BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy5925
(696 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q61493|DPOLZ_MOUSE DNA polymerase zeta catalytic subunit OS=Mus musculus GN=Rev3l PE=1
SV=3
Length = 3122
Score = 429 bits (1103), Expect = e-119, Method: Compositional matrix adjust.
Identities = 221/500 (44%), Positives = 335/500 (67%), Gaps = 44/500 (8%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2249 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2305
Query: 262 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKEL 317
PDP +D + A+FY + + P E+ G+I+I ++ +
Sbjct: 2306 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTH----------------- 2348
Query: 318 FSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGY 377
+++R P +LI I LE + ++EK LF ++++DPDIL+GY
Sbjct: 2349 -----QDIRSQTP-LLIRSGITG------LEVTYAADEKALFQEITNIIKRYDPDILLGY 2396
Query: 378 EIETLSWGYLLERGYVLGLNLNQELSRITE--VEKR-NSSRDEVKN---TQLQMPGRIVI 431
EI+ SWGYLL+R L ++L Q +SR+ + +E R + RD+ + +++ + GRI +
Sbjct: 2397 EIQMHSWGYLLQRAAALSVDLCQMISRVPDDKIENRFAAERDDYGSDTMSEINIVGRITL 2456
Query: 432 NLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRV 491
NLWR++R+EV L +YTFEN+ +HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV
Sbjct: 2457 NLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRV 2516
Query: 492 TGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIK 551
G ++++EQLD IG+TSEMARLFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PSI+
Sbjct: 2517 RGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSIQ 2576
Query: 552 QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSD 611
QR+ MRAP+ +PLI+EPESR Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D
Sbjct: 2577 QRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYD 2636
Query: 612 SFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM 671
F FGC L V L +++ ++T+SP+GVAFV S+R G+LP+ML+EIL TRLMVKQSM
Sbjct: 2637 EFKFGCTSLRVPPDLLYQIRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSM 2696
Query: 672 KEYKFSESLRNLTMLNSMLL 691
K YK +L MLN+ L
Sbjct: 2697 KSYKQDRALSR--MLNARQL 2714
Score = 83.2 bits (204), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 109 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASR 159
R Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC + R
Sbjct: 2596 RFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLR 2646
>sp|O60673|DPOLZ_HUMAN DNA polymerase zeta catalytic subunit OS=Homo sapiens GN=REV3L PE=1
SV=2
Length = 3130
Score = 426 bits (1095), Expect = e-118, Method: Compositional matrix adjust.
Identities = 215/492 (43%), Positives = 331/492 (67%), Gaps = 42/492 (8%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
+ TP++ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2257 VNTPQK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLE 2313
Query: 262 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKEL 317
PDP +D + A+FY + + P E+ G+I+I ++
Sbjct: 2314 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDK--------------------- 2352
Query: 318 FSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGY 377
+ F +++R P +LI I LE + ++EK LF ++++DPDIL+GY
Sbjct: 2353 -TVFSQDIRYQTP-LLIRSGITG------LEVTYAADEKALFHEIANIIKRYDPDILLGY 2404
Query: 378 EIETLSWGYLLERGYVLGLNLNQELSRITE--VEKR-NSSRDEVKN---TQLQMPGRIVI 431
EI+ SWGYLL+R L ++L + +SR+ + +E R + RDE + +++ + GRI +
Sbjct: 2405 EIQMHSWGYLLQRAAALSIDLCRMISRVPDDKIENRFAAERDEYGSYTMSEINIVGRITL 2464
Query: 432 NLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRV 491
NLWR++R+EV L +YTFEN+ +HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV
Sbjct: 2465 NLWRIMRNEVALTNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRV 2524
Query: 492 TGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIK 551
G ++++EQLD IG+TSEMARLFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PS++
Sbjct: 2525 RGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQ 2584
Query: 552 QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSD 611
QR+ MRAP+ +PLI+EPESR Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D
Sbjct: 2585 QRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYD 2644
Query: 612 SFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM 671
F FGC L V L +++ ++T+SP+GVAFV S+R G+LP+ML+EIL TR MVKQSM
Sbjct: 2645 EFKFGCTSLRVPPDLLYQVRHDITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSM 2704
Query: 672 KEYKFSESLRNL 683
K YK +L +
Sbjct: 2705 KAYKQDRALSRM 2716
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 34/51 (66%), Positives = 42/51 (82%)
Query: 109 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASR 159
R Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC + R
Sbjct: 2604 RFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLR 2654
>sp|P14284|DPOZ_YEAST DNA polymerase zeta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=REV3 PE=1 SV=1
Length = 1504
Score = 256 bits (654), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 157/436 (36%), Positives = 245/436 (56%), Gaps = 43/436 (9%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLY--TCPPEEDRKV-GIILIGQESELPEV 301
LT L +EIHA +R+ PDPA DEV I + L T P + D GI+++ + SE
Sbjct: 667 LTHLTLEIHANTRSDKIPDPAIDEVSMIIWCLEEETFPLDLDIAYEGIMIVHKASE---D 723
Query: 302 RTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSI 361
T P ++ NE + F +E E+F
Sbjct: 724 STFPTKIQHCINEIPVM--------------------------------FYESEFEMFEA 751
Query: 362 FIENVRQWDPDILIGYEIETLSWGYLLER-GYVLGLNLNQELSRIT-EVE-KRNSSRDEV 418
+ V DPDIL G+EI SWGY++ER + ++ +EL+R+ +++ K + +
Sbjct: 752 LTDLVLLLDPDILSGFEIHNFSWGYIIERCQKIHQFDIVRELARVKCQIKTKLSDTWGYA 811
Query: 419 KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHL 478
++ + + GR +IN+WR LR +VNL YT E+ +++LH+R+P S++ LT W +
Sbjct: 812 HSSGIMITGRHMINIWRALRSDVNLTQYTIESAAFNILHKRLPHFSFESLTNMWNAKKST 871
Query: 479 YKWMTVEHY-LIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRL 537
+ TV +Y L R I+L+ + D+I R E ARL GI F+ V RGSQF+VES ++R+
Sbjct: 872 TELKTVLNYWLSRAQINIQLLRKQDYIARNIEQARLIGIDFHSVYYRGSQFKVESFLIRI 931
Query: 538 SRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCF 597
+ +F+ +SP K +A E +PL++EPES Y P+IVLDFQSLYPS++I YNYC+
Sbjct: 932 CKSESFILLSPGKKDVRKQKALECVPLVMEPESAFYKSPLIVLDFQSLYPSIMIGYNYCY 991
Query: 598 STCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKML 657
ST +GRV + ++++ G ++ L L+ ++TI+P+GV + S+R L KML
Sbjct: 992 STMIGRVREINLTEN-NLGVSKFSLPRNILALLKNDVTIAPNGVVYAKTSVRKSTLSKML 1050
Query: 658 QEILDTRLMVKQSMKE 673
+ILD R+M+K++M E
Sbjct: 1051 TDILDVRVMIKKTMNE 1066
Score = 60.1 bits (144), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 33/41 (80%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDS 150
Y P+IVLDFQSLYPS++I YNYC+ST +GRV + ++++
Sbjct: 966 FYKSPLIVLDFQSLYPSIMIGYNYCYSTMIGRVREINLTEN 1006
>sp|Q9P6L6|DPOZ_SCHPO DNA polymerase zeta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=rev3 PE=3 SV=1
Length = 1480
Score = 246 bits (627), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 130/328 (39%), Positives = 204/328 (62%), Gaps = 8/328 (2%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQELSRITEVEK 410
V++E EL + I RQ DP I+ GYE+ SWGYL+ER Y +L ++LSR+ K
Sbjct: 720 VNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASYRFNYDLPEQLSRLKCTSK 779
Query: 411 RNSSRDE-----VKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
N ++ E + + + GR V+N+WR+LR EVNL +Y+ EN++ ++ ++ P ++
Sbjct: 780 ANFAKKENAWKYTTTSSINIVGRHVLNIWRILRGEVNLLNYSLENVVLNIFKKQTPYYNQ 839
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRG 525
W+ K + + + L R + ++ + + E AR+ GI F V+SRG
Sbjct: 840 ADKVHLWQSSRFHEKQILLNYMLNRTRYCLEILSACAIVTKIREQARIIGIDFMSVISRG 899
Query: 526 SQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSL 585
SQF+VESIM R+++ N++ SPS KQ A A E+LPL++EP+S LY +P++VLDFQSL
Sbjct: 900 SQFKVESIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNNPVVVLDFQSL 959
Query: 586 YPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVD 645
YPS+IIAYN C+STCLG V+ + F N +I +L ++ ++ ISP+G A+V
Sbjct: 960 YPSIIIAYNLCYSTCLGPVKIVNGKVKLGFMFHSSNPNIVNL--IKNDVYISPNGYAYVK 1017
Query: 646 KSIRCGILPKMLQEILDTRLMVKQSMKE 673
+++R +L KML+E+++TR MVK+ MK+
Sbjct: 1018 ENVRKSLLAKMLEELIETRNMVKRGMKD 1045
Score = 66.2 bits (160), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 35/76 (46%), Positives = 51/76 (67%), Gaps = 3/76 (3%)
Query: 70 ESSLERSMKPDDR--PSPTRKNKSTRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSV 127
ES + R KP++ PSP+ K + +++ ++ D LY +P++VLDFQSLYPS+
Sbjct: 905 ESIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSD-LYNNPVVVLDFQSLYPSI 963
Query: 128 IIAYNYCFSTCLGRVE 143
IIAYN C+STCLG V+
Sbjct: 964 IIAYNLCYSTCLGPVK 979
>sp|Q9LVN7|DPOD1_ARATH DNA polymerase delta catalytic subunit OS=Arabidopsis thaliana
GN=POLD1 PE=2 SV=2
Length = 1095
Score = 135 bits (339), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 115/400 (28%), Positives = 188/400 (47%), Gaps = 57/400 (14%)
Query: 293 GQESELPEVRTKP-IQM-NFVS--NEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLE 348
G++ PE + P IQ+ N V+ E F + ++ P ++G ++ +F
Sbjct: 317 GRKGHFPEAKHDPVIQIANLVTLQGEDHPFVRNVMTLKSCAP--IVGVDVMSFE------ 368
Query: 349 RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI--T 406
E+E+ + + +R DPDI+IGY I YL+ER LG+ L R+ +
Sbjct: 369 -----TEREVLLAWRDLIRDVDPDIIIGYNICKFDLPYLIERAATLGIEEFPLLGRVKNS 423
Query: 407 EVEKRNS---SRD----EVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 459
V R+S SR E K T ++ GR +L + + + L SY+ ++ H L E+
Sbjct: 424 RVRVRDSTFSSRQQGIRESKETTIE--GRFQFDLIQAIHRDHKLSSYSLNSVSAHFLSEQ 481
Query: 460 IPLHSWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 515
++T E R L + + YL + RL+++L FI EMAR+ G
Sbjct: 482 KEDVHHSIITDLQNGNAETRRRLAVYCLKDAYLPQ-----RLLDKLMFIYNYVEMARVTG 536
Query: 516 IQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTD 575
+ +L+RG +V S +LR + N V P+ KQ + +LE + Y
Sbjct: 537 VPISFLLARGQSIKVLSQLLRKGKQKNLVL--PNAKQSGSEQGTYEGATVLEARTGFYEK 594
Query: 576 PIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLT 635
PI LDF SLYPS+++AYN C+ T + + +R L +++T
Sbjct: 595 PIATLDFASLYPSIMMAYNLCYCTLVTPED------------------VRKLNLPPEHVT 636
Query: 636 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+PSG FV ++++ GILP++L+E+L R K +KE K
Sbjct: 637 KTPSGETFVKQTLQKGILPEILEELLTARKRAKADLKEAK 676
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 106 SRDRLYTDPIIVLDFQSLYPSVIIAYNYCFST 137
+R Y PI LDF SLYPS+++AYN C+ T
Sbjct: 587 ARTGFYEKPIATLDFASLYPSIMMAYNLCYCT 618
>sp|P90829|DPOD1_CAEEL DNA polymerase delta catalytic subunit OS=Caenorhabditis elegans
GN=F10C2.4 PE=3 SV=1
Length = 1081
Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 103/339 (30%), Positives = 161/339 (47%), Gaps = 52/339 (15%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 413
NEK L + E VR+ DPDI+ GY I Y+L+R VL L L R + EK +
Sbjct: 343 NEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR--QKEKGSV 400
Query: 414 SRDEV---------KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER----- 459
RD N + + GRI+ ++ +++ + L+SYT ++ Y L E+
Sbjct: 401 VRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVE 460
Query: 460 ---IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGI 516
IP L + R L ++ + YL +RL+++L I EMAR+ G+
Sbjct: 461 HNIIP----DLQRGDEQTRRRLAQYCLKDAYLP-----LRLLDKLMSIINYIEMARVTGV 511
Query: 517 QFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDP 576
+L++G Q ++ S+MLR + NNF P I+ + +++P Y +P
Sbjct: 512 PMNFLLTKGQQIKILSMMLRRCKQNNFFL--PVIEANSGDGEGYEGATVIDPIRGFYNEP 569
Query: 577 IIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTI 636
I LDF SLYPS++IA+N C++T L + GV + ++
Sbjct: 570 IATLDFASLYPSIMIAHNLCYTTLLKSPQ--GVEN--------------------EDYIR 607
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+PSG F KS R G+LP++L++IL R K MK K
Sbjct: 608 TPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEK 646
Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 32/49 (65%), Gaps = 3/49 (6%)
Query: 94 SSFDSDMFPSSSSRDRL---YTDPIIVLDFQSLYPSVIIAYNYCFSTCL 139
+S D + + ++ D + Y +PI LDF SLYPS++IA+N C++T L
Sbjct: 546 NSGDGEGYEGATVIDPIRGFYNEPIATLDFASLYPSIMIAHNLCYTTLL 594
>sp|Q9LRE6|DPOD1_ORYSJ DNA polymerase delta catalytic subunit OS=Oryza sativa subsp.
