Query psy5923
Match_columns 88
No_of_seqs 103 out of 168
Neff 3.9
Searched_HMMs 29240
Date Fri Aug 16 21:55:54 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5923.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5923hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ugu_A S-arrestin; arrestin fo 100.0 8.1E-41 2.8E-45 267.3 2.8 80 8-88 45-130 (380)
2 1suj_A CONE arrestin; sensory 100.0 5E-35 1.7E-39 233.4 3.6 79 8-88 30-114 (392)
3 1g4m_A Beta-arrestin1; sensory 99.9 1.1E-27 3.8E-32 189.3 2.7 81 8-88 31-117 (393)
4 2pcr_A Inositol-1-monophosphat 48.6 1.8 6.1E-05 31.3 -1.7 45 11-59 85-129 (264)
5 1g0h_A Inositol monophosphatas 47.0 2.6 9E-05 30.2 -1.0 45 11-59 80-124 (252)
6 3lv0_A Extragenic suppressor p 45.0 2.5 8.5E-05 30.8 -1.4 46 11-60 89-134 (267)
7 2fvz_A Inositol monophosphatas 44.5 2.5 8.7E-05 30.4 -1.4 45 11-59 85-129 (273)
8 2bji_A Inositol-1(OR 4)-monoph 43.7 2.4 8.1E-05 30.7 -1.7 45 11-59 89-133 (277)
9 2q74_A Inositol-1-monophosphat 43.5 2.4 8.3E-05 31.3 -1.7 45 11-59 103-147 (299)
10 2p3n_A Inositol-1-monophosphat 43.1 2.7 9.3E-05 30.2 -1.5 45 11-59 78-122 (256)
11 3b8b_A CYSQ, sulfite synthesis 41.3 3.2 0.00011 30.5 -1.3 45 11-59 104-148 (292)
12 2qfl_A Inositol-1-monophosphat 41.2 2.7 9.3E-05 30.1 -1.7 45 11-59 83-127 (267)
13 1vdw_A Hypothetical protein PH 41.1 3.4 0.00012 29.6 -1.2 45 11-59 83-127 (254)
14 1lbv_A Fbpase/impase, fructose 40.9 3 0.0001 29.9 -1.5 45 11-59 81-128 (252)
15 1jp4_A 3'(2'),5'-bisphosphate 36.8 3.1 0.0001 30.4 -2.0 46 10-59 115-171 (308)
16 1xi6_A Extragenic suppressor; 35.1 3.9 0.00013 29.6 -1.7 45 11-59 91-135 (262)
17 3t0j_A Impase II, inositol mon 34.7 3.5 0.00012 30.7 -2.0 45 11-59 90-134 (283)
18 3ryd_A Inositol monophosphatas 34.7 3.4 0.00012 30.6 -2.1 45 11-59 95-139 (273)
19 1ka1_A Halotolerance protein H 32.2 5 0.00017 30.2 -1.5 38 11-53 141-178 (357)
20 1d06_A Nitrogen fixation regul 31.8 6.9 0.00024 22.9 -0.7 37 14-53 26-62 (130)
21 3olo_A Two-component sensor hi 29.9 8.2 0.00028 21.3 -0.6 36 15-53 24-59 (118)
22 2vv6_A FIXL, sensor protein FI 28.6 8.4 0.00029 22.1 -0.7 37 14-53 3-39 (119)
23 2r78_A Sensor protein; sensory 26.7 9.5 0.00032 22.2 -0.7 36 15-53 22-57 (117)
24 3fc7_A HTR-like protein, senso 24.3 11 0.00039 21.0 -0.7 37 15-54 30-66 (125)
25 1n9l_A PHOT-LOV1, putative blu 22.9 13 0.00043 21.5 -0.7 38 15-52 4-41 (109)
26 3a0s_A Sensor protein; PAS-fol 22.2 13 0.00043 19.0 -0.7 36 15-53 3-38 (96)
27 2pr5_A Blue-light photorecepto 21.4 15 0.00051 21.5 -0.6 38 15-52 10-47 (132)
28 3mfx_A Sensory BOX/ggdef famil 20.2 16 0.00056 22.7 -0.6 37 15-54 18-54 (129)
29 3mjq_A Uncharacterized protein 20.1 10 0.00035 21.1 -1.4 37 15-54 10-46 (126)
No 1
>3ugu_A S-arrestin; arrestin fold, signal termination, GPCR, outer segment, SIGN protein; 1.85A {Bos taurus} PDB: 3ugx_A 1cf1_A 1ayr_A
Probab=100.00 E-value=8.1e-41 Score=267.29 Aligned_cols=80 Identities=26% Similarity=0.636 Sum_probs=69.7
Q ss_pred CCCCcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhhhcccccCCCCCCCCCCHHHHhhhc----
Q psy5923 8 ETFPMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQTQNSQ---- 83 (88)
Q Consensus 8 ~~~VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~t~QvyP~~~~~~~~lT~lQe~LlK---- 83 (88)
.++||||||||+|||||++||||||||+|||||||||+|||||+||||||+++.|||||.+ .+++||+|||||+|
