RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5921
(1200 letters)
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA
replication, DNA-BI DNA-directed DNA polymerase,
exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae}
Length = 919
Score = 633 bits (1634), Expect = 0.0
Identities = 181/697 (25%), Positives = 316/697 (45%), Gaps = 50/697 (7%)
Query: 384 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 443
L +++ +I R + P+P YD V I + ++ + + S +
Sbjct: 249 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPITGS--- 305
Query: 444 PIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI 503
+ + E+E+ S + + + DPD++IGY YLL R L +N R+
Sbjct: 306 --MIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRL 363
Query: 504 TEVEKRNSSRD-------EVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE 556
V++ + + + GR+ ++L + ++ E L+SYT + H L E
Sbjct: 364 KTVKQEIKESVFSSKAYGTRETKNVNIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGE 423
Query: 557 RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 616
+ + +++ + + + L +RL+E+L + +EMAR+ G+ F
Sbjct: 424 QKEDVHYSIISDLQNGDSET-RRRLAVYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPF 482
Query: 617 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 676
+L+RG Q +V S + R + V P+++ +A E ++EP Y PI
Sbjct: 483 SYLLARGQQIKVVSQLFRKCLEIDTVI--PNMQSQASDDQYEG-ATVIEPIRGYYDVPIA 539
Query: 677 VLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISP 736
LDF SLYPS+++A+N C++T + R K+ + I+P
Sbjct: 540 TLDFNSLYPSIMMAHNLCYTTLCNKAT-----------------VERLNLKIDEDYVITP 582
Query: 737 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVT 796
+G FV R GILP +L E++ R K+ +++ K + + VL+ RQL LK+ AN
Sbjct: 583 NGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEK-DPFKRDVLNGRQLALKISANSV 641
Query: 797 YGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVN------NTSKWQCRVVYGDTDSM 850
YG+T A G++PC+ + SV + GR + K V N K VVYGDTDS+
Sbjct: 642 YGFTGATV-GKLPCLAISSSVTAYGRTMILKTKTAVQEKYCIKNGYKHDAVVVYGDTDSV 700
Query: 851 FVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQ 910
V +EA ++G E A V+ P+ L+FEK Y P +L KKRY G + D+
Sbjct: 701 MVKFGTTDLKEAMDLGTEAAKYVSTLFKHPINLEFEKAYFPYLLINKKRYAGLFWTNPDK 760
Query: 911 DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQ 970
+ + KG+ +VRRD C VS ++ K L + +++ +V + + I+ R+ +
Sbjct: 761 FDKL-DQKGLASVRRDSCSLVSIVMNKVLKKILIERNVDGALAFVRETINDILHNRVDIS 819
Query: 971 DMTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKL 1030
+ +K V A + R P V +RV YVI+ G L
Sbjct: 820 KLIISKTLAPNYTNPQPHAVLAERMKR-----REGVGPNVGDRVDYVIIGG--NDKLYNR 872
Query: 1031 VKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLG 1067
+ P +L++ +++++S YY+T + P+ +
Sbjct: 873 AEDPLFVLEN-NIQVDSRYYLTNQLQNPIISIVAPII 908
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B
polymer alpha family polymerase, transferase; 2.10A
{Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A
2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A*
4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Length = 775
Score = 584 bits (1508), Expect = 0.0
Identities = 167/726 (23%), Positives = 297/726 (40%), Gaps = 69/726 (9%)
Query: 383 YLTVLAVEIHAISRAL----LKPDPAYDEVKAIFYYLYTCPPE----EDRKVGIILIGQE 434
+ + +I R L L P +E+ + + + T E + +I
Sbjct: 106 VVDIYEYDIPFAKRYLIDKGLIPMEGDEELTMLAFAIATLYHEGEEFGTGPILMISYADG 165
Query: 435 SELPEVRTKPIQMHFV---SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV 491
SE + K I + +V S EKE+ F+ VR+ DPD+LI Y + + YL +R
Sbjct: 166 SEARVITWKKIDLPYVDVVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEE 225
Query: 492 LGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMY 551
LG+ L R K D +++ GRI +L+ ++R +NL +YT E +
Sbjct: 226 LGIKFT--LGRDGSEPKIQRMGD---RFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYE 280
Query: 552 HVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARL 611
V + + + WE L + + + L + ++++RL
Sbjct: 281 AVFGKPKEKVYAEEIAQAWESGEGLER--VARYSMEDAKVTYELGREF--FPMEAQLSRL 336
Query: 612 FGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRL 670
G ++V + VE +LR + N +A + P ++ A R + + EPE L
Sbjct: 337 IGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVKEPERGL 396
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 730
+ D I+ LDF+SLYPS+II +N T GC + +V+
Sbjct: 397 W-DNIVYLDFRSLYPSIIITHNVSPDTLN------------REGCKEYDVA--------- 434
Query: 731 KLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLK 790
G F G +P +L ++L+ R +K+ MK + +++L RQ +K
Sbjct: 435 ----PEVGHKFCKD--FPGFIPSLLGDLLEERQKIKRKMKATV-DPLEKKLLDYRQRAIK 487
Query: 791 LIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSM 850
++AN YGY R C E +SV + GRE ++ I + K+ +V+Y DTD +
Sbjct: 488 ILANSFYGYYGYA-KARWYCKECAESVTAWGREYIEMVIRELEE--KFGFKVLYADTDGL 544
Query: 851 FVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQ 910
PG + + KE + P ++L++E Y TKK+Y E
Sbjct: 545 HATIPGADAETVKKKAKEFLKYINPKLPGLLELEYEGFYVRGFFVTKKKYAVIDEE---- 600
Query: 911 DKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQ 970
K +G+E VRRD + + L + + D+ V++ K+ + +
Sbjct: 601 GK--ITTRGLEIVRRDWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKLSKYEVPPE 658
