 (23%), Positives = 289/684 (42%)
Query: 417 TCPPEE-DRKVGIILIGQESELP-----EVRTKPIQMHFVSNEKELFSIFIENVRQWDPD 470
T PPE+ K ++ S P E+R + +E+ L S F+ + DPD
Sbjct: 571 TTPPEKLPCKTFTVMRPAGSSYPVNFEAEIRKQRGTYMLEKSEQMLLSKFLALFERMDPD 630
Query: 471 ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE-KRNSSRDEVKNTQLQM-PGRIV 528
+L+G++++ + LL R L R+ E +N ++ T+ + GR+V
Sbjct: 631 VLMGHQLQEVDLSILLSRLKEKKTPGWHRLGRLKRGEWPKNFNKGGGFFTERHLVAGRLV 690
Query: 529 INLWRLLRHEVNL--QSYTFENIMYHVL---HERIPLHSWKLLTCWWEHRTHLYKWMTVE 583
++ + + + QS++ + L + R L L W + L ++T
Sbjct: 691 CDVANDMGKSLMMKCQSWSLTEMCDLYLGSGNGRQDLDIDAALKTWATSKDGLVNFVT-- 748
Query: 584 HYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVA 643
H I L+ +L + T + + G + LS R E I+L N ++
Sbjct: 749 HCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFYKNKYIC 808
Query: 644 VSP-SIK-QRAHMRAPESLPLILEPESRL--YTDPIIVLDFQSLYPSVIIAYNYCFSTCL 699
S K Q+A A E + + Y ++ + LY ++ ++ S
Sbjct: 809 PDKYSSKLQKAEEIAQEGDEDDATDKKKKDKYKGGLVFEPERGLYDRYVLVMDFN-SLYP 867
Query: 700 GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEIL 759
++ + F +D S + + +K+ P+ A GILP+++ ++
Sbjct: 868 SIIQEYNIC----FTTVDRTSSAEN--ENDEKVPEVPASDA------EQGILPRLIATLV 915
Query: 760 DTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG---YTAANFSGRMPCVEVGDS 816
R VK+ MK+ ++ + +QL KL AN YG YT + F R P +
Sbjct: 916 GRRREVKKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYAR-PLAML--- 971
Query: 817 VVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXX 876
KGRE L+ E V SK Q RV+YGDTDS+ + T +A ++G+E+
Sbjct: 972 TTFKGREILRSTKELVE--SK-QLRVIYGDTDSVMINTNMDTISDALKVGEELKTAVNER 1028
Query: 877 XXXXXKLKFEKVYQPCILQTKKRYVGY-MYETADQDKPIYEAKGIETVRRDGCPAVSKIL 935
++ + V++ +L KK+Y M E + E KG++ RR+ C A+SK
Sbjct: 1029 YKLL-EIDIDNVFRRLLLHAKKKYAAINMTEVDGKYVDKLEVKGLDMKRREYC-ALSKEA 1086
Query: 936 KKSLC---LLFETKDLSV--VKEYVEKQFSKIISGRISVQD-MTFAKEYRGQAGYKPGAC 989
+ L L + ++L + V +Y+ + + I VQ + + K + Y
Sbjct: 1087 SQRLLNEILSGDDQELVLNRVHDYLRELAGNMREYTIPVQKYVIYTKLSKRPEEYPNKET 1146
Query: 990 VPALSLARQWVLTDPRAEPRVSERVPYVIVSG---APGLPLIKLVKSPYELLQ-DSSLRL 1045
+P +A + + P ++ + Y++ SG LP K + ++++ DS L+
Sbjct: 1147 MPPAQVALRELARGKTVRP--NDVISYIVTSGDSETSSLPPAKRSYTLQDVIKPDSRLKP 1204
Query: 1046 NSEYYITRVIIPPLER-CFLLLGT 1068
+ E+Y+ + I PP+ER C + GT
Sbjct: 1205 DIEFYLLKQIFPPIERLCAPIPGT 1228
>UNIPROTKB|Q5B0J8 [details] [associations]
symbol:AN5932.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004399 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACD01000101
GO:GO:0009228 GO:GO:0008408 GO:GO:0006303 InterPro:IPR013749
Pfam:PF08543 GO:GO:0003887 KO:K02320 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Gene3D:1.20.910.10 InterPro:IPR016084 SUPFAM:SSF48613
InterPro:IPR004305 Pfam:PF03070 GO:GO:0008972 TIGRFAMs:TIGR00097
RefSeq:XP_663536.1 ProteinModelPortal:Q5B0J8 STRING:Q5B0J8
GeneID:2871177 KEGG:ani:AN5932.2 Uniprot:Q5B0J8
Length = 2019
Score = 276 (102.2 bits), Expect = 1.6e-19, P = 1.6e-19
Identities = 159/684 (23%), Positives = 289/684 (42%)
Query: 417 TCPPEE-DRKVGIILIGQESELP-----EVRTKPIQMHFVSNEKELFSIFIENVRQWDPD 470
T PPE+ K ++ S P E+R + +E+ L S F+ + DPD
Sbjct: 571 TTPPEKLPCKTFTVMRPAGSSYPVNFEAEIRKQRGTYMLEKSEQMLLSKFLALFERMDPD 630
Query: 471 ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE-KRNSSRDEVKNTQLQM-PGRIV 528
+L+G++++ + LL R L R+ E +N ++ T+ + GR+V
Sbjct: 631 VLMGHQLQEVDLSILLSRLKEKKTPGWHRLGRLKRGEWPKNFNKGGGFFTERHLVAGRLV 690
Query: 529 INLWRLLRHEVNL--QSYTFENIMYHVL---HERIPLHSWKLLTCWWEHRTHLYKWMTVE 583
++ + + + QS++ + L + R L L W + L ++T
Sbjct: 691 CDVANDMGKSLMMKCQSWSLTEMCDLYLGSGNGRQDLDIDAALKTWATSKDGLVNFVT-- 748
Query: 584 HYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVA 643
H I L+ +L + T + + G + LS R E I+L N ++
Sbjct: 749 HCDTDTYFIAALVLKLQMLSLTKVLTNIAGNSWARTLSGTRAERNEYILLHEFYKNKYIC 808
Query: 644 VSP-SIK-QRAHMRAPESLPLILEPESRL--YTDPIIVLDFQSLYPSVIIAYNYCFSTCL 699
S K Q+A A E + + Y ++ + LY ++ ++ S
Sbjct: 809 PDKYSSKLQKAEEIAQEGDEDDATDKKKKDKYKGGLVFEPERGLYDRYVLVMDFN-SLYP 867
Query: 700 GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEIL 759
++ + F +D S + + +K+ P+ A GILP+++ ++
Sbjct: 868 SIIQEYNIC----FTTVDRTSSAEN--ENDEKVPEVPASDA------EQGILPRLIATLV 915
Query: 760 DTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG---YTAANFSGRMPCVEVGDS 816
R VK+ MK+ ++ + +QL KL AN YG YT + F R P +
Sbjct: 916 GRRREVKKLMKDKRATPEQLALWDTKQLAFKLTANSMYGCLGYTQSRFYAR-PLAML--- 971
Query: 817 VVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIAXXXXXX 876
KGRE L+ E V SK Q RV+YGDTDS+ + T +A ++G+E+
Sbjct: 972 TTFKGREILRSTKELVE--SK-QLRVIYGDTDSVMINTNMDTISDALKVGEELKTAVNER 1028
Query: 877 XXXXXKLKFEKVYQPCILQTKKRYVGY-MYETADQDKPIYEAKGIETVRRDGCPAVSKIL 935
++ + V++ +L KK+Y M E + E KG++ RR+ C A+SK
