RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5921
(1200 letters)
>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon
Thermococcus gorgonarius [TaxId: 71997]}
Length = 426
Score = 195 bits (497), Expect = 6e-55
Identities = 104/471 (22%), Positives = 192/471 (40%), Gaps = 50/471 (10%)
Query: 627 RVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYP 685
VE +LR + N +A + P ++ A R + + EPE L+ + I+ LDF+SLYP
Sbjct: 5 LVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLW-ENIVYLDFRSLYP 63
Query: 686 SVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKS 745
S+II +N T GC + +V+ G F
Sbjct: 64 SIIITHNVSPDTL------------NREGCEEYDVA-------------PQVGHKFCKD- 97
Query: 746 IRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYGYTAANFS 805
G +P +L ++L+ R VK+ MK + +++L RQ +K++AN YGY
Sbjct: 98 -FPGFIPSLLGDLLEERQKVKKKMKATI-DPIEKKLLDYRQRAIKILANSFYGYY-GYAK 154
Query: 806 GRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKTKQEAFEI 865
R C E +SV + GR+ ++ I + K+ +V+Y DTD F PG + +
Sbjct: 155 ARWYCKECAESVTAWGRQYIETTIREIEE--KFGFKVLYADTDGFFATIPGADAETVKKK 212
Query: 866 GKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRR 925
KE + + P ++L++E Y+ TKK+Y + +G+E VRR
Sbjct: 213 AKEFLDYINAKLPGLLELEYEGFYKRGFFVTKKKYAVIDE------EDKITTRGLEIVRR 266
Query: 926 DGCPAVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYK 985
D + + L + + D+ V++ K+ + + + ++
Sbjct: 267 DWSEIAKETQARVLEAILKHGDVEEAVRIVKEVTEKLSKYEVPPEKLVIYEQITRDL-KD 325
Query: 986 PGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRL 1045
A P +++A++ + R + Y+++ G+ + + + +
Sbjct: 326 YKATGPHVAVAKRLAARGI--KIRPGTVISYIVLKGSG--RIGDRAIPF-DEFDPAKHKY 380
Query: 1046 NSEYYITRVIIPPLERCFLLLGTPVLPWYKNLPRKLHVYLPSVLNERKKKS 1096
++EYYI ++P +ER G + K R + K K+
Sbjct: 381 DAEYYIENQVLPAVERILRAFG-----YRKEDLRYQKTRQVGLGAWLKPKT 426
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia coli
[TaxId: 562]}
Length = 394
Score = 159 bits (403), Expect = 5e-43
Identities = 81/433 (18%), Positives = 150/433 (34%), Gaps = 77/433 (17%)
Query: 655 RAPESLP--LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFP 712
P + P +++ LY D ++VLD++SLYPS++ + + +
Sbjct: 5 VPPHASPGGYVMDSRPGLY-DSVLVLDYKSLYPSIVRTFLIDPVGLVEGMAQPDP----- 58
Query: 713 FGCIDLNVSIRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY 772
S G S LP+++ I R K+
Sbjct: 59 --------------------EHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGN-- 96
Query: 773 KSNAALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETV 832
LK+I N YG R + S+ +G + +++ T
Sbjct: 97 ----------KPLSQALKIIMNAFYGVLGTTA-CRFFDPRLASSITMRGHQIMRQ---TK 142
Query: 833 NNTSKWQCRVVYGDTDSMFVLAPGKTKQE-AFEIGKEIANVVTNNNPTPV---------K 882
V+YGDTDS FV G +E A +IG+ + V + +
Sbjct: 143 ALIEAQGYDVIYGDTDSTFVWLKGAHSEEEAAKIGRALVQHVNAWWAETLQKQRLTSALE 202
Query: 883 LKFEKVYQPCILQTKKRYVGYMYETA-----DQDKPIYEAKGIETVRRDGCPAVSKILKK 937
L++E + ++ T + + + DK KG+ETVR D P + ++
Sbjct: 203 LEYETHFCRFLMPTIRGADTGSKKRYAGLIQEGDKQRMVFKGLETVRTDWTPLAQQFQQE 262
