Query psy5925
Match_columns 696
No_of_seqs 521 out of 2126
Neff 7.0
Searched_HMMs 29240
Date Fri Aug 16 21:58:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5925.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5925hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iay_A DNA polymerase delta ca 100.0 1.2E-73 4.3E-78 681.3 39.6 435 190-692 185-644 (919)
2 2gv9_A DNA polymerase; polymer 100.0 2.8E-63 9.5E-68 602.8 37.7 416 222-692 295-778 (1193)
3 3qex_A DNA polymerase, GP43; d 100.0 2.3E-62 7.7E-67 577.3 27.4 376 242-674 105-492 (903)
4 1qht_A Protein (DNA polymerase 100.0 6.3E-61 2.2E-65 566.4 37.6 354 242-692 132-496 (775)
5 3k59_A POL II, DNA polymerase 100.0 2.4E-59 8.1E-64 549.3 33.2 306 346-692 195-505 (786)
6 1s5j_A DNA polymerase I; repli 100.0 2.1E-54 7.3E-59 514.2 30.5 359 242-692 187-577 (847)
7 1noy_A Protein (DNA polymerase 100.0 3.1E-38 1.1E-42 346.0 23.2 271 242-550 103-382 (388)
8 3iay_A DNA polymerase delta ca 99.7 1.3E-19 4.5E-24 216.5 1.4 137 67-227 492-645 (919)
9 2gv9_A DNA polymerase; polymer 99.7 1.6E-18 5.3E-23 211.3 1.0 151 55-229 568-781 (1193)
10 2py5_A DNA polymerase; protein 99.7 9.6E-17 3.3E-21 183.5 15.3 209 359-599 44-269 (575)
11 1qht_A Protein (DNA polymerase 99.5 1.1E-15 3.7E-20 180.7 2.3 132 67-228 351-498 (775)
12 3qex_A DNA polymerase, GP43; d 99.5 4.3E-15 1.5E-19 175.8 7.0 74 65-143 362-435 (903)
13 3k59_A POL II, DNA polymerase 99.4 4.5E-14 1.6E-18 166.0 5.4 102 69-198 376-477 (786)
14 1s5j_A DNA polymerase I; repli 99.4 2.5E-14 8.7E-19 170.3 2.8 138 64-227 415-578 (847)
15 1y97_A Three prime repair exon 98.1 3.6E-05 1.2E-09 77.8 15.1 118 357-523 98-226 (238)
16 3mxm_B Three prime repair exon 98.0 3.3E-05 1.1E-09 78.6 11.6 118 356-521 102-229 (242)
17 2p1j_A POLIII, DNA polymerase 98.0 6.4E-05 2.2E-09 73.2 13.0 163 243-501 10-172 (186)
18 3u3y_B Three prime repair exon 97.9 0.00011 3.8E-09 77.4 14.2 118 356-521 102-229 (314)
19 1zbh_A 3'-5' exonuclease ERI1; 97.6 0.001 3.5E-08 69.7 15.5 176 244-501 77-259 (299)
20 3v9w_A Ribonuclease T; DEDD nu 97.5 0.0012 4.1E-08 66.4 14.4 102 353-501 110-217 (235)
21 1w0h_A 3'-5' exonuclease ERI1; 97.5 0.002 6.8E-08 63.1 15.2 174 244-501 9-191 (204)
22 2f96_A Ribonuclease T; RNAse, 97.5 0.0023 7.8E-08 63.9 15.5 103 352-501 101-209 (224)
23 2gui_A DNA polymerase III epsi 97.4 0.0032 1.1E-07 61.2 15.5 102 353-501 80-181 (194)