Sbjct: 1029 YKLL-EIDIDNVFRRLLLHAKKKYAAINMTEVDGKYVDKLEVKGLDMKRREYC-ALSKEA 1086
Query: 936 KKSLC---LLFETKDLSV--VKEYVEKQFSKIISGRISVQD-MTFAKEYRGQAGYKPGAC 989
+ L L + ++L + V +Y+ + + I VQ + + K + Y
Sbjct: 1087 SQRLLNEILSGDDQELVLNRVHDYLRELAGNMREYTIPVQKYVIYTKLSKRPEEYPNKET 1146
Query: 990 VPALSLARQWVLTDPRAEPRVSERVPYVIVSG---APGLPLIKLVKSPYELLQ-DSSLRL 1045
+P +A + + P ++ + Y++ SG LP K + ++++ DS L+
Sbjct: 1147 MPPAQVALRELARGKTVRP--NDVISYIVTSGDSETSSLPPAKRSYTLQDVIKPDSRLKP 1204
Query: 1046 NSEYYITRVIIPPLER-CFLLLGT 1068
+ E+Y+ + I PP+ER C + GT
Sbjct: 1205 DIEFYLLKQIFPPIERLCAPIPGT 1228
>UNIPROTKB|Q755Y6 [details] [associations]
symbol:AER381C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000734 "gene conversion at mating-type
locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 EMBL:AE016818
GenomeReviews:AE016818_GR GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
RefSeq:NP_985237.1 ProteinModelPortal:Q755Y6 STRING:Q755Y6
EnsemblFungi:AAS53061 GeneID:4621453 KEGG:ago:AGOS_AER381C
PhylomeDB:Q755Y6 Uniprot:Q755Y6
Length = 1435
Score = 243 (90.6 bits), Expect = 3.5e-16, P = 3.5e-16
Identities = 133/635 (20%), Positives = 262/635 (41%)
Query: 451 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGL----NLNQELSRI--T 504
++EK L + F +++ DPD+LIG+ +E +S L R L + + + L R
Sbjct: 583 NSEKVLLNCFCAMMKRSDPDVLIGHRLENISLDVLCHRALQLRIPTFSSFGRRLRRSWPE 642
Query: 505 EVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFE-NIMYHVLHERI--PLH 561
K N+S + + GR++ ++ + + + ++E MY V+ +R PL
Sbjct: 643 RFGKNNASMAQFYIRDI-FSGRLLCDISNEMGQSLTPKCQSWELGEMYQVVCQREYKPLE 701
Query: 562 SWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLS 621
+ + E L + + + + + ++ + T ++ L G + L
Sbjct: 702 INFNDSRYHEDANFLV--LALREAITNSSFSAEIAFRIQILSLTKQLTNLAGNSWGHTLG 759
Query: 622 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQ 681
R E I+L NN++ P K+ MR+ + P+ + TD + +
Sbjct: 760 GTRAGRNEFILLHEFYRNNYIL--PD-KESRQMRSARQQQNVDTPDGDVATDSRNS-NKK 815
Query: 682 SLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAF 741
+ Y ++ ++ + + + +P + N+ ++++ + P
Sbjct: 816 AKYQGGLV-FDPDKGLHKNYILVMDFNSLYPSIIQEFNICFTTVERNPHDIDELPQ---- 870
Query: 742 VDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTA 801
V + G+LP++L +++ R VK+ M +++A + RQ LKL AN YG
Sbjct: 871 VPTEAKPGVLPRLLANLVERRREVKKLMNA-ETDAHKKAECDIRQQALKLTANSMYG-CL 928
Query: 802 ANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQE 861
+ R + V +KGRE L + + VVYGDTDS+ + +E
Sbjct: 929 GYVNSRFYAKPLAMLVTNKGREILMNTRQLAESLG---LAVVYGDTDSVMIDTGCDNYRE 985
Query: 862 AFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRY--VGYMYETADQDKPIYEAKG 919
A IG+ ++ + V++ +L KK+Y + ++ A + E KG
Sbjct: 986 ALSIGENFKKLVNERYRLL-EIDIDNVFKKLLLHAKKKYAALNVSFDKAGNEITSLEVKG 1044
Query: 920 IETVRRDGCPAVSKILKKSLCLLFETKD----LSVVKEYVEKQFSKIISGRISVQDMTF- 974
++ RR+ CP ++ + L + +D L V +Y+E SKI + I
Sbjct: 1045 LDMRRREYCPLSKEVSTQVLNTILSDQDSESALENVYDYMETIKSKIENNEIRADKFKIN 1104
Query: 975 AKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER---VPYVIVSGAP----GLPL 1027
+ + Y G +PA+ +A + RA RV + +V+ G P
Sbjct: 1105 TRLSKDPKSYPNGKTMPAVQVALKM-----RAVGRVVNAGTVITFVVTKGTDESEQSNPA 1159
Query: 1028 IKLVKSPYELLQDSS-LRLNSEYYITRVIIPPLER 1061
+ + +E++ ++ L + YY+ + I P+ER
Sbjct: 1160 DR-ARPLHEVMNKANGLVPDPMYYLEKQIFAPVER 1193
>UNIPROTKB|Q0JHE4 [details] [associations]
symbol:Os01g0868300 "DNA polymerase" species:39947 "Oryza
sativa Japonica Group" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005658 "alpha DNA polymerase:primase complex" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 EMBL:AP008207 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 KO:K02320 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0005658 TIGRFAMs:TIGR00592
RefSeq:NP_001044920.1 UniGene:Os.47313 STRING:Q0JHE4 GeneID:4325052
KEGG:osa:4325052 Gramene:Q0JHE4 ProtClustDB:CLSN2686901
Uniprot:Q0JHE4
Length = 1244
Score = 173 (66.0 bits), Expect = 8.5e-14, Sum P(4) = 8.5e-14
Identities = 81/339 (23%), Positives = 148/339 (43%)
Query: 749 GILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSG-R 807
G+LP++L+ +++ R MVK +K ++ ++ +Q LKL AN YG FS R
Sbjct: 673 GVLPELLKSLVERRRMVKSWLKT--ASGLKRQQFDIQQQALKLTANSMYG--CLGFSNSR 728
Query: 808 MPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEI-G 866
+ + + +GRE LQ ++ V N + V+YGDTDS+ + A I G
Sbjct: 729 FYAKPLAELITLQGREILQNTVDLVQNNLNLE--VIYGDTDSIMIHTGLDDISRAKGIAG 786
Query: 867 KEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRD 926
K I ++ + +Y+ +L KK+Y + E KG++ VRRD
Sbjct: 787 KVIQEVNKKYRCL--EIDLDGIYKRMLLLKKKKYAAIKVALDGSLRENIERKGLDMVRRD 844
Query: 927 --------GCPAVSKILKKSLCL-LFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKE 977
G +++IL C + E+ S+V+ V++Q G+ ++ K