Query: 971 DMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIK 1029
+ ++ R YK A P +++A++ L + R + Y+++ G+ +
Sbjct: 659 KLVIHEQITRDLRDYK--ATGPHVAVAKR--LAARGVKIRPGTVISYIVLKGSGRIG--D 712
Query: 1030 LVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVL 1089
E + R ++EYYI ++P +ER G +++ L + L
Sbjct: 713 RAIPADEFD-PTKHRYDAEYYIENQVLPAVERILKAFGYRKEDLRYQKTKQVG--LGAWL 769
Query: 1090 NERKKK 1095
+ KK
Sbjct: 770 KVKGKK 775
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A
{Human herpesvirus 1} PDB: 1dml_B*
Length = 1193
Score = 520 bits (1341), Expect = e-165
Identities = 154/860 (17%), Positives = 295/860 (34%), Gaps = 132/860 (15%)
Query: 360 DTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALL------KPDPAYDEVKAIFY 413
D + + S + Y L +E A L P+ ++ + Y
Sbjct: 298 DVEFNCTADNLAIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLY 357
Query: 414 YLYTCPPEED----RKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDP 469
L T E + +EL + +E E+ F+ V+Q+ P
Sbjct: 358 DLSTTALEHVLLFSLGSCDLPESHLNELAARGLPTPVVLEFDSEFEMLLAFMTLVKQYGP 417
Query: 470 DILIGYEIETLSWGYLLERGYVLGLNLNQELSRI----TEVEKRNSSRDEVKNTQLQMPG 525
+ + GY I W +LL + + R+ K +++++ G
Sbjct: 418 EFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVFRVWDIGQSHFQKRSKIKVNG 477
Query: 526 RIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHY 585
+ I+++ ++ ++ L SY + VL ++ S++ + ++ + + E+
Sbjct: 478 MVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRDIPAYYATGPAQ-RGVIGEYC 536
Query: 586 LIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVS 645
+ + +L + S +ARL GI + G Q RV + +LRL+ F+
Sbjct: 537 IQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDGQQIRVFTCLLRLADQKGFILPD 596
Query: 646 PSIKQRAHMRAPESLP-------------------------------------------- 661
+ R P
Sbjct: 597 TQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQG 656
Query: 662 -LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNV 720
+L+P S + +P++V DF SLYPS+I A+N CFST R + + +
Sbjct: 657 AKVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLE----------- 705
Query: 721 SIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR 780
K ++ + + FV +R +L +L++ L R ++ + +
Sbjct: 706 ----AGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQIRSRIPQSSPE--EAV 759
Query: 781 VLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVN------- 833
+L +Q +K++ N YG+T G +PC+ V +V + GRE L E V+
Sbjct: 760 LLDKQQAAIKVVCNSVYGFTGVQ-HGLLPCLHVAATVTTIGREMLLATREYVHARWAAFE 818
Query: 834 -------------NTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNN-NPT 879
+ R++YGDTDS+FVL G T +G ++A+ ++
Sbjct: 819 QLLADFPEAADMRAPGPYSMRIIYGDTDSIFVLCRGLTAAGLTAMGDKMASHISRALFLP 878
Query: 880 PVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKILKKSL 939
P+KL+ EK + +L KK+Y+G +Y KG++ VR++ C +++ + +
Sbjct: 879 PIKLECEKTFTKLLLIAKKKYIGVIYGGK------MLIKGVDLVRKNNCAFINRTSRALV 932
Query: 940 CLLFETKDLSVVKEYVEKQ------------------------FSKIISGRISVQDMTFA 975
LLF +S + ++ +I +QD
Sbjct: 933 DLLFYDDTVSGAAAALAERPAEEWLARPLPEGLQAFGAVLVDAHRRITDPERDIQDFVLT 992
Query: 976 KEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLP--LIKLVKS 1033
E + L++ ++ P + +R+PYVIV+ + + +L
Sbjct: 993 AELSRHPRAYTNKRLAHLTVYY-KLMARRAQVPSIKDRIPYVIVAQTREVEETVARLAAL 1051
Query: 1034 PYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERK 1093
+ P E + L P+
Sbjct: 1052 RELDAAAPGDEPAPPAALPSPAKRPRETPSHADPPGGASKPRKLLVSELAEDPAYAIAHG 1111
Query: 1094 KKSTISQYFASVNCVCCNQM 1113
YF+ + C
Sbjct: 1112 VALNTDYYFSHLLGAACVTF 1131
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA
repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia
coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A*
3k5o_A* 3maq_A* 1q8i_A*
Length = 786
Score = 422 bits (1086), Expect = e-132
Identities = 125/677 (18%), Positives = 239/677 (35%), Gaps = 96/677 (14%)
Query: 414 YLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILI 473
Y R V ++G E+ + + ++ +V++ +L +DPD++I
Sbjct: 169 YCIGLEGCGQRIV--YMLGPEN--GDASSLDFELEYVASRPQLLEKLNAWFANYDPDVII 224
Query: 474 GYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWR 533
G+ + L + L L L R + + Q GR++I+
Sbjct: 225 GWNVVQFDLRMLQKHAERYRLPL--RLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIE 282
Query: 534 LLRHE-VNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI 592
L+ N S++ E + +L E + + + R K + L +
Sbjct: 283 ALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELV 342
Query: 593 IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRA 652
++ + + + E A + G+ GS + +VA P++ +
Sbjct: 343 TQIFHKTEIMPFLLERATVNGLPVDRH--GGSVAAFGHLYFPRMHRAGYVA--PNLGEVP 398
Query: 653 HMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFP 712
+P +++ LY D ++VLD++SLYPS+I + +
Sbjct: 399 PHASP--GGYVMDSRPGLY-DSVLVLDYKSLYPSIIRTFLIDPVGLV------------- 442
Query: 713 FGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY 772
Q S G S LP+++ I R K+ +
Sbjct: 443 ------------EGMAQPDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNK- 489
Query: 773 KSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETV 832
LK+I N YG + R + S+ +G + +++ +