24 1zbu_A ERI-1 homolog, 3'-5' ex 97.2 0.0017 5.9E-08 69.5 11.4 176 244-501 127-309 (349)
25 2qxf_A Exodeoxyribonuclease I; 96.8 0.022 7.4E-07 63.5 16.2 104 354-501 80-197 (482)
26 2xri_A ERI1 exoribonuclease 3; 96.3 0.047 1.6E-06 54.3 13.7 101 352-501 101-210 (224)
27 3cg7_A CRN-4, cell death-relat 94.6 0.18 6.2E-06 52.7 11.4 101 352-501 92-205 (308)
28 1wlj_A Interferon stimulated g 93.4 0.28 9.5E-06 47.2 9.3 93 353-501 68-165 (189)
29 2igi_A Oligoribonuclease; RNAs 90.7 0.18 6.1E-06 48.0 4.2 42 352-394 78-122 (180)
30 2kfn_A Klenow fragment of DNA 90.6 6.3 0.00022 44.9 17.7 106 356-501 76-189 (605)
31 3tr8_A Oligoribonuclease; tran 90.0 0.33 1.1E-05 47.0 5.3 42 353-395 83-127 (186)
32 3nw0_A Non-structural maintena 89.8 0.11 3.6E-06 52.5 1.7 39 7-52 181-226 (238)
33 2xb1_A Pygopus homolog 2, B-ce 89.0 0.25 8.6E-06 43.3 3.3 71 4-78 1-87 (105)
34 1wil_A KIAA1045 protein; ring 88.8 0.078 2.7E-06 44.0 -0.1 29 8-42 17-45 (89)
35 2ct0_A Non-SMC element 1 homol 88.4 0.18 6.2E-06 41.3 1.9 38 7-51 16-60 (74)
36 2py5_A DNA polymerase; protein 88.3 0.11 3.8E-06 59.1 0.8 43 94-138 224-270 (575)
37 2puy_A PHD finger protein 21A; 88.1 0.3 1E-05 38.1 2.9 43 6-56 5-56 (60)
38 2k16_A Transcription initiatio 87.0 0.33 1.1E-05 39.6 2.7 46 6-56 18-72 (75)
39 2ku3_A Bromodomain-containing 86.7 0.39 1.3E-05 38.9 2.9 47 6-55 16-69 (71)
40 1xwh_A Autoimmune regulator; P 86.4 0.45 1.5E-05 37.9 3.1 43 6-56 8-59 (66)
41 1x9m_A DNA polymerase; DNA plo 86.4 3.2 0.00011 48.2 11.6 114 358-501 42-179 (698)
42 1wev_A Riken cDNA 1110020M19; 86.3 0.56 1.9E-05 39.6 3.8 47 7-56 17-76 (88)
43 1f62_A Transcription factor WS 85.8 0.38 1.3E-05 36.1 2.2 39 8-51 2-49 (51)
44 2gbz_A Oligoribonuclease; ORN, 85.1 0.34 1.2E-05 46.8 2.2 42 352-394 82-126 (194)
45 2yql_A PHD finger protein 21A; 85.0 0.62 2.1E-05 35.7 3.2 40 4-51 7-55 (56)
46 2yt5_A Metal-response element- 83.4 1 3.6E-05 35.5 4.0 49 5-56 5-65 (66)
47 2e6s_A E3 ubiquitin-protein li 82.7 0.97 3.3E-05 37.2 3.6 39 8-51 28-76 (77)
48 2l5u_A Chromodomain-helicase-D 82.6 0.8 2.7E-05 35.8 2.9 40 5-52 10-58 (61)
49 2l43_A N-teminal domain from h 81.7 0.41 1.4E-05 40.5 1.0 49 6-57 25-80 (88)
50 2e6r_A Jumonji/ARID domain-con 81.3 0.67 2.3E-05 39.5 2.2 42 7-53 17-67 (92)
51 1vk0_A Hypothetical protein; h 81.0 3.9 0.00013 39.9 8.0 100 362-501 100-203 (206)
52 3o36_A Transcription intermedi 80.2 0.87 3E-05 43.7 2.9 40 7-54 5-53 (184)