Sbjct: 845 WSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQ--VQEQMR---GGQTELEKYIITKS 899
Query: 978 Y-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLP-----LIKLV 1031
+ Y P + +A + + + + + VPY+I S + +
Sbjct: 900 LTKAPEDYPDAKNQPHVQVALR-LKQNGYSGCSAGDTVPYIICSQQDSESTHSGGIAQRA 958
Query: 1032 KSPYELLQD-SSLRLNSEYYITRVIIPPLER-CFLLLGT 1068
+ P EL ++ ++ +YY+++ I P + R C + GT
Sbjct: 959 RHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGT 997
Score = 112 (44.5 bits), Expect = 8.5e-14, Sum P(4) = 8.5e-14
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+LEP+ LY +++LDF SLYPS+I YN CF+T
Sbjct: 619 LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT 654
Score = 48 (22.0 bits), Expect = 8.5e-14, Sum P(4) = 8.5e-14
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 451 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER 488
S+E+ L + + + + D D+L+G+ I LL R
Sbjct: 365 SSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHR 402
Score = 37 (18.1 bits), Expect = 8.5e-14, Sum P(4) = 8.5e-14
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 421 EEDRKVGIILIGQESELPEVRTKPIQMHFVSNEK 454
+ + + +++ E+P V + + + NEK
Sbjct: 260 DSPKDISVLMTSTTLEVPPVVVAAVNLKTIINEK 293
>UNIPROTKB|O48653 [details] [associations]
symbol:LOC_Os01g64820 "DNA polymerase alpha catalytic
subunit" species:39947 "Oryza sativa Japonica Group" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS;IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0005634
"nucleus" evidence=IDA] [GO:0006269 "DNA replication, synthesis of
RNA primer" evidence=IDA] [GO:0006270 "DNA replication initiation"
evidence=IEP] [GO:0006273 "lagging strand elongation" evidence=IEP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 OMA:CASIQGT EMBL:AB004461 EMBL:AP003286
STRING:O48653 Gramene:O48653 Uniprot:O48653
Length = 1534
Score = 173 (66.0 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 81/339 (23%), Positives = 148/339 (43%)
Query: 749 GILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSG-R 807
G+LP++L+ +++ R MVK +K ++ ++ +Q LKL AN YG FS R
Sbjct: 963 GVLPELLKSLVERRRMVKSWLKT--ASGLKRQQFDIQQQALKLTANSMYG--CLGFSNSR 1018
Query: 808 MPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEI-G 866
+ + + +GRE LQ ++ V N + V+YGDTDS+ + A I G
Sbjct: 1019 FYAKPLAELITLQGREILQNTVDLVQNNLNLE--VIYGDTDSIMIHTGLDDISRAKGIAG 1076
Query: 867 KEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRD 926
K I ++ + +Y+ +L KK+Y + E KG++ VRRD
Sbjct: 1077 KVIQEVNKKYRCL--EIDLDGIYKRMLLLKKKKYAAIKVALDGSLRENIERKGLDMVRRD 1134
Query: 927 --------GCPAVSKILKKSLCL-LFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKE 977
G +++IL C + E+ S+V+ V++Q G+ ++ K
Sbjct: 1135 WSLLSKEIGDFCLNQILSGGSCDDVIESIHSSLVQ--VQEQMR---GGQTELEKYIITKS 1189
Query: 978 Y-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLP-----LIKLV 1031
+ Y P + +A + + + + + VPY+I S + +
Sbjct: 1190 LTKAPEDYPDAKNQPHVQVALR-LKQNGYSGCSAGDTVPYIICSQQDSESTHSGGIAQRA 1248
Query: 1032 KSPYELLQD-SSLRLNSEYYITRVIIPPLER-CFLLLGT 1068
+ P EL ++ ++ +YY+++ I P + R C + GT
Sbjct: 1249 RHPEELKRNPDKWMIDIDYYLSQQIHPVVSRLCASIQGT 1287
Score = 112 (44.5 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
L+LEP+ LY +++LDF SLYPS+I YN CF+T
Sbjct: 909 LVLEPKKGLYDKYVLLLDFNSLYPSIIQEYNICFTT 944
Score = 48 (22.0 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 11/38 (28%), Positives = 20/38 (52%)
Query: 451 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER 488
S+E+ L + + + + D D+L+G+ I LL R
Sbjct: 655 SSERALLNRLMIELSKLDCDVLVGHNISGFDLDVLLHR 692
Score = 37 (18.1 bits), Expect = 2.2e-13, Sum P(4) = 2.2e-13
Identities = 6/34 (17%), Positives = 16/34 (47%)
Query: 421 EEDRKVGIILIGQESELPEVRTKPIQMHFVSNEK 454
+ + + +++ E+P V + + + NEK
Sbjct: 550 DSPKDISVLMTSTTLEVPPVVVAAVNLKTIINEK 583
>UNIPROTKB|Q9KSP4 [details] [associations]
symbol:VC_1212 "DNA polymerase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR SUPFAM:SSF53098
GO:GO:0003887 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
Gene3D:3.90.1600.10 InterPro:IPR023211 HSSP:P21189 PIR:E82227
RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4 DNASU:2614645
GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512 Uniprot:Q9KSP4
Length = 787
Score = 153 (58.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 67/283 (23%), Positives = 131/283 (46%)
Query: 415 LYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIG 474
LY+ + +I+IGQ PE PIQ +V +E +L I Q+DPD++IG
Sbjct: 170 LYSIGLDSPMDSRVIMIGQ----PEPAETPIQ--WVEDEYQLLKALIAWFEQFDPDVIIG 223
Query: 475 YEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVIN-LWR 533
+ + + L +R L L + R + ++ + + + +PGR+V++ +
Sbjct: 224 WSVVDFDFRLLHKRAEFHKLKLT--IGRAQQPSFFRTA-SQTQQGFISIPGRVVLDGIDT 280
Query: 534 LLRHEVNLQSYTFENIMYHVLHERIPLHS----WKLLTCWWEH-RTHLYKWMTVEHYLIR 588