Sbjct: 490 -----------PLSQALKIIMNAFYGVLGTT-ACRFFDPRLASSITMRGHQIMRQTKALI 537
Query: 833 NNTSKWQCRVVYGDTDSMFVLAPG-KTKQEAFEIGKEIANVVTN---------NNPTPVK 882
V+YGDTDS FV G +++EA +IG+ + V + ++
Sbjct: 538 E---AQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALE 594
Query: 883 LKFEKVYQPCILQT--------KKRYVGYMYETADQDKPIYEAKGIETVRRDGCPAVSKI 934
L++E + ++ T KKRY G + + DK KG+ETVR D P +
Sbjct: 595 LEYETHFCRFLMPTIRGADTGSKKRYAGLIQ---EGDKQRMVFKGLETVRTDWTPLAQQF 651
Query: 935 LKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALS 994
++ +F + +EYV + K+++G + + + K R P +
Sbjct: 652 QQELYLRIFRNEP---YQEYVRETIDKLMAGELDARL-VYRKRLRRPLSEYQRNVPPHVR 707
Query: 995 LARQWVLTDPRA----EPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYY 1050
AR + + + + + YV + P +SP L+ E+Y
Sbjct: 708 AARLADEENQKRGRPLQYQNRGTIKYVWTTNGPEPL--DYQRSP----------LDYEHY 755
Query: 1051 ITRVIIPPLERCFLLLG 1067
+TR + P E +
Sbjct: 756 LTRQLQPVAEGILPFIE 772
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
e.8.1.1
Length = 847
Score = 300 bits (769), Expect = 5e-87
Identities = 113/710 (15%), Positives = 233/710 (32%), Gaps = 100/710 (14%)
Query: 384 LTVLAVEI-HAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRT 442
+ +A++I PD E I + K ++L + V+
Sbjct: 190 IKRVAIDIEVYTPVKGRIPDSQKAEFPII---SIALAGSDGLKKVLVLNRNDVNEGSVKL 246
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
I + + E EL F + + + I++ + + Y+ R LG +
Sbjct: 247 DGISVERFNTEYELLGRFFDILL--EYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPID 304
Query: 503 ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPLH 561
+ + + + R E Y + + +L ++ +
Sbjct: 305 V----AGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVD 360
Query: 562 SWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE--QLDFIGRTSEMARLFGIQFYEV 619
+ + L +E+ ++L + +R+ + E+
Sbjct: 361 TLI----SFLDVEKL-----IEYNFRDAEITLQLTTFNNDLTMKLIVLFSRISRLGIEEL 411
Query: 620 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP-----------LILEPES 668
V+++ R N++ P ++ + ++++P +
Sbjct: 412 TRTEISTWVKNLYYWEHRKRNWLI--PLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPA 469
Query: 669 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKL 728
++ I VLDF SLYPS+I +N + T K
Sbjct: 470 GIF-FNITVLDFASLYPSIIRTWNLSYETV-----------------------DIQQCKK 505
Query: 729 QQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQR-VLHARQL 787
++ V + R GI + + D R+ + + + +N+ Q+ + Q
Sbjct: 506 PYEVKDETGEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQR 565
Query: 788 GLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDT 847
+K+ N TYG A + + V +SV + GR + ++ + V+YGDT
Sbjct: 566 AMKVFINATYGVFGAE-TFPLYAPRVAESVTALGRYVITSTVKKAR---EEGLTVLYGDT 621
Query: 848 DSMFVLAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQ-PCILQTKKRYVGYMYE 906
DS+F+L P K E I K + + L+ +K Y+ KK Y G +
Sbjct: 622 DSLFLLNPPKNSLE--NIIKWV------KTTFNLDLEVDKTYKFVAFSGLKKNYFGVYQD 673
Query: 907 TADQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKD-------LSVVKEYVEKQF 959
K + KG+ +R+ V K+ + L+ + + V+ +
Sbjct: 674 ----GK--VDIKGMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSY 727
Query: 960 SKIISGRISVQDMTFAKEY-RGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVI 1018
K+ + ++ ++ F + YK + A Q L + + YV
Sbjct: 728 EKLKNKGYNLDELAFKVMLSKPLDAYKKN-TPQHVKAALQ--LRPFGVNVLPRDIIYYVK 784
Query: 1019 VSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLGT 1068
V G+ P +L +++E Y+ + E+ G
Sbjct: 785 VRSKDGVK-------PVQL--AKVTEIDAEKYLEA-LRSTFEQILRAFGV 824
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT;
1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A*
3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A*
3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A*
3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ...
Length = 903
Score = 97.3 bits (241), Expect = 1e-20
Identities = 111/658 (16%), Positives = 205/658 (31%), Gaps = 132/658 (20%)
Query: 433 QESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER-GYV 491
E+P I NEKEL ++ +Q P IL G+ +E+ + Y+ R +
Sbjct: 174 GGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNI 233
Query: 492 LGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR--HEVNLQSYTFENI 549
G + + LS + + + + G V++ L + N SY+ + I
Sbjct: 234 FGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYI 293
Query: 550 MYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIR-VTGIIRLIEQLDFIGRTSEM 608
L+ + + + Y I V ++++ + FI + +M
Sbjct: 294 SEFELNVGKLKYDGPISKLRESN------HQRYISYNIIAVYRVLQIDAKRQFINLSLDM 347
Query: 609 ARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPES 668
IQ V S ++I+ + N V P + P + + EP
Sbjct: 348 GYYAKIQIQSVFSPIKT--WDAIIFNSLKEQNKVI--PQGRSHPVQPYPGAF--VKEPIP 401
Query: 669 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKL 728
Y ++ D SLYPS+I N T G + + D ++
Sbjct: 402 NRY-KYVMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYI----------NAVAERP 450
Query: 729 QQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNA------------ 776
+ SP+G+ + G++P + ++ + R K M + N
Sbjct: 451 SDVYSCSPNGMMYYKDRD--GVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKEALHNPNL 508