53 2lri_C Autoimmune regulator; Z 79.9 0.95 3.2E-05 36.1 2.5 38 6-51 12-58 (66)
54 1mm2_A MI2-beta; PHD, zinc fin 79.7 1 3.5E-05 35.2 2.6 39 6-52 9-56 (61)
55 1fp0_A KAP-1 corepressor; PHD 79.5 1.4 4.7E-05 37.3 3.5 41 5-53 24-73 (88)
56 3lqh_A Histone-lysine N-methyl 78.9 1.3 4.4E-05 42.6 3.6 45 5-54 1-65 (183)
57 2kwj_A Zinc finger protein DPF 78.7 1.3 4.6E-05 39.1 3.4 44 8-56 60-112 (114)
58 3asl_A E3 ubiquitin-protein li 78.0 1.4 4.8E-05 35.5 3.0 39 8-51 20-68 (70)
59 3shb_A E3 ubiquitin-protein li 77.9 1.4 4.7E-05 36.3 3.0 39 8-51 28-76 (77)
60 2lv9_A Histone-lysine N-methyl 77.4 1.5 5.1E-05 37.7 3.2 30 23-52 39-76 (98)
61 1x4j_A Ring finger protein 38; 76.7 1.2 4.2E-05 35.7 2.4 42 5-51 22-68 (75)
62 3u5n_A E3 ubiquitin-protein li 75.9 1.2 4E-05 43.7 2.4 41 6-54 7-56 (207)
63 2kiz_A E3 ubiquitin-protein li 75.0 1.4 4.7E-05 34.6 2.2 42 5-51 13-59 (69)
64 2ect_A Ring finger protein 126 74.4 2.5 8.4E-05 34.0 3.6 45 4-53 13-62 (78)
65 1iym_A EL5; ring-H2 finger, ub 74.0 2.2 7.7E-05 31.7 3.1 42 5-51 4-51 (55)
66 1we9_A PHD finger family prote 72.4 3.1 0.0001 32.5 3.6 47 5-55 5-61 (64)
67 2ecm_A Ring finger and CHY zin 71.1 2.8 9.4E-05 31.1 3.0 43 5-51 4-51 (55)
68 2xeu_A Ring finger protein 4; 70.2 0.87 3E-05 35.0 -0.1 48 4-52 1-53 (64)
69 2ro1_A Transcription intermedi 68.4 2.2 7.7E-05 41.1 2.4 38 8-53 4-50 (189)
70 1wen_A Inhibitor of growth fam 66.9 3.6 0.00012 33.1 3.0 43 7-56 17-69 (71)
71 2ep4_A Ring finger protein 24; 66.7 2.7 9.1E-05 33.4 2.2 41 5-51 14-60 (74)
72 3o70_A PHD finger protein 13; 66.3 4 0.00014 32.6 3.1 40 6-51 19-66 (68)
73 3ng2_A RNF4, snurf, ring finge 65.9 1.9 6.4E-05 33.9 1.1 47 5-52 9-60 (71)
74 1wem_A Death associated transc 64.9 3.7 0.00013 33.3 2.7 43 6-54 16-72 (76)
75 1wee_A PHD finger family prote 64.6 5 0.00017 32.2 3.4 41 7-52 17-66 (72)
76 1faq_A RAF-1; transferase, ser 63.9 4.4 0.00015 30.1 2.7 31 6-43 14-44 (52)
77 2l0b_A E3 ubiquitin-protein li 63.1 2.9 9.8E-05 35.0 1.7 42 5-51 39-85 (91)
78 1weu_A Inhibitor of growth fam 62.3 3.4 0.00012 35.1 2.0 43 7-56 37-89 (91)
79 2y43_A E3 ubiquitin-protein li 62.2 4.8 0.00017 34.0 3.1 43 6-55 22-69 (99)
80 2ysm_A Myeloid/lymphoid or mix 62.1 5 0.00017 35.0 3.2 41 8-53 56-105 (111)
81 2vpb_A Hpygo1, pygopus homolog 61.7 3.2 0.00011 32.8 1.7 33 6-42 8-41 (65)
82 1chc_A Equine herpes virus-1 r 61.6 4.7 0.00016 31.3 2.7 41 5-52 4-49 (68)
83 3lrq_A E3 ubiquitin-protein li 61.3 3.2 0.00011 35.4 1.8 42 6-54 22-69 (100)