Query: 938 SLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFAKEYRGQAGYK---PGACVPALS 994
+F + +EYV + K+++G + + + + R + Y+ P A
Sbjct: 263 LYLRIFRNEP---YQEYVRETIDKLMAGELDARLVYRKRLRRPLSEYQRNVPPHVRAARL 319
Query: 995 LARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLRLNSEYYITRV 1054
+ + + + YV + P + +SP L+ E+Y+TR
Sbjct: 320 ADEENQKRGRPLQYQNRGTIKYVWTTNGPE--PLDYQRSP----------LDYEHYLTRQ 367
Query: 1055 IIPPLERCFLLLG 1067
+ P E +
Sbjct: 368 LQPVAEGILPFIE 380
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 415
Score = 155 bits (391), Expect = 3e-41
Identities = 83/456 (18%), Positives = 163/456 (35%), Gaps = 68/456 (14%)
Query: 628 VESIMLRLSRLNNFV--------AVSPSIKQRAHMRAPESL-PLILEPESRLYTDPIIVL 678
V+++ R N++ A S +I+ A ++ ++++P + ++ I VL
Sbjct: 6 VKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIF-FNITVL 64
Query: 679 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQKLTISPSG 738
DF SLYPS+I +N + T V I+ KK + +
Sbjct: 65 DFASLYPSIIRTWNLSYET----------------------VDIQQCKKPYEVKDETGEV 102
Query: 739 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAALQRVLHARQLGLKLIANVTYG 798
+ V R GI + + D R+ + + + +N+ Q++L+ +
Sbjct: 103 LHIVCMD-RPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINATY 161
Query: 799 YTAANFSGRMPCVEVGDSVVSKGRETLQKAIETVNNTSKWQCRVVYGDTDSMFVLAPGKT 858
+ + V +SV + GR + ++ + V+YGDTDS+F+L P K
Sbjct: 162 GVFGAETFPLYAPRVAESVTALGRYVITSTVKKAR---EEGLTVLYGDTDSLFLLNPPKN 218
Query: 859 KQEAFEIGKEIANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAK 918
E I K + L+ +K Y+ K+ +Y+ D K
Sbjct: 219 SLE--NIIKW------VKTTFNLDLEVDKTYKFVAFSGLKKNYFGVYQDGKVDI-----K 265
Query: 919 GIETVRRDGCPAVSKILKKSLCLLFETKDLSVV-------KEYVEKQFSKIISGRISVQD 971
G+ +R+ V K+ + L+ + V + V+ + K+ + ++ +
Sbjct: 266 GMLVKKRNTPEFVKKVFNEVKELMISINSPNDVKEIKRKIVDVVKGSYEKLKNKGYNLDE 325
Query: 972 MTFAKEYRGQAGYKPGACVPALSLARQWVLTDPRAEPRVSERVPYVIVSGAPGLPLIKLV 1031
+ F + A Q PR + + YV V G+
Sbjct: 326 LAFKVMLSKPLDAYKKNTPQHVKAALQLRPFGVNVLPR--DIIYYVKVRSKDGVK----- 378
Query: 1032 KSPYELLQDSSLRLNSEYYITRVIIPPLERCFLLLG 1067
P +L +++E Y+ + E+ G
Sbjct: 379 --PVQL--AKVTEIDAEKYLEA-LRSTFEQILRAFG 409
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 388
Score = 118 bits (297), Expect = 4e-29
Identities = 43/346 (12%), Positives = 93/346 (26%), Gaps = 54/346 (15%)
Query: 671 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSI----RSLK 726
+V D SLYP+ + + + + + +P + +
Sbjct: 54 EIGEGMVFDVNSLYPAQMYSRLLPYGEPIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIP 113
Query: 727 KLQQKLTISPSGVAFVD---KSIRCGILPKMLQEILDTRLMVKQSM-------------- 769
+Q K + G ++ I L + E++ +
Sbjct: 114 TIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKEHYDLYNVEYISGLKFKATTGLF 173
Query: 770 KEYKSN--AALQRVLHARQLGLKLIANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQK 827
K++ A + KL+ N YG A+N + ++ R ++
Sbjct: 174 KDFIDKWTYIKTTSEGAIKQLAKLMLNSLYGKFASNPDVTGKVPYLKENGALGFRLGEEE 233