japonica GN=POLD1 PE=2 SV=1
Length = 1105
Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 116/400 (29%), Positives = 186/400 (46%), Gaps = 57/400 (14%)
Query: 293 GQESELPEVRTKP-IQM-NFVS--NEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLE 348
G++ PE P IQ+ N V+ E + F + ++ P ++G ++ +F
Sbjct: 325 GRKGHFPEPTHDPVIQIANLVTLQGEGQPFVRNVMTLKSCSP--IVGVDVMSFD------ 376
Query: 349 RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI--- 405
E+++ + + +R+ DPDI+IGY I YL+ER VL + L RI
Sbjct: 377 -----TERDVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEVLKIVEFPILGRIRNS 431
Query: 406 ------TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 459
T R E K+ ++ GR+ +L + ++ + L SY+ ++ H L E+
Sbjct: 432 RVRVRDTTFSSRQYGMRESKDVAVE--GRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQ 489
Query: 460 IP--LHSW--KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 515
HS L E R L + + YL + RL+++L +I EMAR+ G
Sbjct: 490 KEDVHHSIISDLQNGNSETRRRLAVYCLKDAYLPQ-----RLLDKLMYIYNYVEMARVTG 544
Query: 516 IQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTD 575
+ +LSRG +V S +LR ++ N V P+IK +A + +LE + Y
Sbjct: 545 VPISFLLSRGQSIKVLSQLLRKAKQKNLVI--PNIKGQASGQDTFEGATVLEARAGFYEK 602
Query: 576 PIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLT 635
PI LDF SLYPS+++AYN C+ T + P LN+ S+ K
Sbjct: 603 PIATLDFASLYPSIMMAYNLCYCTLVP-----------PEDARKLNLPPESVNK------ 645
Query: 636 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+PSG FV ++ GILP++L+E+L R K +KE K
Sbjct: 646 -TPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAK 684
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 71 SSLERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSS---SRDRLYTDPIIVLDFQSLYPSV 127
S L R K + P K +++ D F ++ +R Y PI LDF SLYPS+
Sbjct: 561 SQLLRKAKQKNLVIPNIKGQAS----GQDTFEGATVLEARAGFYEKPIATLDFASLYPSI 616
Query: 128 IIAYNYCFST 137
++AYN C+ T
Sbjct: 617 MMAYNLCYCT 626
>sp|P46588|DPOD_CANAX DNA polymerase delta catalytic subunit OS=Candida albicans GN=POL3
PE=3 SV=2
Length = 1038
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 93/329 (28%), Positives = 159/329 (48%), Gaps = 35/329 (10%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSS 414
E+++ + E + + DPD++IGY Y+L R LGLN R+ V +
Sbjct: 308 EEDMLMHWKEFITKVDPDVIIGYNTANFDIPYVLNRAKALGLNDFPFFGRLKRV--KQEI 365
Query: 415 RDEV---------KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
+D V +N + + GR+ ++L + ++ E L+SYT ++ H L E+
Sbjct: 366 KDAVFSSRAYGTRENKVVNIDGRMQLDLLQFIQREYKLRSYTLNSVSAHFLGEQKEDVQH 425
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
++T + + V Y ++ + +RL+++L + +EMAR+ G+ F +LSR
Sbjct: 426 SIITDLQNGTKETRRRLAV--YCLKDAFLPLRLLDKLMCLVNYTEMARVTGVPFSYLLSR 483
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 584
G Q +V S + R + V P++K E +I EPE Y PI LDF S
Sbjct: 484 GQQIKVISQLFRKCLQEDIVI--PNLKSEGSNEEYEGATVI-EPERGYYDVPIATLDFSS 540
Query: 585 LYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFV 644
LYPS+++A+N C++T L + SI++ + + T +P+G FV
Sbjct: 541 LYPSIMMAHNLCYTTLLNK------------------NSIKAFGLTEDDYTKTPNGDYFV 582
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKE 673
++R GILP +L E+L R K +K+
Sbjct: 583 HSNLRKGILPTILDELLTARKKAKADLKK 611
Score = 41.6 bits (96), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 32/45 (71%), Gaps = 3/45 (6%)
Query: 108 DRLYTD-PIIVLDFQSLYPSVIIAYNYCFSTCLGR--VEHLGVSD 149
+R Y D PI LDF SLYPS+++A+N C++T L + ++ G+++
Sbjct: 525 ERGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLNKNSIKAFGLTE 569
>sp|O48901|DPOD1_SOYBN DNA polymerase delta catalytic subunit OS=Glycine max GN=POLD1 PE=2
SV=1
Length = 1088
Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 118/405 (29%), Positives = 190/405 (46%), Gaps = 67/405 (16%)
Query: 293 GQESELPEVRTKP-IQM-NFVSNEKELFSTFIENV---RQWDPDILIGYEIETFSWGYLL 347
G++ PE P IQ+ N V+ + E FI NV + P ++G ++ F
Sbjct: 282 GRKGHFPEPTHDPVIQIANLVTLQGE-DQPFIRNVMTLKSCSP--IVGVDVMPFE----- 333
Query: 348 ERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITE 407
E+E+ + + +R+ DPDI+IGY I YL+ER LN +++
Sbjct: 334 ------TEREVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERA------LNLKIAEFPI 381
Query: 408 VEKRNSSRDEVKNT-------------QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYH 454
+ + +SR VK+T ++ + GR+ +L ++++ + L SY+ ++ H
Sbjct: 382 LGRIRNSRVRVKDTTFSSRQYGTRESKEVAVEGRVTFDLLQVMQRDYKLSSYSLNSVSSH 441
Query: 455 VLHERIP--LHSW--KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEM 510
L E+ HS L E R L + + YL + RL+++L FI EM
Sbjct: 442 FLSEQKEDVHHSIISDLQNGNAETRRRLAVYCLKDAYLPQ-----RLLDKLMFIYNYVEM 496
Query: 511 ARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPES 570
AR+ G+ +LSRG +V S +LR +R N V P+ KQ + +LE +
Sbjct: 497 ARVTGVPISFLLSRGQSIKVLSQLLRRARQKNLVI--PNAKQAGSEQGTFEGATVLEARA 554
Query: 571 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKL 630
Y PI LDF SLYPS+++AYN C+ T + P LN+ S+ +
Sbjct: 555 GFYEKPIATLDFASLYPSIMMAYNLCYCTLV-----------IPEDARKLNIPPESVNR- 602
Query: 631 QQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+PSG FV +++ GILP++L+E+L R K +KE K
Sbjct: 603 ------TPSGETFVKSNLQKGILPEILEELLTARKRAKADLKEAK 641
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 106 SRDRLYTDPIIVLDFQSLYPSVIIAYNYCFST 137
+R Y PI LDF SLYPS+++AYN C+ T
Sbjct: 552 ARAGFYEKPIATLDFASLYPSIMMAYNLCYCT 583
>sp|P54358|DPOD1_DROME DNA polymerase delta catalytic subunit OS=Drosophila melanogaster
GN=DNApol-delta PE=2 SV=2
Length = 1092
Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 108/398 (27%), Positives = 178/398 (44%), Gaps = 56/398 (14%)
Query: 293 GQESELPEVRTKPI----QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLE 348
G++ PE + P+ M E+E F + + + P +IG ++
Sbjct: 305 GRKGIFPEAKIDPVIQIANMVIRQGEREPFIRNVFTLNECAP--IIGSQVLCHD------ 356
Query: 349 RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEV 408
E ++ + VR+ DPDIL GY I + YLL R L + + L RI +
Sbjct: 357 -----KETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRNFEYLGRIKNI 411
Query: 409 ---------EKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 459
+ + R E N + GR+ +L +L + L+SYT + YH L E+
Sbjct: 412 RSVIKEQMLQSKQMGRRE--NQYVNFEGRVPFDLLFVLLRDYKLRSYTLNAVSYHFLQEQ 469
Query: 460 IPLHSWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 515
++T + R L + + YL +RL+E+L I EMAR+ G
Sbjct: 470 KEDVHHSIITDLQNGDEQTRRRLAMYCLKDAYLP-----LRLLEKLMAIVNYMEMARVTG 524
Query: 516 IQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTD 575
+ +L+RG Q +V S +LR ++ F+ PS + E +I EP+ Y D
Sbjct: 525 VPLESLLTRGQQIKVLSQLLRKAKTKGFIM--PSYTSQGSDEQYEGATVI-EPKRGYYAD 581
Query: 576 PIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQN-L 634
PI LDF SLYPS+++A+N C++T + LG + +R + LQ + +
Sbjct: 582 PISTLDFASLYPSIMMAHNLCYTTLV-----LGGTRE----------KLRQQENLQDDQV 626
Query: 635 TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMK 672
+P+ FV +R G+LP++L+ +L R K +K
Sbjct: 627 ERTPANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK 664
Score = 43.5 bits (101), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFST 137
Y DPI LDF SLYPS+++A+N C++T
Sbjct: 579 YADPISTLDFASLYPSIMMAHNLCYTT 605
>sp|P30315|DPOD1_PLAFK DNA polymerase delta catalytic subunit OS=Plasmodium falciparum
(isolate K1 / Thailand) GN=POLD1 PE=3 SV=1
Length = 1094
Score = 122 bits (306), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 96/332 (28%), Positives = 157/332 (47%), Gaps = 31/332 (9%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-- 410
++EK L + E + + DPD L GY I Y+L RG L L + L RI V
Sbjct: 366 NDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKFLGRIKNVASTV 425
Query: 411 RNSSRDEVK-----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
++SS + ++ + GRI +++ L++ + L+SYT + + L E+ +
Sbjct: 426 KDSSFSSKQFGTHETKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHY 485
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGII--RLIEQLDFIGRTSEMARLFGIQFYEVLS 523
++ K + Y I+ G++ RLI++L FI EMAR+ G F +L+
Sbjct: 486 SIMNDLQNESPESRKRIAT--YCIK-DGVLPLRLIDKLLFIYNYVEMARVTGTPFVYLLT 542
Query: 524 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQ 583
RG Q +V S + R + N+V PS + + +LEP Y +PI LDF
Sbjct: 543 RGQQIKVTSQLYRKCKELNYVI--PSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLDFA 600
Query: 584 SLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAF 643
SLYPS++IA+N C+ST I N + L+ + + F
Sbjct: 601 SLYPSIMIAHNLCYST-----------------LIKSNHEVSDLQNDDITTIQGKNNLKF 643
Query: 644 VDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
V K+++ GILP +++E+++ R VK +K K
Sbjct: 644 VKKNVKKGILPLIVEELIEARKKVKLLIKNEK 675
Score = 42.7 bits (99), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL 139
Y +PI LDF SLYPS++IA+N C+ST +
Sbjct: 590 YIEPISTLDFASLYPSIMIAHNLCYSTLI 618
>sp|P28339|DPOD1_BOVIN DNA polymerase delta catalytic subunit OS=Bos taurus GN=POLD1 PE=1
SV=1
Length = 1106
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 63/400 (15%)
Query: 293 GQESELPEVRTKPI----QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLE 348
G++ PE P+ + E E F +R P ++G +++++
Sbjct: 320 GRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAP--ILGAKVQSYE------ 371
Query: 349 RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER------------GYVLGL 396
E++L + +R DPD++ GY I+ YL+ R G V+GL
Sbjct: 372 -----REEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGRVIGL 426
Query: 397 NLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL 456
N R + + R + R + K + M GR+ +++ ++L E L+SYT + +H L
Sbjct: 427 RSN---IRESSFQSRQTGRRDSKV--VSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFL 481
Query: 457 HERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFG 515
E+ ++T + + V Y ++ + +RL+E+L + EMAR+ G
Sbjct: 482 GEQKEDVQHSIITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTG 539
Query: 516 IQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTD 575
+ +LSRG Q +V S +LR + + P +K + ++EP Y
Sbjct: 540 VPLGYLLSRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDV 595
Query: 576 PIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQN 633
PI LDF SLYPS+++A+N C++T L G + LG+++
