RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5922
(323 letters)
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 142 bits (360), Expect = 2e-40
Identities = 63/325 (19%), Positives = 108/325 (33%), Gaps = 57/325 (17%)
Query: 18 VGIHLLAGASAGIMEHIIVYPLDTVKTQMQ----------SLTRKSYKGIIESLQHMMTK 67
+ + L +A + +I +PLDT K ++Q + Y+G++ ++ M+
Sbjct: 1 MTVKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRT 60
Query: 68 EGILRPIRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNENISYGT---AGVIATIL 124
EG GL + ++ Y+ K F + +E+ G+ AG L
Sbjct: 61 EGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKG---SEHAGIGSRLLAGSTTGAL 117
Query: 125 HDAIHVPTDVVKQRLQMY-----DSPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIPF 179
A+ PTDVVK R Q Y+S ++ + EEG+ ++
Sbjct: 118 AVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWK------------ 165
Query: 180 HTSHFIAVHAEEGL-AAFFRSFTTQLVMNIPFHTSHFIAYEFAQN--LSNPNREYHALTH 236
G R+ + Y+ ++ L H
Sbjct: 166 ------------GTSPNVARNAIVNCAE--------LVTYDLIKDTLLKANLMTDDLPCH 205
Query: 237 IVSGGVAGGVAAAVTTPLDVCKTFLNTQPTGQAVSGLRNAITSVYALGGLAGFFKGTKAR 296
S AG + +P+DV KT GQ + ++ G F+KG
Sbjct: 206 FTSAFGAGFCTTVIASPVDVVKTRYMNSALGQ-YHSAGHCALTMLRKEGPRAFYKGFMPS 264
Query: 297 VLYTMPSTAICWSTYETFKHFLHEK 321
L + + TYE K L
Sbjct: 265 FLRLGSWNVVMFVTYEQLKRALMAA 289
Score = 85.4 bits (212), Expect = 3e-19
Identities = 45/223 (20%), Positives = 72/223 (32%), Gaps = 50/223 (22%)
Query: 115 GTAGVIATILHDAIHVPTDVVKQRLQM-----------YDSPYKSVIDCILRVHAEEGLA 163
GTA IA + P D K RLQ+ + Y+ V+ IL + EG
Sbjct: 9 GTAACIADL---ITF-PLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPR 64
Query: 164 AFFRSFTTQLVMNIPFHTSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQN 223
+ + GL A L + F + Y+ +
Sbjct: 65 SLYN------------------------GLVA-------GLQRQMSFASVRIGLYDSVKQ 93
Query: 224 -LSNPNREYHALTHIVSGGVAGGVAAAVTTPLDVCKTFLNTQ---PTGQAVSGLRNAITS 279
+ + + +++G G +A AV P DV K Q G+ A +
Sbjct: 94 FYTKGSEHAGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKT 153
Query: 280 VYALGGLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLHEKD 322
+ G+ G +KGT V TY+ K L + +
Sbjct: 154 IAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKAN 196
Score = 63.5 bits (155), Expect = 1e-11
Identities = 21/103 (20%), Positives = 37/103 (35%)
Query: 12 TLESKQVGIHLLAGASAGIMEHIIVYPLDTVKTQMQSLTRKSYKGIIESLQHMMTKEGIL 71
L + + H + AG +I P+D VKT+ + Y M+ KEG
Sbjct: 196 NLMTDDLPCHFTSAFGAGFCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPR 255
Query: 72 RPIRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNENISY 114
+G + + F +YE K + ++ E +
Sbjct: 256 AFYKGFMPSFLRLGSWNVVMFVTYEQLKRALMAAYQSREAPFH 298
Score = 62.3 bits (152), Expect = 2e-11
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 9/98 (9%)
Query: 235 THIVSGGVAGGVAAAVTTPLDVCKTFLNTQPTGQAVS---------GLRNAITSVYALGG 285
+ G A +A +T PLD K L Q Q + G+ I ++ G
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEG 62
Query: 286 LAGFFKGTKARVLYTMPSTAICWSTYETFKHFLHEKDK 323
+ G A + M ++ Y++ K F + +
Sbjct: 63 PRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSE 100
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 139 bits (352), Expect = 3e-39
