RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy5922
(323 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 86.2 bits (214), Expect = 3e-21
Identities = 33/85 (38%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 18 VGIHLLAGASAGIMEHIIVYPLDTVKTQMQSLT---RKSYKGIIESLQHMMTKEGILRPI 74
LLAG AG + + YPLD VKT++QS + YKGI++ + + +EGI
Sbjct: 5 FLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLY 64
Query: 75 RGLNVVIAGTAPAHALYFSSYEFTK 99
+GL + APA A+YF +YE K
Sbjct: 65 KGLLPNLLRVAPAAAIYFGTYETLK 89
Score = 80.4 bits (199), Expect = 4e-19
Identities = 34/95 (35%), Positives = 50/95 (52%), Gaps = 2/95 (2%)
Query: 230 EYHALTHIVSGGVAGGVAAAVTTPLDVCKTFLNTQPTGQAV--SGLRNAITSVYALGGLA 287
L +++GG+AG +AA VT PLDV KT L + G + G+ + +Y G+
Sbjct: 2 PLSFLASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIR 61
Query: 288 GFFKGTKARVLYTMPSTAICWSTYETFKHFLHEKD 322
G +KG +L P+ AI + TYET K L +K
Sbjct: 62 GLYKGLLPNLLRVAPAAAIYFGTYETLKKLLLKKL 96
Score = 60.3 bits (147), Expect = 8e-12
Identities = 23/74 (31%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
Query: 115 GTAGVIATILHDAIHVPTDVVKQRLQM----YDSPYKSVIDCILRVHAEEGLAAFFRSFT 170
G AG IA + P DVVK RLQ YK ++DC +++ EEG+ ++
Sbjct: 13 GIAGAIAAT---VTY-PLDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLL 68
Query: 171 TQLVMNIPFHTSHF 184
L+ P +F
Sbjct: 69 PNLLRVAPAAAIYF 82
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 86.1 bits (213), Expect = 1e-19
Identities = 79/294 (26%), Positives = 130/294 (44%), Gaps = 75/294 (25%)
Query: 21 HLLAGASAGIMEHIIVYPLDTVKTQMQ-------SLTRKSYKGIIESLQHMMTKEGILRP 73
+L+ GA +G++ ++YP+D++KT +Q S +K Y GI+ +L
Sbjct: 6 NLVTGALSGVIVDAVLYPIDSIKTNIQAKKSFSFSDIKKLYSGILPTL------------ 53
Query: 74 IRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNENIS----YGTAGVIATILHDAIH 129
GT PA A ++ YE +K ++ ENIS Y + IA I +
Sbjct: 54 --------VGTVPASAFFYCFYELSKKLLTEY---RENISKTNLYLISTSIAEITACIVR 102
Query: 130 VPTDVVKQRLQMYDSPYKSVIDCILRVHAEEGLAAFF-RSFTTQLVMNIPFH-TSHFIAV 187
+P ++VKQ +Q+ S SV+ I + EGL +F +S+ +V IPF +F+
Sbjct: 103 LPFEIVKQNMQV--SGNISVLKTIYEITQREGLPSFLGKSYFVMIVREIPFDCIQYFLWE 160
Query: 188 HAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLSNPNREYHALTHIVSGGVAGGVA 247
+E F F+ ++Y ++T + GG+AGG+A
Sbjct: 161 TLKEKAKKDFGKFS---------------------------KKYPSITSAICGGLAGGIA 193
Query: 248 AAVTTPLDVCKTFLNTQPTGQAVSGLRNAITSV--YALGGLAGFFKGTKARVLY 299
+TTP+DV K + Q + G ++ I +V A G F+KG R Y
Sbjct: 194 GFLTTPVDVIK-------SRQIIYG-KSYIETVTEIAEEGYLTFYKGCCFRSSY 239
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 74.0 bits (182), Expect = 4e-15
Identities = 51/167 (30%), Positives = 77/167 (46%), Gaps = 17/167 (10%)
Query: 15 SKQVGIHLLAGASAGIMEHIIVYPLDTVKTQMQSLTRKS----YKGIIESLQHMMTKEGI 70
K G+++L+G AG +IVYPLD +T++ S K + G+ + L + + G
Sbjct: 110 WKFFGVNILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGF 169
Query: 71 LRPIRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNENISYGTAGVIA---TILHDA 127
L +G V + G YF Y+ K + N K N NI Y A +A TIL
Sbjct: 170 LSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDK-NTNILYKWA--VAQTVTILAGL 226
Query: 128 IHVPTDVVKQRLQMY-------DSPYKSVIDCILRVHAEEGLAAFFR 167
I P D V++R+ M + Y +DC ++ EGL FF+
Sbjct: 227 ISYPFDTVRRRMMMMSGRKAKSEIQYTGTLDCWKKILKNEGLGGFFK 273
Score = 46.3 bits (110), Expect = 9e-06
Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 40/231 (17%)
Query: 106 FKVNENISYGTAGVIATILHDAIHVPTDVVKQRLQMYDS-P---------YKSVIDCILR 155
K N + G+ A I A+ P + VK +Q DS P Y +++C R
Sbjct: 3 KKTNFATDFLMGGISAAISKTAV-APIERVKMLIQTQDSIPEIKSGKVPRYSGIVNCFRR 61
Query: 156 VHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHF 215
V E+G+ + +R T ++ P +F +F++ + F F
Sbjct: 62 VSKEQGVLSLWRGNTANVIRYFPTQAFNF-------AFKDYFKNMFPKYNQKTDF--WKF 112
Query: 216 IAYEFAQNLSNPNREYHALTHIVSGGVAGGVAAAVTTPLDVCKTFLNT---QPTGQAVSG 272
F N I+SGG+AG + + PLD +T L + + + +G
Sbjct: 113 ----FGVN-------------ILSGGLAGASSLLIVYPLDFARTRLASDIGKGGDREFTG 155
Query: 273 LRNAITSVYALGGLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLHEKDK 323
