Query psy5922
Match_columns 323
No_of_seqs 138 out of 1917
Neff 8.8
Searched_HMMs 29240
Date Fri Aug 16 21:54:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5922.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5922hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 4.8E-55 1.6E-59 398.3 20.7 269 20-320 3-288 (303)
2 1okc_A ADP, ATP carrier protei 100.0 2.2E-54 7.4E-59 393.0 24.2 272 15-318 4-297 (297)
3 1okc_A ADP, ATP carrier protei 100.0 1.4E-34 4.8E-39 262.4 13.8 182 109-321 5-204 (297)
4 2lck_A Mitochondrial uncouplin 100.0 2.1E-34 7E-39 262.1 12.8 178 113-321 3-195 (303)
5 3tgu_G UQCRQ, mitochondrial ub 24.7 27 0.00091 24.2 1.2 35 285-319 33-67 (81)
6 3cx5_H Cytochrome B-C1 complex 16.9 61 0.0021 23.0 1.7 36 284-319 42-77 (93)
7 1pp9_G Ubiquinol-cytochrome C 15.9 45 0.0015 23.0 0.8 35 285-319 33-67 (81)
8 2acm_A Mucin-1; auto-catalytic 14.0 40 0.0014 21.7 0.1 20 271-290 40-59 (66)
9 3f2e_A SIRV coat protein; four 13.5 1.2E+02 0.0042 20.5 2.4 34 139-172 1-38 (100)
10 3vjj_A P9-1; 3.00A {Rice black 11.2 1.7E+02 0.0059 25.1 3.2 36 245-286 273-308 (368)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=4.8e-55 Score=398.35 Aligned_cols=269 Identities=22% Similarity=0.319 Sum_probs=248.4
Q ss_pred HHHHHHHHHHHhHHhhcccHHHHHHHHhcccc----------CCCCcHHHHHHHHHHhhcccccccchhhHHhchhhhhh
Q psy5922 20 IHLLAGASAGIMEHIIVYPLDTVKTQMQSLTR----------KSYKGIIESLQHMMTKEGILRPIRGLNVVIAGTAPAHA 89 (323)
Q Consensus 20 ~~~l~g~~a~~~~~~i~~Pld~ik~~~q~~~~----------~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~~~ 89 (323)
.++++|++|++++.+++||||+||+|+|++.. ..|++.++++++++++||+++||||+.+++++.++..+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~ 82 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHH
Confidence 47899999999999999999999999999754 25789999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHhhcccccCchhhhhhHHHHHHHHHhhhcccHHHHHHHHHhcCC-----CCCcHHHHHHHHHHhhchhh
Q psy5922 90 LYFSSYEFTKYFVSNNFKVNENISYGTAGVIATILHDAIHVPTDVVKQRLQMYDS-----PYKSVIDCILRVHAEEGLAA 164 (323)
Q Consensus 90 ~~f~~~~~~~~~~~~~~~~~~~~~~~~ag~~a~~~~~~~~~Pld~vk~r~q~~~~-----~~~~~~~~~~~i~~~~G~~~ 164 (323)
++|.+||.+++.+.+.....+....+++|++|++++.++++|+|++|+|+|++.. +|++.++++++|+++||++|
T Consensus 83 i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~g 162 (303)
T 2lck_A 83 VRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRG 162 (303)
T ss_dssp HTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhh
Confidence 9999999999988765334677889999999999999999999999999999863 68999999999999999999
Q ss_pred hhhhhchhhhcccCccchhhHHHhhhhhHHHHHhhhhhhhhcccCccchhHHhHHHhhhcCCCCC--CchhHHHHHHHHH
Q psy5922 165 FFRSFTTQLVMNIPFHTSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLSNPNR--EYHALTHIVSGGV 242 (323)
Q Consensus 165 lyrG~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~--~~~~~~~~~~g~~ 242 (323)
||||+ .+++++++|+.+++|.+||.+++.+.+.. ..+....+++|++
T Consensus 163 lyrG~-------------------------------~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~~ 211 (303)
T 2lck_A 163 LWKGT-------------------------------SPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFG 211 (303)
T ss_dssp HHHHH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHHH
T ss_pred hhCCc-------------------------------cHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 99999 99999999999999999999999876543 4556788999999
Q ss_pred HHHHHHhhcchhhHHHHHHhcCCCCCccccHHHHHHHHHHhcCccccccchhhhhhcccchhhHHHHhHHHHHhhhcc
Q psy5922 243 AGGVAAAVTTPLDVCKTFLNTQPTGQAVSGLRNAITSVYALGGLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLHE 320 (323)
Q Consensus 243 ag~~~~~it~P~d~vktr~q~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~i~~~~~e~~~~~~~~ 320 (323)
||++++++++|+|+||+|||.+... .|+++++|+++|+++||++|||||+.++++|.+|.++++|.+||.+|+.+.+
T Consensus 212 ag~~~~~~~~P~dvvktrlq~~~~~-~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~k~~l~~ 288 (303)
T 2lck_A 212 AGFCTTVIASPVDVVKTRYMNSALG-QYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMA 288 (303)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSS-SCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHcCHHHHHHHHHHhcccc-ccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998653 5999999999999999999999999999999999999999999999998764