Identities = 62/324 (19%), Positives = 104/324 (32%), Gaps = 62/324 (19%)
Query: 21 HLLAGASAGIMEHIIVYPLDTVKTQMQ-------SLTRKSYKGIIESLQHMMTKEGILRP 73
LAG A + V P++ VK +Q K YKGII+ + + ++G L
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 74 IRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNEN---------ISYGTAGVIATIL 124
RG + P AL F+ + K ++ S G AG +
Sbjct: 70 WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLC- 128
Query: 125 HDAIHVPTDVVKQRLQM------YDSPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIP 178
P D + RL + + +CI ++ +GL ++ F + I
Sbjct: 129 ---FVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIII 185
Query: 179 FHTSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLSNPNREYHALTHIV 238
+ A + F Y+ A+ + + H + +
Sbjct: 186 Y--------------RAAY-----------------FGVYDTAKGMLPDPKNVHIIVSWM 214
Query: 239 SGGVAGGVAAAVTTPLDVCKTFLNTQP----TGQAVSGLRNAITSVYALGGLAGFFKGTK 294
VA V+ P D + + Q +G + + G FFKG
Sbjct: 215 IAQTVTAVAGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAW 274
Query: 295 ARVLYTMPSTAICWSTYETFKHFL 318
+ VL M A Y+ K F+
Sbjct: 275 SNVLRGMGG-AFVLVLYDEIKKFV 297
Score = 107 bits (269), Expect = 3e-27
Identities = 39/166 (23%), Positives = 72/166 (43%), Gaps = 12/166 (7%)
Query: 16 KQVGIHLLAGASAGIMEHIIVYPLDTVKTQMQSLTRKS-----YKGIIESLQHMMTKEGI 70
+ +L +G +AG VYPLD +T++ + K + G+ + + +G+
Sbjct: 110 RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGL 169
Query: 71 LRPIRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNENISYGTAGVIATILHDAIHV 130
+G NV + G A YF Y+ K + + V+ +S+ A + + +
Sbjct: 170 RGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAGLVSY- 228
Query: 131 PTDVVKQRLQM------YDSPYKSVIDCILRVHAEEGLAAFFRSFT 170
P D V++R+ M D Y +DC ++ +EG AFF+
Sbjct: 229 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAW 274
Score = 92.7 bits (231), Expect = 6e-22
Identities = 54/222 (24%), Positives = 83/222 (37%), Gaps = 43/222 (19%)
Query: 115 GTAGVIA-TILHDAIHVPTDVVKQRLQ--------MYDSPYKSVIDCILRVHAEEGLAAF 165
G A I+ T + P + VK LQ + YK +IDC++R+ E+G +F
Sbjct: 15 GVAAAISKTAVA-----PIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 69
Query: 166 FRSFTTQLVMNIPFHTSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLS 225
+R ++ P +F AF + + + H + FA NL
Sbjct: 70 WRGNLANVIRYFPTQALNF----------AFKDKYKQIFLGGVDRHKQFWRY--FAGNL- 116
Query: 226 NPNREYHALTHIVSGGVAGGVAAAVTTPLDVCKTFLNTQPTGQAV----SGLRNAITSVY 281
SGG AG + PLD +T L A +GL N IT ++
Sbjct: 117 ------------ASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIF 164
Query: 282 ALGGLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLHEKDK 323
GL G ++G V + A + Y+T K L +
Sbjct: 165 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKN 206
Score = 66.1 bits (162), Expect = 1e-12
Identities = 19/102 (18%), Positives = 42/102 (41%), Gaps = 6/102 (5%)
Query: 228 NREYHALTHIVSGGVAGGVAAAVTTPLDVCKTFLNTQPTGQAVS------GLRNAITSVY 281
++ L ++GGVA ++ P++ K L Q + +S G+ + + +
Sbjct: 2 DQALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIP 61
Query: 282 ALGGLAGFFKGTKARVLYTMPSTAICWSTYETFKHFLHEKDK 323
G F++G A V+ P+ A+ ++ + +K
Sbjct: 62 KEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVD 103