Sbjct: 596 PIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTED--------------------Q 635
Query: 634 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+P+G FV S+R G+LP++L+ +L R K + +
Sbjct: 636 FIKTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAK 675
Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSD 149
Y PI LDF SLYPS+++A+N C++T L G + LG+++
Sbjct: 593 YDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTE 633
>sp|P15436|DPOD_YEAST DNA polymerase delta catalytic subunit OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=POL3 PE=1 SV=4
Length = 1097
Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 96/339 (28%), Positives = 161/339 (47%), Gaps = 46/339 (13%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN----------LNQEL 402
+ E+E+ S + + + DPD++IGY YLL R L +N + QE+
Sbjct: 377 ATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEI 436
Query: 403 SRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPL 462
K +R E KN + GR+ ++L + ++ E L+SYT + H L E+
Sbjct: 437 KESVFSSKAYGTR-ETKNVNID--GRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKED 493
Query: 463 HSWKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 518
+ +++ E R L + + YL +RL+E+L + +EMAR+ G+ F
Sbjct: 494 VHYSIISDLQNGDSETRRRLAVYCLKDAYLP-----LRLMEKLMALVNYTEMARVTGVPF 548
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
+L+RG Q +V S + R + V P+++ +A E +I EP Y PI
Sbjct: 549 SYLLARGQQIKVVSQLFR--KCLEIDTVIPNMQSQASDDQYEGATVI-EPIRGYYDVPIA 605
Query: 579 VLDFQSLYPSVIIAYNYCFSTCLGR--VEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTI 636
LDF SLYPS+++A+N C++T + VE L + K+ ++ I
Sbjct: 606 TLDFNSLYPSIMMAHNLCYTTLCNKATVERLNL-------------------KIDEDYVI 646
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+P+G FV R GILP +L E++ R K+ +++ K
Sbjct: 647 TPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEK 685
Score = 39.7 bits (91), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 26/39 (66%), Gaps = 2/39 (5%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR--VEHLGV 147
Y PI LDF SLYPS+++A+N C++T + VE L +
Sbjct: 600 YDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNL 638
>sp|P30316|DPOD_SCHPO DNA polymerase delta catalytic subunit OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=pol3 PE=1 SV=2
Length = 1086
Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 107/398 (26%), Positives = 186/398 (46%), Gaps = 57/398 (14%)
Query: 293 GQESELPEVRTKP-IQMNFVSNEKELFSTFIENVRQWDP-DILIGYEIETFSWGYLLERH 350
G++ P+ P IQ+ + + + F+ NV D ++G ++ F
Sbjct: 305 GRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRNVFCVDTCSQIVGTQVYEFQ-------- 356
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI----- 405
N+ E+ S + + VR DPD+LIGY I YLL+R L ++ L RI
Sbjct: 357 ---NQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGRIHNFFS 413
Query: 406 ----TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP 461
T + E K T + PGR+ +++ ++++ + L+SY+ + L E+
Sbjct: 414 VAKETTFSSKAYGTRESKTTSI--PGRLQLDMLQVMQRDFKLRSYSLNAVCSQFLGEQKE 471
Query: 462 LHSWKLLT----CWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQ 517
+ ++T + R L + + YL + RL+++L +EMAR+ G+
Sbjct: 472 DVHYSIITDLQNGTADSRRRLAIYCLKDAYLPQ-----RLMDKLMCFVNYTEMARVTGVP 526
Query: 518 FYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPI 577
F +L+RG Q +V S + R + ++ V P+I+ E +I EP Y PI
Sbjct: 527 FNFLLARGQQIKVISQLFRKALQHDLVV--PNIRVNGTDEQYEGATVI-EPIKGYYDTPI 583
Query: 578 IVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNL--T 635
LDF SLYPS++ A+N C++T L D N + L KL+Q++ +
Sbjct: 584 ATLDFSSLYPSIMQAHNLCYTTLL-----------------DSNTA--ELLKLKQDVDYS 624
Query: 636 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
++P+G FV +R G+LP +L ++L+ R K +K+
Sbjct: 625 VTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKK 662
Score = 39.7 bits (91), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL 139
Y PI LDF SLYPS++ A+N C++T L
Sbjct: 579 YDTPIATLDFSSLYPSIMQAHNLCYTTLL 607
>sp|P28340|DPOD1_HUMAN DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1
PE=1 SV=2
Length = 1107
Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 131/567 (23%), Positives = 243/567 (42%), Gaps = 87/567 (15%)
Query: 167 NKDSIHEAEITHPD------CSKSSQIDFNPDLFKSFIR-----KQLETPKRRICD-SYA 214
++DS E+T P CS+ S ++ F+R +L P RR+ +
Sbjct: 173 SRDSRGGRELTGPAVLAVELCSRESMFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIR 232
Query: 215 IDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYD---EVKA 271
+ + + Y+ +D E+ V+ + +E+ A AL + A E
Sbjct: 233 VAGLGTPSFAPYEANVDF--EIRFMVDTDIVGCNWLELPAGKYALRLKEKATQCQLEADV 290
Query: 272 IFYYLYTCPPEED-RKVGIILI--------GQESELPEVRTKPI----QMNFVSNEKELF 318
++ + + PPE +++ + + G++ PE P+ + E E F
Sbjct: 291 LWSDVVSHPPEGPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPF 350
Query: 319 STFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYE 378
+R P ++G +++++ E++L + +R DPD++ GY
Sbjct: 351 LRLALTLRPCAP--ILGAKVQSYE-----------KEEDLLQAWSTFIRIMDPDVITGYN 397
Query: 379 IETLSWGYLLERGYVLGLNLNQELSRITEV---------EKRNSSRDEVKNTQLQMPGRI 429
I+ YL+ R L + L R+ + + + + R + K + M GR+
Sbjct: 398 IQNFDLPYLISRAQTLKVQTFPFLGRVAGLCSNIRDSSFQSKQTGRRDTKV--VSMVGRV 455
Query: 430 VINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLI 489
+++ ++L E L+SYT + +H L E+ ++T + + V Y +
Sbjct: 456 QMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQNGNDQTRRRLAV--YCL 513
Query: 490 RVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSP 548
+ + +RL+E+L + EMAR+ G+ +LSRG Q +V S +LR + + P
Sbjct: 514 KDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLM--P 571
Query: 549 SIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEH 606
+K + ++EP Y PI LDF SLYPS+++A+N C++T L G +
Sbjct: 572 VVKSEGGEDYTGAT--VIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQK 629
Query: 607 LGVS-DSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRL 665
LG++ D F IR +P+G FV S+R G+LP++L+ +L R
Sbjct: 630 LGLTEDQF----------IR-----------TPTGDEFVKTSVRKGLLPQILENLLSARK 668
Query: 666 MVKQSMKEYKFSESLRNLTMLNSMLLI 692
K + K ++ LR + L +
Sbjct: 669 RAKAELA--KETDPLRRQVLDGRQLAL 693
Score = 43.9 bits (102), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 29/41 (70%), Gaps = 2/41 (4%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVSD 149
Y PI LDF SLYPS+++A+N C++T L G + LG+++
Sbjct: 594 YDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTE 634
>sp|Q54N97|DPOD1_DICDI DNA polymerase delta catalytic subunit OS=Dictyostelium discoideum
GN=pold1 PE=3 SV=1
Length = 1104
Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 92/330 (27%), Positives = 155/330 (46%), Gaps = 35/330 (10%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI-TEVEKRNS 413
E++L + + V + DPD++IGY I YL+ R L + L RI T + K S
Sbjct: 379 EEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPEFALLGRIKTTISKIKS 438
Query: 414 SRDEVKN------TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
+R N ++ MPGR +L + ++ + L SY+ N+ H L E+ + +
Sbjct: 439 TRFSSSNLGTRESKEISMPGRTQFDLMQAIQRDHKLTSYSLNNVSAHFLKEQKEDVHFSI 498
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
++ + + V Y I+ + +RL+++L + +EMAR+ G+ +L RG
Sbjct: 499 ISDLQNGTDDDRRRLAV--YCIKDAVLPMRLLDKLMILINYTEMARVTGVPLSYLLGRGE 556
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
+V S + R + + NF+ P+ K + +++EP Y PI LDF SLY
Sbjct: 557 GIKVLSQLYRKAMVENFLI--PTYKVTGKGEKFQGA-IVIEPTPGFYDTPIATLDFTSLY 613
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNL-TISPSGVAFVD 645
PS+++A+N C+ST L S KKL + T +P G F+
Sbjct: 614 PSIMMAHNLCYSTLL---------------------SAEEAKKLPPEIYTTTPFGDHFIK 652
Query: 646 KSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+ G+LP++L+E+L R K +K K
Sbjct: 653 SDTKKGLLPRILEELLSARKKAKDELKNEK 682
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 23/34 (67%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVE 143
Y PI LDF SLYPS+++A+N C+ST L E
Sbjct: 599 FYDTPIATLDFTSLYPSIMMAHNLCYSTLLSAEE 632
>sp|P97283|DPOD1_MESAU DNA polymerase delta catalytic subunit OS=Mesocricetus auratus
GN=POLD1 PE=2 SV=1
Length = 1103
Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 100/398 (25%), Positives = 178/398 (44%), Gaps = 59/398 (14%)
Query: 293 GQESELPEVRTKPI----QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLE 348
G++ PE P+ + E E F +R P ++G +++++
Sbjct: 317 GRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAP--ILGAKVQSYE------ 368
Query: 349 RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEV 408
E++L + + DPD++ GY I+ YL+ R L ++ L R+T +
Sbjct: 369 -----REEDLLQAWPNFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGL 423
Query: 409 EKRNSSRDEVKNTQ---------LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 459
R++ RD ++ + M GR+ +++ ++L E L+SYT + +H L E+
Sbjct: 424 --RSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREHKLRSYTLNAVSFHFLGEQ 481
Query: 460 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQF 518
++T + + V Y +R + +RL+E+L + EMAR+ G+
Sbjct: 482 KEDVQHSIITDLQNGNEQTRRRLAV--YCLRDAFLPLRLLERLMVLVNNVEMARVTGVPL 539
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
+LSRG Q +V S +LR + + P +K + ++EP Y PI
Sbjct: 540 GYLLSRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVPIA 595
Query: 579 VLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQQNLT 635
LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 596 TLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF---------------------I 634
Query: 636 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+P+G FV S+R G+LP++L+ +L R K + +
Sbjct: 635 KTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ 672
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF 151
Y PI LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 590 YDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF 633
>sp|P52431|DPOD1_MOUSE DNA polymerase delta catalytic subunit OS=Mus musculus GN=Pold1
PE=1 SV=2
Length = 1105
Score = 116 bits (291), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 98/398 (24%), Positives = 179/398 (44%), Gaps = 59/398 (14%)
Query: 293 GQESELPEVRTKPI----QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLE 348
