BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5923
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUJ|A Chain A, X-Ray Crystal Structure Of Ambystoma Tigrinum Cone
Arrestin
Length = 392
Score = 67.4 bits (163), Expect = 2e-12, Method: Composition-based stats.
Identities = 28/67 (41%), Positives = 50/67 (74%), Gaps = 2/67 (2%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTS 73
+DGVV+ + +Y++DRKVF + C+FRYGR++ +++G++F+K+LY + Q+YP K+
Sbjct: 36 VDGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYSLATQVYPPETKE--P 93
Query: 74 LTKMQTQ 80
LT +Q +
Sbjct: 94 LTPLQEK 100
>pdb|1G4M|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4M|B Chain B, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|1G4R|A Chain A, Crystal Structure Of Bovine Beta-Arrestin 1
pdb|3GD1|C Chain C, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
pdb|3GD1|E Chain E, Structure Of An ArrestinCLATHRIN COMPLEX REVEALS A NOVEL
Clathrin Binding Domain That Modulates Receptor
Trafficking
Length = 393
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 51/67 (76%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTS 73
+DGVV+ + +Y+++R+V+ + C+FRYGRE+ ++LGL F+K+L++A+ Q +P + +
Sbjct: 37 VDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKP 96
Query: 74 LTKMQTQ 80
LT++Q +
Sbjct: 97 LTRLQER 103
>pdb|3GC3|A Chain A, Crystal Structure Of Arrestin2s And Clathrin
Length = 385
Score = 66.6 bits (161), Expect = 3e-12, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 51/67 (76%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTS 73
+DGVV+ + +Y+++R+V+ + C+FRYGRE+ ++LGL F+K+L++A+ Q +P + +
Sbjct: 37 VDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKP 96
Query: 74 LTKMQTQ 80
LT++Q +
Sbjct: 97 LTRLQER 103
>pdb|1JSY|A Chain A, Crystal Structure Of Bovine Arrestin-2
pdb|1ZSH|A Chain A, Crystal Structure Of Bovine Arrestin-2 In Complex With
Inositol Hexakisphosphate (Ip6)
pdb|2WTR|A Chain A, Full Length Arrestin2
Length = 418
Score = 66.2 bits (160), Expect = 4e-12, Method: Composition-based stats.
Identities = 26/67 (38%), Positives = 51/67 (76%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTS 73
+DGVV+ + +Y+++R+V+ + C+FRYGRE+ ++LGL F+K+L++A+ Q +P + +
Sbjct: 37 VDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKP 96
Query: 74 LTKMQTQ 80
LT++Q +
Sbjct: 97 LTRLQER 103
>pdb|3P2D|A Chain A, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
pdb|3P2D|B Chain B, Crystal Structure Of Arrestin-3 Reveals The Basis Of The
Difference In Receptor Binding Between Two Non-Visual
Subtypes
Length = 393
Score = 65.1 bits (157), Expect = 9e-12, Method: Composition-based stats.
Identities = 26/51 (50%), Positives = 43/51 (84%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIY 64
+DGVV+ + DY++DRKVF + C+FRYGRE+ ++LGL+F+K+L++A+ Q +
Sbjct: 38 VDGVVLVDPDYLKDRKVFVTLTCAFRYGREDLDVLGLSFRKDLFIANYQAF 88
>pdb|2WTR|B Chain B, Full Length Arrestin2
Length = 418
Score = 65.1 bits (157), Expect = 1e-11, Method: Composition-based stats.
Identities = 25/67 (37%), Positives = 51/67 (76%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTS 73
+DGVV+ + +Y+++R+V+ + C+FRYGRE+ +++GL F+K+L++A+ Q +P + +
Sbjct: 37 VDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVVGLTFRKDLFVANVQSFPPAPEDKKP 96
Query: 74 LTKMQTQ 80
LT++Q +
Sbjct: 97 LTRLQER 103
>pdb|3UGU|A Chain A, Crystal Structure Of P44 (Splice Variant Of Visual
Arrestin)
Length = 380
Score = 55.8 bits (133), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 41/52 (78%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYP 65
+DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++LY + Q++P
Sbjct: 51 VDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFP 102
>pdb|3UGX|A Chain A, Crystal Structure Of Visual Arrestin
pdb|3UGX|B Chain B, Crystal Structure Of Visual Arrestin
pdb|3UGX|C Chain C, Crystal Structure Of Visual Arrestin
pdb|3UGX|D Chain D, Crystal Structure Of Visual Arrestin
Length = 414
Score = 55.5 bits (132), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 41/52 (78%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYP 65
+DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++LY + Q++P
Sbjct: 51 VDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFP 102
>pdb|1CF1|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1CF1|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 404
Score = 55.1 bits (131), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 41/52 (78%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYP 65
+DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++LY + Q++P
Sbjct: 41 VDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFP 92
>pdb|1AYR|A Chain A, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|C Chain C, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|B Chain B, Arrestin From Bovine Rod Outer Segments
pdb|1AYR|D Chain D, Arrestin From Bovine Rod Outer Segments
Length = 368
Score = 54.7 bits (130), Expect = 1e-08, Method: Composition-based stats.
Identities = 18/52 (34%), Positives = 41/52 (78%)
Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYP 65
+DGVV+ + + ++ ++V+ + C+FRYG+E+ +++GL+F+++LY + Q++P
Sbjct: 41 VDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFP 92
>pdb|1UH7|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 4.6
pdb|1UH8|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 8.0
pdb|1UH9|A Chain A, Crystal Structure Of Rhizopuspepsin At Ph 7.0
Length = 325
Score = 25.4 bits (54), Expect = 9.0, Method: Composition-based stats.
Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 8/62 (12%)
Query: 7 GETFPMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPR 66
G +F + D +V FEE GQ + F YG + I+G F K Y+ Q P
Sbjct: 266 GASFQVSPDSLV-FEE-------FQGQCIAGFGYGNWDFAIIGDTFLKNNYVVFNQGVPE 317
Query: 67 SE 68
+
Sbjct: 318 VQ 319
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,623,600
Number of Sequences: 62578
Number of extensions: 91351
Number of successful extensions: 275
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 265
Number of HSP's gapped (non-prelim): 13
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 45 (21.9 bits)