L + +S++ E++ +L E +H+ + + H + L ++ + L
Sbjct: 281 LKTATYHFRSWSLESVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVL-- 338
Query: 589 VTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSI 648
V I LDF + +RL G++ + + F L L +L+ V+P++
Sbjct: 339 VNKIFAATHLLDF---AIQRSRLTGVELDRIGGSVAAFT----NLYLPQLHRAGYVAPNL 391
Query: 649 KQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAY 691
+ + +P +++ LY D ++VLDF+SLYPS+I ++
Sbjct: 392 QPENWVASPGGY--VMDSIPGLY-DSVLVLDFKSLYPSIIRSF 431
Score = 106 (42.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 52/208 (25%), Positives = 88/208 (42%)
Query: 789 LKLIANVTYGYTAANFSG-RMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDT 847
+K+I N YG + SG R + S+ +G E + I+T +V+YGDT
Sbjct: 495 IKIIMNSFYGVLGS--SGCRFFDARLASSITMRGHEIM---IQTKRLIEARGYQVIYGDT 549
Query: 848 DSMFVLAPGK-TKQEAFEIG----KEIAX------XXXXXXXXXXKLKFEKVYQPCILQT 896
DS FV G+ ++QEA IG +EI +L++E Y+ ++ T
Sbjct: 550 DSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPT 609
Query: 897 -KKRYVG----YMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVV 951
+ G Y D D KG+E+ R D P + + L+F +D
Sbjct: 610 IRGSETGSKKRYAGLKGDGDNEQLIFKGLESARTDWTPLAQRFQHQLYQLIFHGQD---P 666
Query: 952 KEYVEKQFSKIISGRISVQDMTFAKEYR 979
+ Y+ + ++G++ Q + + K R
Sbjct: 667 ESYIRTIVEQTLAGQLDDQ-LVYQKRLR 693
>TIGR_CMR|VC_1212 [details] [associations]
symbol:VC_1212 "DNA polymerase II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
SUPFAM:SSF53098 GO:GO:0003887 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 PIR:E82227 RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4
DNASU:2614645 GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512
Uniprot:Q9KSP4
Length = 787
Score = 153 (58.9 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 67/283 (23%), Positives = 131/283 (46%)
Query: 415 LYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIG 474
LY+ + +I+IGQ PE PIQ +V +E +L I Q+DPD++IG
Sbjct: 170 LYSIGLDSPMDSRVIMIGQ----PEPAETPIQ--WVEDEYQLLKALIAWFEQFDPDVIIG 223
Query: 475 YEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVIN-LWR 533
+ + + L +R L L + R + ++ + + + +PGR+V++ +
Sbjct: 224 WSVVDFDFRLLHKRAEFHKLKLT--IGRAQQPSFFRTA-SQTQQGFISIPGRVVLDGIDT 280
Query: 534 LLRHEVNLQSYTFENIMYHVLHERIPLHS----WKLLTCWWEH-RTHLYKWMTVEHYLIR 588
L + +S++ E++ +L E +H+ + + H + L ++ + L
Sbjct: 281 LKTATYHFRSWSLESVSQELLGEGKAIHNVHDRMDEINQMFRHDKPSLARYNLQDCVL-- 338
Query: 589 VTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSI 648
V I LDF + +RL G++ + + F L L +L+ V+P++
Sbjct: 339 VNKIFAATHLLDF---AIQRSRLTGVELDRIGGSVAAFT----NLYLPQLHRAGYVAPNL 391
Query: 649 KQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAY 691
+ + +P +++ LY D ++VLDF+SLYPS+I ++
Sbjct: 392 QPENWVASPGGY--VMDSIPGLY-DSVLVLDFKSLYPSIIRSF 431
Score = 106 (42.4 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 52/208 (25%), Positives = 88/208 (42%)
Query: 789 LKLIANVTYGYTAANFSG-RMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDT 847
+K+I N YG + SG R + S+ +G E + I+T +V+YGDT
Sbjct: 495 IKIIMNSFYGVLGS--SGCRFFDARLASSITMRGHEIM---IQTKRLIEARGYQVIYGDT 549
Query: 848 DSMFVLAPGK-TKQEAFEIG----KEIAX------XXXXXXXXXXKLKFEKVYQPCILQT 896
DS FV G+ ++QEA IG +EI +L++E Y+ ++ T
Sbjct: 550 DSTFVALGGQYSQQEADNIGHALVREINQWWTEHLKQEYALTSILELEYETHYRRFLMPT 609
Query: 897 -KKRYVG----YMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVV 951
+ G Y D D KG+E+ R D P + + L+F +D
Sbjct: 610 IRGSETGSKKRYAGLKGDGDNEQLIFKGLESARTDWTPLAQRFQHQLYQLIFHGQD---P 666
Query: 952 KEYVEKQFSKIISGRISVQDMTFAKEYR 979
+ Y+ + ++G++ Q + + K R
Sbjct: 667 ESYIRTIVEQTLAGQLDDQ-LVYQKRLR 693
>SGD|S000005046 [details] [associations]
symbol:POL1 "Catalytic subunit of the DNA polymerase I
alpha-primase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IMP] [GO:0006270 "DNA replication
initiation" evidence=IC] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IDA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000076
"DNA replication checkpoint" evidence=IBA] [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IBA] [GO:0000734 "gene conversion
at mating-type locus, DNA repair synthesis" evidence=IBA]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0006279 "premeiotic DNA
replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 SGD:S000005046 GO:GO:0005739
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 EMBL:BK006947
GO:GO:0051539 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0006278 EMBL:Z50161 GO:GO:0000084 GO:GO:0000076 PDB:3OIQ
PDBsum:3OIQ GO:GO:0006279 GO:GO:0003887 RefSeq:NP_014297.3
GeneID:855621 KEGG:sce:YNL102W KO:K02320 GO:GO:0006273
GO:GO:0006269 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 PDB:3FLO PDBsum:3FLO HOGENOM:HOG000163524