G++ PE P+ + E E F +R P ++G +++++
Sbjct: 319 GRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAP--ILGAKVQSYE------ 370
Query: 349 RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEV 408
E++L + + + DPD++ GY I+ YL+ R L ++ L R+T +
Sbjct: 371 -----REEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDRFPFLGRVTGL 425
Query: 409 EKRNSSRDEVKNTQ---------LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 459
R++ RD ++ + M GR+ +++ ++L E L+SYT + +H L E+
Sbjct: 426 --RSNIRDSSFQSRQVGRRDSKVISMVGRVQMDMLQVLLREHKLRSYTLNAVSFHFLGEQ 483
Query: 460 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQF 518
++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 484 KEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEMARVTGVPL 541
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
+L+RG Q +V S +LR + + P +K + ++EP Y PI
Sbjct: 542 GYLLTRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGSEDYTGAT--VIEPLKGYYDVPIA 597
Query: 579 VLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQQNLT 635
LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 598 TLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF---------------------I 636
Query: 636 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+P+G FV S+R G+LP++L+ +L R K + +
Sbjct: 637 KTPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ 674
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF 151
Y PI LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 592 YDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF 635
>sp|O54747|DPOD1_RAT DNA polymerase delta catalytic subunit OS=Rattus norvegicus
GN=Pold1 PE=2 SV=1
Length = 1103
Score = 116 bits (290), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 99/398 (24%), Positives = 178/398 (44%), Gaps = 59/398 (14%)
Query: 293 GQESELPEVRTKPI----QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLE 348
G++ PE P+ + E E F +R P ++G +++++
Sbjct: 317 GRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAP--ILGAKVQSYE------ 368
Query: 349 RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEV 408
E++L + + DPD++ GY I+ YL+ R L ++ L R+T +
Sbjct: 369 -----REEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDRFPFLGRVTGL 423
Query: 409 EKRNSSRDEVKNTQ---------LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 459
R++ RD ++ + M GR+ +++ ++L E L+SYT + +H L E+
Sbjct: 424 --RSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQ 481
Query: 460 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQF 518
++T + + V Y ++ + +RL+E+L + EMAR+ G+
Sbjct: 482 KEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEMARVTGVPL 539
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
+LSRG Q +V S +LR + + P +K + ++EP Y PI
Sbjct: 540 GYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVPIA 595
Query: 579 VLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSFPFGCIDLNVSIRSLKKLQQNLT 635
LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 596 TLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF---------------------I 634
Query: 636 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+P+G FV S+R G+LP++L+ +L R K + +
Sbjct: 635 KTPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ 672
Score = 43.1 bits (100), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 29/44 (65%), Gaps = 3/44 (6%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF 151
Y PI LDF SLYPS+++A+N C++T L G + LG+ D F
Sbjct: 590 YDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEF 633
>sp|P03198|DPOL_EBVB9 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
B95-8) GN=BALF5 PE=1 SV=1
Length = 1015
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 28/261 (10%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQ----ELSRITEV 408
+E ++ F + +R +I+ GY + W Y+L+R ++ +N + EV
Sbjct: 355 SELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINPASLGKIRAGGVCEV 414
Query: 409 EKRNSSRDEV--KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL--------HE 458
+ + + NT++++ G I I+++ + R +++L Y + + H+L ++
Sbjct: 415 RRPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAKKEDVHYK 474
Query: 459 RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 518
IP +L E R L + + L+ + L+ +E+A++ I
Sbjct: 475 EIP----RLFAAGPEGRRRLGMYCVQDSALV-----MDLLNHFVIHVEVAEIAKIAHIPC 525
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
VL G Q RV S +L ++ NF+ PS R + +++P S Y P++
Sbjct: 526 RRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGYQGAT----VIQPLSGFYNSPVL 581
Query: 579 VLDFQSLYPSVIIAYNYCFST 599
V+DF SLYPS+I A+N C+ST
Sbjct: 582 VVDFASLYPSIIQAHNLCYST 602
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
Query: 101 FPSSSSRDR------------LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
PS+S RD Y P++V+DF SLYPS+I A+N C+ST
Sbjct: 554 MPSASDRDGYQGATVIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYST 602
>sp|Q1HVC1|DPOL_EBVA8 DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain
AG876) GN=BALF5 PE=3 SV=1
Length = 1015
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 28/261 (10%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQ----ELSRITEV 408
+E ++ F + +R +I+ GY + W Y+L+R ++ +N + EV
Sbjct: 355 SELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINPASLGKIRAGGVCEV 414
Query: 409 EKRNSSRDEV--KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL--------HE 458
+ + + NT++++ G I I+++ + R +++L Y + + H+L ++
Sbjct: 415 RRPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAKKEDVHYK 474
Query: 459 RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 518
IP +L E R L + + L+ + L+ +E+A++ I
Sbjct: 475 EIP----RLFAAGPEGRRRLGMYCVQDSALV-----MDLLNHFVIHVEVAEIAKIAHIPC 525
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
VL G Q RV S +L ++ NF+ PS R + +++P S Y P++
Sbjct: 526 RRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGYQGAT----VIQPLSGFYNSPVL 581
Query: 579 VLDFQSLYPSVIIAYNYCFST 599
V+DF SLYPS+I A+N C+ST
Sbjct: 582 VVDFASLYPSIIQAHNLCYST 602
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
Query: 101 FPSSSSRDR------------LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
PS+S RD Y P++V+DF SLYPS+I A+N C+ST
Sbjct: 554 MPSASDRDGYQGATVIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYST 602
>sp|Q3KSP1|DPOL_EBVG DNA polymerase catalytic subunit OS=Epstein-Barr virus (strain GD1)
GN=BALF5 PE=3 SV=1
Length = 1015
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/261 (24%), Positives = 122/261 (46%), Gaps = 28/261 (10%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQ----ELSRITEV 408
+E ++ F + +R +I+ GY + W Y+L+R ++ +N + EV
Sbjct: 355 SELDMLYAFFQLIRDLSVEIVTGYNVANFDWPYILDRARHIYSINPASLGKIRAGGVCEV 414
Query: 409 EKRNSSRDEV--KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL--------HE 458
+ + + NT++++ G I I+++ + R +++L Y + + H+L ++
Sbjct: 415 RRPHDAGKGFLRANTKVRITGLIPIDMYAVCRDKLSLSDYKLDTVARHLLGAKKEDVHYK 474
Query: 459 RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 518
IP +L E R L + + L+ + L+ +E+A++ I
Sbjct: 475 EIP----RLFAAGPEGRRRLGMYCVQDSALV-----MDLLNHFVIHVEVAEIAKIAHIPC 525
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
VL G Q RV S +L ++ NF+ PS R + +++P S Y P++
Sbjct: 526 RRVLDDGQQIRVFSCLLAAAQKENFILPMPSASDRDGYQGAT----VIQPLSGFYNSPVL 581
Query: 579 VLDFQSLYPSVIIAYNYCFST 599
V+DF SLYPS+I A+N C+ST
Sbjct: 582 VVDFASLYPSIIQAHNLCYST 602
Score = 43.5 bits (101), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 28/49 (57%), Gaps = 12/49 (24%)
Query: 101 FPSSSSRDR------------LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
PS+S RD Y P++V+DF SLYPS+I A+N C+ST
Sbjct: 554 MPSASDRDGYQGATVIQPLSGFYNSPVLVVDFASLYPSIIQAHNLCYST 602
>sp|P24907|DPOL_SHV21 DNA polymerase OS=Saimiriine herpesvirus 2 (strain 11) GN=9 PE=3
SV=1
Length = 1009
Score = 89.0 bits (219), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 83/358 (23%), Positives = 158/358 (44%), Gaps = 55/358 (15%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE---- 409
+E ++ F +R ++ +I+ GY I YL++R + N +LS + V+
Sbjct: 345 SEIDMLHGFFSLIRDFNVEIITGYNISNFDLPYLIDRATQI---YNIKLSDYSRVKTGSI 401
Query: 410 -KRNSSRDEVKN-----TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLH 463
+ ++ +D +++++ G I I+++ + + +++L +Y + + H + +
Sbjct: 402 FQVHTPKDTGNGFMRSVSKIKISGIIAIDMYIVCKDKLSLSNYKLDTVANHCIGAKKEDV 461
Query: 464 SWK----LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 519
S+K L E R + + ++ L+ ++L++ SE+A+L I
Sbjct: 462 SYKDIMPLFMSGPEGRAKIGLYCVIDSVLV-----MKLLKFFMIHVEISEIAKLAKIPTR 516
Query: 520 EVLSRGSQFRVESIMLRLSRLNNFV-AVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
VL+ G Q RV S +L +R N++ VS + A ++ P Y + ++
Sbjct: 517 RVLTDGQQIRVFSCLLAAARAENYILPVSNDVNADGFQGAT-----VINPIPGFYNNAVL 571
Query: 579 VLDFQSLYPSVIIAYNYCFST-----CLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQN 633
V+DF SLYPS+I A+N C+ST L HL SD +
Sbjct: 572 VVDFASLYPSIIQAHNLCYSTLIPHHALHNYPHLKSSD-------------------YET 612
Query: 634 LTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
+S + FV K I+ +L ++L L R ++Q + E E L T+L+ L
Sbjct: 613 FMLSSGPIHFVKKHIQASLLSRLLTVWLSKRKAIRQKLAE---CEDLDTKTILDKQQL 667
Score = 40.0 bits (92), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 27/45 (60%), Gaps = 5/45 (11%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST-----CLGRVEHLGVSD 149
Y + ++V+DF SLYPS+I A+N C+ST L HL SD
Sbjct: 565 FYNNAVLVVDFASLYPSIIQAHNLCYSTLIPHHALHNYPHLKSSD 609
>sp|Q56366|DPOL_THES9 DNA polymerase OS=Thermococcus sp. (strain 9oN-7) GN=pol PE=1 SV=1
Length = 775
Score = 88.6 bits (218), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 84/322 (26%), Positives = 142/322 (44%), Gaps = 38/322 (11%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS EKE+ F+ VR+ DPD+LI Y + + YL +R LG+ L R K
Sbjct: 184 VSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFT--LGRDGSEPKI 241
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 471
D +++ GRI +L+ ++R +NL +YT E + V + + +
Sbjct: 242 QRMGDRF---AVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQA 298
Query: 472 WEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE 531
WE L + V Y + + + + +F ++++RL G ++V + VE