Query: 828 AIETVN-----------------NTSKWQCRVVYGDTDSMFVLAPGKTKQ-EAFEIGKEI 869
+ V R++Y DTDS+ + + K++
Sbjct: 234 TKDPVYTPMGVFITAWARYTTITAAQACYDRIIYCDTDSIHLTGTEIPDVIKDIVDPKKL 293
Query: 870 ANVVTNNNPTPVKLKFEKVYQPCILQTKKRYVGYMYETADQDKPIYEAKGIETVRRDGCP 929
E ++ +K Y+ +Y K + E +
Sbjct: 294 GY-----------WAHESTFKRAKYLRQKTYIQDIYMKEVDGKLV-EGSPDDYTDIKFSV 341
Query: 930 AVSKILKKSLCLLFETKDLSVVKEYVEKQFSKIISGRISVQDMTFA 975
+ + ++ V K + G + + D TF
Sbjct: 342 KC-AGMTDKIKKEVTFENFKVGFSRKMKPKPVQVPGGVVLVDDTFT 386
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage
RB69 [TaxId: 12353]}
Length = 528
Score = 114 bits (285), Expect = 7e-27
Identities = 75/509 (14%), Positives = 148/509 (29%), Gaps = 118/509 (23%)
Query: 662 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVS 721
+ EP Y ++ D SLYPS+I N T G + + D
Sbjct: 20 FVKEPIPNRY-KYVMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYIN--------- 69
Query: 722 IRSLKKLQQKLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKSNAAL--- 778
++ + SP+G+ + R G++P + ++ + R K M + N +
Sbjct: 70 -AVAERPSDVYSCSPNGMMYYKD--RDGVVPTEITKVFNQRKEHKGYMLAAQRNGEIIKE 126
Query: 779 -----------------------------------------------QRVLHARQLGLKL 791
+ Q+ KL
Sbjct: 127 ALHNPNLSVDEPLDVDYRFDFSDEIKEKIKKLSAKSLNEMLFRAQRTEVAGMTAQINRKL 186
Query: 792 IANVTYGYTAANFSGRMPCVEVGDSVVSKGRETLQKAIETV------NNTSKWQCRVVYG 845
+ N YG N R + ++ + G+ LQ V ++ + V+YG
Sbjct: 187 LINSLYGAL-GNVWFRYYDLRNATAITTFGQMALQWIERKVNEYLNEVCGTEGEAFVLYG 245
Query: 846 DTDSMFVLAPGKTKQEAFEIGKEIANVVTNNN---------------------------- 877
DTDS++V A + ++ + V +
Sbjct: 246 DTDSIYVSADKIIDKVGESKFRDTNHWVDFLDKFARERMEPAIDRGFREMCEYMNNKQHL 305
Query: 878 -----PTPVKLKFEKVYQPCILQTKKRYVGYMYETADQ--DKPIYEAKGIETVRRDGCPA 930
KKRY +++ +P + G+ET + A
Sbjct: 306 MFMDREAIAGPPLGSKGIGGFWTGKKRYALNVWDMEGTRYAEPKLKIMGLETQKSSTPKA 365
Query: 931 VSKILKKSLCLLFETKDLSVVK---EYVEKQFSKIISGRISVQDMTFAKEYRGQAGYKPG 987
V K LK+ + + + + S+ + E+ ++ SV +Y P
Sbjct: 366 VQKALKECIRRMLQEGEESLQEYFKEFEKEFRQLNYISIASVSSANNIAKYDVGGFPGPK 425
Query: 988 --ACVPALSLARQWVLTDPRAEPRVS-ERVPYVIVSGAPGLPLIKLVKSPYELLQDSSLR 1044
+ + + + + A V E+V + + K + P ++
Sbjct: 426 CPFHIRGILTYNRAIKGNIDAPQVVEGEKVYVLPLRE-GNPFGDKCIAWPSGTEITDLIK 484
Query: 1045 LNSEYYI------TRVIIPPLERCFLLLG 1067
+ +++ + I PLE
Sbjct: 485 DDVLHWMDYTVLLEKTFIKPLEGFTSAAK 513
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA
polymerases {Escherichia coli [TaxId: 562]}
Length = 388
Score = 110 bits (277), Expect = 2e-26
Identities = 43/253 (16%), Positives = 87/253 (34%), Gaps = 12/253 (4%)
Query: 399 LKPDPAYD-EVKAIFYYLYTCPPEEDRKVGI------ILIGQESELPEVRTKPIQMHFVS 451
LKP P Y +K + + T E +G+ I+ E + + ++ +V+
Sbjct: 139 LKPHPDYRPPLKWVSIDIETTRHGELYCIGLEGCGQRIVYMLGPENGDASSLDFELEYVA 198
Query: 452 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 511
+ +L +DPD++IG+ + L + L L L R +
Sbjct: 199 SRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPL--RLGRDNSELEWRE 256
Query: 512 SRDEVKNTQLQMPGRIVINLWRLLRHE-VNLQSYTFENIMYHVLHERIPLHSWKLLTCWW 570