Query: 777 --------------------------------------ALQRVLHARQLGLKLIANVTYG 798
+ Q+ K + N G
Sbjct: 509 SVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQINRKALINGLAG 568
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCR------VVYGDTDSMFV 852
N R + ++ + G+ LQ VN C V+YGDTDS++V
Sbjct: 569 AL-GNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEAFVLYGDTDSIYV 627
Query: 853 LAPGKTKQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPC-------------------- 892
A K + E N + + + E
Sbjct: 628 SA-DKIIDKVGESKFRDTNHWVDFLDKFARERMEPAIDRGFREMCEYMNNKQHLMFMDRE 686
Query: 893 --------------ILQTKKRYVGYMYETADQ--DKPIYEAKGIETVRRDGCPAVSKILK 936
KKRY +++ +P + G+ET + AV K LK
Sbjct: 687 AIAGPPLGSKGIGGFWTGKKRYALNVWDMEGTRYAEPKLKIMGLETQKSSTPKAVQKALK 746
Query: 937 KSLCLLFETKDLSVVKEY--VEKQFSKI----ISGRISVQDMTFAKEYRGQAGYKPGA 988
+ + + + + S+ + + EK+F ++ I+ S ++ +Y P
Sbjct: 747 ECIRRMLQEGEESLQEYFKEFEKEFRQLNYISIASVSSANNI---AKYDVGGFPGPKC 801
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 74.1 bits (181), Expect = 2e-13
Identities = 90/644 (13%), Positives = 206/644 (31%), Gaps = 163/644 (25%)
Query: 116 NTDVTNILSQEPFYSNF-----KDITRTEITNKFV-HLEAAPVALLEEHRCLFSGLSEWR 169
D+ ++ ++ F NF +D+ ++ ++ + + H+ + A+ R LF L +
Sbjct: 18 YKDILSVF-EDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR-LFWTLLSKQ 75
Query: 170 QRVCLEVTGDATR-NVNDIMESFQHI-----FPKSNFIKPIAK-----PPTSK-SVTR-- 215
+ + + + R N +M + +I+ + +K +V+R
Sbjct: 76 EEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQ 135
Query: 216 -WLERKEAFKRNAGTRSSVSSRVEQKI------------LENEQCSQKGIVDVKCFEESS 262
+L+ ++A R + + + + C + F+
Sbjct: 136 PYLKLRQALLE---------LRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFK--- 183
Query: 263 ALERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRESNQSPPNKDSIHEAE------IT 316
++K + P + + P+ +SR S+ S K IH + +
Sbjct: 184 IFWLNLKNCNSPETVLEMLQK---LLYQIDPNWTSR-SDHSSNIKLRIHSIQAELRRLLK 239
Query: 317 HPDCSKSSQI-D--FNPDLFKSF-IR-KQLETPKRRICDSYAIDAMTPDTTGDYQMGLDN 371
+ N + +F + K L T + D ++ TT + +
Sbjct: 240 SKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTR----FKQVTDFLSAATTTHISLDHHS 295
Query: 372 LNEVTSHVENYYLTVL----------AVEIH--AIS--RALLKPDPA-YDEVKAIFYYLY 416
+ V++ L L + + +S ++ A +D + +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD------NWKH 349
Query: 417 TCPPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYE 476
D+ II ES L + + F + S+F + I
Sbjct: 350 ---VNCDKLTTII----ESSLNVLEPAEYRKMF-----DRLSVFPPSA-----HI----P 388
Query: 477 IETLS--WGYLLERGYVLGLNLNQELSRITEVEKRNSSR--------DEVKNTQLQMPG- 525
LS W +++ + + +N +L + + VEK+ E+K
Sbjct: 389 TILLSLIWFDVIK--SDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445
Query: 526 -RIVINLWRLLRH-------EVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHL- 576
R +++ + + + L Y + +I +H L L + L
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVF-----LD 499
Query: 577 YKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE--------VLSRGSQFRV 628
++++ + IR + S + L ++FY+ R V
Sbjct: 500 FRFLEQK---IRHDS-------TAWNASGSILNTLQQLKFYKPYICDNDPKYER----LV 545
Query: 629 ESIMLRLSRLNNFVAVSP--SIKQRAHMRAPESLPLILEPESRL 670
+I+ L ++ + S + + A M E + E ++
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALM--AEDEAIFEEAHKQV 587
Score = 64.9 bits (157), Expect = 1e-10
Identities = 92/524 (17%), Positives = 167/524 (31%), Gaps = 130/524 (24%)
Query: 37 RAENEHMISSSESYLFTQNKSYDSPTIVAK------QTLLPLSGEL-----EKQII---- 81
+ E + Y+ +++ Y+ + AK Q L L L K ++
Sbjct: 99 KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGV 158
Query: 82 --SAKSSSTEGSSVVTSYIKLKCKP--------ISRALVVEELINTDVTNILSQ-EPFYS 130
S K+ V SY K++CK + E ++ + +L Q +P ++
Sbjct: 159 LGSGKTWVA--LDVCLSY-KVQCKMDFKIFWLNLKNCNSPETVLEM-LQKLLYQIDPNWT 214
Query: 131 NFKDITRTEITNKFVHLEAAPVALLEEH---RCLFSGLSE-WRQRV-------C--LEVT 177
+ D + ++A LL+ CL L + C L +T
Sbjct: 215 SRSDHSSNIKLR-IHSIQAELRRLLKSKPYENCLLV-LLNVQNAKAWNAFNLSCKIL-LT 271
Query: 178 GDATRN--VNDIMESFQHIFPKSNFIKPIAKPPTSKSV-TRWLE------RKEAFKRNAG 228
TR V D + + + P KS+ ++L+ +E N
Sbjct: 272 ---TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPR 328
Query: 229 TRSSVSSRVEQKILENEQCSQKGIVDVKCFEESSALERSM---KPDDRPSPTRKNKSTRS 285
S ++ + + + V C + ++ +E S+ +P + R
Sbjct: 329 RLSIIAESIRDGLATWDNWKH-----VNCDKLTTIIESSLNVLEPAE----------YRK 373
Query: 286 SFDS-DMFPSSSSRESNQSPP--------NKDSIHEAEITHPDCSKSSQIDFNPDLFKSF 336
FD +FP S P + + + K S ++ P
Sbjct: 374 MFDRLSVFP-----PSAHIPTILLSLIWFDVIKSDVMVVVN-KLHKYSLVEKQPKESTIS 427
Query: 337 I-------RKQLETPK---RRICDSYAI------DAMTPDTTGDY-------QMGLDNLN 373
I + +LE R I D Y I D + P Y +
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHP 487
Query: 374 EVTSHVENYYLTV--LAVEIHAISRALLKPDPAYDEVKAIFYYL-YTCP--PEEDRKVGI 428
E + +L L +I S A + ++ + +Y Y C P+ +R V
Sbjct: 488 ERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
Query: 429 I---LIGQESELPEVRTKP---IQMHFVSNEKELFSIFIENVRQ 466
I L E L + +K +++ E E +IF E +Q
Sbjct: 548 ILDFLPKIEENL--ICSKYTDLLRIAL-MAEDE--AIFEEAHKQ 586
Score = 62.9 bits (152), Expect = 5e-10
Identities = 102/618 (16%), Positives = 182/618 (29%), Gaps = 203/618 (32%)
Query: 538 EVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE 597