T Consensus 45 ~~~vdpvdGvv~vd~~~~~~rkvf~~l~~~fRYGred~dV~Gl~F~kdl~~~~~qvyP~~~-~~~~lT~lQe~L~kKlG~ 123 (380)
T 3ugu_A 45 VERVEPVDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVG-ASGATTRLQESLIKKLGA 123 (380)
T ss_dssp SSCBCCEEEEEEECHHHHTTCEEEEEEEEEEEECC------CCCEEEEEEEEEEEEESCCS-CCCCCCHHHHHHHHHHCT
T ss_pred cCcccccceEEEECHHHhCCCEEEEEEEEEEecCCCccccccchhhhhhhheeEEecCCCC-CCCCCCHHHHHHHHHhCc
Confidence 4789999999999999999999999999999999999999999999999999999999875 56789999999999
Q ss_pred --CCcCC
Q psy5923 84 --HPVWV 88 (88)
Q Consensus 84 --~p~~~ 88 (88)
+||+|
T Consensus 124 nayPF~f 130 (380)
T 3ugu_A 124 NTYPFLL 130 (380)
T ss_dssp TEEEEEE
T ss_pred CceeEEE
Confidence 88875
No 2
>1suj_A CONE arrestin; sensory transduction, signaling protein; 2.38A {Ambystoma tigrinum}
Probab=100.00 E-value=5e-35 Score=233.42 Aligned_cols=79 Identities=35% Similarity=0.751 Sum_probs=74.5
Q ss_pred CCCCcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhhhcccccCCCCCCCCCCHHHHhhhc----
Q psy5923 8 ETFPMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQTQNSQ---- 83 (88)
Q Consensus 8 ~~~VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~t~QvyP~~~~~~~~lT~lQe~LlK---- 83 (88)
.++||||||||+|||+|+|+||||+||+|||||||||+|||||+||||+|+++.|+||+. ..+++|++||||+|
T Consensus 30 ~~~vd~vdGvV~vd~~~lk~rkv~~~l~~~fryGred~~v~Gl~f~kel~~~~~qv~p~~--~~~~~t~lQe~Ll~~~G~ 107 (392)
T 1suj_A 30 VEHVEPVDGVVLIDPEYLKDRKVFVTLTCAFRYGRDDLDLIGMSFRKDLYSLATQVYPPE--TKEPLTPLQEKLMKKLGA 107 (392)
T ss_dssp SSCBCCEEEEEEECTTTSSSCEEEEEEEEEEEEECCSSCCSSCEEEEEEEEEEEEEESCC--SCCCCCHHHHHHHHHHCS
T ss_pred cCccCceeeEEEEcHHHhccceEEEEEEEeeccCCCchhcCcceEEEEEEEEEEEEeCCC--CCccccHHHHHhhhcccC
Confidence 589999999999999999999999999999999999999999999999999999999987 45789999999998
Q ss_pred --CCcCC
Q psy5923 84 --HPVWV 88 (88)
Q Consensus 84 --~p~~~ 88 (88)
+||.|
T Consensus 108 h~fPFsF 114 (392)
T 1suj_A 108 HAYPFCF 114 (392)
T ss_dssp SEEEEEE
T ss_pred eeEeEEe
Confidence 77764
No 3
>1g4m_A Beta-arrestin1; sensory transduction, alternative splicing, signaling protein; 1.90A {Bos taurus} SCOP: b.1.18.11 b.1.18.11 PDB: 1g4r_A 3gd1_C 1jsy_A 1zsh_A* 2wtr_A 2wtr_B 3gc3_A 3p2d_A
Probab=99.93 E-value=1.1e-27 Score=189.27 Aligned_cols=81 Identities=33% Similarity=0.723 Sum_probs=74.8
Q ss_pred CCCCcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhhhcccccCCCCCCCCCCHHHHhhhc----
Q psy5923 8 ETFPMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTSLTKMQTQNSQ---- 83 (88)
Q Consensus 8 ~~~VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~t~QvyP~~~~~~~~lT~lQe~LlK---- 83 (88)
.+++|||+|+|+||++++|+||||++|+|+|||||||+||||++|+|++|+++.|+||+.++++.++|++||+|++
T Consensus 31 ~~~~d~V~GvV~id~~~lk~r~v~v~l~~~frygr~~~~v~g~~f~ke~~~~~~~v~p~~~~~~~~lt~lqe~l~~~~G~ 110 (393)
T 1g4m_A 31 IDLVEPVDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKPLTRLQERLIKKLGE 110 (393)
T ss_dssp SSCBCCEEEEEECCHHHHTTCEEEEEEEEEEEESCTTCCCTTTCEEEEEEEEEEEEESCSTTSCCCCCHHHHHHHHHSCT
T ss_pred cCCCCEEEEEEEEehhHhcccEEEEEEEEEEEecCCcceecccccceeEEEEEEEEeCCCCcccCccchhhhhhhccCCc
Confidence 4689999999999999999999999999999999999999999999999999999999876556789999999997
Q ss_pred --CCcCC
Q psy5923 84 --HPVWV 88 (88)
Q Consensus 84 --~p~~~ 88 (88)
+||.|
T Consensus 111 h~fPF~f 117 (393)
T 1g4m_A 111 HAYPFTF 117 (393)
T ss_dssp TEEEEEE