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=2.2e-54 Score=392.95 Aligned_cols=272 Identities=21% Similarity=0.291 Sum_probs=241.7
Q ss_pred chhhHHHHHHHHHHHHhHHhhcccHHHHHHHHhcccc-------CCCCcHHHHHHHHHHhhcccccccchhhHHhchhhh
Q psy5922 15 SKQVGIHLLAGASAGIMEHIIVYPLDTVKTQMQSLTR-------KSYKGIIESLQHMMTKEGILRPIRGLNVVIAGTAPA 87 (323)
Q Consensus 15 ~~~~~~~~l~g~~a~~~~~~i~~Pld~ik~~~q~~~~-------~~~~~~~~~~~~i~~~~G~~~ly~G~~~~~~~~~~~ 87 (323)
..+.+.++++|++|++++.+++||+|+||+|+|++.. ..|++.++++++++++||++|||||+.+++++.++.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~ 83 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPT 83 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHH
Confidence 4567889999999999999999999999999999753 357899999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHHhhcc-ccc----CchhhhhhHHHHHHHHHhhhcccHHHHHHHHHhcC------CCCCcHHHHHHHH
Q psy5922 88 HALYFSSYEFTKYFVSNN-FKV----NENISYGTAGVIATILHDAIHVPTDVVKQRLQMYD------SPYKSVIDCILRV 156 (323)
Q Consensus 88 ~~~~f~~~~~~~~~~~~~-~~~----~~~~~~~~ag~~a~~~~~~~~~Pld~vk~r~q~~~------~~~~~~~~~~~~i 156 (323)
.+++|.+||.+++.+... +.. .+....+++|++|++++.++++|+|++|+|+|++. .+|+++++++++|
T Consensus 84 ~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i 163 (297)
T 1okc_A 84 QALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKI 163 (297)
T ss_dssp HHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHH
Confidence 999999999999854332 221 13467889999999999999999999999999974 3689999999999
Q ss_pred HHhhchhhhhhhhchhhhcccCccchhhHHHhhhhhHHHHHhhhhhhhhcccCccchhHHhHHHhhhcCCCCCCchhHHH
Q psy5922 157 HAEEGLAAFFRSFTTQLVMNIPFHTSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLSNPNREYHALTH 236 (323)
Q Consensus 157 ~~~~G~~~lyrG~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ye~~~~~~~~~~~~~~~~~ 236 (323)
+++||++|||||+ .+++++++|+.+++|.+||.+++.+.+....+....
T Consensus 164 ~~~eG~~glyrG~-------------------------------~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~ 212 (297)
T 1okc_A 164 FKSDGLRGLYQGF-------------------------------NVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVS 212 (297)
T ss_dssp HHHHCHHHHTTTH-------------------------------HHHHHHHHHHHHHHHHHHHHHHHSSCGGGCSCHHHH
T ss_pred HHhccHHHhcCCc-------------------------------hHHHHHHHHHHHHHHHHHHHHHHHhccCCCccHHHH
Confidence 9999999999999 999999999999999999999998766555667788
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHhcCCCC----CccccHHHHHHHHHHhcCccccccchhhhhhcccchhhHHHHhHH
Q psy5922 237 IVSGGVAGGVAAAVTTPLDVCKTFLNTQPTG----QAVSGLRNAITSVYALGGLAGFFKGTKARVLYTMPSTAICWSTYE 312 (323)
Q Consensus 237 ~~~g~~ag~~~~~it~P~d~vktr~q~~~~~----~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~i~~~~~e 312 (323)
+++|++||++++++++|+|+||+|||.+... ..|+++++|+++|+++||++|||||+.++++|. +.++++|.+||
T Consensus 213 ~~~g~~ag~~a~~~t~P~dvvktr~q~~~~~~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~-~~~~~~f~~ye 291 (297)
T 1okc_A 213 WMIAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRG-MGGAFVLVLYD 291 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCCGGGCSCSSHHHHHHHHHHHHCGGGGGTTHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHcCcCeEecchHHHHHhh-ccceeeehHHH
Confidence 9999999999999999999999999998642 268999999999999999999999999999996 57899999999
Q ss_pred HHHhhh
Q psy5922 313 TFKHFL 318 (323)
Q Consensus 313 ~~~~~~ 318 (323)
.+|+.+
T Consensus 292 ~~k~~l 297 (297)
T 1okc_A 292 EIKKFV 297 (297)
T ss_dssp TC----
T ss_pred HHHhhC
Confidence 998764
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=100.00 E-value=1.4e-34 Score=262.45 Aligned_cols=182 Identities=25% Similarity=0.398 Sum_probs=162.9
Q ss_pred CchhhhhhHHHHHHHHHhhhcccHHHHHHHHHhcC--------CCCCcHHHHHHHHHHhhchhhhhhhhchhhhcccCcc
Q psy5922 109 NENISYGTAGVIATILHDAIHVPTDVVKQRLQMYD--------SPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIPFH 180 (323)
Q Consensus 109 ~~~~~~~~ag~~a~~~~~~~~~Pld~vk~r~q~~~--------~~~~~~~~~~~~i~~~~G~~~lyrG~~~~i~~~~~~~ 180 (323)