84 2jmi_A Protein YNG1, ING1 homo 60.0 6 0.00021 33.4 3.2 43 7-56 27-80 (90)
85 1t1h_A Gspef-atpub14, armadill 60.0 4 0.00014 32.7 2.1 43 5-55 7-55 (78)
86 2eli_A Protein kinase C alpha 59.1 7.3 0.00025 32.4 3.5 37 5-44 27-63 (85)
87 2yuu_A NPKC-delta, protein kin 58.3 6.4 0.00022 32.5 3.0 36 5-43 27-62 (83)
88 1kbe_A Kinase suppressor of RA 58.2 4.5 0.00015 30.2 1.8 29 8-43 16-44 (49)
89 2ckl_B Ubiquitin ligase protei 58.0 3.5 0.00012 38.5 1.5 41 6-53 54-100 (165)
90 2ri7_A Nucleosome-remodeling f 57.7 3.5 0.00012 39.0 1.5 45 5-54 7-61 (174)
91 3o7a_A PHD finger protein 13 v 56.9 8 0.00027 28.9 3.1 31 21-51 13-51 (52)
92 2enn_A NPKC-theta, protein kin 56.9 9.4 0.00032 31.0 3.8 36 6-44 34-69 (77)
93 2ea6_A Ring finger protein 4; 55.4 4 0.00014 31.6 1.3 47 5-52 14-65 (69)
94 1wew_A DNA-binding family prot 55.3 6.3 0.00021 32.2 2.5 43 6-54 16-74 (78)
95 1pft_A TFIIB, PFTFIIBN; N-term 55.2 9.6 0.00033 28.1 3.3 34 5-39 4-37 (50)
96 1wep_A PHF8; structural genomi 54.5 9.2 0.00031 31.2 3.3 44 6-54 12-65 (79)
97 2enz_A NPKC-theta, protein kin 53.6 8.9 0.00031 30.0 3.0 35 6-43 23-57 (65)
98 2ecl_A Ring-box protein 2; RNF 52.9 4.6 0.00016 33.0 1.3 27 26-52 42-73 (81)
99 2ysm_A Myeloid/lymphoid or mix 52.1 9.5 0.00033 33.1 3.3 33 5-42 6-38 (111)
100 2djb_A Polycomb group ring fin 52.0 6.9 0.00023 30.9 2.2 45 5-56 14-63 (72)
101 1jm7_A BRCA1, breast cancer ty 50.5 9.4 0.00032 32.7 3.0 59 6-73 21-87 (112)
102 4a0k_B E3 ubiquitin-protein li 49.7 3.5 0.00012 36.7 0.0 22 30-51 82-108 (117)
103 3saf_A Exosome component 10; e 49.6 23 0.00078 38.5 6.5 93 370-501 180-273 (428)
104 3dpl_R Ring-box protein 1; ubi 49.2 2 6.9E-05 37.4 -1.6 26 27-52 68-98 (106)
105 2db6_A SH3 and cysteine rich d 48.6 6 0.0002 32.0 1.3 36 6-44 28-63 (74)
106 3pv8_A DNA polymerase I; DNA p 48.2 53 0.0018 37.2 9.5 105 360-501 71-177 (592)
107 3uej_A NPKC-delta, protein kin 48.2 8 0.00027 30.2 1.9 36 5-43 19-54 (65)
108 1y8f_A UNC-13 homolog A, MUNC1 47.3 8.8 0.0003 30.2 2.0 36 5-43 23-58 (66)
109 3v43_A Histone acetyltransfera 47.2 13 0.00044 32.5 3.3 40 8-51 63-111 (112)
110 2d8t_A Dactylidin, ring finger 46.9 7.9 0.00027 30.4 1.7 41 5-53 14-59 (71)
111 1e4u_A Transcriptional repress 46.9 7.9 0.00027 31.6 1.8 45 5-55 10-62 (78)
112 4b6d_A RAC GTPase-activating p 46.8 15 0.00051 28.6 3.3 38 6-47 19-58 (61)