E Y +++I+ + C V+ + E
Sbjct: 10 ETGEHQYQYKDILSVFEDAFV-----DNFDC-----------KDVQDMPKSILSK----E 49
Query: 598 QLDFI----GRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLN-NFVAVSPSIKQRA 652
++D I S RLF +LS+ + V+ + + R+N F+ IK
Sbjct: 50 EIDHIIMSKDAVSGTLRLFWT----LLSKQEEM-VQKFVEEVLRINYKFLM--SPIKTEQ 102
Query: 653 HMRAPESLPLILEPESRLYTDPIIVLDF---------------QSLYPS--VIIAYNY-- 693
+ + I E RLY D + + L P+ V+I
Sbjct: 103 RQPSMMTRMYI-EQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI---DGV 158
Query: 694 --CFSTCLGR--VEHLGVSDSFPFGCIDLNV----SIRSLKKLQQKL--TISPSGVAFVD 743
T + V F LN+ S ++ ++ QKL I P+ + D
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218
Query: 744 KSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAAN 803
S K+ + L K Y+ N L VL
Sbjct: 219 HSSN----IKLRIHSIQAELRRLLKSKPYE-NCLL--VL--------------------- 250
Query: 804 FSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAF 863
+V + KA N C+++ + T+
Sbjct: 251 -----------LNVQNA------KAWNAFNL----SCKIL--------LT----TRF--- 274
Query: 864 EIGKEIANVVTNNNPTPVKL-KFEKVYQPCILQTKK---RYVGYMYETADQDKPIYEAKG 919
K++ + ++ T + L P + K +Y+ QD P E
Sbjct: 275 ---KQVTDFLSAATTTHISLDHHSMTLTPD--EVKSLLLKYLD----CRPQDLPR-EVLT 324
Query: 920 IETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYR 979
P I+ +S+ T D K + + II ++V + EYR
Sbjct: 325 TN-------PRRLSIIAESIRDGLATWDNW--KHVNCDKLTTIIESSLNVLE---PAEYR 372
Query: 980 GQAGYK------PGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKS 1033
+ P A +P + L+ W V + V+V+ L++ K
Sbjct: 373 KM--FDRLSVFPPSAHIPTILLSLIW--------FDVIKSDVMVVVNKLHKYSLVE--KQ 420
Query: 1034 P-------YELLQDSSLRLNSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLP 1086
P + + ++L +EY + R I+ + Y N+P+
Sbjct: 421 PKESTISIPSIYLELKVKLENEYALHRSIV---DH------------Y-NIPKTFD---- 460
Query: 1087 SVLNERKKKSTISQYFAS 1104
++ + QYF S
Sbjct: 461 ---SDDLIPPYLDQYFYS 475
Score = 57.6 bits (138), Expect = 2e-08
Identities = 89/681 (13%), Positives = 201/681 (29%), Gaps = 237/681 (34%)
Query: 376 TSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQES 435
T + Y +L+V A D D K+I ++ I+ S
Sbjct: 11 TGEHQYQYKDILSVFEDAFVDNFDCKD-VQDMPKSIL---------SKEEIDHII---MS 57
Query: 436 ELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN 495
+ T + +S ++E+ F+E V + + Y+ + L+ +
Sbjct: 58 KDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRIN------YK-----F--LMSP---IKTE 101
Query: 496 LNQ-ELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL 554
Q + +E+R+ L+ + Q + Y+V
Sbjct: 102 QRQPSMMTRMYIEQRD-------------------RLYN------DNQVFA----KYNV- 131
Query: 555 HERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI------IRLIEQLDFIGRTSEM 608
R+ + KL R L + + ++ + G+ ++ +M
Sbjct: 132 -SRLQPY-LKL-------RQALLE-LRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKM 180
Query: 609 ARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEP-- 666
F I F+ L+ + E+++ L +L + P+ R+ ++ L +
Sbjct: 181 D--FKI-FW--LNLKNCNSPETVLEMLQKL--LYQIDPNWTSRSD--HSSNIKLRIHSIQ 231
Query: 667 -------ESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGC---- 715
+S+ Y + ++VL N V++ ++F C
Sbjct: 232 AELRRLLKSKPYENCLLVLL------------N---------VQNAKAWNAFNLSCKILL 270
Query: 716 -------ID-------------------------------LNVSIRSLKKLQQKLTISPS 737
D L+ + L + + LT +P
Sbjct: 271 TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--EVLTTNP- 327
Query: 738 GVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHA------RQLGLKL 791
R I+ + +++ L T K + K ++ L+ R++ +L
Sbjct: 328 --------RRLSIIAESIRDGLATWDNWKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRL 378
Query: 792 -I----ANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGD 846
+ A++ + + +V V + +L + K
Sbjct: 379 SVFPPSAHIPTI-LLSLIWFDVIKSDVMVVVNKLHKYSLVE---------KQPKESTISI 428
Query: 847 TDSMFVLAPGKTKQEAFEIGKEIAN------VVTNNNPTPVKLKFEKVYQPCILQTKKRY 900
L + + + + I + +++ P L + Y +
Sbjct: 429 PSIYLELK--VKLENEYALHRSIVDHYNIPKTFDSDDLIPPYL-DQYFYS---------H 476
Query: 901 VGY------MYETADQDKPIY------EAKGIETVRRDG--CPAVSKILKKSLCLLFETK 946
+G+ E + ++ E K +R D A IL L +
Sbjct: 477 IGHHLKNIEHPERMTLFRMVFLDFRFLEQK----IRHDSTAWNASGSILN----TL---Q 525
Query: 947 DLSVVKEYV---EKQFSKIIS 964
L K Y+ + ++ ++++
Sbjct: 526 QLKFYKPYICDNDPKYERLVN 546
Score = 53.7 bits (128), Expect = 4e-07
Identities = 69/453 (15%), Positives = 131/453 (28%), Gaps = 151/453 (33%)
Query: 25 SNSLPEANKMEGRAENEHMISSSESYLFTQNKSYDSPTIVAKQTLLPLSGELEKQIISAK 84
N ++ H I + L ++K Y + LL L + +A
Sbjct: 211 PNWTSRSDHSSNIKLRIHSIQAELRRLL-KSKPY-------ENCLLVLLNVQNAKAWNA- 261
Query: 85 SSSTEGSSVVTSYIKLKCKPI--SRALVVEELINTDVTNILSQEPFYSNFKDITRTEITN 142
L CK + +R V + ++ T +S + +
Sbjct: 262 -------------FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308
Query: 143 KFVHL-------EA---APVAL------LEEHRCLFSGLSEWRQRVC--LEVTGDATRNV 184
K++ E P L + + + W+ C L +++ NV
Sbjct: 309 KYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHVNCDKLTTIIESSLNV 365
Query: 185 ---NDIMESFQH--IFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRSSVSSRVEQ 239
+ + F +FP S I PT W + +
Sbjct: 366 LEPAEYRKMFDRLSVFPPSAHI------PTILLSLIWFDVIK--------------SDVM 405