Sbjct: 299 WESGEGLER---VARYSMEDAKVTYELGR-EFFPMEAQLSRLIGQSLWDVSRSSTGNLVE 354
Query: 532 SIMLRLS-RLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVI 590
+LR + + N P ++ A R + + EPE L+ D I+ LDF+SLYPS+I
Sbjct: 355 WFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVKEPERGLW-DNIVYLDFRSLYPSII 413
Query: 591 IAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRC 650
I +N T L R GC + +V+ K ++
Sbjct: 414 ITHNVSPDT-LNRE-----------GCKEYDVAPEVGHKFCKDFP--------------- 446
Query: 651 GILPKMLQEILDTRLMVKQSMK 672
G +P +L ++L+ R +K+ MK
Sbjct: 447 GFIPSLLGDLLEERQKIKRKMK 468
>sp|Q9DKT8|DPOL_ELHVK DNA polymerase catalytic subunit OS=Elephantid herpesvirus 1
(isolate Asian elephant/Berlin/Kiba/1998) PE=3 SV=1
Length = 1041
Score = 87.4 bits (215), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 79/330 (23%), Positives = 150/330 (45%), Gaps = 32/330 (9%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER----GYVLGLNLNQELSRITEV 408
++E EL F+ VR + P+ + GY I Y++ R G + R+T
Sbjct: 379 ASEYELIESFLTFVRVYGPNFITGYNINAFDIPYVIGRCRYYNIQCGAFTKMKRGRMTCF 438
Query: 409 EKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLL 468
+ S + + ++ + G ++I+++R+ +V+ ++ + ++ +L E+ S+K +
Sbjct: 439 KGMESFLNRCQ-CKVTISGIVIIDMYRVCMDKVSAPNHKLDTVVDMLLGEKKHSVSYKQI 497
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGII-RLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 527
+ R V Y + + ++ +L +L F S +ARL I +V+ G Q
Sbjct: 498 PVLF--RRDDDGRAVVGAYCVHDSVLVHKLFCKLLFHYEASAIARLSNISINKVVFDGQQ 555
Query: 528 FRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYP 587
R+ + ML +R + PSI + + +LEP++ Y P+ V DF SLYP
Sbjct: 556 SRIFTCMLAAARREGLII--PSIDEAGEDTYQGAT--VLEPKTGFYNTPVAVFDFASLYP 611
Query: 588 SVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVA--FVD 645
S+I AYN C+ T ++D++ + SL++ + + +G FV
Sbjct: 612 SIIQAYNLCYCTL--------ITDNY----------VASLREEDITMVTTNTGRVHRFVK 653
Query: 646 KSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+R IL ++L L R V++ +K K
Sbjct: 654 PHVRKSILSQLLTSWLAERKAVREKLKHCK 683
Score = 40.4 bits (93), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 19/28 (67%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
Y P+ V DF SLYPS+I AYN C+ T
Sbjct: 596 FYNTPVAVFDFASLYPSIIQAYNLCYCT 623
>sp|P56689|DPOL_THEGO DNA polymerase OS=Thermococcus gorgonarius GN=pol PE=1 SV=1
Length = 773
Score = 85.5 bits (210), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 81/326 (24%), Positives = 148/326 (45%), Gaps = 46/326 (14%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS EKE+ F++ V++ DPD+LI Y + + YL +R LG+ + R
Sbjct: 184 VSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKF---------ILGR 234
Query: 412 NSSRDEVKNT----QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
S +++ +++ GRI +L+ ++R +NL +YT E + + + +
Sbjct: 235 EGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKVYAEE 294
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 527
+ WE L + V Y + + + + +F ++++RL G ++V +
Sbjct: 295 IAQAWETGEGLER---VARYSMEDAKVTYELGK-EFFPMEAQLSRLVGQSLWDVSRSSTG 350
Query: 528 FRVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
VE +LR + N +A + P ++ A R + + EPE L+ + I+ LDF+SLY
Sbjct: 351 NLVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLWEN-IVYLDFRSLY 409
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDK 646
PS+II +N T L R GC + +V+ + K ++
Sbjct: 410 PSIIITHNVSPDT-LNRE-----------GCEEYDVAPQVGHKFCKDFP----------- 446
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMK 672
G +P +L ++L+ R VK+ MK
Sbjct: 447 ----GFIPSLLGDLLEERQKVKKKMK 468
>sp|Q9HH05|DPOL_THEHY DNA polymerase (Fragment) OS=Thermococcus hydrothermalis GN=pol
PE=1 SV=1
Length = 1668
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 81/327 (24%), Positives = 147/327 (44%), Gaps = 48/327 (14%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS EKE+ F++ V++ DPD+LI Y + + YL +R +G+ +R
Sbjct: 151 VSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRCEKIGIKFTL---------RR 201
Query: 412 NSSRDEVKNT----QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
+ S +++ +++ GRI +L+ ++R +NL +YT E + V +
Sbjct: 202 DGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGTPKEKVYPEE 261
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 527
+T WE L + V Y + + + + +F ++++RL G ++V +
Sbjct: 262 ITTAWETGEGLER---VARYSMEDAKVTYELGR-EFFPMEAQLSRLIGQSLWDVSRSSTG 317
Query: 528 FRVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
VE +LR + N +A + P ++ A R + + EPE L+ D I+ LDF SLY
Sbjct: 318 NLVEWFLLRKAYERNEIAPNKPDERELARRRGGYAGGYVKEPERGLW-DNIVYLDFMSLY 376
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPF-GCIDLNVSIRSLKKLQQNLTISPSGVAFVD 645
PS+II +N D+F GC + + + + K +++
Sbjct: 377 PSIIITHNVS-------------PDTFNREGCKEYDTAPQVGHKFCKDVQ---------- 413
Query: 646 KSIRCGILPKMLQEILDTRLMVKQSMK 672
G +P +L +LD R +K+ MK
Sbjct: 414 -----GFIPSLLGALLDERQKIKKRMK 435
Score = 40.0 bits (92), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 8/126 (6%)
Query: 231 DNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPE-EDRKVGI 289
D + ++ V+ Y + + + I + L+ P +E+K + + + T E E+ G
Sbjct: 65 DEIRRHSAVVDIYEYDIPFAKRYLIDKGLI-PMEGDEELKMMSFDIETLYHEGEEFGTGP 123
Query: 290 ILI---GQESELPEVRTKPIQMNFV---SNEKELFSTFIENVRQWDPDILIGYEIETFSW 343
IL+ E E + K I + +V S EKE+ F++ V++ DPD+LI Y + F +
Sbjct: 124 ILMISYADEGEARVITWKKIDLPYVEVVSTEKEMIKRFLKVVKEKDPDVLITYNGDNFDF 183
Query: 344 GYLLER 349
YL +R
Sbjct: 184 AYLKKR 189
>sp|Q7SIG7|DPOL_DESST DNA polymerase OS=Desulfurococcus sp. (strain Tok) GN=pol PE=1 SV=1
Length = 773
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 148/326 (45%), Gaps = 46/326 (14%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS EKE+ F++ +++ DPD+LI Y + + YL +R +LG+ + R
Sbjct: 184 VSTEKEMIKRFLKVIQEKDPDVLITYNGDNFDFAYLKKRSEMLGVKF---------ILGR 234
Query: 412 NSSRDEVKNT----QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
+ S +++ +++ GRI +L+ ++R +NL +YT E + V + +
Sbjct: 235 DGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLETVYEPVFGQPKEKVYAEE 294
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 527
+ WE L + V Y + + + +F ++++RL G ++V +
Sbjct: 295 IARAWESGEGLER---VARYSMEDAKATYELGK-EFFPMEAQLSRLVGQSLWDVSRSSTG 350
Query: 528 FRVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
VE +LR + N VA + P ++ A + + EPE L+ + I+ LD++SLY
Sbjct: 351 NLVEWFLLRKAYERNDVAPNKPDERELARRTESYAGGYVKEPEKGLWEN-IVYLDYKSLY 409
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDK 646
PS+II +N T L R GC + +V+ + + ++
Sbjct: 410 PSIIITHNVSPDT-LNRE-----------GCREYDVAPQVGHRFCKDFP----------- 446
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMK 672
G +P +L ++L+ R VK+ MK
Sbjct: 447 ----GFIPSLLGDLLEERQKVKKKMK 468
>sp|Q9HH84|DPOL_THEG8 DNA polymerase OS=Thermococcus sp. (strain GE8) GN=pol PE=3 SV=1
Length = 1699
Score = 82.4 bits (202), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 80/327 (24%), Positives = 152/327 (46%), Gaps = 48/327 (14%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS EKE+ F+ V++ DPD+LI Y + + YL R LG+ + R
Sbjct: 184 VSTEKEMIKRFLRVVKEKDPDVLITYNGDNFDFAYLKRRSEKLGVKF---------ILGR 234
Query: 412 NSSRDEVKNT----QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPLHSWK 466
+ S +++ +++ GRI +L+ ++R +NL +YT E + + + + +++ +
Sbjct: 235 DGSEPKIQRMGDRFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGKPKEKVYAEE 294
Query: 467 LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
+ T WE L + V Y + + + + +F ++++RL G ++V +
Sbjct: 295 IATA-WETGEGLER---VARYSMEDAKVTFELGK-EFFPMEAQLSRLIGQSLWDVSRSST 349
Query: 527 QFRVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSL 585
VE +LR + N +A + P ++ A R + + EPE L+ + I+ LDF+SL
Sbjct: 350 GNLVEWFLLRKAYERNELAPNKPDERELARRRQSYAGGYVKEPERGLWNN-IVYLDFRSL 408
Query: 586 YPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVD 645
YPS+II +N T L R GC + +V+ + K ++
Sbjct: 409 YPSIIITHNVSPDT-LNRE-----------GCKEYDVAPQVGHKFCKDFP---------- 446
Query: 646 KSIRCGILPKMLQEILDTRLMVKQSMK 672
G +P +L ++L+ R +K+ M+
Sbjct: 447 -----GFIPSLLGDLLEERQKIKRKMR 468
>sp|P30317|DPOL_THELI DNA polymerase OS=Thermococcus litoralis GN=pol PE=1 SV=1
Length = 1702
Score = 81.6 bits (200), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 120/251 (47%), Gaps = 22/251 (8%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VSNE+E+ F++ V++ DPD++I Y + YL++R LG+ L V R
Sbjct: 184 VSNEREMIKRFVQVVKEKDPDVIITYNGDNFDLPYLIKRAEKLGVRL---------VLGR 234
Query: 412 NSSRDEVKNTQL------QMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
+ E K ++ ++ GRI +L+ ++R +NL +YT E + VL +
Sbjct: 235 DKEHPEPKIQRMGDSFAVEIKGRIHFDLFPVVRRTINLPTYTLEAVYEAVLGKTKSKLGA 294
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRG 525
+ + WE + K R T + +F +E+A+L G ++V
Sbjct: 295 EEIAAIWETEESMKKLAQYSMEDARATYEL----GKEFFPMEAELAKLIGQSVWDVSRSS 350
Query: 526 SQFRVESIMLRLSRLNNFVAVSPSIKQ--RAHMRAPESLPLILEPESRLYTDPIIVLDFQ 583
+ VE +LR++ N +A + ++ + +R + EPE L+ + II LDF+
Sbjct: 351 TGNLVEWYLLRVAYARNELAPNKPDEEEYKRRLRTTYLGGYVKEPEKGLWEN-IIYLDFR 409
Query: 584 SLYPSVIIAYN 594
SLYPS+I+ +N
Sbjct: 410 SLYPSIIVTHN 420
>sp|O59610|DPOL_PYRHO DNA polymerase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM
12428 / JCM 9974 / NBRC 100139 / OT-3) GN=pol PE=3 SV=1
Length = 1235
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 83/326 (25%), Positives = 148/326 (45%), Gaps = 39/326 (11%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS+E+E+ I +++ DPD++I Y + + YLL+R LG+ L L R K
Sbjct: 184 VSSEREMIKRLIRVIKEKDPDVIITYNGDNFDFPYLLKRAEKLGIKLL--LGRDNSEPKM 241
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 471
D + +++ GRI +L+ ++R +NL +YT E + + + +
Sbjct: 242 QKMGDSL---AVEIKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKPKEKVYADEIAKA 298
Query: 472 WEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE 531
WE L + V Y + + + + +F +++ARL G ++V + VE
Sbjct: 299 WETGEGLER---VAKYSMEDAKVTYELGR-EFFPMEAQLARLVGQPVWDVSRSSTGNLVE 354
Query: 532 SIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP--LILEPESRLYTDPIIVLDFQSLYPSV 589
+LR + N +A + ++ R ES + EPE L+ + I+ LDF+SLYPS+
