RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy5923
         (88 letters)



>gnl|CDD|215866 pfam00339, Arrestin_N, Arrestin (or S-antigen), N-terminal
          domain.  Ig-like beta-sandwich fold. Scop reports
          duplication with C-terminal domain.
          Length = 148

 Score = 42.3 bits (100), Expect = 2e-06
 Identities = 17/68 (25%), Positives = 29/68 (42%), Gaps = 8/68 (11%)

Query: 14 LDGVVVFEED-YIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHT 72
          + G V+      I+ R V   +    R G EE E++GL F+K++Y           K+  
Sbjct: 18 VSGKVLLTTKKPIKARAVKITLKGRARTGWEESEVMGLTFRKQIY-----PTVNYSKE-- 70

Query: 73 SLTKMQTQ 80
          +    Q +
Sbjct: 71 TYLDTQER 78


>gnl|CDD|235601 PRK05773, PRK05773, 3,4-dihydroxy-2-butanone 4-phosphate
          synthase; Validated.
          Length = 219

 Score = 30.8 bits (70), Expect = 0.044
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)

Query: 28 RKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEK 69
          RK  G ++C +     E + LGLNF  E  L   ++Y +  K
Sbjct: 46 RKNAGGLIC-YATSNSEGKTLGLNFLAE-ILKRHELYRKLVK 85


>gnl|CDD|192604 pfam10495, PACT_coil_coil, Pericentrin-AKAP-450 domain of
          centrosomal targeting protein.  This domain is a
          coiled-coil region close to the C-terminus of
          centrosomal proteins that is directly responsible for
          recruiting AKAP-450 and pericentrin to the centrosome.
          Hence the suggested name for this region is a PACT
          domain (pericentrin-AKAP-450 centrosomal targeting).
          This domain is also present at the C-terminus of
          coiled-coil proteins from Drosophila and S. pombe, and
          that from the Drosophila protein is sufficient for
          targeting to the centrosome in mammalian cells. The
          function of these proteins is unknown but they seem
          good candidates for having a centrosomal or spindle
          pole body location. The final 22 residues of this
          domain in AKAP-450 appear specifically to be a
          calmodulin-binding domain indicating that this member
          at least is likely to contribute to centrosome
          assembly.
          Length = 77

 Score = 26.1 bits (58), Expect = 1.4
 Identities = 10/32 (31%), Positives = 12/32 (37%)

Query: 39 RYGREEDEILGLNFQKELYLASEQIYPRSEKQ 70
          RY REE     L +QK   L     Y    + 
Sbjct: 1  RYLREESFRKDLVYQKRYLLLLLGGYQECNQA 32


>gnl|CDD|180866 PRK07179, PRK07179, hypothetical protein; Provisional.
          Length = 407

 Score = 25.4 bits (56), Expect = 4.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 23  DYIQDRKVFGQVVCS 37
           D +++R VFG V C+
Sbjct: 348 DALEERNVFGAVFCA 362


>gnl|CDD|173847 cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and
           eukaryotic short/branched chain acyl-CoA dehydrogenases.
            Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a
           mitochondrial beta-oxidation enzyme. It catalyzes the
           alpha,beta dehydrogenation of the corresponding
           trans-enoyl-CoA by FAD, which becomes reduced. The
           reduced form of SCAD is reoxidized in the oxidative
           half-reaction by electron-transferring flavoprotein
           (ETF), from which the electrons are transferred to the
           mitochondrial respiratory chain coupled with ATP
           synthesis.  This subgroup also contains the eukaryotic
           short/branched chain acyl-CoA dehydrogenase(SBCAD), the
           bacterial butyryl-CoA dehydorgenase(BCAD) and
           2-methylbutyryl-CoA dehydrogenase, which is involved in
           isoleucine catabolism.  These enzymes are homotetramers.
          Length = 373

 Score = 24.9 bits (55), Expect = 6.1
 Identities = 7/16 (43%), Positives = 11/16 (68%)

Query: 23  DYIQDRKVFGQVVCSF 38
           DY ++RK FG+ +  F
Sbjct: 257 DYAKERKQFGKPIADF 272


>gnl|CDD|236425 PRK09240, thiH, thiamine biosynthesis protein ThiH; Reviewed.
          Length = 371

 Score = 24.4 bits (54), Expect = 8.8
 Identities = 9/32 (28%), Positives = 12/32 (37%), Gaps = 11/32 (34%)

Query: 8   ETFPME-----------LDGVVVFEEDYIQDR 28
           E  P+            LDGV V++E Y    
Sbjct: 157 EVQPLSEEEYAELVELGLDGVTVYQETYNPAT 188


>gnl|CDD|223934 COG1002, COG1002, Type II restriction enzyme, methylase subunits
           [Defense mechanisms].
          Length = 786

 Score = 24.5 bits (53), Expect = 9.9
 Identities = 5/33 (15%), Positives = 9/33 (27%)

Query: 22  EDYIQDRKVFGQVVCSFRYGREEDEILGLNFQK 54
              I +    G          +ED  L    ++
Sbjct: 335 LKDILNNAKLGNDDGLPPLIWQEDLKLIKPPKE 367


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0766    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 4,424,792
Number of extensions: 359297
Number of successful extensions: 283
Number of sequences better than 10.0: 1
Number of HSP's gapped: 283
Number of HSP's successfully gapped: 11
Length of query: 88
Length of database: 10,937,602
Length adjustment: 56
Effective length of query: 32
Effective length of database: 8,453,778
Effective search space: 270520896
Effective search space used: 270520896
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)