Query: 240 KILENEQCSQKGIVDVKCFEESS------ALERSMKPDDRPSPTRK--NK-STRSSFDSD 290
++ + + +V+ K +ES+ LE +K ++ + R + + +FDSD
Sbjct: 406 VVVN--KLHKYSLVE-KQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD 462
Query: 291 MFPSSSSRESNQSPPNKDS-----I--H-----------------------EAEITH--- 317
+ PP D I H E +I H
Sbjct: 463 ----------DLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDST 512
Query: 318 PDCSKSSQIDFNPDL--FKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEV 375
+ S ++ L +K +I +R + LD L ++
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI-----------------LDFLPKI 555
Query: 376 TSHVENYYLTVLAVEIHAISRALLKPDPA-YDE 407
++ T L + AL+ D A ++E
Sbjct: 556 EENLICSKYTDL------LRIALMAEDEAIFEE 582
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA
complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP:
c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A*
2pyj_A* 2pyl_A* 2pzs_A*
Length = 575
Score = 58.0 bits (139), Expect = 1e-08
Identities = 52/358 (14%), Positives = 106/358 (29%), Gaps = 78/358 (21%)
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSI-------- 722
+V D SLYP+ + + + + + +P +
Sbjct: 241 EIGEGMVFDVNSLYPAQMYSRLLPYGEPIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIP 300
Query: 723 ----RSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAAL 778
+ + + + SG D + + ++++E D + S ++K+ L
Sbjct: 301 TIQIKRSRFYKGNEYLKSSGGEIADLWL-SNVDLELMKEHYDLYNVEYISGLKFKATTGL 359
Query: 779 QRVL------------HARQLGLKLIANVTYGYTAANFSGRMPC---------------- 810
+ A + KL+ N YG A+N
Sbjct: 360 FKDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEE 419
Query: 811 -------VEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAF 863
+G + + R T A + + R++Y DTDS+ +
Sbjct: 420 ETKDPVYTPMGVFITAWARYTTITAAQACYD------RIIYCDTDSIHLTGTEIPDVIKD 473
Query: 864 EI-GKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKG--- 919
+ K++ E ++ +K Y+ +Y K + +
Sbjct: 474 IVDPKKLG-----------YWAHESTFKRAKYLRQKTYIQDIYMKEVDGKLVEGSPDDYT 522
Query: 920 --IETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFA 975
+V+ G KI K+ + FE + V K + G + + D TF
Sbjct: 523 DIKFSVKCAGMT--DKIKKE---VTFE--NFKVGFSRKMKPKPVQVPGGVVLVDDTFT 573
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 58.1 bits (140), Expect = 2e-08
Identities = 108/696 (15%), Positives = 203/696 (29%), Gaps = 267/696 (38%)
Query: 444 PIQMHFVSNE-KELFSIFIENVRQWDPDILIGYEIETLSWGYLLER--GYVLGLNLNQEL 500
P F++++ +E F+ + +P + E + L+ + GYV
Sbjct: 23 PTASFFIASQLQEQFNKILP-----EPTEGFAADDEPTTPAELVGKFLGYV--------- 68
Query: 501 SRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFE-------NIMYHV 553
S + E + D+V L L FE +I H
Sbjct: 69 SSLVE-PSKVGQFDQV--------------LNLCLTE--------FENCYLEGNDI--HA 103
Query: 554 L-------HERIPLHSWKLLTCWWEHRTHLYKWMTVEHY--LIRV--TGIIRLIE----Q 598
L ++ + + +L+ + R + + L R G +L+ Q
Sbjct: 104 LAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ 163
Query: 599 LDFIGRT----SEMARLFGIQFYEVLSRGSQFRVESIMLRLS-RLNNFVAVSPSIKQ--- 650
G T E+ L+ Y VL V ++ + L+ + + ++
Sbjct: 164 ----GNTDDYFEELRDLYQT--YHVL-------VGDLIKFSAETLSELIRTTLDAEKVFT 210
Query: 651 -----RAHMRAPESLP----LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 701
+ P + P L+ P S P+I + Q +A +Y T +
Sbjct: 211 QGLNILEWLENPSNTPDKDYLLSIPISC----PLIGV-IQ-------LA-HYV-VTA--K 254
Query: 702 VEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDT 761
+ LG + P +L ++ Q L ++ +A D
Sbjct: 255 L--LGFT---PG---ELRSYLKGATGHSQGL-VTAVAIAETD------------------ 287
Query: 762 RLMVKQSMKEYKSNA--ALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGD---- 815
S + + + A+ + +G++ Y T+ S +E +
Sbjct: 288 ------SWESFFVSVRKAITVLFF---IGVR--CYEAYPNTSLPPSILEDSLENNEGVPS 336
Query: 816 ---SVVSKGRETLQKAIETVN--------------NTSKWQCRVVYGDTDSMFVLAPGKT 858
S+ + +E +Q + N N + + VV G S++ L
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGA--KNLVVSGPPQSLYGLNLTLR 394
Query: 859 KQEAFEIGKEIANVVTNNNPTPV---KLKFEKVYQPCILQTKKRYVG------YMYETAD 909
K +A G + + + P KLKF + P V +
Sbjct: 395 KAKA-PSGLDQSRI-------PFSERKLKFSNRFLP---------VASPFHSHLLV---- 433
Query: 910 QDKPIYEAKGIETVRRDGCPAVSKILK--KSLCLLFETKDLSVVKEYVEKQFSKIISGRI 967
PA I K + F KD+ +I
Sbjct: 434 -------------------PASDLINKDLVKNNVSFNAKDI-----------------QI 457
Query: 968 SVQDMTF-AKEYRGQAGYKPGACVPAL-SLARQWVLTDPRAEPRVSERVPYVIVSGAPGL 1025
V D TF + R +G V + L +W T + +++ G PG
Sbjct: 458 PVYD-TFDGSDLRVLSGSISERIVDCIIRLPVKWETT-------TQFKATHILDFG-PGG 508
Query: 1026 P--LIKLVKSPYELLQDSSLRL----------NSEY 1049
L L + +R+ + +Y
Sbjct: 509 ASGLGVLTH---RNKDGTGVRVIVAGTLDINPDDDY 541
Score = 49.7 bits (118), Expect = 7e-06
Identities = 51/313 (16%), Positives = 95/313 (30%), Gaps = 93/313 (29%)
Query: 623 GSQFRVESIM---LRLSRLNNFVAVSPSIKQ---RA--HMRAPESLPL-ILEPESRLYTD 673
GSQ M L S + + RA H + ++ IL+
Sbjct: 1625 GSQ-EQG--MGMDLY--------KTSKAAQDVWNRADNHFK--DTYGFSILD-------- 1663
Query: 674 PIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIR-SLKKLQQKL 732
IV++ P + + F G+ + +++ + V + +K+ +++
Sbjct: 1664 --IVIN----NPVNLTIH---FGGEKGK----RIRENYSAMIFETIVDGKLKTEKIFKEI 1710
Query: 733 TISPSGVAFVDKSIRCGIL-------PKML-QEILDTRLMVKQ------------SMKEY 772