Sbjct: 355 WFLLRKAYERNELAPNKPDEKEYERRLRESYEGGYVKEPEKGLW-EGIVSLDFRSLYPSI 413
Query: 590 IIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIR 649
II +N T L R GC + +V+ + + ++
Sbjct: 414 IITHNVSPDT-LNRE-----------GCEEYDVAPKVGHRFCKDFP-------------- 447
Query: 650 CGILPKMLQEILDTRLMVKQSMKEYK 675
G +P +L ++L+ R +K+ MKE K
Sbjct: 448 -GFIPSLLGQLLEERQKIKKRMKESK 472
>sp|Q9E6N9|DPOL_GAHVM DNA polymerase catalytic subunit OS=Gallid herpesvirus 2 (strain
Chicken/Md5/ATCC VR-987) GN=MDV043 PE=3 SV=1
Length = 1220
Score = 81.3 bits (199), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 88/369 (23%), Positives = 157/369 (42%), Gaps = 74/369 (20%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRN- 412
+E EL F+ ++Q+ P+ + GY I W +++ + L N L V ++
Sbjct: 432 SEFELLLAFMTFIKQYAPEFVTGYNIVNFDWAFIVTK---LTTVYNMRLDGYGVVNQKGM 488
Query: 413 ------SSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWK 466
+ K + + G I ++++ + ++ LQSY + + L ER S+K
Sbjct: 489 FKVWDAGTNRFQKKGKFKATGMITLDMYSIATEKLKLQSYKLDVVAEAALGERKKELSYK 548
Query: 467 LLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVL 522
+ + E R + ++ + L+ + I L+ S +A+L GI + +
Sbjct: 549 EIPSHFAAGPEKRGIIGEYCLQDSLLVGKL-FFKYIPHLEL----SAIAKLAGILLSKAI 603
Query: 523 SRGSQFRVESIMLRLSRLNNFVAV-------------------------SP-----SIKQ 552
G Q RV + +LRL+R + F+ SP +IKQ
Sbjct: 604 FDGQQIRVYTCLLRLARSHGFILPEKNKKFAETVSLTCEEDQTEICEHDSPQEPIHNIKQ 663
Query: 553 RA--HMRAPESLPL----ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEH 606
+ H + ++ +L+P S + DP++V DF SLYPS+I A+N CF+T
Sbjct: 664 SSLCHSNSGRTIGYQGAKVLDPISGFHVDPVMVFDFASLYPSIIQAHNLCFTTL------ 717
Query: 607 LGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSG--VAFVDKSIRCGILPKMLQEILDTR 664
V D D N+S +L+ L I+ G + FV IR +L +L++ L R
Sbjct: 718 --VHD-------DTNLS--NLRPQDDYLEINVQGKLLRFVKPHIRESLLAILLKDWLAMR 766
Query: 665 LMVKQSMKE 673
++ + E
Sbjct: 767 KAIRAKIPE 775
Score = 42.4 bits (98), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
+ DP++V DF SLYPS+I A+N CF+T
Sbjct: 689 FHVDPVMVFDFASLYPSIIQAHNLCFTT 716
>sp|Q9HH06|DPOL_PYRGL DNA polymerase OS=Pyrococcus glycovorans GN=pol PE=3 SV=1
Length = 775
Score = 80.5 bits (197), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 151/329 (45%), Gaps = 45/329 (13%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS+E+E+ F++ +R+ DPD++I Y ++ YL++R LG+ L L R K
Sbjct: 184 VSSEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAEKLGIKLP--LGRDGSEPKM 241
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL---HERIPLHSWKLL 468
D T +++ GRI +L+ ++R +NL +YT E + + E++ H +
Sbjct: 242 QRLGD---MTAVEIKGRIHFDLYHVIRRTINLPTYTLEAVYEAIFGKPKEKVYAHE---I 295
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQF 528
WE L + V Y + + + + +F ++++RL G ++V +
Sbjct: 296 AEAWETGKGLER---VAKYSMEDAKVTYELGR-EFFPMEAQLSRLVGQPLWDVSRSSTGN 351
Query: 529 RVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP--LILEPESRLYTDPIIVLDFQSLY 586
VE +LR + N +A + ++ R ES + EPE L+ + ++ LDF+SLY
Sbjct: 352 LVEWYLLRKAYERNELAPNKPDEREYERRLRESYAGGYVKEPEKGLW-EGLVSLDFRSLY 410
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDK 646
PS+II +N T L R GC + +V+ K ++
Sbjct: 411 PSIIITHNVSPDT-LNRE-----------GCREYDVAPEVKHKFCKDFP----------- 447
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMKEYK 675
G +P +L+ +LD R +K+ MK K
Sbjct: 448 ----GFIPSLLKRLLDERQEIKRKMKASK 472
>sp|O36363|DPOL_ALHV1 DNA polymerase catalytic subunit OS=Alcelaphine herpesvirus 1
(strain C500) GN=9 PE=3 SV=1
Length = 1026
Score = 79.3 bits (194), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 81/365 (22%), Positives = 152/365 (41%), Gaps = 63/365 (17%)
Query: 313 NEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPD 372
+E +L F +R + +++ GY I F + Y+L R +NV P+
Sbjct: 375 SEMDLLYGFFTLLRDYGIEMITGYNICNFDFPYILNR-------------AQNVYNIKPE 421
Query: 373 ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVIN 432
+ +L + Y + G + R+ S+ ++M G +VI+
Sbjct: 422 DFSKTKTNSLFYVYTPQEGNFM----------------RSHSK-------VKMSGVVVID 458
Query: 433 LWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWK----LLTCWWEHRTHLYKWMTVEHYL 488
++++ R ++NL +Y + L E+ S+K L + R L + + L
Sbjct: 459 MYQVCRDKLNLSNYKLNTVAKECLGEKKNDVSYKDIPILFKGSSKDRAKLGMYCVQDAVL 518
Query: 489 IRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSP 548
+ I L++ +E+A++ I VLS G Q RV + +L ++ +++ P
Sbjct: 519 V-----IDLLKHFMTHIEITEIAKIANIPTRRVLSDGQQIRVFTCLLAAAQERDYILPMP 573
Query: 549 SIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLG 608
+ + ++ P S Y P++V+DF SLYPS+I A+N C+ST + +
Sbjct: 574 VTGSQEGYQGAT----VINPISGFYNTPVLVVDFASLYPSIIQAHNLCYSTLIKQ----- 624
Query: 609 VSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVK 668
D F + N + IS V FV K +L +L+ L R +K
Sbjct: 625 -QDLPKFTNLTAND--------YETFMISGGPVHFVKKHKTESLLASLLKTWLAKRKSIK 675
Query: 669 QSMKE 673
+ +++
Sbjct: 676 KELEQ 680
Score = 41.6 bits (96), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 24/32 (75%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 141
Y P++V+DF SLYPS+I A+N C+ST + +
Sbjct: 593 FYNTPVLVVDFASLYPSIIQAHNLCYSTLIKQ 624
>sp|P61876|DPOL_PYRWO DNA polymerase OS=Pyrococcus woesei GN=pol PE=1 SV=1
Length = 775
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 146/324 (45%), Gaps = 39/324 (12%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS+E+E+ F+ +R+ DPDI++ Y ++ + YL +R LG+ L + R K
Sbjct: 184 VSSEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT--IGRDGSEPKM 241
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 471
D T +++ GRI +L+ ++ +NL +YT E + + + +
Sbjct: 242 QRIGD---MTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIFGKPKEKVYADEIAKA 298
Query: 472 WEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE 531
WE +L + V Y + + + +F+ +++RL G ++V + VE
Sbjct: 299 WESGENLER---VAKYSMEDAKATYELGK-EFLPMEIQLSRLVGQPLWDVSRSSTGNLVE 354
Query: 532 SIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP--LILEPESRLYTDPIIVLDFQSLYPSV 589
+LR + N VA + ++ R ES + EPE L+ + I+ LDF++LYPS+
Sbjct: 355 WFLLRKAYERNEVAPNKPSEEEYQRRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSI 413
Query: 590 IIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIR 649
II +N T +E GC + +++ + K +++
Sbjct: 414 IITHNVSPDTL--NLE----------GCKNYDIAPQVGHKFCKDIP-------------- 447
Query: 650 CGILPKMLQEILDTRLMVKQSMKE 673
G +P +L +L+ R +K MKE
Sbjct: 448 -GFIPSLLGHLLEERQKIKTKMKE 470
>sp|P61875|DPOL_PYRFU DNA polymerase OS=Pyrococcus furiosus (strain ATCC 43587 / DSM 3638
/ JCM 8422 / Vc1) GN=pol PE=1 SV=1
Length = 775
Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 79/324 (24%), Positives = 146/324 (45%), Gaps = 39/324 (12%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS+E+E+ F+ +R+ DPDI++ Y ++ + YL +R LG+ L + R K
Sbjct: 184 VSSEREMIKRFLRIIREKDPDIIVTYNGDSFDFPYLAKRAEKLGIKLT--IGRDGSEPKM 241
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 471
D T +++ GRI +L+ ++ +NL +YT E + + + +
Sbjct: 242 QRIGD---MTAVEVKGRIHFDLYHVITRTINLPTYTLEAVYEAIFGKPKEKVYADEIAKA 298
Query: 472 WEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE 531
WE +L + V Y + + + +F+ +++RL G ++V + VE
Sbjct: 299 WESGENLER---VAKYSMEDAKATYELGK-EFLPMEIQLSRLVGQPLWDVSRSSTGNLVE 354
Query: 532 SIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP--LILEPESRLYTDPIIVLDFQSLYPSV 589
+LR + N VA + ++ R ES + EPE L+ + I+ LDF++LYPS+
Sbjct: 355 WFLLRKAYERNEVAPNKPSEEEYQRRLRESYTGGFVKEPEKGLWEN-IVYLDFRALYPSI 413
Query: 590 IIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIR 649
II +N T +E GC + +++ + K +++
Sbjct: 414 IITHNVSPDTL--NLE----------GCKNYDIAPQVGHKFCKDIP-------------- 447
Query: 650 CGILPKMLQEILDTRLMVKQSMKE 673
G +P +L +L+ R +K MKE
Sbjct: 448 -GFIPSLLGHLLEERQKIKTKMKE 470
>sp|P27727|DPOLA_TRYBB DNA polymerase alpha catalytic subunit OS=Trypanosoma brucei brucei
PE=3 SV=1
Length = 1339
Score = 79.0 bits (193), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 101/402 (25%), Positives = 166/402 (41%), Gaps = 79/402 (19%)
Query: 324 NVRQWDPDILIGYEIETFSWGYLLER-HFVSNEKELFSIFIENVRQWDPDILIGYEIETL 382
VRQ PD + ++ET+ + H NE+ L + F E + DPDI++G+ I
Sbjct: 475 GVRQLSPDAPLPLDLETYCLSKRMPGVHRFINERALLTWFAETLAALDPDIIVGHNI--- 531
Query: 383 SWGYLLERGYVLGLNLNQEL-----SRITEVEKRNSSRDEVKNTQLQMP-----GRIVIN 432
GY +E LN QEL S I ++ R R + N L + GR+V++
Sbjct: 532 -IGYTVE----TLLNRYQELNIVRWSTIGRLDVRRFPRIQGNNFNLAIEKEACVGRLVVD 586
Query: 433 LWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTV--EHYLIR 490
+ L R +Y + L + + ++R H TV + ++
Sbjct: 587 TYLLAREYYKSTNYKL-----------LSLSTQMEIKGITDNRGHFEPGSTVLVKDSMMS 635
Query: 491 VTGIIRLIEQL--------------DFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLR 536
+ ++ QL D I T + L G + L R+E ++L
Sbjct: 636 SEALCPILLQLLNCAVLSFNVASFLDVIPLTKRLTLLAGNLWSRTLYGARSERIEYLLLH 695
Query: 537 LSRLNNFVAVSPSIKQRAHMRAPES------------LPLILEPESRLYTDPIIVLDFQS 584
+N V+P K+R R E ++LEP+S LY++ I++LDF S
Sbjct: 696 A--FHNLKFVTPDKKKRDLKRGREDDDDEGKRKTKYQGGMVLEPKSGLYSEYILLLDFNS 753
Query: 585 LYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFV 644
LYPS+I +N C++T + R E+ VS P + + +S
Sbjct: 754 LYPSLIQEFNVCYTT-IDRDENT-VSAEVP--------------PPESLICLSCRAAGLP 797
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTML 686
+ ILPK+++ ++D+R +K+ MK K NL ML
Sbjct: 798 SPCLHKCILPKVIRGLVDSRREIKRMMKSEK---DPGNLAML 836
Score = 38.1 bits (87), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 23/28 (82%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
LY++ I++LDF SLYPS+I +N C++T
Sbjct: 741 LYSEYILLLDFNSLYPSLIQEFNVCYTT 768
>sp|O27276|DPOL_METTH DNA polymerase OS=Methanothermobacter thermautotrophicus (strain
ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta
H) GN=pol PE=3 SV=1
Length = 586
Score = 78.6 bits (192), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 88/347 (25%), Positives = 154/347 (44%), Gaps = 50/347 (14%)
Query: 334 IGYEIETFSWGYLLE-RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGY 392
+GYE + G L+ V +E+EL F E V PDIL+GY + + Y+ R
Sbjct: 201 MGYESVISTAGDHLDFVEVVEDERELLERFAEIVIDKKPDILVGYNSDNFDFPYITRRAA 260
Query: 393 VLG--LNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFEN 450