OrthoDB:EOG4K0TWK GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:J03268 EMBL:Z71378 EMBL:Z12126 PIR:S58250
RefSeq:NP_014303.3 ProteinModelPortal:P13382 SMR:P13382
DIP:DIP-2526N IntAct:P13382 MINT:MINT-421899 STRING:P13382
PaxDb:P13382 PeptideAtlas:P13382 PRIDE:P13382 EnsemblFungi:YNL102W
GeneID:855628 KEGG:sce:YNL096C CYGD:YNL102w
GeneTree:ENSGT00550000074891 KO:K02993 OMA:CASIQGT
EvolutionaryTrace:P13382 NextBio:979813 ArrayExpress:P13382
Genevestigator:P13382 GermOnline:YNL102W Uniprot:P13382
Length = 1468
Score = 222 (83.2 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 129/647 (19%), Positives = 263/647 (40%)
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGL----NLNQE 499
P ++ +NEK + S F ++ DPD++IG+ ++ + L R + L + ++ +
Sbjct: 607 PGRVRLFNNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYLDVLAHRMHDLNIPTFSSIGRR 666
Query: 500 LSRITEVEKRNSSRDEVKNTQLQ--MPGRIVINLWRLLRHEVNLQSYTFE-NIMYHVLHE 556
L R T EK + + + GR++ ++ + + + +++ + MY V E
Sbjct: 667 LRR-TWPEKFGRGNSNMNHFFISDICSGRLICDIANEMGQSLTPKCQSWDLSEMYQVTCE 725
Query: 557 RI--PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGI 614
+ PL +++ + M ++ + + ++ + T ++ L G
Sbjct: 726 KEHKPLDI-DYQNPQYQNDVNSMT-MALQENITNCMISAEVSYRIQLLTLTKQLTNLAGN 783
Query: 615 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPS-IKQRAHMRAP--ESLPLILEPESRLY 671
+ + L R E I+L N F+ + RA + E+ + + Y
Sbjct: 784 AWAQTLGGTRAGRNEYILLHEFSRNGFIVPDKEGNRSRAQKQRQNEENADAPVNSKKAKY 843
Query: 672 TDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQK 731
++ + L+ + ++ ++ S ++ + F +D R+ + + +
Sbjct: 844 QGGLVFEPEKGLHKNYVLVMDFN-SLYPSIIQEFNIC----FTTVD-----RNKEDIDEL 893
Query: 732 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMK-EYKSNAALQRVLHARQLGLK 790
++ PS V D+ G+LP++L ++D R VK+ MK E + +Q RQ LK
Sbjct: 894 PSVPPSEV---DQ----GVLPRLLANLVDRRREVKKVMKTETDPHKRVQ--CDIRQQALK 944
Query: 791 LIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSM 850
L AN YG + R + V +KGRE L + + + VVYGDTDS+
Sbjct: 945 LTANSMYG-CLGYVNSRFYAKPLAMLVTNKGREILMNTRQLAESMN---LLVVYGDTDSV 1000
Query: 851 FVLAPGKTKQEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMY--ETA 908
+ +A +IG ++ + V++ +L KK+Y +
Sbjct: 1001 MIDTGCDNYADAIKIGLGFKRLVNERYRLL-EIDIDNVFKKLLLHAKKKYAALTVNLDKN 1059
Query: 909 DQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKD----LSVVKEYVEKQFSKIIS 964
+ E KG++ RR+ CP + L + KD L V +Y+E K+ +
Sbjct: 1060 GNGTTVLEVKGLDMKRREFCPLSRDVSIHVLNTILSDKDPEEALQEVYDYLEDIRIKVET 1119
Query: 965 GRISVQDMTF-AKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVI----- 1018
I + K + Y G +PA+ +A + + + + +VI
Sbjct: 1120 NNIRIDKYKINMKLSKDPKAYPGGKNMPAVQVALR--MRKAGRVVKAGSVITFVITKQDE 1177
Query: 1019 VSGAPGLPLIKLVKSPYEL----LQDSSLRLNSEYYITRVIIPPLER 1061
+ A P + + + + L ++ ++L + +YY+ + I P+ER
Sbjct: 1178 IDNAADTPALSVAERAHALNEVMIKSNNLIPDPQYYLEKQIFAPVER 1224
Score = 38 (18.4 bits), Expect = 3.8e-12, Sum P(2) = 3.8e-12
Identities = 8/22 (36%), Positives = 14/22 (63%)
Query: 375 VTSH-VENYYLTVLAVEIHAIS 395
+ H ++N YL VLA +H ++
Sbjct: 635 IIGHRLQNVYLDVLAHRMHDLN 656
>UNIPROTKB|A8IXV5 [details] [associations]
symbol:CHLREDRAFT_172920 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 PRINTS:PR00106 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 GO:GO:0006287 GO:GO:0043625 EMBL:DS496126
RefSeq:XP_001693242.1 EnsemblPlants:EDP03268 GeneID:5718970
KEGG:cre:CHLREDRAFT_172920 ProtClustDB:CLSN2921640 Uniprot:A8IXV5
Length = 350
Score = 129 (50.5 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 595 LIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHM 654
L+E+L + EMAR+ G+ +VL + S++ R + N++ V + + +
Sbjct: 104 LMERLATLPEMLEMARVTGLTLTQVLYNAQMIKTWSLLHRNAHRQNYI-VGGAREAGSLT 162
Query: 655 RAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 697
+P L I + LY P+ LDF SLYPS+ A+N C++T
Sbjct: 163 ESPYLLHPIENKTAGLYRGPVATLDFASLYPSLFRAHNLCYTT 205
Score = 77 (32.2 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 23/75 (30%), Positives = 35/75 (46%)
Query: 746 IRCGILPKMLQEILDTRLMVKQSMK-----------EYKSNAALQRVLHARQLGLKLIAN 794
+R GILP +L ++ R + ++K + + AA VL RQ LK+ AN
Sbjct: 212 VRLGILPTILAALMTARAATRAAIKALGGGGSGAATDLHAAAAAAMVLDGRQKALKVTAN 271
Query: 795 VTYGYTAANFSGRMP 809
YG+T R+P
Sbjct: 272 ALYGFTGGWKRRRLP 286
Score = 60 (26.2 bits), Expect = 5.8e-10, Sum P(3) = 5.8e-10
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 883 LKFEKVYQPCILQTKKRYVGYMYET-----ADQDKPIYEAKGIETVRR 925
L+FE+V PC+L RY G +T A + + KGI+++ R
Sbjct: 303 LQFERVLAPCLLLHVNRYAGRALDTEAAAEAPEQRGTLLVKGIKSMWR 350
>UNIPROTKB|P21189 [details] [associations]
symbol:polB "DNA polymerase II" species:83333 "Escherichia
coli K-12" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045004 "DNA replication proofreading"