+ F + G+L P + E + + S+ EY
Sbjct: 1711 NEHSTSYTFRSEK---GLLSATQFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLGEY 1767
Query: 773 KSNAALQ------------RVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSK 820
AAL V+ R G + + M + G S
Sbjct: 1768 ---AALASLADVMSIESLVEVVFYR--G-MTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
Query: 821 GRETLQKAIETVNNTSKWQCRVV-YGDTDSMFVLAPGKTKQEAFEIGKEIANVVTNNN-- 877
+E LQ +E V + W +V Y + +V A G + A + + N +
Sbjct: 1822 SQEALQYVVERVGKRTGWLVEIVNYNVENQQYVAA-GDLR--ALDTVTNVLNFIKLQKID 1878
Query: 878 --PTPVKLKFEKV 888
L E+V
Sbjct: 1879 IIELQKSLSLEEV 1891
Score = 40.8 bits (95), Expect = 0.004
Identities = 49/281 (17%), Positives = 85/281 (30%), Gaps = 90/281 (32%)
Query: 24 FSNSLPEANKMEGRAENEHMISSSESYLFT-QNKSYDSPTIVAKQTLLPLSGELEKQIIS 82
+ S A + RA+ H ++Y F+ + ++P T+ GE K+I
Sbjct: 1636 YKTS-KAAQDVWNRAD-NHF---KDTYGFSILDIVINNPV---NLTIHF-GGEKGKRI-- 1684
Query: 83 AKSSSTEGSSVVTSYIKLKCKPISRALVVEELINTDVTNILSQEPFYSNFKDITRTEITN 142
E Y + + I + E I ++ + F S ++ T+ T
Sbjct: 1685 -----REN------YSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQ 1733
Query: 143 K--FVHLEAAPVALLEEH-----RCLFSGLS--EW-------------------RQR--- 171
+ +E A L+ F+G S E+ R
Sbjct: 1734 PALTL-MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMT 1792
Query: 172 VCLEVTGDATRNVNDIMESFQHIFPKSNFIKPIAKPPTSKSVTRWLERKEAFKRNAGTRS 231
+ + V D N M IA P + + E + G R+
Sbjct: 1793 MQVAVPRDELGRSNYGM---------------IAINPGRVAASFSQEALQYVVERVGKRT 1837
Query: 232 SVSSRVEQKI----LENEQ--CSQKGIVDVKCFEESSALER 266
VE I +EN+Q + G + AL+
Sbjct: 1838 --GWLVE--IVNYNVENQQYVAA--G--------DLRALDT 1864
Score = 39.6 bits (92), Expect = 0.009
Identities = 32/193 (16%), Positives = 50/193 (25%), Gaps = 89/193 (46%)
Query: 866 GKEIANVVTNNNPTPVKLKF-----EKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGI 920
G I ++V NNP + + F +++ + Y ++ET
Sbjct: 1658 GFSILDIVI-NNPVNLTIHFGGEKGKRIRE--------NYSAMIFETIV----------- 1697
Query: 921 ETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMT-FAKEYR 979
DG KI KE E S + T F
Sbjct: 1698 -----DGKLKTEKIF----------------KEINEHSTSYTFRSEKGLLSATQFT---- 1732
Query: 980 GQAGYKPGACVPAL---SLA-----RQWVLTDPRA--------EPRVSERVPYV-IVSGA 1022
Q PAL A + L A E Y + S A
Sbjct: 1733 -Q---------PALTLMEKAAFEDLKSKGLIPADATFAGHSLGE--------YAALASLA 1774
Query: 1023 PGLPL---IKLVK 1032
+ + +++V
Sbjct: 1775 DVMSIESLVEVVF 1787
Score = 33.5 bits (76), Expect = 0.56
Identities = 27/148 (18%), Positives = 43/148 (29%), Gaps = 44/148 (29%)
Query: 990 VPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGL--PLIKLVKSPYE-LLQD----SS 1042
+ A S R L+ E + VP A L K++ P E D +
Sbjct: 1 MDAYST-RPLTLSHGSLEHVLL--VPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTP 57
Query: 1043 LRLNSEY--YITRVIIPP---------------LERCFLLLGTPVLPWYKNLPRKLHVYL 1085
L ++ Y++ ++ P E C+L G + H
Sbjct: 58 AELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLE-GNDI-----------HALA 105
Query: 1086 PSVLNE-----RKKKSTISQYFASVNCV 1108
+L E K K I Y +
Sbjct: 106 AKLLQENDTTLVKTKELIKNYITARIMA 133
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 43.7 bits (103), Expect = 4e-04
Identities = 39/264 (14%), Positives = 79/264 (29%), Gaps = 95/264 (35%)
Query: 162 FSGLSEW---RQRVCLEVTGD---------ATRNVNDIMESFQHIFPKSNFIKPIAKPPT 209
F+ + W R R +E G+ A IM FI
Sbjct: 825 FAEVGPWGSARTRWEMEAFGEFSLEGCVEMAW-----IM----------GFISYHNGNLK 869
Query: 210 SKSVTRWLERKEAFKRNAGTRSSVSSRVEQKILENEQCSQKGIVDVKCFEESSALERSMK 269
+ T W++ K + V ++ E ILE+ GI R ++
Sbjct: 870 GRPYTGWVDSKT---KEPVDDKDVKAKYETSILEH-----SGI-------------RLIE 908
Query: 270 PD--DRPSPTRKNKSTRSSFDSDMFPSSSSRESNQSPPNKD----SIHE----------- 312
P+ + +P +K + D+ P +S+E+ + ++ I E
Sbjct: 909 PELFNGYNPEKKEMIQEVIVEEDLEPFEASKETAEQFKHQHGDKVDIFEIPETGEYSVKL 968
Query: 313 ---AEITHPDCSK-SSQI------DFNPDLFKSFIRKQLETPKRRICDS---YAI----D 355
A + P + + +N + + ++ D + + +
Sbjct: 969 LKGATLYIPKALRFDRLVAGQIPTGWNAKTY-GISDDII----SQV-DPITLFVLVSVVE 1022
Query: 356 AMTPDTTGDYQMGLDNLNEVTSHV 379
A G+ + E+ +V
Sbjct: 1023 AFI-------ASGITDPYEMYKYV 1039
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.10
Identities = 8/40 (20%), Positives = 14/40 (35%), Gaps = 15/40 (37%)
Query: 956 EKQFSKIISGRISVQDMTFAKEYRGQAGYKPGACVPALSL 995
EKQ K + + + Y + PAL++
Sbjct: 18 EKQALKKLQASLKL--------------YADDS-APALAI 42
Score = 31.8 bits (71), Expect = 0.55
Identities = 8/27 (29%), Positives = 15/27 (55%), Gaps = 3/27 (11%)
Query: 723 RSLKKLQQKLTI-SP-SGVAF-VDKSI 746
++LKKLQ L + + S A + ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
Score = 31.8 bits (71), Expect = 0.71
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 259 EESS--ALERSMK---PDDRPS 275
E+ + L+ S+K D P+
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
Score = 29.1 bits (64), Expect = 5.8
Identities = 5/18 (27%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 647 SIKQ-RAHMR--APESLP 661
++K+ +A ++ A +S P
Sbjct: 21 ALKKLQASLKLYADDSAP 38
Score = 28.8 bits (63), Expect = 6.0
Identities = 9/52 (17%), Positives = 20/52 (38%), Gaps = 24/52 (46%)
Query: 766 KQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSV 817