T ss_pred eEEEEEe
Confidence 57754
No 4
>2pcr_A Inositol-1-monophosphatase; bipolar disorder, struct genomics, NPPSFA, national project on protein structural AN functional analyses; 2.60A {Aquifex aeolicus}
Probab=48.62 E-value=1.8 Score=31.26 Aligned_cols=45 Identities=22% Similarity=0.270 Sum_probs=29.8
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|+..++..+=|+--.=|+-..+..++|.+
T Consensus 85 IDPIDGT----~nF~~g~p~~~vsIal~~~g~pv~GvV~~P~~~e~~~A 129 (264)
T 2pcr_A 85 IDPLDGT----KNYINGFPIFAVSVGLVKGEEPIVGAVYLPYFDKLYWG 129 (264)
T ss_dssp EEEEETH----HHHHHTCSCCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EecccCh----HHHhcCCCCeEEEEEEEECCEEEEEEEecCCCCCEEEE
Confidence 7888882 37788887787777766655544445555666666654
No 5
>1g0h_A Inositol monophosphatase; homodimer, complexed with Ca2+ and I-1-P, hydrolase; HET: IPD; 2.30A {Methanocaldococcus jannaschii} SCOP: e.7.1.1 PDB: 1dk4_A* 1g0i_A*
Probab=46.95 E-value=2.6 Score=30.23 Aligned_cols=45 Identities=18% Similarity=0.172 Sum_probs=31.6
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|+..++...=|+--.=|+...+..++|.+
T Consensus 80 iDPIDGT----~nF~~g~p~~~vsIal~~~g~pv~GvV~~P~~~~~~~a 124 (252)
T 1g0h_A 80 IDPIDGS----FNFINGIPFFAFCFGVFKNNEPYYGLTYEFLTKSFYEA 124 (252)
T ss_dssp EEEEECH----HHHHTTCSCCEEEEEEEESSSEEEEEEEEGGGTEEEEE
T ss_pred EeCCcCh----hHHhcCCCCEEEEEEEEECCEEEEEEEEecCCCCEEEE
Confidence 7888883 47888888888777777666555556666677776654
No 6
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural genomics center for infectious disease, ssgcid, CAT scratch disease; 1.85A {Bartonella henselae} SCOP: e.7.1.0 PDB: 3luz_A
Probab=44.99 E-value=2.5 Score=30.77 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=31.8
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLAS 60 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~t 60 (88)
||||||= ..+++|.-.|+..++..+-|+--.=|+-..+..++|.+.
T Consensus 89 IDPIDGT----~nF~~g~p~f~vsIAl~~~g~pv~GvV~~P~~~e~~~A~ 134 (267)
T 3lv0_A 89 VDPLDGT----TNFLHGIPFFAVSIALESQGKIVAGVIYNPINDELFTAE 134 (267)
T ss_dssp EEEEECH----HHHHTTCSCCEEEEEEEETTEEEEEEEEETTTTEEEEEE
T ss_pred EecCCCh----HHHHhCCCceEEEEEEEECCEEEEEEEecCCCccEEEEE
Confidence 7888883 478888888887777766665555555566667776654
No 7
>2fvz_A Inositol monophosphatase 2; inositol metabolism, structural genomics, structural genomics consortium, SGC, hydrolase; 2.40A {Homo sapiens} PDB: 2czh_A 2czi_A 2czk_A 2ddk_A
Probab=44.47 E-value=2.5 Score=30.45 Aligned_cols=45 Identities=11% Similarity=0.062 Sum_probs=30.6
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|+..++..+-|+--.=|+.-.+..++|.+
T Consensus 85 iDPIDGT----~nF~~g~p~~~vsIal~~~g~pv~GvV~~P~~~~~~~A 129 (273)
T 2fvz_A 85 IDPIDGT----CNFVHRFPTVAVSIGFAVRQELEFGVIYHCTEERLYTG 129 (273)
T ss_dssp EEEEECH----HHHHTTCSCCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EeCccCh----HHHhcCCCCeEEEEEEEECCEEEEEEEEECCCCCEEEE
Confidence 7777772 37888888888777777666555555555666666654
No 8
>2bji_A Inositol-1(OR 4)-monophosphatase; hydrolase, aspartic proteinase mechanism, aspartyl protease, succinimide, zymogen; 1.30A {Bos taurus} PDB: 1imb_A* 1ima_A* 1imc_A 1imd_A 1ime_A 1imf_A 2hhm_A 1awb_A
Probab=43.72 E-value=2.4 Score=30.68 Aligned_cols=45 Identities=11% Similarity=0.150 Sum_probs=31.0
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|+..++..+-|+--.=|+.-.+..++|.+