113 2gmg_A Hypothetical protein PF 46.5 7.6 0.00026 33.7 1.6 29 27-55 68-96 (105)
114 2egp_A Tripartite motif-contai 46.0 5.3 0.00018 31.9 0.5 42 5-54 11-64 (79)
115 1ptq_A Protein kinase C delta 45.3 12 0.00042 27.3 2.5 36 5-43 10-45 (50)
116 2ckl_A Polycomb group ring fin 45.1 17 0.00058 31.1 3.7 43 5-54 14-61 (108)
117 1dl6_A Transcription factor II 44.9 13 0.00043 28.7 2.6 31 8-39 13-43 (58)
118 2ysj_A Tripartite motif-contai 44.2 13 0.00045 28.2 2.6 37 5-49 19-63 (63)
119 1qxf_A GR2, 30S ribosomal prot 43.9 11 0.00036 29.9 2.0 28 8-36 9-36 (66)
120 1yt3_A Ribonuclease D, RNAse D 43.0 48 0.0016 35.0 7.7 101 361-501 65-166 (375)
121 2ecn_A Ring finger protein 141 42.9 8 0.00027 30.2 1.2 39 5-52 14-57 (70)
122 3j20_W 30S ribosomal protein S 42.5 12 0.00041 29.4 2.0 28 8-36 17-44 (63)
123 1gh9_A 8.3 kDa protein (gene M 42.0 13 0.00045 29.9 2.3 9 26-35 4-12 (71)
124 2e6m_A Werner syndrome ATP-dep 41.8 34 0.0012 32.6 5.8 96 370-501 94-191 (208)
125 4ayc_A E3 ubiquitin-protein li 41.8 10 0.00034 34.2 1.8 37 7-51 54-95 (138)
126 2fnf_X Putative RAS effector N 41.6 16 0.00055 29.3 2.8 32 6-43 35-66 (72)
127 2csy_A Zinc finger protein 183 41.0 14 0.00048 29.7 2.4 41 5-53 14-59 (81)
128 1rfh_A RAS association (ralgds 40.7 14 0.00049 28.3 2.3 31 7-43 23-53 (59)
129 2lcq_A Putative toxin VAPC6; P 40.4 10 0.00035 35.4 1.7 26 26-52 132-157 (165)
130 2ecv_A Tripartite motif-contai 40.3 10 0.00035 30.4 1.5 43 5-55 18-71 (85)
131 2yur_A Retinoblastoma-binding 39.6 17 0.00056 28.8 2.6 41 5-52 14-61 (74)
132 1weo_A Cellulose synthase, cat 39.4 13 0.00044 31.2 1.9 52 4-56 14-71 (93)
133 2ecy_A TNF receptor-associated 39.3 8.2 0.00028 29.8 0.7 42 5-54 14-61 (66)
134 2ecw_A Tripartite motif-contai 39.1 8.3 0.00028 31.0 0.7 42 5-54 18-70 (85)
135 3u5c_b RP61, YS20, 40S ribosom 38.7 14 0.00048 30.5 2.0 28 8-36 36-63 (82)
136 2hbj_A Exosome complex exonucl 38.4 48 0.0016 35.6 6.9 93 370-501 157-250 (410)
137 3hct_A TNF receptor-associated 38.0 25 0.00085 30.5 3.8 40 5-52 17-62 (118)
138 1noy_A Protein (DNA polymerase 38.0 8.3 0.00028 41.3 0.7 26 64-90 358-383 (388)
139 2xzm_6 RPS27E; ribosome, trans 37.6 15 0.0005 30.3 1.9 28 8-36 34-61 (81)
140 2row_A RHO-associated protein 37.5 15 0.00053 30.5 2.1 33 7-42 36-70 (84)
141 3fl2_A E3 ubiquitin-protein li 37.1 12 0.00041 32.9 1.5 42 6-55 52-99 (124)
142 3kqi_A GRC5, PHD finger protei 36.6 18 0.00061 29.2 2.3 32 24-55 23-64 (75)
