BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5922
(323 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
Carboxyatractyloside
pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
Length = 297
Score = 60.8 bits (146), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 39/159 (24%), Positives = 73/159 (45%), Gaps = 12/159 (7%)
Query: 21 HLLAGASAGIMEHIIVYPLDTVKTQM-----QSLTRKSYKGIIESLQHMMTKEGILRPIR 75
+L +G +AG VYPLD +T++ + ++ + G+ + + +G+ +
Sbjct: 115 NLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQ 174
Query: 76 GLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNENISYGTAGVIATILHDAIHVPTDVV 135
G NV + G A YF Y+ K + + V+ +S+ A + T + + P D V
Sbjct: 175 GFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTV-TAVAGLVSYPFDTV 233
Query: 136 KQRLQMY------DSPYKSVIDCILRVHAEEGLAAFFRS 168
++R+ M D Y +DC ++ +EG AFF+
Sbjct: 234 RRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKG 272
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 69/324 (21%), Positives = 108/324 (33%), Gaps = 62/324 (19%)
Query: 21 HLLAGASAGIMEHIIVYPLDTVKTQMQSL-------TRKSYKGIIESLQHMMTKEGILRP 73
LAG A + V P++ VK +Q K YKGII+ + + ++G L
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 74 IRGLNVVIAGTAPAHALYFS---SY------------EFTKYFVSNNFKVNENISYGTAG 118
RG + P AL F+ Y +F +YF N S G AG
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGN------LASGGAAG 123
Query: 119 VIATILHDAIHVPTDVVKQRLQMYDSPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIP 178
AT L P D + RL A+ G A R FT
Sbjct: 124 --ATSL--CFVYPLDFARTRL-----------------AADVGKGAAQREFTG------- 155
Query: 179 FHTSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLSNPNREYHALTHIX 238
+ + +GL ++ F + I + ++F Y+ A+ + + H +
Sbjct: 156 -LGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWM 214
Query: 239 XXXXXXXXXXXXTTPLDVCKTFLNTQPTGQAV----SGLRNAITSVYALGGLAGFFKGTK 294
+ P D + + Q + +G + + G FFKG
Sbjct: 215 IAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAW 274
Query: 295 ARVLYTMPSTAICWSTYETFKHFL 318
+ VL M A Y+ K F+
Sbjct: 275 SNVLRGM-GGAFVLVLYDEIKKFV 297
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/162 (25%), Positives = 72/162 (44%), Gaps = 6/162 (3%)
Query: 14 ESKQVGIHLLAGASAGIMEHIIVYPLDTVKTQMQSLTR----KSYKGIIESLQHMMTKEG 69
E +G LLAG++ G + + P D VK + Q+ R + Y+ +E+ + + +EG
Sbjct: 100 EHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEG 159
Query: 70 ILRPIRGLNVVIAGTAPAHALYFSSYEFTK-YFVSNNFKVNENISYGTAGVIATILHDAI 128
I +G + +A A + +Y+ K + N ++ + T+ A I
Sbjct: 160 IRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGAGFCTTVI 219
Query: 129 HVPTDVVKQR-LQMYDSPYKSVIDCILRVHAEEGLAAFFRSF 169
P DVVK R + Y S C L + +EG AF++ F
Sbjct: 220 ASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGF 261
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/186 (24%), Positives = 79/186 (42%), Gaps = 25/186 (13%)
Query: 20 IHLLAGASAGIMEHIIVYPLDTVKTQM------QSLTRKS----YKGIIESLQHMMTKEG 69
+ L +A + +I +PLDT K ++ Q L R + Y+G++ ++ M+ EG
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 70 ILRPIRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNF--KVNENISYGT---AGVIATIL 124
P N ++AG + F+S Y F K +E+ G+ AG L
Sbjct: 63 ---PRSLYNGLVAGL--QRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGAL 117
Query: 125 HDAIHVPTDVVKQRLQMY-----DSPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIPF 179
A+ PTDVVK R Q Y+S ++ + EEG+ ++ + + N
Sbjct: 118 AVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIV 177
Query: 180 HTSHFI 185
+ + +
Sbjct: 178 NCAELV 183
>pdb|1Z6O|M Chain M, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|N Chain N, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|O Chain O, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|P Chain P, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|Q Chain Q, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|R Chain R, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|S Chain S, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|T Chain T, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|U Chain U, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|V Chain V, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|W Chain W, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
pdb|1Z6O|X Chain X, Crystal Structure Of Trichoplusia Ni Secreted Ferritin
Length = 191
Score = 31.6 bits (70), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 13/91 (14%)
Query: 45 QMQSLTRKSYKGIIESLQHMMTKE-GILRPIRGLNVVIAGTAPAHALYFSSYEFTKY--- 100
Q++ TR S+KG +E+L+H ++ E + + IR NV+ A + F+ Y Y
Sbjct: 93 QVRPPTRSSWKGGVEALEHALSMESDVTKSIR--NVIKACEDDSE---FNDYHLVDYLTG 147
Query: 101 -FVSNNFKVNENISYGTAGVIATIL--HDAI 128
F+ +K +++ G A + ++ H+A+
Sbjct: 148 DFLEEQYKGQRDLA-GKASTLKKLMDRHEAL 177
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.134 0.396
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,539,745
Number of Sequences: 62578
Number of extensions: 316231
Number of successful extensions: 687
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 676
Number of HSP's gapped (non-prelim): 7
length of query: 323
length of database: 14,973,337
effective HSP length: 99
effective length of query: 224
effective length of database: 8,778,115
effective search space: 1966297760
effective search space used: 1966297760
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 51 (24.3 bits)