T Consensus 89 iDPIDGT----~nF~~g~p~~~vsIal~~~g~pv~GvV~~P~~~e~~~A 133 (277)
T 2bji_A 89 IDPIDGT----TNFVHGFPFVAVSIGFVVNKKMEFGIVYSCLEDKMYTG 133 (277)
T ss_dssp EEEEECH----HHHHHTCSCCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EeCCcCH----HHHHcCCCCeEEEEEEEECCEEEEEEEEECCCCCEEEE
Confidence 7888883 47888888888777777666555555556666666654
No 9
>2q74_A Inositol-1-monophosphatase; alpha-beta-alpha-beta-alpha sandwich, hydrolase; 2.60A {Mycobacterium tuberculosis}
Probab=43.48 E-value=2.4 Score=31.32 Aligned_cols=45 Identities=11% Similarity=0.116 Sum_probs=30.4
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= .++++|.-.|+..++..+=|+--.=|+...+..++|.+
T Consensus 103 IDPIDGT----~nFv~g~p~f~vsIal~~~g~pv~GvV~~P~~~e~~~A 147 (299)
T 2q74_A 103 LDPIDGT----VNFVYGIPAYAVSIGAQVGGITVAGAVADVAARTVYSA 147 (299)
T ss_dssp EEEEECH----HHHHHTCSCCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EecccCh----HHHhcCCCCEEEEEEEEECCEEEEEEEEeCCCCCEEEE
Confidence 7888883 47788888888777776655544445555666666654
No 10
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga maritima} PDB: 2p3v_A*
Probab=43.10 E-value=2.7 Score=30.24 Aligned_cols=45 Identities=13% Similarity=0.154 Sum_probs=30.4
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|...++..+=|+--.=|+-..+..++|.+
T Consensus 78 IDPIDGT----~nF~~g~p~~~vsIal~~~g~pv~GvV~~P~~~e~~~A 122 (256)
T 2p3n_A 78 IDPIDGT----INFVHGLPNFSISLAYVENGEVKLGVVHAPALNETLYA 122 (256)
T ss_dssp EEEEETH----HHHHHTCSCCEEEEEEEETTEEEEEEEEEGGGTEEEEE
T ss_pred EeCccCH----HHHHhCCCCeEEEEEEEECCEEEEEEEEecCCCCEEEE
Confidence 7888883 37888888888777777655544445555666776654
No 11
>3b8b_A CYSQ, sulfite synthesis pathway protein; 3'-phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=41.25 E-value=3.2 Score=30.51 Aligned_cols=45 Identities=22% Similarity=0.335 Sum_probs=28.7
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|+..++...=|+--.=|+...+..++|.+
T Consensus 104 IDPIDGT----~nFv~g~p~f~VsIAl~~~g~pv~GvV~~P~~~e~~~A 148 (292)
T 3b8b_A 104 VDPLDGT----KEFIKRNGEFTVNIALVQNAVPVMGVIYVPVKKELYFA 148 (292)
T ss_dssp EEEEECH----HHHHTTCCCCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EecCcCh----hhHhcCCCCEEEEEEEEECCEEEEEEEEecCCCCEEEE
Confidence 7888873 37888877787666666655544445555566666543
No 12
>2qfl_A Inositol-1-monophosphatase; impase extragenic suppressor, dimerization, hydrolase; 1.90A {Escherichia coli}
Probab=41.20 E-value=2.7 Score=30.12 Aligned_cols=45 Identities=24% Similarity=0.315 Sum_probs=27.4
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|+..++..+-|+--.=|+--.+..++|.+
T Consensus 83 iDPIDGT----~nf~~g~p~f~vsIal~~~g~~v~Gvv~~P~~~~~~~a 127 (267)
T 2qfl_A 83 IDPLDGT----TNFIKRLPHFAVSIAVRIKGRTEVAVVYDPMRNELFTA 127 (267)
T ss_dssp EEEEECH----HHHHHTCSCCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EECccCH----HHHhcCCCceEEEEEEEECCEEEEEEEEeCCCCCEEEE
Confidence 7788873 36777777777666666655544444444555555543
No 13
>1vdw_A Hypothetical protein PH1897; homodimer, riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; 1.30A {Pyrococcus horikoshii} SCOP: e.7.1.1
Probab=41.15 E-value=3.4 Score=29.62 Aligned_cols=45 Identities=20% Similarity=0.200 Sum_probs=29.0
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|...++..+=|+--.=|+-..+..++|.+