143 3ky9_A Proto-oncogene VAV; cal 36.3 18 0.00061 40.9 3.1 43 5-52 528-570 (587)
144 3k1l_B Fancl; UBC, ring, RWD, 36.3 12 0.00039 39.6 1.4 32 8-41 310-343 (381)
145 2ct2_A Tripartite motif protei 35.9 19 0.00063 29.2 2.4 44 5-53 14-66 (88)
146 4bbq_A Lysine-specific demethy 34.8 6.5 0.00022 34.5 -0.7 34 7-52 8-43 (117)
147 3irb_A Uncharacterized protein 34.6 14 0.00046 34.0 1.5 25 26-53 47-71 (145)
148 3kv5_D JMJC domain-containing 34.2 13 0.00045 41.1 1.5 41 8-54 39-90 (488)
149 4ap4_A E3 ubiquitin ligase RNF 32.8 10 0.00035 33.2 0.3 27 28-54 93-124 (133)
150 2gnr_A Conserved hypothetical 32.4 16 0.00053 33.7 1.5 26 25-53 46-71 (145)
151 4ap4_A E3 ubiquitin ligase RNF 31.5 9.6 0.00033 33.4 -0.1 50 4-54 5-59 (133)
152 3ztg_A E3 ubiquitin-protein li 31.4 23 0.00079 29.1 2.3 41 5-52 12-59 (92)
153 2kgg_A Histone demethylase jar 31.1 43 0.0015 24.8 3.5 27 24-50 16-52 (52)
154 4gzn_C ZFP-57, zinc finger pro 30.5 22 0.00075 27.1 1.8 10 5-14 3-12 (60)
155 1jm7_B BARD1, BRCA1-associated 30.1 32 0.0011 29.8 3.1 43 6-55 22-67 (117)
156 3iz6_X 40S ribosomal protein S 29.8 19 0.00065 29.9 1.4 29 8-37 38-66 (86)
157 2vnf_A ING 4, P29ING4, inhibit 29.7 24 0.00082 27.2 1.9 39 7-52 11-59 (60)
158 2ysl_A Tripartite motif-contai 29.6 23 0.0008 27.5 1.9 41 5-53 19-67 (73)
159 3hcs_A TNF receptor-associated 29.3 39 0.0013 31.2 3.8 38 5-50 17-60 (170)
160 2kwj_A Zinc finger protein DPF 29.3 24 0.00082 30.8 2.1 35 8-42 3-39 (114)
161 1vq8_Z 50S ribosomal protein L 29.2 29 0.00098 28.8 2.4 36 5-42 26-61 (83)
162 4gne_A Histone-lysine N-methyl 29.1 33 0.0011 29.8 2.9 38 7-52 16-62 (107)
163 1v87_A Deltex protein 2; ring- 29.1 18 0.00062 31.1 1.3 27 26-52 55-91 (114)
164 3l11_A E3 ubiquitin-protein li 29.0 22 0.00075 30.7 1.8 40 6-53 15-60 (115)
165 1zfo_A LAsp-1; LIM domain, zin 27.6 22 0.00074 23.6 1.1 27 8-41 5-31 (31)
166 2ecj_A Tripartite motif-contai 27.3 27 0.00092 25.7 1.8 37 5-49 14-58 (58)
167 2kdx_A HYPA, hydrogenase/ureas 26.4 29 0.00099 30.5 2.1 36 24-62 71-107 (119)
168 2g6q_A Inhibitor of growth pro 25.6 31 0.0011 26.8 1.9 39 7-52 12-60 (62)
169 1z6u_A NP95-like ring finger p 25.5 26 0.0009 32.1 1.7 42 6-55 78-125 (150)
170 1twf_L ABC10-alpha, DNA-direct 25.2 45 0.0015 26.7 2.8 28 25-52 27-54 (70)
171 3c6w_A P28ING5, inhibitor of g 24.8 32 0.0011 26.4 1.9 39 7-52 10-58 (59)
172 3v43_A Histone acetyltransfera 24.4 29 0.00099 30.2 1.7 36 7-42 6-42 (112)