evidence=IDA] [GO:0009432 "SOS response" evidence=IEA;IEP]
[GO:0006261 "DNA-dependent DNA replication" evidence=IMP]
[GO:0008296 "3'-5'-exodeoxyribonuclease activity" evidence=IDA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA;IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005694 GO:GO:0000166 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
SUPFAM:SSF53098 EMBL:M35371 EMBL:M62646 EMBL:M37727 EMBL:M38283
GO:GO:0009432 GO:GO:0003887 GO:GO:0006297 EMBL:X54847 PIR:S15943
RefSeq:NP_414602.1 RefSeq:YP_488366.1 PDB:1Q8I PDB:3K57 PDB:3K58
PDB:3K59 PDB:3K5L PDB:3K5M PDB:3K5N PDB:3K5O PDB:3MAQ PDBsum:1Q8I
PDBsum:3K57 PDBsum:3K58 PDBsum:3K59 PDBsum:3K5L PDBsum:3K5M
PDBsum:3K5N PDBsum:3K5O PDBsum:3MAQ ProteinModelPortal:P21189
SMR:P21189 IntAct:P21189 PRIDE:P21189
EnsemblBacteria:EBESCT00000004906 EnsemblBacteria:EBESCT00000016904
GeneID:12932627 GeneID:944779 KEGG:ecj:Y75_p0060 KEGG:eco:b0060
PATRIC:32115221 EchoBASE:EB0740 EcoGene:EG10747 eggNOG:COG0417
HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
BioCyc:EcoCyc:EG10747-MONOMER BioCyc:ECOL316407:JW0059-MONOMER
BioCyc:MetaCyc:EG10747-MONOMER EvolutionaryTrace:P21189
Genevestigator:P21189 GO:GO:0008296 GO:GO:0045004 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 Uniprot:P21189
Length = 783
Score = 113 (44.8 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 63/287 (21%), Positives = 114/287 (39%)
Query: 789 LKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTD 848
LK+I N YG + R + S+ +G + +++ + + + V+YGDTD
Sbjct: 492 LKIIMNAFYGVLGTT-ACRFFDPRLASSITMRGHQIMRQT-KALIEAQGYD--VIYGDTD 547
Query: 849 SMFVLAPGK-TKQEAFEIGKEIAXXXXX---------XXXXXXKLKFEKVYQPCILQT-K 897
S FV G +++EA +IG+ + +L++E + ++ T +
Sbjct: 548 STFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALELEYETHFCRFLMPTIR 607
Query: 898 KRYVG----YMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKE 953
G Y + DK KG+ETVR D P + ++ +F + +E
Sbjct: 608 GADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNEPY---QE 664
Query: 954 YVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSER 1013
YV + K+++G + + + + K R P + AR L D + R
Sbjct: 665 YVRETIDKLMAGELDAR-LVYRKRLRRPLSEYQRNVPPHVRAAR---LADEENQKR-GRP 719
Query: 1014 VPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLE 1060
+ Y + + P E L L+ E+Y+TR + P E
Sbjct: 720 LQY---QNRGTIKYVWTTNGP-EPLDYQRSPLDYEHYLTRQLQPVAE 762
Score = 101 (40.6 bits), Expect = 8.8e-08, Sum P(2) = 8.8e-08
Identities = 73/312 (23%), Positives = 129/312 (41%)
Query: 394 ISRALLKPDPAY-DEVKAIFYYLYTCPPEEDRKVGIILIGQE------SELPEVRTKPIQ 446
I A LKP P Y +K + + T E +G+ GQ E + + +
Sbjct: 135 IVNARLKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFE 194
Query: 447 MHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG--YVLGLNLNQELSRIT 504
+ +V++ +L +DPD++IG+ + L + Y L L L ++ S
Sbjct: 195 LEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLRLGRDNS--- 251
Query: 505 EVEKRNSSRDEVKNTQL--QMPGRIVINLWRLLRHEV-NLQSYTFENIMYHVLHERIPLH 561
E+E R KN Q GR++I+ L+ N S++ E + +L E +
Sbjct: 252 ELEWREHG---FKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSID 308
Query: 562 S-WKLLT----CWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 616
+ W + + E + L + + L VT I E + F+ E A + G+
Sbjct: 309 NPWDRMDEIDRRFAEDKPALATYNLKDCEL--VTQIFHKTEIMPFL---LERATVNGLP- 362
Query: 617 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 676
V G L R++ V+P++ + +P +++ LY D ++
Sbjct: 363 --VDRHGGSVAAFG-HLYFPRMHRAGYVAPNLGEVPPHASPGGY--VMDSRPGLY-DSVL 416
Query: 677 VLDFQSLYPSVI 688
VLD++SLYPS+I
Sbjct: 417 VLDYKSLYPSII 428
>UNIPROTKB|A8J9T2 [details] [associations]
symbol:POLA1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 Pfam:PF00136 Pfam:PF03104 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 EMBL:DS496147
RefSeq:XP_001698708.1 ProteinModelPortal:A8J9T2
EnsemblPlants:EDO99390 GeneID:5724235 KEGG:cre:CHLREDRAFT_177262
BioCyc:CHLAMY:CHLREDRAFT_177262-MONOMER Uniprot:A8J9T2
Length = 1114
Score = 129 (50.5 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 34/105 (32%), Positives = 53/105 (50%)
Query: 599 LDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSP-SIKQRAHM--R 655
L + T +++ L G + L+ R+E ++L F+ S K +A
Sbjct: 536 LSVLPLTKQLSALSGQLWSRTLAGQRAGRIEMLLLHEFHSRKFIVPDKQSYKSKAAPSGN 595
Query: 656 APESLP-LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL 699
P+ L+LEP+ LY +I+LDF SLYPS+I YN CF+T +
Sbjct: 596 GPKYAGGLVLEPKKGLYDKIVIILDFNSLYPSIIQEYNICFTTAI 640
Score = 79 (32.9 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 882 KLKFEKVYQPCILQTKKRYVGYMYETADQDK--PIYEAKGIETVRRDGCPAVSK 933
+++ + V++ +L KK+Y E Q + + E KG++ VRRD CP +SK
Sbjct: 702 EIELDGVFKSILLLKKKKYAAVKLEPDGQGRLAEVMEQKGLDIVRRDWCP-LSK 754