T Consensus 83 iDPIDGT----~nF~~g~p~f~vsial~~~g~pv~GvV~~P~~~~~~~a 127 (254)
T 1vdw_A 83 VDPLDGS----YNFINGIPFFAVSVAIFHEKDPIYAFIYEPIVERLYEG 127 (254)
T ss_dssp EEEEECH----HHHHTTCSCCEEEEEEEETTEEEEEEEEEGGGTEEEEE
T ss_pred EeCCcCh----HHHhcCCCcEEEEEEEEECCEEEEEEEEecCCCCEEEE
Confidence 7888883 37778877787777666655444445555566666644
No 14
>1lbv_A Fbpase/impase, fructose 1,6-bisphosphatase/inositol monophosphatase; dual activity, archaeal phosphatase, APO- form, hydrolase; 1.80A {Archaeoglobus fulgidus} SCOP: e.7.1.1 PDB: 1lbw_A 1lbx_A* 1lby_A* 1lbz_A*
Probab=40.94 E-value=3 Score=29.89 Aligned_cols=45 Identities=16% Similarity=0.042 Sum_probs=29.1
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeecc---ccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGR---EEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGR---ED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|+..++...=|+ --.=|+.-.+..++|.+
T Consensus 81 IDPIDGT----~nF~~g~p~~~vsIal~~~g~~~~~v~GvV~~P~~~~~~~A 128 (252)
T 1lbv_A 81 LDPLDGT----FNATRGIPVYSVSLCFSYSDKLKDAFFGYVYNLATGDEYYA 128 (252)
T ss_dssp EEEEECH----HHHHTTCSCCEEEEEEESSSBGGGEEEEEEEETTTCCEEEE
T ss_pred EECCCCh----HHHHcCCCceEEEEEEEECCeeCCeEEEEEEEcCCCCEEEE
Confidence 7888883 478888888887777776555 23334445556666544
No 15
>1jp4_A 3'(2'),5'-bisphosphate nucleotidase; protein-product complex, sugar nucleotidase fold, hydrolase; HET: AMP; 1.69A {Rattus norvegicus} SCOP: e.7.1.1 PDB: 2wef_A*
Probab=36.80 E-value=3.1 Score=30.40 Aligned_cols=46 Identities=11% Similarity=0.168 Sum_probs=32.3
Q ss_pred CCcccccEEEeccccccce-eEEEEEeeeeeeccccccccccch----------hhHhhhh
Q psy5923 10 FPMELDGVVVFEEDYIQDR-KVFGQVVCSFRYGREEDEILGLNF----------QKELYLA 59 (88)
Q Consensus 10 ~VdpVDGVVlvDpeylk~r-KVfvql~caFRYGRED~dVmGL~F----------rKdl~l~ 59 (88)
.|||||| -.++++|. -.|...++..+=|+--.=|+...| +.++|.+
T Consensus 115 wIDPIDG----T~nFv~g~~p~~~vsIal~~~g~pv~GvV~~P~~~~~~~~~~~~~~~~~A 171 (308)
T 1jp4_A 115 WVDPVDG----TKEYTEGLLDNVTVLIGIAYEGKAIAGIINQPYYNYQAGPDAVLGRTIWG 171 (308)
T ss_dssp EEEEEEC----HHHHHTTCGGGCEEEEEEEETTEEEEEEEEETTTTTTSCTTSCCCEEEEE
T ss_pred EEcCCcc----hhHHhcCCCCceEEEEEEEECCEEEEEEEECCCCCCccCccCCCCeEEEE
Confidence 3788888 34888998 788877777766665555666677 6666654
No 16
>1xi6_A Extragenic suppressor; structural genomics, southeast collaboratory for structural genomics hyperthermophIle, PSI; 2.80A {Pyrococcus furiosus} SCOP: e.7.1.1
Probab=35.13 E-value=3.9 Score=29.57 Aligned_cols=45 Identities=16% Similarity=0.241 Sum_probs=27.1
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= ..+++|.-.|+..++..+=|+--.=|+-..+..++|.+
T Consensus 91 iDPIDGT----~nF~~g~p~~~vsIal~~~g~~v~GvV~~P~~~~~~~a 135 (262)
T 1xi6_A 91 VDPLDGS----YNFIAGIPFFALSLAVFKKDKPIYAIIYEPMTERFFEG 135 (262)
T ss_dssp EEEEESH----HHHHHTCSCCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EECCcCh----HHHHcCCCcEEEEEEEEECCEEEEEEEEecCCCCEEEE
Confidence 7888883 36778877787666655544333334444555665543
No 17
>3t0j_A Impase II, inositol monophosphatase family protein; FIG superfamily, hydrolase; HET: PG4; 2.59A {Staphylococcus aureus}
Probab=34.72 E-value=3.5 Score=30.69 Aligned_cols=45 Identities=16% Similarity=0.244 Sum_probs=30.5
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
||||||= .++++|.-.|+..++..+=|+--.=|+-..++.++|.+
T Consensus 90 IDPIDGT----~nFi~g~p~f~VsIAL~~~g~pv~GvV~~P~~~e~~~A 134 (283)