KQ++K+ +++ LKL Y +A P + + ++
Sbjct: 19 KQALKKLQAS-------------LKL-----YADDSA------PALAIKATM 46
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 32.7 bits (74), Expect = 0.39
Identities = 13/60 (21%), Positives = 19/60 (31%)
Query: 684 YPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVD 743
P + +E + F I I ++LQQK I S + F D
Sbjct: 85 VPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFD 144
>2ahx_A P180ERBB4, receptor tyrosine-protein kinase ERBB-4; X-RAY
crystallography, neuregulins, heparin-binding, cell CY
signaling protein; HET: NAG NDG; 2.40A {Homo sapiens}
PDB: 3u2p_A*
Length = 617
Score = 32.3 bits (72), Expect = 0.99
Identities = 14/83 (16%), Positives = 25/83 (30%), Gaps = 21/83 (25%)
Query: 1106 NCVCCNQMTQNNKGVCDACLNQTQLLGTCL------YYKIQAWQRSQDQVNKVC------ 1153
+ C+ +N C C + + C+ ++ ++ C
Sbjct: 541 GLLTCHGPGPDN---CTKC-SHFKDGPNCVEKCPDGLQGANSFIFKYADPDRECHPCHPN 596
Query: 1154 --TTCVGRSTSNDCISLDCPVLY 1174
C G TS+DCI P
Sbjct: 597 CTQGCNG-PTSHDCIY--YPWTG 616
>1cja_A Protein (actin-fragmin kinase); transferase; HET: AMP; 2.90A
{Physarum polycephalum} SCOP: d.144.1.3
Length = 342
Score = 31.8 bits (71), Expect = 1.4
Identities = 12/79 (15%), Positives = 28/79 (35%)
Query: 261 SSALERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRESNQSPPNKDSIHEAEITHPDC 320
SSA+ ++P P +K + + S++ ++ N ++ + +
Sbjct: 19 SSAINSHLQPAKPKVPQKKPSKWDPPAEFKVDLSTAVSYNDIGDINWKNLQQFKGIERSE 78
Query: 321 SKSSQIDFNPDLFKSFIRK 339
+ + F FI K
Sbjct: 79 KGTEGLFFVETESGVFIVK 97
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 30.7 bits (69), Expect = 4.1
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 527 IVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTC-WWEH 572
+ N +L + +I + HE + +TC W
Sbjct: 290 NIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQ 336
>3sam_A 62 kDa protein, rifampicin resistance protein; double-barrel,
jelly-roll, scaffolding protein, structural P
rifampicin-resistance protein; 2.55A {Vaccinia virus}
PDB: 3saq_A 2ygc_A* 2ygb_A
Length = 576
Score = 30.5 bits (68), Expect = 4.7
Identities = 37/183 (20%), Positives = 66/183 (36%), Gaps = 30/183 (16%)
Query: 798 GYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTS-KWQCRVVYGDTDSMFVLAPG 856
GY N + +E V+ + + E TS + YG+TD+ F+ PG
Sbjct: 241 GYMVKNVQIKPSFIEKPRRVIGQINQPTATVTEVHAATSLSVYTKPYYGNTDNKFISYPG 300
Query: 857 KTKQEAFEIGKEIAN------VVTNNNPT--PVKLKFEKVYQPCILQTKKRYVGYMYETA 908
++ E I ++ +V++ PT P + +V + I +
Sbjct: 301 YSQDEKDYIDAYVSRLLDDLVIVSDGPPTGYPESAEIVEVPEDGI-------------VS 347
Query: 909 DQDKPIYEAKGIETVRRDGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRIS 968
QD +Y V+ D P + + L+F T+ S + + K+FS I
Sbjct: 348 IQDADVY-------VKIDNVPDNMSVYLHTNLLMFGTRKNSFIYN-ISKKFSAITGTYSD 399
Query: 969 VQD 971
Sbjct: 400 ATK 402
>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural
genomics, phosphatase, PSI-2, protein structure
initiative; HET: MSE; 1.76A {Vibrio cholerae}
Length = 195
Score = 29.1 bits (66), Expect = 6.9
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 701 RVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFV 742
R++ LG+S + G D +++ + QKL I+P ++
Sbjct: 85 RMKALGISLIY-QGQDDK---VQAYYDICQKLAIAPEQTGYI 122
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural
genomics, KDO 8-P phosphatase, structure function
project, S2F; HET: MES; 1.67A {Haemophilus influenzae
RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Length = 180
Score = 28.7 bits (65), Expect = 7.3
Identities = 7/42 (16%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 701 RVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFV 742
R+ LG+ F G ++ + L ++ ++ A++
Sbjct: 68 RIADLGIKLFF-LGKLEK---ETACFDLMKQAGVTAEQTAYI 105
>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics,
PSI-2; 1.80A {Legionella pneumophila}
Length = 191
Score = 28.7 bits (65), Expect = 7.6
Identities = 9/42 (21%), Positives = 22/42 (52%), Gaps = 4/42 (9%)
Query: 701 RVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFV 742
R+E LG++ + G +D + + L++ L ++ A++
Sbjct: 79 RMEQLGITHYY-KGQVDK---RSAYQHLKKTLGLNDDEFAYI 116
>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein
structure initiative, NYSG phosphatase; 1.80A
{Pseudomonas syringae PV} PDB: 3nrj_A
Length = 189
Score = 28.3 bits (64), Expect = 9.9
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 701 RVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFV 742
R + LG+ F G D + L KL +L + VA++
Sbjct: 79 RAKSLGIEHLF-QGREDK---LVVLDKLLAELQLGYEQVAYL 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.393
Gapped
Lambda K H
0.267 0.0518 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 17,653,164
Number of extensions: 1055573
Number of successful extensions: 1919
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1837
Number of HSP's successfully gapped: 46
Length of query: 1200
Length of database: 6,701,793
Length adjustment: 104
Effective length of query: 1096
Effective length of database: 3,798,009
Effective search space: 4162617864
Effective search space used: 4162617864
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.5 bits)