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.7 bits (118), Expect = 9e-07
Identities = 33/230 (14%), Positives = 61/230 (26%), Gaps = 75/230 (32%)
Query: 112 ISYGTAGVIATILHDAIHVPTDVVKQRLQMYDSPYKSVIDCILRVHAEE------GLAAF 165
+S+G+ L + VPT Q+ + K + + A++ L
Sbjct: 11 LSHGS-------LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAELVGK 63
Query: 166 FRSFTTQLVMNIPFHTSHFIAVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLS 225
F + + LV P F V L F + H A L
Sbjct: 64 FLGYVSSLVE--PSKVGQFDQV-----LNLCLTEFENCYLEGNDIHA-------LAAKLL 109
Query: 226 NPNREYHALTHIVSGGVAGGVAAAVTTPLDVCKTF------LNTQPTGQAVSGLRNAITS 279
N + ++ K + ++ S L A+
Sbjct: 110 QEND------------------TTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGE 151
Query: 280 ----VYAL-GGLAGFFKGTKARVLYTMPSTAICW----STYETFKHFLHE 320
+ A+ GG +G T + Y+T+ + +
Sbjct: 152 GNAQLVAIFGG-----QGN----------TDDYFEELRDLYQTYHVLVGD 186
Score = 41.2 bits (96), Expect = 4e-04
Identities = 28/183 (15%), Positives = 59/183 (32%), Gaps = 51/183 (27%)
Query: 139 LQ-MYDSPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAVHA-------- 189
L+ +Y + Y ++ +++ AE L+ R+ ++ + + +
Sbjct: 173 LRDLYQT-YHVLVGDLIKFSAET-LSELIRT-----TLDAEKVFTQGLNILEWLENPSNT 225
Query: 190 --EEGLAAFFRSFT----TQLVMNIPFHTSHFIAYEFAQNLSNPNREYHALTHIVSGGVA 243
++ L + S QL H++ A+ L E + +G
Sbjct: 226 PDKDYLLSIPISCPLIGVIQLA--------HYVV--TAKLLGFTPGELRSYLKGATGHSQ 275
Query: 244 GGVAAAVTTPLDVCKTFLNTQPTGQAVSGLRNAITSVYALGGLAGFFKGTKARVLYTMPS 303
G V A D ++F + ++ L FF G R P+
Sbjct: 276 GLVTAVAIAETDSWESF------------FVSVRKAITVL-----FFIG--VRCYEAYPN 316
Query: 304 TAI 306
T++
Sbjct: 317 TSL 319
Score = 41.2 bits (96), Expect = 5e-04
Identities = 53/303 (17%), Positives = 93/303 (30%), Gaps = 108/303 (35%)
Query: 69 GILRP-IRGLNV----VIAGTAPAHALYFSS-YEFTKYFVSNNF----KVNENISYGTAG 118
G LR ++G ++ A A + S + + ++ F + E +Y
Sbjct: 261 GELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYE--AYPNTS 318
Query: 119 VIATILHDAIH----VPT------DVVKQRLQ-------------------MYDSPYKSV 149
+ +IL D++ VP+ ++ ++++Q + + V
Sbjct: 319 LPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV 378
Query: 150 I----------DCILR-VHAEEGL-----------AAFFRSFTTQLVMNIPFHTSHFI-A 186
+ + LR A GL F F L + PFH+ + A
Sbjct: 379 VSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF---LPVASPFHSHLLVPA 435
Query: 187 VHA-EEGLAAFFRSFT-TQLVMNIP-FHTSHFIAYEFAQNLSNPNREYHALTHIVSGGVA 243
+ L SF + IP + T +L R SG ++
Sbjct: 436 SDLINKDLVKNNVSFNAKDI--QIPVYDT------FDGSDL----RVL-------SGSIS 476
Query: 244 GGVAAAVTT-PLDVCKTFLNTQPT-----GQ-AVSGLRNAITSVYALGGLAGFFK-GTKA 295
+ + P+ T + T G SG LG L K GT
Sbjct: 477 ERIVDCIIRLPVKWETT-TQFKATHILDFGPGGASG----------LGVLTHRNKDGTGV 525
Query: 296 RVL 298
RV+
Sbjct: 526 RVI 528
Score = 30.4 bits (68), Expect = 1.0
Identities = 21/114 (18%), Positives = 32/114 (28%), Gaps = 61/114 (53%)
Query: 21 HLLAGASAGIME--------------HIIVYPLDTVK-TQMQSLTRKSYKGIIESLQHMM 65
HLL AS I + I VY DT + ++ L+ I E + +
Sbjct: 430 HLLVPASDLINKDLVKNNVSFNAKDIQIPVY--DTFDGSDLRVLS----GSISERIVDCI 483
Query: 66 T-----------------------------------KEGILRPIRGLNVVIAGT 84
K+G G+ V++AGT
Sbjct: 484 IRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDG-----TGVRVIVAGT 532