T 3t0j_A 90 VDPIDGT----LNFVHQQENFAISIGIYIDGKPYAGFVYDVMADVLYHA 134 (283)
T ss_dssp EEEEECH----HHHHHHSCSCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EeccCCh----HHHHcCCCceEEEEEEEECCEEEEEEEeecCCCeEEEE
Confidence 7888883 37788888887777666655555555555667777665
No 18
>3ryd_A Inositol monophosphatase family protein; impase fold, FIG superfamily protein, hydrolase; HET: SRT; 2.37A {Staphylococcus aureus} PDB: 3qmf_A
Probab=34.66 E-value=3.4 Score=30.56 Aligned_cols=45 Identities=18% Similarity=0.234 Sum_probs=28.2
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchhhHhhhh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLA 59 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrKdl~l~ 59 (88)
|||||| -.++++|.-.|+..++..+=|+--.=|+-..++.++|.+
T Consensus 95 IDPIDG----T~nFv~g~p~f~vsIAl~~~g~pv~GvV~~P~~~e~~~A 139 (273)
T 3ryd_A 95 MDPIDG----TANLVKQQEDYCIILAYFYEGKPMLSYVYDYPHKKLYKA 139 (273)
T ss_dssp EEEEEC----HHHHHHHSCSCEEEEEEEETTEEEEEEEEETTTTEEEEE
T ss_pred EecccC----HHHHHhCCCCeEEEEEEEECCEEEEEEEEECCCCcEEEE
Confidence 788877 236777777777666666555544445555566666654
No 19
>1ka1_A Halotolerance protein HAL2; nucleotidase, salt tolerance, inositol, hydrolase; HET: A3P; 1.30A {Saccharomyces cerevisiae} SCOP: e.7.1.1 PDB: 1k9y_A 1ka0_A* 1k9z_A* 1qgx_A*
Probab=32.24 E-value=5 Score=30.18 Aligned_cols=38 Identities=13% Similarity=0.187 Sum_probs=26.8
Q ss_pred CcccccEEEeccccccceeEEEEEeeeeeeccccccccccchh
Q psy5923 11 PMELDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQ 53 (88)
Q Consensus 11 VdpVDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~Fr 53 (88)
|||||| -.+|++|. -|+..++...=|+--.=|+.-.|.
T Consensus 141 IDPIDG----T~nFv~g~-~~~VsIal~~~g~pv~GVV~~P~~ 178 (357)
T 1ka1_A 141 LDPIDG----TKGFLRGE-QFAVCLALIVDGVVQLGCIGCPNL 178 (357)
T ss_dssp EEEEET----HHHHHTTS-CCEEEEEEEETTEEEEEEEEETTC
T ss_pred EccccC----hHHHhcCC-ccEEEEEEEECCEEEEEEEECCCc
Confidence 899999 44788887 687777777656555556666665
No 20
>1d06_A Nitrogen fixation regulatory protein FIXL; oxygen sensor, histidine kinase, PAS, high-resolution, two-C system, signaling protein; HET: HEM; 1.40A {Sinorhizobium meliloti} SCOP: d.110.3.2 PDB: 1ew0_A*
Probab=31.76 E-value=6.9 Score=22.94 Aligned_cols=37 Identities=27% Similarity=0.374 Sum_probs=24.7
Q ss_pred cccEEEeccccccceeEEEEEeeeeeeccccccccccchh
Q psy5923 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQ 53 (88)
Q Consensus 14 VDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~Fr 53 (88)
-|||+++|++ |+=+|+--.+.=-+|-...|++|.++.
T Consensus 26 ~d~i~~~d~~---g~i~~~N~a~~~l~Gy~~~eliG~~~~ 62 (130)
T 1d06_A 26 PDATVVSATD---GTIVSFNAAAVRQFGYAEEEVIGQNLR 62 (130)
T ss_dssp SSEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred cCeEEEECCC---CeEEEEcHHHHHHHCCCHHHHcCCcHH
Confidence 3689999975 555555444444457777788998764
No 21
>3olo_A Two-component sensor histidine kinase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, TRA; 2.09A {Nostoc SP}
Probab=29.94 E-value=8.2 Score=21.31 Aligned_cols=36 Identities=8% Similarity=0.156 Sum_probs=23.4
Q ss_pred ccEEEeccccccceeEEEEEeeeeeeccccccccccchh
Q psy5923 15 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQ 53 (88)
Q Consensus 15 DGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~Fr 53 (88)
|||+++|++ |+=+|+--.++=-+|....|++|.++.
