RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5923
         (88 letters)



>d1g4ma1 b.1.18.11 (A:5-175) Arrestin {Cow (Bos taurus),
          beta-arrestin 1 [TaxId: 9913]}
          Length = 171

 Score =  101 bits (253), Expect = 1e-29
 Identities = 26/66 (39%), Positives = 50/66 (75%)

Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTS 73
          +DGVV+ + +Y+++R+V+  + C+FRYGRE+ ++LGL F+K+L++A+ Q +P + +    
Sbjct: 33 VDGVVLVDPEYLKERRVYVTLTCAFRYGREDLDVLGLTFRKDLFVANVQSFPPAPEDKKP 92

Query: 74 LTKMQT 79
          LT++Q 
Sbjct: 93 LTRLQE 98


>d1cf1a1 b.1.18.11 (A:10-182) Arrestin {Cow (Bos taurus), visual
          arrestin [TaxId: 9913]}
          Length = 173

 Score = 97.1 bits (242), Expect = 6e-28
 Identities = 20/65 (30%), Positives = 46/65 (70%), Gaps = 1/65 (1%)

Query: 14 LDGVVVFEEDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELYLASEQIYPRSEKQHTS 73
          +DGVV+ + + ++ ++V+  + C+FRYG+E+ +++GL+F+++LY +  Q++P       +
Sbjct: 32 VDGVVLVDPELVKGKRVYVSLTCAFRYGQEDIDVMGLSFRRDLYFSQVQVFPPVGAS-GA 90

Query: 74 LTKMQ 78
           T++Q
Sbjct: 91 TTRLQ 95


>d1j71a_ b.50.1.2 (A:) Acid protease {Yeast (Candida tropicalis)
           [TaxId: 5482]}
          Length = 334

 Score = 23.7 bits (50), Expect = 3.9
 Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 2/36 (5%)

Query: 22  EDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELY 57
            + I   K     +C F   R +  ILG NF +  Y
Sbjct: 275 SELI--LKDSDSSICYFGISRNDANILGDNFLRRAY 308


>d1acca_ f.11.1.1 (A:) Anthrax protective antigen {Anthrax bacillus
           (Bacillus anthracis) [TaxId: 1392]}
          Length = 722

 Score = 23.3 bits (50), Expect = 5.0
 Identities = 7/31 (22%), Positives = 9/31 (29%)

Query: 53  QKELYLASEQIYPRSEKQHTSLTKMQTQNSQ 83
           Q    LA    YP       +L      +S 
Sbjct: 387 QLSQILAPNNYYPSKNLAPIALNAQDDFSST 417


>d2apra_ b.50.1.2 (A:) Acid protease {Bread mold (Rhizopus
           chinensis) [TaxId: 4843]}
          Length = 325

 Score = 23.3 bits (49), Expect = 5.3
 Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 1/36 (2%)

Query: 22  EDYIQDRKVFGQVVCSFRYGREEDEILGLNFQKELY 57
           +  + + +  GQ +  F YG     I+G  F K  Y
Sbjct: 274 DSLVFE-EFQGQCIAGFGYGNWGFAIIGDTFLKNNY 308


>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease,
          N-terminal domain {Archaeon Methanococcus jannaschii
          [TaxId: 2190]}
          Length = 74

 Score = 22.0 bits (47), Expect = 7.8
 Identities = 8/24 (33%), Positives = 11/24 (45%)

Query: 39 RYGREEDEILGLNFQKELYLASEQ 62
           YG  E   L L+  + LYL +  
Sbjct: 26 HYGNVEGNFLSLSLVEALYLINLG 49


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.401 

Gapped
Lambda     K      H
   0.267   0.0576    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 324,108
Number of extensions: 12998
Number of successful extensions: 25
Number of sequences better than 10.0: 1
Number of HSP's gapped: 25
Number of HSP's successfully gapped: 8
Length of query: 88
Length of database: 2,407,596
Length adjustment: 53
Effective length of query: 35
Effective length of database: 1,679,906
Effective search space: 58796710
Effective search space used: 58796710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.2 bits)