.+.+..+++|++|++++.++++|+|++|+|+|++. .+|+++++++++|+++||++|||||+
T Consensus 5 ~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~----------- 73 (297)
T 1okc_A 5 LSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGN----------- 73 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTT-----------
T ss_pred HHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheeccc-----------
Confidence 45678899999999999999999999999999974 26899999999999999999999999
Q ss_pred chhhHHHhhhhhHHHHHhhhhhhhhcccCccchhHHhHHHhhhc-CCCCC---C--chhHHHHHHHHHHHHHHHhhcchh
Q psy5922 181 TSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNL-SNPNR---E--YHALTHIVSGGVAGGVAAAVTTPL 254 (323)
Q Consensus 181 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ye~~~~~-~~~~~---~--~~~~~~~~~g~~ag~~~~~it~P~ 254 (323)
.+++++++|..+++|.+||.+++. ..+.. . ......+++|++||++++++++|+
T Consensus 74 --------------------~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pl 133 (297)
T 1okc_A 74 --------------------LANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL 133 (297)
T ss_dssp --------------------HHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --------------------HHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHHHHHHHHHHHHHHHHhCcH
Confidence 999999999999999999999984 32211 1 234678999999999999999999
Q ss_pred hHHHHHHhcCCC----CCccccHHHHHHHHHHhcCccccccchhhhhhcccchhhHHHHhHHHHHhhhccc
Q psy5922 255 DVCKTFLNTQPT----GQAVSGLRNAITSVYALGGLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLHEK 321 (323)
Q Consensus 255 d~vktr~q~~~~----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~i~~~~~e~~~~~~~~~ 321 (323)
|+||+|||++.. ...|+++++|+++|+++||++|||||+.++++|.+|..++.|.+||.+|+.+.+.
T Consensus 134 d~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~ 204 (297)
T 1okc_A 134 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP 204 (297)
T ss_dssp HHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG
T ss_pred HHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 999999999853 2368999999999999999999999999999999999999999999999988643
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=100.00 E-value=2.1e-34 Score=262.11 Aligned_cols=178 Identities=22% Similarity=0.331 Sum_probs=163.5
Q ss_pred hhhhHHHHHHHHHhhhcccHHHHHHHHHhcCC-----------CCCcHHHHHHHHHHhhchhhhhhhhchhhhcccCccc
Q psy5922 113 SYGTAGVIATILHDAIHVPTDVVKQRLQMYDS-----------PYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIPFHT 181 (323)
Q Consensus 113 ~~~~ag~~a~~~~~~~~~Pld~vk~r~q~~~~-----------~~~~~~~~~~~i~~~~G~~~lyrG~~~~i~~~~~~~~ 181 (323)
..+++|++|++++.++++|+|++|+|+|++.. +|++.++++++|+++||+++||||+
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~------------ 70 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGL------------ 70 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSH------------
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCC------------
Confidence 46789999999999999999999999999753 6899999999999999999999999
Q ss_pred hhhHHHhhhhhHHHHHhhhhhhhhcccCccchhHHhHHHhhhcCCCC-CCchhHHHHHHHHHHHHHHHhhcchhhHHHHH
Q psy5922 182 SHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLSNPN-REYHALTHIVSGGVAGGVAAAVTTPLDVCKTF 260 (323)
Q Consensus 182 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ye~~~~~~~~~-~~~~~~~~~~~g~~ag~~~~~it~P~d~vktr 260 (323)
.+++++++|..+++|.+||.+++.+.+. ...+....+++|.+||++++++++|+|+||+|
T Consensus 71 -------------------~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vktr 131 (303)
T 2lck_A 71 -------------------VAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVR 131 (303)
T ss_dssp -------------------HHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHHHHHHHcCcHHHHHHH
Confidence 9999999999999999999999876543 34567789999999999999999999999999
Q ss_pred HhcCCC---CCccccHHHHHHHHHHhcCccccccchhhhhhcccchhhHHHHhHHHHHhhhccc
Q psy5922 261 LNTQPT---GQAVSGLRNAITSVYALGGLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLHEK 321 (323)
Q Consensus 261 ~q~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~~~~~~~i~~~~~e~~~~~~~~~ 321 (323)
||++.. ...|+++++++++|+++||++|||||+.++++|.+|..++.|.+||.+|+.+.+.