T Consensus 24 ~~i~~~d~~---g~i~~~N~~~~~l~G~~~~el~g~~~~ 59 (118)
T 3olo_A 24 EASFCLGDN---WQFLYVNDATCRMTEYSREQLLSMNLQ 59 (118)
T ss_dssp SEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBGG
T ss_pred ceEEEECCC---CcEEEEHHHHHHHHCCCHHHHhCCChh
Confidence 688999964 565555433333356666778888765
No 22
>2vv6_A FIXL, sensor protein FIXL; signaling protein, transferase, phosphoprotein, nitrogen FIX PER-ARNT-SIM, metal-binding, PAS, iron, heme; HET: HEM; 1.5A {Bradyrhizobium japonicum} PDB: 1xj6_A* 1xj4_A* 2vv7_A* 2vv8_A* 1lsw_A* 1dp8_A* 1dp9_A* 1drm_A* 1lsv_A* 1dp6_A* 1lsx_A* 1lt0_A* 1y28_A* 2cmn_A* 1xj3_A* 1xj2_A* 2owh_A* 2owj_A*
Probab=28.64 E-value=8.4 Score=22.11 Aligned_cols=37 Identities=19% Similarity=0.235 Sum_probs=24.2
Q ss_pred cccEEEeccccccceeEEEEEeeeeeeccccccccccchh
Q psy5923 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQ 53 (88)
Q Consensus 14 VDGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~Fr 53 (88)
-|||+++|++ |+=+|+--.+.=-+|-...|++|-++.
T Consensus 3 ~d~i~~~d~~---g~i~~~N~a~~~l~G~~~~el~G~~~~ 39 (119)
T 2vv6_A 3 PDAMIVIDGH---GIIQLFSTAAERLFGWSELEAIGQNVN 39 (119)
T ss_dssp CCEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred cceEEEECCC---CeEEEEhHHHHHHhCCCHHHHcCCCHH
Confidence 3789999965 555555444443456666788888764
No 23
>2r78_A Sensor protein; sensory box sensor histidine kinase/response regulator, structural genomics, PSI, MCSG; 1.60A {Geobacter sulfurreducens pca}
Probab=26.71 E-value=9.5 Score=22.22 Aligned_cols=36 Identities=19% Similarity=0.361 Sum_probs=22.8
Q ss_pred ccEEEeccccccceeEEEEEeeeeeeccccccccccchh
Q psy5923 15 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQ 53 (88)
Q Consensus 15 DGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~Fr 53 (88)
|||+++|++ |+=+|+--.+.=-+|-...|++|.++.
T Consensus 22 d~i~~~d~~---g~i~~vN~a~~~l~Gy~~~el~g~~~~ 57 (117)
T 2r78_A 22 DGIFIMDAE---GHYLDVNPAICSAIGYTRDEFLALDWG 57 (117)
T ss_dssp SEEEEECTT---SBEEEECHHHHHHHCCCHHHHTTCBTT
T ss_pred ceEEEECCC---CCEEEecHHHHHHHCcCHHHHcCCCHH
Confidence 689999975 565555333332346566688888753
No 24
>3fc7_A HTR-like protein, sensor protein; APC87712.1, HTR-like protein,haloarcula marismortui ATCC 430 structural genomics, PSI-2; 2.65A {Haloarcula marismortui}
Probab=24.28 E-value=11 Score=21.04 Aligned_cols=37 Identities=19% Similarity=0.324 Sum_probs=23.8
Q ss_pred ccEEEeccccccceeEEEEEeeeeeeccccccccccchhh
Q psy5923 15 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQK 54 (88)
Q Consensus 15 DGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrK 54 (88)
+||+++|++ |+=+++--.+.=-+|....+++|-++..
T Consensus 30 ~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~ 66 (125)
T 3fc7_A 30 DGIVHLTTN---GTILSVNPSMAGRLGADPDTLVGQQLSA 66 (125)
T ss_dssp CEEEEEETT---SBEEEECHHHHHHHTSCHHHHTTSBGGG
T ss_pred CeEEEEcCC---CeEEEECHHHHHHhCCCHHHHcCccHHH
Confidence 689999965 4555553333334566677788877653
No 25
>1n9l_A PHOT-LOV1, putative blue light receptor; phototropin, flavin, electron transport; HET: FMN; 1.90A {Chlamydomonas reinhardtii} SCOP: d.110.3.6 PDB: 1n9n_A* 1n9o_A*
Probab=22.89 E-value=13 Score=21.46 Aligned_cols=38 Identities=24% Similarity=0.183 Sum_probs=25.0
Q ss_pred ccEEEeccccccceeEEEEEeeeeeeccccccccccch
Q psy5923 15 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNF 52 (88)
Q Consensus 15 DGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~F 52 (88)
+||++.|++-..|+=+|+--.+.==.|-...|++|-+.