+LG L+L + S+I + + ++ +K T + ++L+ ++R +NL YT E
Sbjct: 261 ILGAELDLGWDGSKIRTMRRGFANATAIKGT-------VHVDLYPVMRRYMNLDRYTLER 313
Query: 451 IMYHVL-HERIPLHSWKLLTCW--WEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRT 507
+ + E+I L +L W E R L+++ L V R+ E++ +
Sbjct: 314 VYQELFGEEKIDLPGDRLWEYWDRDELRDELFRYS-----LDDVVATHRIAEKI--LPLN 366
Query: 508 SEMARLFGIQFYEVLSRGSQFRVESIMLRLS-RLNNFVAVSPSIKQRAHMRAPESL-PLI 565
E+ RL G +++ + + E ++R + + V PS + R ++ +
Sbjct: 367 LELTRLVGQPLFDISRMATGQQAEWFLVRKAYQYGELVPNKPSQSDFSSRRGRRAVGGYV 426
Query: 566 LEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIR 625
EPE L+ + I+ DF+SLYPS+II+ N T ++D C
Sbjct: 427 KEPEKGLHEN-IVQFDFRSLYPSIIISKNISPDT---------LTDDEESECY------- 469
Query: 626 SLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMK 672
++P KS R G +P ++ EIL R+ +K+ MK
Sbjct: 470 ----------VAPEYGYRFRKSPR-GFVPSVIGEILSERVRIKEEMK 505
>sp|P52367|DPOL_EHV2 DNA polymerase OS=Equine herpesvirus 2 (strain 86/87) GN=9 PE=3
SV=1
Length = 1008
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 69/276 (25%), Positives = 131/276 (47%), Gaps = 29/276 (10%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQ----ELSRITEV 408
+E +L +F +R D + + GY I + Y+++R V LNL + S I EV
Sbjct: 353 SELDLLYLFFTMIRDADVEFVTGYNISNFDFPYVIDRATQVYNLNLKEFTRVRSSSIFEV 412
Query: 409 EK-RNSSRDEVKN-TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWK 466
K +NSS ++ +++++ G + I+++++ R +++L +Y + + + + S+K
Sbjct: 413 HKPKNSSAGFMRAVSKVKVAGVVPIDMYQVCRDKLSLSNYKLDTVAGECVGAKKEDVSYK 472
Query: 467 LLTCWWEH----RTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVL 522
+ + R L + + L+ + L+ SE+A++ I VL
Sbjct: 473 EIPHLFRQGPGGRARLGLYCVKDSALV-----LDLLRYFMTHVEISEIAKIAKIPTRRVL 527
Query: 523 SRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDF 582
+ G Q RV S +L ++ ++ + + A + +I +P Y P++V+DF
Sbjct: 528 TDGQQIRVFSCLLDVAGREGYIL---PVDRHADAEGYQGATVI-DPSPGFYNTPVLVVDF 583
Query: 583 QSLYPSVIIAYNYCFST-------CLGRVEHLGVSD 611
SLYP++I A+N C+ST CL HLG D
Sbjct: 584 ASLYPTIIQAHNLCYSTMIPGDRLCLH--PHLGPGD 617
Score = 41.2 bits (95), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 9/47 (19%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST-------CLGRVEHLGVSD 149
Y P++V+DF SLYP++I A+N C+ST CL HLG D
Sbjct: 573 FYNTPVLVVDFASLYPTIIQAHNLCYSTMIPGDRLCLH--PHLGPGD 617
>sp|O93746|DPOL2_AERPE DNA polymerase 2 OS=Aeropyrum pernix (strain ATCC 700893 / DSM
11879 / JCM 9820 / NBRC 100138 / K1) GN=polB PE=3 SV=3
Length = 803
Score = 78.6 bits (192), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 77/287 (26%), Positives = 141/287 (49%), Gaps = 44/287 (15%)
Query: 329 DPDILIGY-----EIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLS 383
DP I+IG EIE +LE S++K + + F+E V+ DPD+++GY
Sbjct: 205 DPVIMIGLQQAGGEIE------ILEAEDRSDKK-VIAGFVERVKSIDPDVIVGYNQNRFD 257
Query: 384 WGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR--HEV 441
W YL+ER VLG+ L V +R+ + GR+ ++L HEV
Sbjct: 258 WPYLVERARVLGVKLA--------VGRRSVEPQPGLYGHYSVSGRLNVDLLDFAEELHEV 309
Query: 442 NLQSYTFENIMYHV----LHERIPLHSWKLLTCWWE--HRTHLYKWMTVEHYLIRVTGII 495
++ T E + ++ + ER+ L W++ W + R L K++ + V +
Sbjct: 310 KVK--TLEEVADYLGVVKIGERVTLEWWQIGEYWDDPSKREILRKYLRDD-----VRSTM 362
Query: 496 RLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLR-LSRLNNFVAVSPSIKQRA 554
L E+ F+ +E++++ G+ +V++ FR+E ++R ++L V P+ +R+
Sbjct: 363 GLAEK--FLPFGAELSQVSGLPLDQVMAASVGFRLEWRLIREAAKLGELV---PNRVERS 417
Query: 555 HMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL 601
R + ++L P+ ++ D I VLDF S+YP++++ YN T +
Sbjct: 418 EGRYAGA--IVLRPKPGVHED-IAVLDFASMYPNIMVKYNVGPDTLV 461
>sp|Q51334|DPOL_PYRSD DNA polymerase OS=Pyrococcus sp. (strain GB-D) GN=pol PE=1 SV=1
Length = 1312
Score = 78.2 bits (191), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 85/329 (25%), Positives = 151/329 (45%), Gaps = 45/329 (13%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS+E+E+ F++ +R+ DPD++I Y ++ YL++R LG+ L L R K
Sbjct: 184 VSSEREMIKRFLKVIREKDPDVIITYNGDSFDLPYLVKRAEKLGIKL--PLGRDGSEPKM 241
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL---HERIPLHSWKLL 468
D T +++ GRI +L+ ++R +NL +YT E + + E++ H +
Sbjct: 242 QRLGD---MTAVEIKGRIHFDLYHVIRRTINLPTYTLEAVYEAIFGKPKEKVYAHE---I 295
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQF 528
WE L + V Y + + + + +F ++++RL G ++V +
Sbjct: 296 AEAWETGKGLER---VAKYSMEDAKVTYELGR-EFFPMEAQLSRLVGQPLWDVSRSSTGN 351
Query: 529 RVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP--LILEPESRLYTDPIIVLDFQSLY 586
VE +LR + N +A + ++ R ES + EPE L+ + ++ LDF+SLY
Sbjct: 352 LVEWYLLRKAYERNELAPNKPDEREYERRLRESYAGGYVKEPEKGLW-EGLVSLDFRSLY 410
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDK 646
PS+II +N T L R GC + +V+ K ++
Sbjct: 411 PSIIITHNVSPDT-LNRE-----------GCREYDVAPEVGHKFCKDFP----------- 447
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMKEYK 675
G +P +L+ +LD R +K+ MK K
Sbjct: 448 ----GFIPSLLKRLLDERQEIKRKMKASK 472
>sp|P09252|DPOL_VZVD DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Dumas) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 152/362 (41%), Gaps = 78/362 (21%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG---YVLGLNLNQELSR-----I 405
+E EL F+ V+Q+ P+ GY I W +++E+ Y L L+ ++R I
Sbjct: 423 SEFELLIAFMTLVKQYAPEFATGYNIVNFDWAFIMEKLNSIYSLKLDGYGSINRGGLFKI 482
Query: 406 TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
+V K R +++++ G I ++++ + ++ L SY +++ L+E +
Sbjct: 483 WDVGKSGFQR----RSKVKINGLISLDMYAIATEKLKLSSYKLDSVAREALNESKRDLPY 538
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGII-----RLIEQLDFIGRTSEMARLFGIQFYE 520
K + ++ + + Y I+ + ++ + + L+ S +ARL I +
Sbjct: 539 KDIPGYYASGPNTRG--IIGEYCIQDSALVGKLFFKYLPHLEL----SAVARLARITLTK 592
Query: 521 VLSRGSQFRVESIMLRLSRLNNFV------------------------------AVSPSI 550
+ G Q R+ + +L L+ F+ +VSP+
Sbjct: 593 AIYDGQQVRIYTCLLGLASSRGFILPDGGYPATFEYKDVIPDVGDVEEEMDEDESVSPTG 652
Query: 551 KQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVS 610
+ + +P++ Y DP++VLDF SLYPS+I A+N CF+T
Sbjct: 653 TSSGRNVGYKG-ARVFDPDTGFYIDPVVVLDFASLYPSIIQAHNLCFTT----------- 700
Query: 611 DSFPFGCIDLNVSIRSLKKLQ----QNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLM 666
L ++ ++K+L T+ + FV ++R +L +L++ L R
Sbjct: 701 ---------LTLNFETVKRLNPSDYATFTVGGKRLFFVRSNVRESLLGVLLKDWLAMRKA 751
Query: 667 VK 668
++
Sbjct: 752 IR 753
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
Y DP++VLDF SLYPS+I A+N CF+T
Sbjct: 673 FYIDPVVVLDFASLYPSIIQAHNLCFTT 700
>sp|Q4JQU7|DPOL_VZVO DNA polymerase catalytic subunit OS=Varicella-zoster virus (strain
Oka vaccine) GN=ORF28 PE=3 SV=1
Length = 1194
Score = 77.4 bits (189), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 75/362 (20%), Positives = 152/362 (41%), Gaps = 78/362 (21%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG---YVLGLNLNQELSR-----I 405
+E EL F+ V+Q+ P+ GY I W +++E+ Y L L+ ++R I
Sbjct: 423 SEFELLIAFMTLVKQYAPEFATGYNIVNFDWAFIMEKLNSIYSLKLDGYGSINRGGLFKI 482
Query: 406 TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
+V K R +++++ G I ++++ + ++ L SY +++ L+E +
Sbjct: 483 WDVGKSGFQR----RSKVKINGLISLDMYAIATEKLKLSSYKLDSVAREALNESKRDLPY 538
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGII-----RLIEQLDFIGRTSEMARLFGIQFYE 520
K + ++ + + Y I+ + ++ + + L+ S +ARL I +
Sbjct: 539 KDIPGYYASGPNTRG--IIGEYCIQDSALVGKLFFKYLPHLEL----SAVARLARITLTK 592
Query: 521 VLSRGSQFRVESIMLRLSRLNNFV------------------------------AVSPSI 550
+ G Q R+ + +L L+ F+ +VSP+
Sbjct: 593 AIYDGQQVRIYTCLLGLASSRGFILPDGGYPATFEYKDVIPDVGDVEEEMDEDESVSPTG 652
Query: 551 KQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVS 610
+ + +P++ Y DP++VLDF SLYPS+I A+N CF+T
Sbjct: 653 TSSGRNVGYKG-ARVFDPDTGFYIDPVVVLDFASLYPSIIQAHNLCFTT----------- 700
Query: 611 DSFPFGCIDLNVSIRSLKKLQ----QNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLM 666
L ++ ++K+L T+ + FV ++R +L +L++ L R
Sbjct: 701 ---------LTLNFETVKRLNPSDYATFTVGGKRLFFVRSNVRESLLGVLLKDWLAMRKA 751
Query: 667 VK 668
++
Sbjct: 752 IR 753
Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 18/28 (64%), Positives = 23/28 (82%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
Y DP++VLDF SLYPS+I A+N CF+T
Sbjct: 673 FYIDPVVVLDFASLYPSIIQAHNLCFTT 700
>sp|Q69025|DPOL_GPCMV DNA polymerase OS=Guinea pig cytomegalovirus (strain 22122) PE=3
SV=2
Length = 1117
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 87/368 (23%), Positives = 147/368 (39%), Gaps = 71/368 (19%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI-------- 405
+E EL F + + PDIL GY I YLL+R + E +++
Sbjct: 378 SEYELLLGFFIFFKAYPPDILTGYNINLFDIKYLLQRMEKIYHANVSEFTKLRFGGRFSI 437
Query: 406 ---TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPL 462
+ RN+S +K + G +V++++ + + + +Y E + L+E
Sbjct: 438 YVPVGTKPRNASSASIK---VHCTGTVVLDMYPVCVAKTSAPNYKLETMAEMYLNEHKDD 494
Query: 463 HSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-RLIEQLDFIGRTSEMARLFGIQFYEV 521
S+K + + + V Y I+ ++ RL E+L++ + +ARL I V
Sbjct: 495 LSYKEIPPTFLANDN--GRAVVGRYCIKDALLVKRLFEKLNYHYEAASVARLARIPLRSV 552
Query: 522 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPL----------------- 564
+ G Q R+ S +L + N + S +R A ES P+
Sbjct: 553 IFEGQQIRIYSCILEEAGERNMILPSFLTAKRPGELATESSPVASFEEDSEQTSDSSLGE 612
Query: 565 -----------------ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTC--LGRVE 605
+LEP+ Y P+ V DF SLYPS+I+ +N C+ST LGR +
Sbjct: 613 VSSQGSSDGGVGYQGATVLEPDVGFYDTPVAVFDFASLYPSIIMRHNLCYSTYLPLGRDD 672
Query: 606 HLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRL 665
L D F ++ + R FV + +R IL ++L L R
Sbjct: 673 GLSDDDVF---LLEFDDGTR---------------YGFVREHVRKSILGELLARWLAKRK 714
Query: 666 MVKQSMKE 673
V++ + E
Sbjct: 715 SVRKVLAE 722
Score = 42.4 bits (98), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/44 (47%), Positives = 27/44 (61%), Gaps = 2/44 (4%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTC--LGRVEHLGVSDSF 151
Y P+ V DF SLYPS+I+ +N C+ST LGR + L D F
Sbjct: 637 FYDTPVAVFDFASLYPSIIMRHNLCYSTYLPLGRDDGLSDDDVF 680
>sp|P52342|DPOL_HHV7J DNA polymerase OS=Human herpesvirus 7 (strain JI) GN=U38 PE=3 SV=1