T Consensus 132 lq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~ 195 (303)
T 2lck_A 132 FQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKA 195 (303)
T ss_dssp HHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTT
T ss_pred HhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 999864 3378999999999999999999999999999999999999999999999988653
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=24.74 E-value=27 Score=24.18 Aligned_cols=35 Identities=11% Similarity=0.136 Sum_probs=27.2
Q ss_pred CccccccchhhhhhcccchhhHHHHhHHHHHhhhc
Q psy5922 285 GLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLH 319 (323)
Q Consensus 285 G~~gly~G~~~~~~~~~~~~~i~~~~~e~~~~~~~ 319 (323)
|+...+|-+...++.++|..++.+.+|++.++.-+
T Consensus 33 ~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne 67 (81)
T 3tgu_G 33 ALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFE 67 (81)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHH
Confidence 44445555667788899999999999999987654
No 6
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=16.94 E-value=61 Score=22.99 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=30.2
Q ss_pred cCccccccchhhhhhcccchhhHHHHhHHHHHhhhc
Q psy5922 284 GGLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLH 319 (323)
Q Consensus 284 ~G~~gly~G~~~~~~~~~~~~~i~~~~~e~~~~~~~ 319 (323)
.|+...+|-+..+++.++|..++.+.+|++.++..+
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e 77 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNE 77 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHH
Confidence 467777788888889999999999999999987654
No 7
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=15.93 E-value=45 Score=23.01 Aligned_cols=35 Identities=17% Similarity=0.278 Sum_probs=28.3
Q ss_pred CccccccchhhhhhcccchhhHHHHhHHHHHhhhc
Q psy5922 285 GLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLH 319 (323)
Q Consensus 285 G~~gly~G~~~~~~~~~~~~~i~~~~~e~~~~~~~ 319 (323)
|+...+|-+.-..+.++|..++++.+|++.++.-+
T Consensus 33 ~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e 67 (81)
T 1pp9_G 33 GIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFE 67 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHH
Confidence 55556667777888999999999999999987654
No 8
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=14.04 E-value=40 Score=21.67 Aligned_cols=20 Identities=20% Similarity=0.522 Sum_probs=17.1
Q ss_pred ccHHHHHHHHHHhcCccccc
Q psy5922 271 SGLRNAITSVYALGGLAGFF 290 (323)
Q Consensus 271 ~~~~~~~~~i~~~~G~~gly 290 (323)
+++...+.+||+++++-||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 57888999999999988876
No 9
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=13.53 E-value=1.2e+02 Score=20.49 Aligned_cols=34 Identities=18% Similarity=0.363 Sum_probs=20.1
Q ss_pred HHhcCCCCCcHHHHHHHHHHhhch----hhhhhhhchh
Q psy5922 139 LQMYDSPYKSVIDCILRVHAEEGL----AAFFRSFTTQ 172 (323)
Q Consensus 139 ~q~~~~~~~~~~~~~~~i~~~~G~----~~lyrG~~~~ 172 (323)
||.+-++|.++-+-...++.+-|+ +..|.|++..
T Consensus 1 mqtnvpkftsvne~vsavltqygvtgpnraiyqgfglk 38 (100)
T 3f2e_A 1 MQTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLK 38 (100)
T ss_dssp -------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHH
T ss_pred CCCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHH
Confidence 566677888888888888888886 4578888433
No 10
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=11.21 E-value=1.7e+02 Score=25.11 Aligned_cols=36 Identities=22% Similarity=0.190 Sum_probs=26.3
Q ss_pred HHHHhhcchhhHHHHHHhcCCCCCccccHHHHHHHHHHhcCc
Q psy5922 245 GVAAAVTTPLDVCKTFLNTQPTGQAVSGLRNAITSVYALGGL 286 (323)
Q Consensus 245 ~~~~~it~P~d~vktr~q~~~~~~~~~~~~~~~~~i~~~~G~ 286 (323)
-++++=-||||.+|-.++..- +....+.+.++++|+
T Consensus 273 qLaTFdnypfdllRfqL~Sli------stp~~I~e~i~K~GL 308 (368)
T 3vjj_A 273 QLATFDNYPFDLLRFQLSSLI------STPALIREKIAKEGL 308 (368)
T ss_dssp HHHHCTTCBHHHHHHHCSSCC------CCCHHHHHHHHHSCS
T ss_pred eeecCCCCCHHHHHHHhhhhc------cChHHHHHHHHhcCc
Confidence 456677899999976655543 444788899999884
Done!