L + + + G ++G V + + Y++ K L DK
Sbjct: 156 LFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGNDK 206
Score = 40.1 bits (94), Expect = 8e-04
Identities = 44/193 (22%), Positives = 78/193 (40%), Gaps = 43/193 (22%)
Query: 22 LLAGASAGIMEHIIVYPLDTVKTQMQSLTRKS-----------YKGIIESLQHMMTKEGI 70
L+ G SA I + V P++ VK +Q T+ S Y GI+ + + ++G+
Sbjct: 12 LMGGISAAISK-TAVAPIERVKMLIQ--TQDSIPEIKSGKVPRYSGIVNCFRRVSKEQGV 68
Query: 71 LRPIRG--LNVVIAGTAPAHALYFSSY------------EFTKYFVSNNFKVNENISYGT 116
L RG NV+ A F Y +F K+F N +S G
Sbjct: 69 LSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFWKFFGVNI------LSGGL 122
Query: 117 AGVIATILHDAIHVPTDVVKQRL-----QMYDSPYKSVIDCILRVHAEEGLAAFFRSFTT 171
AG + + I P D + RL + D + + DC++++ + G + ++ F
Sbjct: 123 AGASSLL----IVYPLDFARTRLASDIGKGGDREFTGLFDCLMKISKQTGFLSLYQGFGV 178
Query: 172 QLVMNIPFHTSHF 184
+ I + ++F
Sbjct: 179 SVQGIIVYRGAYF 191
>gnl|CDD|236409 PRK09201, PRK09201, amidase; Provisional.
Length = 465
Score = 31.1 bits (71), Expect = 0.75
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
Query: 217 AYEFAQNLSN--PNREYHALTHIVSGGVAGGVAAAV 250
AY F S+ R H LT I +GG +GG AAAV
Sbjct: 130 AYGFTTENSHYGATRNPHDLTRI-AGGSSGGSAAAV 164
>gnl|CDD|116512 pfam07900, DUF1670, Protein of unknown function (DUF1670). The
hypothetical eukaryotic proteins found in this family
are of unknown function.
Length = 220
Score = 28.6 bits (64), Expect = 3.5
Identities = 12/55 (21%), Positives = 19/55 (34%), Gaps = 8/55 (14%)
Query: 30 IMEHIIV------YPLDTVKTQ--MQSLTRKSYKGIIESLQHMMTKEGILRPIRG 76
+ E IV Y + T + L S I ++ + G + P RG
Sbjct: 87 LREKKIVRIFNEAYEQGALLTHADIAILLGVSTTTISRHVKEYEERTGEVVPTRG 141
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This family
of proteins contains FAD dependent oxidoreductases and
related proteins.
Length = 415
Score = 28.7 bits (65), Expect = 3.9
Identities = 24/105 (22%), Positives = 35/105 (33%), Gaps = 27/105 (25%)
Query: 237 IVSGGVAGGVAAAVTTPLDV-----CKTFLNTQPT----GQAVSGLRNAITSVYA----L 283
+V GG GVAAA+ K L + G A SGL Y +
Sbjct: 3 VVVGGGPAGVAAAIA-----AARLGAKVLL-VERRGWLGGMATSGLVGTDDGNYDRGQVI 56
Query: 284 GGLAG-FFKGTKARVLYTMPSTAICWSTYE------TFKHFLHEK 321
GG+A F + +AR + + ++ L E
Sbjct: 57 GGIAREFLRRLRARG-GPLGNRTSGPWPFDPEVAKLVLDEMLAEA 100
>gnl|CDD|180945 PRK07363, PRK07363, NAD(P)H-quinone oxidoreductase subunit M;
Validated.
Length = 501
Score = 28.1 bits (63), Expect = 7.3
Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 218 YEFAQNLSNPNREYHALTHIVSGGVAGGVAA 248
Y +N P R Y++L +++GG+AG + A
Sbjct: 97 YSIGENTERP-RLYYSLILLINGGIAGALLA 126
>gnl|CDD|233982 TIGR02715, amido_AtzE, amidohydrolase, AtzE family. Members of
this protein family are aminohydrolases related to, but
distinct from, glutamyl-tRNA(Gln) amidotransferase
subunit A. The best characterized member is the biuret
hydrolase of Pseudomonas sp. ADP, which hydrolyzes
ammonia from the three-nitrogen compound biuret to yield
allophanate. Allophanate is also an intermediate in urea
degradation by the urea carboxylase/allophanate
hydrolase pathway, an alternative to urease [Unknown
function, Enzymes of unknown specificity].
Length = 452
Score = 27.8 bits (62), Expect = 8.6
Identities = 17/36 (47%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 217 AYEFAQNLSN--PNREYHALTHIVSGGVAGGVAAAV 250
AY F ++ P R H LT I +GG +GG AAAV
Sbjct: 123 AYGFTTENAHYGPTRNPHDLTRI-AGGSSGGSAAAV 157
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.134 0.394
Gapped
Lambda K H
0.267 0.0701 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,161,824
Number of extensions: 1549126
Number of successful extensions: 1522
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1512
Number of HSP's successfully gapped: 28
Length of query: 323
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 226
Effective length of database: 6,635,264
Effective search space: 1499569664
Effective search space used: 1499569664
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (26.6 bits)