Score = 53 (23.7 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE 507
+E+ L + + ++ D D+L+G+ + LL R + L + R+ + E
Sbjct: 377 SERSLLTCLLARLQSLDADVLVGHNVAAFDLTTLLSRMQHHKVPLWSRIGRVKKTE 432
>TIGR_CMR|SO_1820 [details] [associations]
symbol:SO_1820 "DNA polymerase II" species:211586
"Shewanella oneidensis MR-1" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=ISS] [GO:0006260 "DNA replication"
evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR SUPFAM:SSF53098
GO:GO:0003887 HOGENOM:HOG000221829 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 RefSeq:NP_717428.1 ProteinModelPortal:Q8EFZ4
GeneID:1169593 KEGG:son:SO_1820 PATRIC:23523263 Uniprot:Q8EFZ4
Length = 808
Score = 108 (43.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 62/270 (22%), Positives = 117/270 (43%)
Query: 428 IILIGQ-ESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLL 486
+I++G+ +S+ P+ + +VS+E L I ++DPD++IG+ + T L
Sbjct: 204 VIMVGEVQSDAPQY------IEWVSDEAMLIRRLIAWFAEFDPDVIIGWSVVTFDLALLY 257
Query: 487 ERGYV--LGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEV-NLQS 543
R + + L L + + E + N R E N +PGR+V++ L+ + +
Sbjct: 258 RRALLHRIPLRLGRG-GALLEWKVDNKFRPETLN----LPGRVVLDGIDWLKAAFYHFER 312
Query: 544 YTFENIMYHVLHERIPLHS-----WKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQ 598
++ E + +L E +H ++ + E + L + + L V I +
Sbjct: 313 FSLEFVAQALLGEGKAIHDVENRVQEIDALFTEDKQSLAHYNLTDSRL--VWDIFEHTQL 370
Query: 599 LDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPE 658
DF A L G++ V + + F L L L+ V+P+ + +P
Sbjct: 371 WDF---ALARAELTGLELGRVGASVAAFN----HLYLPHLHRAGYVAPAEPASQGIESPG 423
Query: 659 SLPLILEPESRLYTDPIIVLDFQSLYPSVI 688
+++ Y I+V DF+SLYPS+I
Sbjct: 424 GY--VMDSVPGFYQH-ILVFDFKSLYPSII 450
Score = 94 (38.1 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 76/342 (22%), Positives = 132/342 (38%)
Query: 745 SIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANF 804
S R ILPK++Q + + R K+ ++NA L + + K+I N YG
Sbjct: 486 SRRQPILPKLIQTLSEQREKAKR-----EANAPLSQAI-------KIIMNSLYGVL---- 529
Query: 805 SGRMPCV----EVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFV-LAPGKTK 859
G CV ++ S+ +G + +++ + +Q V+YGDTDS FV L
Sbjct: 530 -GSQGCVFHDAKLASSITMRGHQIMKQTRAWIEEMG-YQ--VIYGDTDSTFVHLGYEPDL 585
Query: 860 QEAFEIGKEIAXXXXXXXXXXXKLKFEKVYQPCILQTKKRYVGYMYETA----DQDKPIY 915
+ +GK+IA FE + LQ ++ Y + T + K Y
Sbjct: 586 SDISALGKQIAAQINANWQAKITKDFE-LESFLELQFERHYEQFFMPTLRGSEEGSKKRY 644
Query: 916 -----EAKGIETVRRDGCPAV----SKILKKSLCLLFETK-DLSVVKEYVEKQFSKIISG 965
G + G V S + +K L+E + + Y+ ++ +G
Sbjct: 645 VGAWRNVSGELEITFKGMEQVRSDWSPLARKVQAELYERMFNQRDISGYLADVIGELQAG 704
Query: 966 RISVQDMTFAKEYRGQAGYKPGACVPALSLARQWV-LTDPRAEPRVSERVPYVIVSGAPG 1024
+ ++ F+K R P + +ARQ LT + + ++ YVI P
Sbjct: 705 KRD-DELIFSKRMRRNLEEYTAKSSPHVKVARQLCELTGKASYSKRGAQIDYVITVNGP- 762
Query: 1025 LPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLL 1066
E + S ++ +YYI + I P E F ++
Sbjct: 763 -----------EPVSHRSSTIDYQYYIDKQIGPIAEPVFSIM 793
>UNIPROTKB|P26811 [details] [associations]
symbol:dpo1 "DNA polymerase 1" species:273057 "Sulfolobus
solfataricus P2" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE006641
GenomeReviews:AE006641_GR GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
EMBL:X64466 EMBL:U92875 EMBL:Y18930 PIR:F90201 PIR:S23019
RefSeq:NP_342079.1 PDB:1S5J PDBsum:1S5J ProteinModelPortal:P26811
SMR:P26811 DIP:DIP-48850N GeneID:1454836 KEGG:sso:SSO0552
HOGENOM:HOG000108124 KO:K02319 OMA:HKPYFLT ProtClustDB:PRK05761
EvolutionaryTrace:P26811 Uniprot:P26811
Length = 882
Score = 129 (50.5 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 58/222 (26%), Positives = 99/222 (44%)
Query: 747 RCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLH-ARQLGLKLIANVTYG-YTAANF 804
R GI + + D R+ + + + +N+ Q++L+ Q +K+ N TYG + A F
Sbjct: 559 RPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINATYGVFGAETF 618
Query: 805 SGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFE 864
P V +SV + GR + TV + V+YGDTDS+F+L P K E
Sbjct: 619 PLYAPAV--AESVTALGRYVITS---TVKKAREEGLTVLYGDTDSLFLLNPPKNSLE--N 671
Query: 865 IGKEIAXXXXXXXXXXXKLKFEKVYQPCILQ-TKKRYVGYMYETADQDKPIYEAKGIETV 923
I K + L+ +K Y+ KK Y G +Y QD + + KG+
Sbjct: 672 IIKWVKTTFNLD------LEVDKTYKFVAFSGLKKNYFG-VY----QDGKV-DIKGMLVK 719
Query: 924 RRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISG 965
+R+ V K+ + L+ + VKE ++++ ++ G
Sbjct: 720 KRNTPEFVKKVFNEVKELMISINSPNDVKE-IKRKIVDVVKG 760
Score = 75 (31.5 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 635 LSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYC 694
L++ +N + S IK + + A ++++P + ++ + I VLDF SLYPS+I +N
Sbjct: 477 LAKSSN-IRTSALIKGKGYKGA-----VVIDPPAGIFFN-ITVLDFASLYPSIIRTWNLS 529
Query: 695 FST 697
+ T
Sbjct: 530 YET 532