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 5e-04
Identities = 43/306 (14%), Positives = 85/306 (27%), Gaps = 108/306 (35%)
Query: 30 IMEHIIVYPLDTVKTQMQSLTRKSYKGIIESLQHMMTKEGILRPIRGLNVVIAGTAPAHA 89
+ ++ + V+ ++ + R +YK ++ ++ E +P + I
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIK----TEQR-QPSMMTRMYIEQRDR--- 118
Query: 90 LYFSSYEFTKYFVS------------NNFKVNENIS-YGTAG----VIA----------- 121
LY + F KY VS + +N+ G G +A
Sbjct: 119 LYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQC 178
Query: 122 -------------------------TILH-------------DAIHVPTDVVKQRLQ--M 141
+L+ I + ++ L+ +
Sbjct: 179 KMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLL 238
Query: 142 YDSPYKSVIDC--ILR-VHAEEGLAAF-FRS---FTTQ--LVMNI--PFHTSHFIAVHAE 190
PY+ +C +L V + AF TT+ V + T+H H
Sbjct: 239 KSKPYE---NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 191 EGLA-----AFFRSFTT--------QLVMNIPFHTSHFIAYEFAQNLSNPNR----EYHA 233
L + + +++ P S IA L+ +
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLS-IIAESIRDGLATWDNWKHVNCDK 354
Query: 234 LTHIVS 239
LT I+
Sbjct: 355 LTTIIE 360
Score = 33.3 bits (75), Expect = 0.11
Identities = 23/223 (10%), Positives = 60/223 (26%), Gaps = 40/223 (17%)
Query: 36 VYPLDTVKTQMQSLTRKSYKGIIESLQHMMT------------KEGILRPIRGLNVVIAG 83
V+P L+ + I + ++ KE + I + + +
Sbjct: 380 VFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS-IPSIYLELKV 437
Query: 84 TAPA----HALYFSSYEFTKYFVSNNFKVNENISYGTAGVIATILHDAIHVPTDVVKQRL 139
H Y K F S++ Y + H H+ +R+
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY-----FYS--HIGHHLKNIEHPERM 490
Query: 140 QMYDSPYKSV--IDCILRVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAVHAEEGLAAFF 197
++ + ++ +R + A + + F+ + + +
Sbjct: 491 TLFRMVFLDFRFLEQKIR---HDSTAWNASGSILNTLQQLKFYKPYICDNDPK------Y 541
Query: 198 RSFTTQLVMNIPFHTSHFIAYEFA---Q-NLSNPNREYHALTH 236
++ +P + I ++ + L + H
Sbjct: 542 ERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAH 584
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 29.9 bits (67), Expect = 1.4
Identities = 31/179 (17%), Positives = 66/179 (36%), Gaps = 28/179 (15%)
Query: 19 GIHLLAGASAGIMEHIIVYPLDTVKTQMQSLTRKSYKGIIESLQHMMTKEGILRPIRGLN 78
I L + G + +I L T+ T +++ ++ I ++ + K L+P +
Sbjct: 233 VIDRLIQTTRGDIRQVINL-LSTISTTTKTINHENINEISKAWE----KNIALKPFDIAH 287
Query: 79 VVIAGTAPAHA------------LYFSSYEFTKYFVSNNF----KVNENISYGTAGVIAT 122
++ G + LYF ++FT + N+ +A
Sbjct: 288 KMLDGQIYSDIGSRNFTLNDKIALYFDDFDFTPLMIQENYLSTRPSVLKPGQSHLEAVAE 347
Query: 123 ILHDAIHVPTDVVKQRL----QMYD-SPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMN 176
+ I + D+V++++ Q++ P +V+ + G A +FT L N
Sbjct: 348 AA-NCISL-GDIVEKKIRSSEQLWSLLPLHAVLSSVYPASKVAGHMAGRINFTAWLGQN 404
>1o9p_A Malonamidase E2; malonate; 1.8A {Bradyrhizobium japonicum} SCOP:
c.117.1.1 PDB: 1o9o_A 1obl_A 1och_A 1obk_A 1obi_A
1o9q_A* 1obj_A 1o9n_A 1ock_A 1ocl_A 1ocm_A
Length = 414
Score = 29.0 bits (66), Expect = 2.1
Identities = 11/32 (34%), Positives = 12/32 (37%), Gaps = 1/32 (3%)
Query: 219 EFAQNLSNPNREYHALTHIVSGGVAGGVAAAV 250
FA H H GG + G AAAV
Sbjct: 109 AFASRDPTATLNPHNTGH-SPGGASSGSAAAV 139
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif,
RRM, RNA binding domain, RBD, RNP, structural genomics;