173 3cym_A Uncharacterized protein 23.8 1.3E+02 0.0044 32.6 7.1 99 360-501 85-183 (440)
174 3cxl_A N-chimerin; SH2, RHO-GA 23.8 34 0.0012 37.3 2.5 35 5-43 219-254 (463)
175 1v5n_A PDI-like hypothetical p 23.8 29 0.00098 29.0 1.5 35 2-42 43-77 (89)
176 2d8s_A Cellular modulator of i 23.8 52 0.0018 26.7 3.0 43 5-52 14-67 (80)
177 3mv2_A Coatomer subunit alpha; 23.3 57 0.0019 34.0 3.9 40 11-53 273-313 (325)
178 2lq6_A Bromodomain-containing 22.9 35 0.0012 28.4 1.9 32 6-43 17-50 (87)
179 3pur_A Lysine-specific demethy 22.3 44 0.0015 37.1 3.0 39 16-54 48-96 (528)
180 3a1b_A DNA (cytosine-5)-methyl 22.0 16 0.00056 34.1 -0.4 38 5-42 35-72 (159)
181 1g25_A CDK-activating kinase a 21.8 21 0.00072 27.2 0.2 47 6-55 3-55 (65)
182 2y1n_A E3 ubiquitin-protein li 21.6 31 0.0011 36.9 1.6 42 6-55 332-379 (389)
183 1x4i_A Inhibitor of growth pro 21.5 26 0.00089 27.9 0.7 43 7-56 7-59 (70)
184 1lpv_A Doublesex protein; tran 21.5 23 0.00078 26.7 0.3 43 7-62 8-52 (52)
185 3a43_A HYPD, hydrogenase nicke 20.5 47 0.0016 30.1 2.3 37 24-62 68-124 (139)
No 1
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-73 Score=681.31 Aligned_cols=435 Identities=23% Similarity=0.318 Sum_probs=341.7
Q ss_pred chhhHHHHH-HHhcCCc-ccccc--ccccccCCCCCCccccccCCCCcccccc--c---ccCCCceEEEEEEEeecCCCC
Q psy5925 190 NPDLFKSFI-RKQLETP-KRRIC--DSYAIDAMTPDTTGDYQMGLDNLNEVTS--H---VENYYLTVLAVEIHAISRALL 260 (696)
Q Consensus 190 ~~~l~~~~l-~r~~~~p-~~~~~--~~~~I~~~t~~~~~gfk~~~~~~~~~~~--~---~~~~~LtilsleIe~~sr~~~ 260 (696)
+-....+|+ .+.+++| +.++. ...........+||.+++.+..++.+.. . ...|++++|||||||.++++.
T Consensus 185 dI~~~~RfliD~~I~g~~W~~i~~~~~~~~~~~~~~S~c~~Ev~v~~~~l~~~~~~~~~~~~PplrilSfDIEt~~~~g~ 264 (919)
T 3iay_A 185 NIAYTLRLMVDCGIVGMSWITLPKGKYSMIEPNNRVSSCQLEVSINYRNLIAHPAEGDWSHTAPLRIMSFDIECAGRIGV 264 (919)
T ss_dssp CCCHHHHHHHHHTCCTTCEEEECTTSEEECCGGGCCBCCSEEEEEETTTCEEECSSGGGSCCCCCEEEEEEEEECCCTTS
T ss_pred CCChHhhheeecCCccceEEEEecCcceeccccCCccceeEEEEeeccccccccccccccCCCCceEEEEEEEECCCCCC
Confidence 444566777 7788888 55543 2211111133578988876654433321 1 236999999999999999989
Q ss_pred CCCCCCCcEEEEEEEeecCCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhhhhhhhccccCCCcccccccccc
Q psy5925 261 KPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIET 340 (696)
Q Consensus 261 ~Pdp~~D~I~~I~~~~~~~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~~~~~~~p~~~~g~ei~~ 340 (696)
||+|++|+|++|++.++.++........++. +..+++.