+ Q GR++I+ L+ N S++ E + +L E + +
Sbjct: 257 HGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEI 316
Query: 571 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 630
+ R K + L + ++ + + + E A + G+ GS
Sbjct: 317 DRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNGLPVDRHG--GSVAAFGH 374
Query: 631 IMLRLSRLNNFVA 643
+ +VA
Sbjct: 375 LYFPRMHRAGYVA 387
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 94.5 bits (234), Expect = 3e-21
Identities = 40/174 (22%), Positives = 76/174 (43%), Gaps = 9/174 (5%)
Query: 447 MHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEV 506
+ VS EKE+ F++ V++ DPD+LI Y + + YL +R LG+ L R
Sbjct: 181 VDVVSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFI--LGREGSE 238
Query: 507 EKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLL 566
K D +++ GRI +L+ ++R +NL +YT E + + + + +
Sbjct: 239 PKIQRMGD---RFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKVYAEEI 295
Query: 567 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVL 620
WE L + + + L ++ ++++RL G ++V
Sbjct: 296 AQAWETGEGLER--VARYSMEDAKVTYELGKEF--FPMEAQLSRLVGQSLWDVS 345
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA
polymerases {Bacteriophage T4 [TaxId: 10665]}
Length = 372
Score = 76.5 bits (187), Expect = 3e-15
Identities = 34/272 (12%), Positives = 81/272 (29%), Gaps = 28/272 (10%)
Query: 383 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLY----------------TCPPEEDRKV 426
++ V +I P A E+ AI +Y + + +
Sbjct: 104 FVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDSIDDRFYVFDLLNSMYGSVSKWDAKLA 163
Query: 427 GIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYL- 485
+ E+P+ + NE+++ +I Q P I G+ IE Y+
Sbjct: 164 AKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIM 223
Query: 486 --LERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS 543
++ + + + + + + NL S
Sbjct: 224 NRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYKKFAFTNLPS 283
Query: 544 YTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIG 603
++ E++ H + + + + + + +I V + + + FI
Sbjct: 284 FSLESVAQHETKKGKLPYDGPINKLRETNHQRY-----ISYNIIDVESVQAIDKIRGFID 338
Query: 604 RTSEMARLFGIQFYEVLSRGSQFRV-ESIMLR 634
M+ + F V+ S + ++I+
Sbjct: 339 LVLSMSYYAKMPFSGVM---SPIKTWDAIIFN 367
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA
polymerases {Bacteriophage RB69 [TaxId: 12353]}
Length = 375
Score = 58.0 bits (139), Expect = 3e-09
Identities = 37/220 (16%), Positives = 76/220 (34%), Gaps = 12/220 (5%)
Query: 419 PPEEDRKVGIILIGQESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIE 478
+ E+P I NEKEL ++ +Q P IL G+ +E
Sbjct: 160 EEWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVE 219
Query: 479 TLSWGYLLERGY-VLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR- 536
+ Y+ R + G + + LS + + + + G V++ L +
Sbjct: 220 SFDIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDLYKK 279
Query: 537 -HEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRL 595
N SY+ + I L+ + + + + + +I V ++++