Length = 1012
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 79/333 (23%), Positives = 149/333 (44%), Gaps = 36/333 (10%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYL---LERGYVLGLNLNQELSR----- 404
++E EL F ++ P+IL GY I YL +E+ Y + +L R
Sbjct: 337 ASEFELLYAFFLFLKCKSPEILTGYNIINFDLKYLCTRMEKIYNFEIGGFSKLKRGKFSV 396
Query: 405 ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 464
I E+ + + T++ M G + +++ + +++ Q+Y + I L++ S
Sbjct: 397 IVPYEQHKKFLNSL--TKVNMSGILCFDMYNVYSSKISAQNYKLDTIAKLCLNQEKENLS 454
Query: 465 WKLLTCWWEHRTHLYKWMTVEHYLIRVTG-IIRLIEQLDFIGRTSEMARLFGIQFYEVLS 523
+K + + + V Y I+ + +++L ++++ +E+A L I +
Sbjct: 455 YKEIPKKFIDGSK--GRAVVGRYCIQDSLLVVQLFTKINYHYEMAEVASLAYITIRCAVF 512
Query: 524 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESL----PLILEPESRLYTDPIIV 579
G Q ++ +L ++ N + PS+ + + E++ +LEP+ Y P +V
Sbjct: 513 EGQQKKIFPCILHEAK--NLNMILPSMNTNFN-KGKENVGYKGATVLEPKIGYYATPTVV 569
Query: 580 LDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPS 639
DFQSLYPS+++A+N C+ST + +D N I + + P
Sbjct: 570 FDFQSLYPSIMMAHNLCYSTLV----------------VDENAVIGLHADDILTVHVGPV 613
Query: 640 GVAFVDKSIRCGILPKMLQEILDTRLMVKQSMK 672
FV K++R IL +L++ LD R VK MK
Sbjct: 614 THRFVKKTVRESILASLLKKWLDKRKEVKMQMK 646
Score = 43.1 bits (100), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 22/27 (81%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFST 137
Y P +V DFQSLYPS+++A+N C+ST
Sbjct: 563 YATPTVVFDFQSLYPSIMMAHNLCYST 589
>sp|P0CL76|DPOL_PYRAY DNA polymerase 1 OS=Pyrococcus abyssi GN=polI PE=1 SV=1
Length = 771
Score = 77.0 bits (188), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 150/329 (45%), Gaps = 45/329 (13%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS+E+E+ ++ +R+ DPD++I Y + + YLL+R LG+ L L R K
Sbjct: 184 VSSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGIKLP--LGRDNSEPKM 241
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL---HERIPLHSWKLL 468
D + +++ GRI +L+ ++R +NL +YT E + + E++ H +
Sbjct: 242 QRMGD---SLAVEIKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKSKEKVYAHE---I 295
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQF 528
WE L + V Y + + + + +F +++ARL G ++V +
Sbjct: 296 AEAWETGKGLER---VAKYSMEDAKVTFELGK-EFFPMEAQLARLVGQPVWDVSRSSTGN 351
Query: 529 RVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP--LILEPESRLYTDPIIVLDFQSLY 586
VE +LR + N +A + ++ R ES + EPE L+ + I+ LDF+SLY
Sbjct: 352 LVEWFLLRKAYERNELAPNKPDEREYERRLRESYEGGYVKEPEKGLW-EGIVSLDFRSLY 410
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDK 646
PS+II +N T L R C + +V+ + + ++
Sbjct: 411 PSIIITHNVSPDT-LNRE-----------NCKEYDVAPQVGHRFCKDFP----------- 447
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMKEYK 675
G +P +L +L+ R +K+ MKE K
Sbjct: 448 ----GFIPSLLGNLLEERQKIKKRMKESK 472
>sp|P0CL77|DPOL_PYRAB DNA polymerase 1 OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=polI
PE=1 SV=1
Length = 771
Score = 76.6 bits (187), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 84/329 (25%), Positives = 150/329 (45%), Gaps = 45/329 (13%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
VS+E+E+ ++ +R+ DPD++I Y + + YLL+R LG+ L L R K
Sbjct: 184 VSSEREMIKRLVKVIREKDPDVIITYNGDNFDFPYLLKRAEKLGIKLP--LGRDNSEPKM 241
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL---HERIPLHSWKLL 468
D + +++ GRI +L+ ++R +NL +YT E + + E++ H +
Sbjct: 242 QRMGD---SLAVEIKGRIHFDLFPVIRRTINLPTYTLEAVYEAIFGKSKEKVYAHE---I 295
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQF 528
WE L + V Y + + + + +F +++ARL G ++V +
Sbjct: 296 AEAWETGKGLER---VAKYSMEDAKVTFELGK-EFFPMEAQLARLVGQPVWDVSRSSTGN 351
Query: 529 RVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP--LILEPESRLYTDPIIVLDFQSLY 586
VE +LR + N +A + ++ R ES + EPE L+ + I+ LDF+SLY
Sbjct: 352 LVEWFLLRKAYERNELAPNKPDEREYERRLRESYEGGYVKEPEKGLW-EGIVSLDFRSLY 410
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDK 646
PS+II +N T L R C + +V+ + + ++
Sbjct: 411 PSIIITHNVSPDT-LNRE-----------NCKEYDVAPQVGHRFCKDFP----------- 447
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMKEYK 675
G +P +L +L+ R +K+ MKE K
Sbjct: 448 ----GFIPSLLGNLLEERQKIKKRMKESK 472
>sp|P04292|DPOL_HHV1K DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
KOS) GN=UL30 PE=1 SV=1
Length = 1235
Score = 73.9 bits (180), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 82/392 (20%), Positives = 159/392 (40%), Gaps = 97/392 (24%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER----------GYVLGLNLNQELS 403
+E E+ F+ V+Q+ P+ + GY I W +LL + GY G + +
Sbjct: 442 SEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGY--GRMNGRGVF 499
Query: 404 RITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLH 463
R+ ++ + + K +++++ G + I+++ ++ ++ L SY + VL ++
Sbjct: 500 RVWDIGQSHFQ----KRSKIKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDL 555
Query: 464 SWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-----RLIEQLDFIGRTSEMARLFGIQF 518
S++ + ++ T + + Y I+ + ++ + + L+ S +ARL GI
Sbjct: 556 SYRDIPAYYA--TGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLEL----SAVARLAGINI 609
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR---AHMRAPESLPL----------- 564
+ G Q RV + +LRL+ F+ P + R A AP+
Sbjct: 610 TRTIYDGQQIRVFTCLLRLADQKGFIL--PDTQGRFRGAGGEAPKRPAAAREDEERPEEE 667
Query: 565 ---------------------------------ILEPESRLYTDPIIVLDFQSLYPSVII 591
+L+P S + +P++V DF SLYPS+I
Sbjct: 668 GEDEDEREEGGGEREPEGARETAGRHVGYQGAKVLDPTSGFHVNPVVVFDFASLYPSIIQ 727
Query: 592 AYNYCFSTCLGR---VEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSI 648
A+N CFST R V HL + +++ V R L FV +
Sbjct: 728 AHNLCFSTLSLRADAVAHLEAGKDY----LEIEVGGRRL--------------FFVKAHV 769
Query: 649 RCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
R +L +L++ L R ++ + + E++
Sbjct: 770 RESLLSILLRDWLAMRKQIRSRIPQSSPEEAV 801
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
+ +P++V DF SLYPS+I A+N CFST
Sbjct: 708 FHVNPVVVFDFASLYPSIIQAHNLCFST 735
>sp|O89042|DPOLA_RAT DNA polymerase alpha catalytic subunit (Fragment) OS=Rattus
norvegicus GN=Pola1 PE=2 SV=1
Length = 1451
Score = 73.2 bits (178), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 77/358 (21%), Positives = 150/358 (41%), Gaps = 50/358 (13%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
+E + E+ L F+ V + DPDIL+G+ I LL+R + ++ R+
Sbjct: 614 MEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPFWSKIGRLR 673
Query: 407 EVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSW 465
+ GR++ ++ ++ ++ +SY ++ +L ERI + +
Sbjct: 674 RSNMPKLGSRSGFGERNATCGRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPTE 733
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRG 525
+ + E LY +EH I++++ +L+ + ++ + G L G
Sbjct: 734 NIRNMYSEPSHLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGG 790
Query: 526 SQFRVESIMLRLSRLNNFVAVSPSI---------------------KQRAHMRAPESLPL 564
R E ++L NN++ I ++ +A + L
Sbjct: 791 RSERNEFLLLHAFYENNYIVPDKQIFRKPQQKPGDEDEEIDGDTNKYKKGRKKAAYAGGL 850
Query: 565 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRV--EHLGVSDSFPFGCIDLNV 622
+L+P+ Y I++LDF SLYPS+I +N CF+T + RV E L ++
Sbjct: 851 VLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT-VQRVASETLKATED---------- 899
Query: 623 SIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
+ Q+ + P D ++ GILP+ ++++++ R VKQ MK+ + L
Sbjct: 900 ------EEQEQIPELP------DPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDL 945
Score = 36.6 bits (83), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
Y I++LDF SLYPS+I +N CF+T
Sbjct: 858 FYDKFILLLDFNSLYPSIIQEFNICFTT 885
>sp|P09854|DPOL_HHV1S DNA polymerase catalytic subunit OS=Human herpesvirus 1 (strain
SC16) GN=UL30 PE=3 SV=1
Length = 1235
Score = 73.2 bits (178), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 80/390 (20%), Positives = 156/390 (40%), Gaps = 93/390 (23%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER----------GYVLGLNLNQELS 403
+E E+ F+ V+Q+ P+ + GY I W +LL + GY G + +
Sbjct: 442 SEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGY--GRMNGRGVF 499
Query: 404 RITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLH 463
R+ ++ + + K +++++ G + I+++ ++ ++ L SY + VL ++
Sbjct: 500 RVWDIGQSHFQ----KRSKIKVNGMVSIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDL 555
Query: 464 SWKLLTCWWEH---RTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 520
S++ + ++ + + ++ L+ + + L+ S +ARL GI
Sbjct: 556 SYRDIPAYYAAGPAQRGVIGEYCIQDSLLVGQLFFKFLPHLEL----SAVARLAGINITR 611
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR---AHMRAPESLPL------------- 564
+ G Q RV + +LRL+ F+ P + R A AP+
Sbjct: 612 TIYDGQQIRVFTCLLRLADQKGFIL--PDTQGRFRGAGGEAPKRPAAAREDEERPEEEGE 669
Query: 565 -------------------------------ILEPESRLYTDPIIVLDFQSLYPSVIIAY 593
+L+P S + +P++V DF SLYPS+I A+
Sbjct: 670 DEDEREEGGGEREPDGARETAGRHVGYQGARVLDPTSGFHVNPVVVFDFASLYPSIIQAH 729
Query: 594 NYCFSTCLGR---VEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRC 650
N CFST R V HL + +++ V R L FV +R
Sbjct: 730 NLCFSTLSLRADAVAHLEAGKDY----LEIEVGGRRL--------------FFVKAHVRE 771
Query: 651 GILPKMLQEILDTRLMVKQSMKEYKFSESL 680
+L +L++ L R ++ + + E++
Sbjct: 772 SLLSILLRDWLAMRKQIRSRIPQSSPEEAV 801
Score = 42.7 bits (99), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 16/28 (57%), Positives = 22/28 (78%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFST 137
+ +P++V DF SLYPS+I A+N CFST
Sbjct: 708 FHVNPVVVFDFASLYPSIIQAHNLCFST 735
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.138 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 254,340,460
Number of Sequences: 539616
Number of extensions: 10761015
Number of successful extensions: 25039
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 26
Number of HSP's that attempted gapping in prelim test: 24442
Number of HSP's gapped (non-prelim): 439
length of query: 696
length of database: 191,569,459
effective HSP length: 125
effective length of query: 571
effective length of database: 124,117,459
effective search space: 70871069089
effective search space used: 70871069089
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 65 (29.6 bits)