Score = 38 (18.4 bits), Expect = 7.6e-06, Sum P(3) = 7.6e-06
Identities = 7/24 (29%), Positives = 11/24 (45%)
Query: 557 RIPLHSWKLLTCWWEHRTHLYKWM 580
R + +W +WEHR W+
Sbjct: 448 RTEISTWVKNLYYWEHRKR--NWL 469
>UNIPROTKB|Q0D7U2 [details] [associations]
symbol:Os07g0209500 "Os07g0209500 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR012337 GO:GO:0005634 GO:GO:0005694 GO:GO:0003676
SUPFAM:SSF53098 EMBL:AP008213 GO:GO:0003887 eggNOG:COG0417
GO:GO:0019985 GO:GO:0016035 RefSeq:NP_001059167.2 UniGene:Os.25087
GeneID:4342704 KEGG:osa:4342704 Gramene:Q0D7U2 Uniprot:Q0D7U2
Length = 107
Score = 109 (43.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 521 LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWW 570
+ + GRI++NLWRL+R E+ L +Y+ E + VL ++PL K+L W+
Sbjct: 42 IHVDGRIILNLWRLMRAEIKLNNYSLEAVADEVLR-KVPLVPTKILNRWF 90
>UNIPROTKB|P95979 [details] [associations]
symbol:dpo3 "DNA polymerase 3" species:273057 "Sulfolobus
solfataricus P2" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 Pfam:PF03104 PROSITE:PS00116 SMART:SM00486
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 EMBL:AE006641 GenomeReviews:AE006641_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0019985 OMA:RSFRPYF KO:K02319 EMBL:Y08257 PIR:S75407
RefSeq:NP_341651.1 ProteinModelPortal:P95979 PRIDE:P95979
GeneID:1455332 KEGG:sso:SSO0081 HOGENOM:HOG000222650
ProtClustDB:CLSK2484407 Uniprot:P95979
Length = 764
Score = 132 (51.5 bits), Expect = 0.00013, P = 0.00013
Identities = 52/236 (22%), Positives = 106/236 (44%)
Query: 460 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNT 519
F++ + +DPDI+ Y+ + L W Y+ ER LG+ + ++ R K S
Sbjct: 218 FVDYILNYDPDIIFVYDSDLLPWKYITERASSLGVKI--DIGR-----KIGSEVSVGTYG 270
Query: 520 QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV-LHERIPLHSWKLLTCWWEHRTHLYK 578
+ GR+ ++L LL +E +L ++ ++ + W ++ +W++ +
Sbjct: 271 HYSISGRLNVDLTGLLVNERSLGHVDLIDVSNYLGISPSRYSFKWYEISRYWDNEKNR-- 328
Query: 579 WMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF--YEVLSRGSQFRVESIMLRLS 636
+ Y I I L+ + SE+ ++ G+ V S G+ R+E+ ++R +
Sbjct: 329 -RIIREYSIENARSIYLLGNY-LLSTYSELVKIVGLPLDKLSVASWGN--RIETSLIRTA 384
Query: 637 RLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYN 692
+ + P + + +I++P+ +YTD + VLD S+Y VI +N
Sbjct: 385 TKSG--ELIPIRMDNPNRPSKIKKNIIIQPKVGIYTD-VYVLDISSVYSLVIRKFN 437
>UNIPROTKB|A6V6S5 [details] [associations]
symbol:polB "DNA polymerase" species:381754 "Pseudomonas
aeruginosa PA7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:CP000744 GenomeReviews:CP000744_GR
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 HOGENOM:HOG000221829 KO:K02336 ProtClustDB:PRK05762
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
RefSeq:YP_001348760.1 ProteinModelPortal:A6V6S5 SMR:A6V6S5
STRING:A6V6S5 GeneID:5354072 KEGG:pap:PSPA7_3400 PATRIC:19828452
OMA:SATWSFP BioCyc:PAER381754:GHMY-3442-MONOMER Uniprot:A6V6S5
Length = 788
Score = 99 (39.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 59/240 (24%), Positives = 106/240 (44%)
Query: 461 IENVRQW----DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEV 516
+E + QW DPD +IG+ + L E L + L + + SR+
Sbjct: 208 LERLNQWLAEHDPDAIIGWNLVQFDLRVLHEHAQRLKVPLRLGRGGDEMGWREHGSRNN- 266
Query: 517 KNTQLQMPGRIVINLWRLLRHEV-NLQSYTFENIMYHVLHERIPLHS-WKLLT----CWW 570
+ GR++I+ LR + S++ EN+ +L E + + ++ + +
Sbjct: 267 -HYFAAAAGRLIIDGIEALRSATWSFPSFSLENVARTLLGEGKAIDNPYQRMDEIDRMFA 325
Query: 571 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 630
E + L ++ + L VT I E LDF+ E A + G+ S GS
Sbjct: 326 EDKPALARYNLKDCEL--VTRIFARTELLDFL---LERATVTGLPADR--SGGSVAAFTH 378
Query: 631 IMLRLSRLNNFVAVSPSIKQRAHMRAPESLP--LILEPESRLYTDPIIVLDFQSLYPSVI 688
+ + L FVA P++ ++ PE+ P +++ LY + ++VLD++SLYPS+I
Sbjct: 379 LYMPLMHRAGFVA--PNLGEKR----PEASPGGFVMDSRPGLY-ESVLVLDYKSLYPSII 431
Score = 82 (33.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 26/83 (31%), Positives = 40/83 (48%)
Query: 789 LKLIANVTYGYTAANFSG-RMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDT 847
LK+I N YG + SG R + S+ +G +++ E + V+YGDT
Sbjct: 495 LKIIMNAFYGVLGS--SGCRFFDPRLASSITLRGHRIMRRTRELIEAEGY---TVIYGDT 549
Query: 848 DSMFV-LAPGKTKQEAFEIGKEI 869
DS FV L ++EA IG+ +
Sbjct: 550 DSTFVWLGSPHAEEEAAAIGRAL 572
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.135 0.400 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1200 1135 0.00091 123 3 11 22 0.38 34
38 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 95
No. of states in DFA: 629 (67 KB)
Total size of DFA: 530 KB (2243 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 94.19u 0.10s 94.29t Elapsed: 00:00:42
Total cpu time: 94.26u 0.10s 94.36t Elapsed: 00:00:43
Start: Thu Aug 15 12:11:42 2013 End: Thu Aug 15 12:12:25 2013