T Consensus 4 ~~i~i~d~~~~~g~i~~~N~a~~~l~Gy~~~e~~G~~~ 41 (109)
T 1n9l_A 4 HTFVVADATLPDCPLVYASEGFYAMTGYGPDEVLGHNC 41 (109)
T ss_dssp CEEEEEETTSTTCCEEEECHHHHHHHCCCHHHHTTSCG
T ss_pred cEEEEEcCCCCCCeEEEEchHHHHHHCcCHHHHcCCCc
Confidence 68899997765677777643332234666678888764
No 26
>3a0s_A Sensor protein; PAS-fold, kinase, phosphoprotein, transferase, two-component regulatory system; HET: PG4 PGE; 1.47A {Thermotoga maritima} PDB: 3a0v_A*
Probab=22.20 E-value=13 Score=19.03 Aligned_cols=36 Identities=14% Similarity=0.313 Sum_probs=19.9
Q ss_pred ccEEEeccccccceeEEEEEeeeeeeccccccccccchh
Q psy5923 15 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQ 53 (88)
Q Consensus 15 DGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~Fr 53 (88)
+||+++|++ |+=+|+--.+.=-+|....+++|-++.
T Consensus 3 ~~i~~~d~~---g~i~~~N~~~~~l~g~~~~~~~g~~~~ 38 (96)
T 3a0s_A 3 TAIITLSKD---GRITEWNKKAEQLFGLKKENVLGRRLK 38 (96)
T ss_dssp CEEEEEETT---SBEEEECHHHHHHHCCCHHHHTTSBGG
T ss_pred ceEEEEcCC---CCEeehhHHHHHHhCCCHHHhcCCCHH
Confidence 588889864 444444322222235555567776654
No 27
>2pr5_A Blue-light photoreceptor; light-oxygen-voltage, LOV, PER-ARNT-SIM, PAS, flavoprotein, protein; HET: FMN; 1.45A {Bacillus subtilis} PDB: 2pr6_A*
Probab=21.38 E-value=15 Score=21.47 Aligned_cols=38 Identities=29% Similarity=0.299 Sum_probs=24.7
Q ss_pred ccEEEeccccccceeEEEEEeeeeeeccccccccccch
Q psy5923 15 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNF 52 (88)
Q Consensus 15 DGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~F 52 (88)
|||+++|++--.|+=+|+--.+.=-+|....|++|-++
T Consensus 10 ~~i~~~d~~g~~~~i~~~N~a~~~~~G~~~~el~g~~~ 47 (132)
T 2pr5_A 10 VGVVITDPALEDNPIVYVNQGFVQMTGYETEEILGKNC 47 (132)
T ss_dssp CEEEEECTTSTTCCEEEECHHHHHHHSCCHHHHTTSCG
T ss_pred CcEEEEeCCCCCCcEEEECHHHHHHhCcCHHHHcCCCh
Confidence 68899997643346566544333345777778888765
No 28
>3mfx_A Sensory BOX/ggdef family protein; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Shewanella oneidensis}
Probab=20.18 E-value=16 Score=22.74 Aligned_cols=37 Identities=3% Similarity=0.033 Sum_probs=25.0
Q ss_pred ccEEEeccccccceeEEEEEeeeeeeccccccccccchhh
Q psy5923 15 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQK 54 (88)
Q Consensus 15 DGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrK 54 (88)
|||+++|.+ |+=+++--.+.==.|....|++|.++..
T Consensus 18 d~i~~~D~~---g~I~~~N~aa~~l~G~~~~el~G~~~~~ 54 (129)
T 3mfx_A 18 EAMILVNAN---GFIRSCNQRSAELLDCPQVSLKGQDWRN 54 (129)
T ss_dssp SEEEEEETT---SBEEEECHHHHHHTTSCHHHHTTSBGGG
T ss_pred ceEEEECCC---CEEEeEhHHHHHHHCcCHHHHcCCcHHH
Confidence 799999964 6666664444333566667788988753
No 29
>3mjq_A Uncharacterized protein; NESG, structural genomics, PSI-2, protein structure initiati northeast structural genomics consortium; 2.60A {Desulfitobacterium hafniense}
Probab=20.12 E-value=10 Score=21.06 Aligned_cols=37 Identities=11% Similarity=0.414 Sum_probs=22.3
Q ss_pred ccEEEeccccccceeEEEEEeeeeeeccccccccccchhh
Q psy5923 15 DGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQK 54 (88)
Q Consensus 15 DGVVlvDpeylk~rKVfvql~caFRYGRED~dVmGL~FrK 54 (88)
+||+++|++ |+=+++--.+.=-+|....+++|.++..
T Consensus 10 ~~i~~~d~~---g~i~~~N~~~~~~~g~~~~~~~g~~~~~ 46 (126)
T 3mjq_A 10 DMILIINRE---GRLLYANTAVPKKLGYTHEELMSMHILT 46 (126)
T ss_dssp SEEEEEETT---SBEEEECTHHHHHHSCCHHHHHHSBHHH
T ss_pred ceEEEEeCC---CcEEEEcHHHHHHHCCCHHHHcCCCHHH
Confidence 688889875 5555543222223466667777877653
Done!