RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5922
         (323 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 88.6 bits (218), Expect = 8e-21
 Identities = 55/309 (17%), Positives = 95/309 (30%), Gaps = 42/309 (13%)

Query: 21  HLLAGASAGIMEHIIVYPLDTVKTQMQS-------LTRKSYKGIIESLQHMMTKEGILRP 73
             LAG  A  +    V P++ VK  +Q           K YKGII+ +  +  ++G L  
Sbjct: 9   DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSF 68

Query: 74  IRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNENISYGT-----AGVIATILHDAI 128
            RG    +    P  AL F+  +  K         ++           +G  A       
Sbjct: 69  WRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCF 128

Query: 129 HVPTDVVKQRLQMYDSPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIPFHTSHFIAVH 188
             P D  + RL                                          +    + 
Sbjct: 129 VYPLDFARTRLAAD-------------------------VGKGAAQREFTGLGNCITKIF 163

Query: 189 AEEGLAAFFRSFTTQLVMNIPFHTSHFIAYEFAQNLSNPNREYHALTHIVSGGVAGGVAA 248
             +GL   ++ F   +   I +  ++F  Y+ A+ +    +  H +   +       VA 
Sbjct: 164 KSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAVAG 223

Query: 249 AVTTPLDVCKTFLNTQPTGQAV----SGLRNAITSVYALGGLAGFFKGTKARVLYTMPST 304
            V+ P D  +  +  Q   +      +G  +    +    G   FFKG  + VL  M   
Sbjct: 224 LVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG- 282

Query: 305 AICWSTYET 313
           A     Y+ 
Sbjct: 283 AFVLVLYDE 291



 Score = 64.4 bits (155), Expect = 2e-12
 Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 12/174 (6%)

Query: 16  KQVGIHLLAGASAGIMEHIIVYPLDTVKTQMQSLTRK-----SYKGIIESLQHMMTKEGI 70
           +    +L +G +AG      VYPLD  +T++ +   K      + G+   +  +   +G+
Sbjct: 109 RYFAGNLASGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGL 168

Query: 71  LRPIRGLNVVIAGTAPAHALYFSSYEFTKYFVSNNFKVNENISYGTAGVIATILHDAIHV 130
               +G NV + G     A YF  Y+  K  + +   V+  +S+  A  +  +    +  
Sbjct: 169 RGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDPKNVHIIVSWMIAQTVTAV-AGLVSY 227

Query: 131 PTDVVKQRLQM------YDSPYKSVIDCILRVHAEEGLAAFFRSFTTQLVMNIP 178
           P D V++R+ M       D  Y   +DC  ++  +EG  AFF+   + ++  + 
Sbjct: 228 PFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMG 281



 Score = 45.5 bits (106), Expect = 3e-06
 Identities = 19/92 (20%), Positives = 40/92 (43%), Gaps = 6/92 (6%)

Query: 234 LTHIVSGGVAGGVAAAVTTPLDVCKTFLNTQPTGQAVS------GLRNAITSVYALGGLA 287
           L   ++GGVA  ++     P++  K  L  Q   + +S      G+ + +  +    G  
Sbjct: 7   LKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFL 66

Query: 288 GFFKGTKARVLYTMPSTAICWSTYETFKHFLH 319
            F++G  A V+   P+ A+ ++  + +K    
Sbjct: 67  SFWRGNLANVIRYFPTQALNFAFKDKYKQIFL 98


>d2csga1 b.82.2.12 (A:3-419) Hypothetical protein YbiU {Salmonella
           typhimurium [TaxId: 90371]}
          Length = 417

 Score = 27.2 bits (60), Expect = 2.9
 Identities = 8/67 (11%), Positives = 15/67 (22%), Gaps = 4/67 (5%)

Query: 179 FHTSHFIAVHAEEGLAAFFR----SFTTQLVMNIPFHTSHFIAYEFAQNLSNPNREYHAL 234
           + +   +     E +A         +  +      F+    I Y        P      L
Sbjct: 139 YWSQAQMQARQSEEMALAQSFLNRLWQVEHDGKRWFNPDISIIYPDRIRRRPPGTTSKGL 198

Query: 235 THIVSGG 241
                 G
Sbjct: 199 GAHTDSG 205


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.134    0.394 

Gapped
Lambda     K      H
   0.267   0.0580    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,124,387
Number of extensions: 48919
Number of successful extensions: 118
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 5
Length of query: 323
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 238
Effective length of database: 1,240,546
Effective search space: 295249948
Effective search space used: 295249948
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 53 (24.5 bits)