NMR {Mus musculus} SCOP: d.58.7.1
Length = 111
Score = 27.9 bits (62), Expect = 2.2
Identities = 9/34 (26%), Positives = 11/34 (32%), Gaps = 7/34 (20%)
Query: 167 RSFTTQLVMNIPFHTSHFIAVHAEEGLAAFFRSF 200
RS T L N+P T + F F
Sbjct: 8 RSKTVILAKNLPAGTL-------AAEIQETFSRF 34
>3v2u_C Protein GAL3; rossmann fold, GHMP superfamily, transcription
regulation, transcription; HET: GLA ATP; 2.10A
{Saccharomyces cerevisiae} PDB: 3v5r_A 2aj4_A*
Length = 520
Score = 29.0 bits (64), Expect = 2.4
Identities = 11/81 (13%), Positives = 21/81 (25%), Gaps = 2/81 (2%)
Query: 54 YKGIIESLQHMMTKEGILRPIRGLNVVIAGTAPAHALYFSS--YEFTKYFVSNNFKVNEN 111
L+ + + P+ G + P S+ + N N +
Sbjct: 125 LHVAHSYLKKIAPERFNNTPLVGAQIFCQSDIPTGGGLSSAFTCAAALATIRANMGKNFD 184
Query: 112 ISYGTAGVIATILHDAIHVPT 132
IS I + + V
Sbjct: 185 ISKKDLTRITAVAEHYVGVNN 205
>3ejf_A Non-structural protein 3; IBV, coronavirus, X-domain, macro domain,
NSP3, ADRP, hydrolase, ribosomal frameshifting; 1.60A
{Avian infectious bronchitis virus} PDB: 3eke_A* 3ewo_A
3ewp_A*
Length = 176
Score = 27.2 bits (61), Expect = 4.8
Identities = 8/47 (17%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 240 GGVAGGVAAAVTTP--LDVCKTFLNTQPTGQAVSGLRNAITSVYALG 284
GVA +A ++ C+ ++ Q + +T + G
Sbjct: 51 SGVAKAIADF-CGLDFVEYCEDYVKKHGPQQRL------VTPSFVKG 90
>3e9n_A Putative short-chain dehydrogenase/reductase; structural genomics,
unknown function, oxidoreductase, PSI- 2; 2.40A
{Corynebacterium glutamicum}
Length = 245
Score = 27.5 bits (62), Expect = 6.0
Identities = 6/56 (10%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 215 FIAYEFAQNLSNP-NREYHALTHIVSGGVAGGVAAAVTTPLDVCKTFLNTQPTGQA 269
Q L + + +I +A + + T ++ +P +
Sbjct: 178 PTNTPMLQGLMDSQGTNFRPEIYIEPKEIANAIRFVIDAGETTQITNVDVRPRIEL 233
>2pjd_A Ribosomal RNA small subunit methyltransferase C; gene duplication,
RNA modification, SAM binding; 2.10A {Escherichia coli}
Length = 343
Score = 27.3 bits (61), Expect = 7.3
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 6/57 (10%)
Query: 187 VHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLSNPNREYHALTHIVSGGVA 243
V A + F ++ N PFH + + AQ L A+ H+ SGG
Sbjct: 249 VFASNVFSEVKGRFDM-IISNPPFHDGMQTSLDAAQTLIR-----GAVRHLNSGGEL 299
>3nd0_A SLL0855 protein; CLC family CL-/H+ antiporter, CLC_EC1 homolog,
transport protein; 3.20A {Synechocystis} PDB: 3q17_A
Length = 466
Score = 27.4 bits (61), Expect = 8.7
Identities = 8/39 (20%), Positives = 11/39 (28%), Gaps = 3/39 (7%)
Query: 216 IAYEFAQNLSNPNREYHALTHIVSGGVAGGVAAAVTTPL 254
I L ++ G G+A A PL
Sbjct: 154 IGQMTGGWFKATQENQRIL---IAVGAGAGLATAFNAPL 189
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.134 0.394
Gapped
Lambda K H
0.267 0.0603 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,783,521
Number of extensions: 287398
Number of successful extensions: 617
Number of sequences better than 10.0: 1
Number of HSP's gapped: 578
Number of HSP's successfully gapped: 34
Length of query: 323
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 229
Effective length of database: 4,077,219
Effective search space: 933683151
Effective search space used: 933683151
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.0 bits)