Sbjct: 280 FSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESNHQRY-----ISYNIIDVYRVLQI 334
Query: 596 IEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV-ESIMLR 634
+ FI + +M IQ V S + ++I+
Sbjct: 335 DAKRQFINLSLDMGYYAKIQIQSVF---SPIKTWDAIIFN 371
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Length = 410
Score = 53.2 bits (127), Expect = 1e-07
Identities = 26/175 (14%), Positives = 54/175 (30%), Gaps = 10/175 (5%)
Query: 384 LTVLAVEIHAISRALLK-PDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRT 442
+ +A++I + + PD E I L + +KV ++L + V+
Sbjct: 186 IKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALAGS--DGLKKV-LVLNRNDVNEGSVKL 242
Query: 443 KPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 502
I + + E EL F + + + I++ + + Y+ R L L
Sbjct: 243 DGISVERFNTEYELLGRFFDILLE--YPIVLTFNGDDFDLPYIYFRA----LKLGYFPEE 296
Query: 503 ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 557
I + + + R E Y + + +L
Sbjct: 297 IPIDVAGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAVAKALLGTS 351
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 30.6 bits (67), Expect = 1.4
Identities = 13/49 (26%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 623 GSQF-RVE-SIMLR--LSRLNNF-VAVSPSIKQRAHMRAPESLPLILEP 666
G R+E I + R + +P R ESL +IL+P
Sbjct: 352 GVSLARLEAEIAVGTIFRRFPEMKLKETPVFGYHPAFRNIESLNVILKP 400
>d2dtge6 g.3.9.1 (E:157-311) Insulin receptor {Human (Homo sapiens)
[TaxId: 9606]}
Length = 155
Score = 29.3 bits (64), Expect = 1.9
Identities = 9/84 (10%), Positives = 18/84 (21%), Gaps = 5/84 (5%)
Query: 1100 QYFASVNCVCCNQM---TQNNKGVCDACLNQTQLL--GTCLYYKIQAWQRSQDQVNKVCT 1154
+ + +CC+ + C+ G C+ + QD +
Sbjct: 42 SHGCTAEGLCCHSECLGNCSQPDDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFS 101
Query: 1155 TCVGRSTSNDCISLDCPVLYRKTQ 1178
C Y
Sbjct: 102 FCQDLHHKCKNSRRQGCHQYVIHN 125
>d1xr7a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 16,
HRV-16 [TaxId: 31708]}
Length = 460
Score = 30.0 bits (67), Expect = 2.2
Identities = 29/150 (19%), Positives = 53/150 (35%), Gaps = 28/150 (18%)
Query: 854 APGKTK------QEAFEIGKEIANVVTNNNP------TPVKLKFEKVYQPCIL------- 894
P KTK + F KE A V+T +P K C L
Sbjct: 19 TPTKTKLQPSVFYDIFPGSKEPA-VLTEKDPRLKVDFDSALFSKYKGNTECSLNEHIQVA 77
Query: 895 ----QTKKRYVGYMYETADQDKPIYEAKGIETVRRD---GCPAVSKILKKSLCLLFETKD 947
+ + + + ++ G+E + + G P V+ +KK + +TKD
Sbjct: 78 VAHYSAQLATLDIDPQPIAMEDSVFGMDGLEALDLNTSAGYPYVTLGIKKKDLINNKTKD 137
Query: 948 LSVVKEYVEKQFSKIISGRISVQDMTFAKE 977
+S +K ++K + ++D K+
Sbjct: 138 ISKLKLALDKYGVDLPMITF-LKDELRKKD 166
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 27.8 bits (61), Expect = 5.5
Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 537 HEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLI 596
E + N + L + + + G +
Sbjct: 63 SENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRAL--DRDGKPFEL 120
Query: 597 EQLDFIGRTS--EMARLFGIQFYEVLSRGSQFRVESIMLRLSRL 638
E + EM L G F + LS Q R+ + +L RL
Sbjct: 121 EADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164
>d1r0va3 d.75.1.1 (A:140-214) Dimeric tRNA splicing endonuclease,
domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId:
2234]}
Length = 75
Score = 26.2 bits (57), Expect = 6.3
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 7/78 (8%)
Query: 433 QESELPEVRTKPIQMHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL 492
Q+ ELPE+ + ++ + E+FS + + D++ IE+L YLL+ G +
Sbjct: 3 QKEELPEIAGVLSDEYVITKQTEIFSRYFYGSEK--GDLVTLSLIESL---YLLDLGKLN 57
Query: 493 GLNLNQE--LSRITEVEK 508
LN ++E + R EVE+
Sbjct: 58 LLNADREELVKRAREVER 75
>d1kkga_ d.52.7.1 (A:) Ribosome-binding factor A, RbfA {Escherichia
coli [TaxId: 562]}
Length = 108
Score = 26.8 bits (59), Expect = 6.5
Identities = 8/47 (17%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 103 KPISRALVVEELINTDVTNILSQE---PFYSNFKDITRTEITNKFVH 146
K R V + + ++ IL +E P ++ E++ +
Sbjct: 3 KEFGRPQRVAQEMQKEIALILQREIKDPRLGMMTTVSGVEMSRDLAY 49
>d1xr5a_ e.8.1.4 (A:) Viral RNA polymerase {Human rhinovirus 14,
HRV-14 [TaxId: 12131]}
Length = 460
Score = 28.1 bits (62), Expect = 7.2
Identities = 31/131 (23%), Positives = 49/131 (37%), Gaps = 27/131 (20%)
Query: 854 APGKTK------QEAFEIGKEIANVVTNNNP----TPVKLKFEKVYQP-------CILQT 896
P K+K + F KE A V+++N+P + F K +L
Sbjct: 19 TPTKSKLHPSVFYDVFPGDKEPA-VLSDNDPRLEVKLTESLFSKYKGNVNTEPTENMLVA 77
Query: 897 KKRYVGYMYET------ADQDKPIYEAKGIETVRRD---GCPAVSKILKKSLCLLFETKD 947
Y G + + +Y G+E + G P VS +KK L ET+D
Sbjct: 78 VDHYAGQLLSLDIPTSELTLKEALYGVDGLEPIDITTSAGFPYVSLGIKKRDILNKETQD 137
Query: 948 LSVVKEYVEKQ 958
+K Y++K
Sbjct: 138 TEKMKFYLDKY 148
>d1s78a4 g.3.9.1 (A:489-564) Protooncoprotein Her2 extracellular
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 25.9 bits (56), Expect = 9.4
Identities = 11/62 (17%), Positives = 20/62 (32%), Gaps = 2/62 (3%)
Query: 1106 NCVCCNQMTQNNKGVCDACLNQTQLLGTCLYYKIQAWQRSQDQVNKVCTTCVGRSTSNDC 1165
CV C+Q + + V + + Q N TC G ++ C
Sbjct: 17 QCVNCSQFLRGQECVEECRVLQGLPREYVNARHCLPCHPECQPQNG-SVTCFG-PEADQC 74
Query: 1166 IS 1167
++
Sbjct: 75 VA 76
>d2f22a1 a.213.1.2 (A:1-141) Hypothetical protein BH3987 {Bacillus
halodurans [TaxId: 86665]}
Length = 141
Score = 27.0 bits (59), Expect = 9.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 503 ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLL 535
I V R+ RD +K ++ PGR+ + RLL
Sbjct: 41 IHIVRVRDVYRDGLKTGSIKFPGRLASDEHRLL 73
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.133 0.393
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,347,233
Number of extensions: 206122
Number of successful extensions: 508
Number of sequences better than 10.0: 1
Number of HSP's gapped: 486
Number of HSP's successfully gapped: 25
Length of query: 1200
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1104
Effective length of database: 1,089,516
Effective search space: 1202825664
Effective search space used: 1202825664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.7 bits)