T Consensus 265 fP~~~~D~Ii~IS~~v~~~g~~~~~~r~~f~---------------------------------l~~~~~~--------- 302 (919)
T 3iay_A 265 FPEPEYDPVIQIANVVSIAGAKKPFIRNVFT---------------------------------LNTCSPI--------- 302 (919)
T ss_dssp CCCTTTCCEEEEEEEEEETTCSSCSEEEEEE---------------------------------ESCCCCB---------
T ss_pred CCCCCCCcEEEEEEEEecCCCcccceeEEEE---------------------------------ecCCCCC---------
Confidence 9999999999999988765431111111111 1112210
Q ss_pred cccCcceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccc-cc---cC--
Q psy5925 341 FSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-RN---SS-- 414 (696)
Q Consensus 341 ~~~~~~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~-~~---~~-- 414 (696)
.+..|..|++|++||.+|+++|+++|||||+|||+++||||||.+||+.+|++.|..+||.+.... .+ ++
T Consensus 303 ----~~~~V~~~~sE~eLL~~F~~~i~~~DPDIIvGyNi~~FDlpyL~~Ra~~lgi~~~~~lGR~~~~~~~~~~~~~~~~ 378 (919)
T 3iay_A 303 ----TGSMIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFGRLKTVKQEIKESVFSSK 378 (919)
T ss_dssp ----TTBEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCTTCSCCSSBTTCCCCBCCEEEEET
T ss_pred ----CCCeEEECCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHcCCCchhhhccccCccccccccccccc
Confidence 246899999999999999999999999999999999999999999999999999888999864321 10 11
Q ss_pred -CCccccceeeecccEEEehHHHHhhhcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHH
Q psy5925 415 -RDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTG 493 (696)
Q Consensus 415 -~~~~~~~~~~i~GRl~lDl~~~~r~~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l 493 (696)
.+.+....+.+.||+++|+|+++++++++.||+|++||+++||++|+++++++|.+||+.++ ..+.++++||++||.+
T Consensus 379 ~~g~~~~~~~~i~GR~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~I~~l~~~~~-~~~~~L~~Y~~~Da~l 457 (919)
T 3iay_A 379 AYGTRETKNVNIDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDS-ETRRRLAVYCLKDAYL 457 (919)
T ss_dssp TTEEEEECCBCCTTCEEEEHHHHHHHHCCCSCCCHHHHHHHHHCCC------CCHHHHHTSCH-HHHHHHHHHHHHHHHH
T ss_pred cccccccceeEEcCeEEEEhHHHHHhhcCCCCCCHHHHHHHhcccCCCCCCHHHHHHHHhcCh-hhHHHHHHHHHHHHHH
Confidence 11222335689999999999999999999999999999999999999999999999998653 4578999999999999
Q ss_pred HHHHHHHhcccchhhhHHHHhCCchhhhhcCcchhhhHHHhhcccccCCeeeeCCchhhhhccCCCCCCCeeeecccccc
Q psy5925 494 IIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLY 573 (696)
Q Consensus 494 ~~~L~~kl~ii~~~~ela~l~gi~~~~vl~rGs~~rvEslLlr~~~~~~~i~p~p~~~q~~~~~~~~~GglVleP~~Gly 573 (696)
+++|+.++++++++.|+|+++|++++++++||+|+++|++|+|+|+++||++|++... .....|+||+|+||++|+|
T Consensus 458 ~~~L~~kl~~l~~~~elArl~Gi~~~~vl~rG~qi~ves~Llr~a~~~~~ilP~~~~~---~~~~~y~Gg~V~eP~~G~y 534 (919)
T 3iay_A 458 PLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDTVIPNMQSQ---ASDDQYEGATVIEPIRGYY 534 (919)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHCCCHHHHHHSCHHHHHHHHHHHHHHHTTEECBCCCCC---CCSSCCCCCCBCCCCCEEE
T ss_pred HHHHHHHHhhhHHHHHHHHHcCCCHHHhhcccchHHHHHHHHHHHhhCCeeCCCcccc---cccccCCCCEEecCCCCce
Confidence 9999999999999999999999999999999999999999999999999999886532 2356799999999999999
Q ss_pred cCceeeeeccccchhhhhhccCCccCcccccccCCCCCCCCCcccccccChhHHhhcccceeeCCCCceeecCCCcccch
Q psy5925 574 TDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGIL 653 (696)
Q Consensus 574 ~~pVvvLDF~SLYPSIIiayNiC~sT~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~d~i~~~p~g~~fvk~~~r~GIL 653 (696)
++||+||||+||||||||||||||||+++... .. .+... ..+++..+|+|.+|+++++++|||
T Consensus 535 ~~pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~-~~----------~~~~~------~~~~~~~~p~g~~f~~~~~~~gil 597 (919)
T 3iay_A 535 DVPIATLDFNSLYPSIMMAHNLCYTTLCNKAT-VE----------RLNLK------IDEDYVITPNGDYFVTTKRRRGIL 597 (919)
T ss_dssp CSCEEEEEETTHHHHHHHHTTCSGGGEECHHH-HH----------HTTCC------BTTTEEECTTSCEEECTTTCCCHH
T ss_pred eccEEEEEecccchHHHHhcCcCcccccccch-hh----------hcCCC------CCcceeeCCCCcEEeccCCCCCch
Confidence 99999999999999999999999999986421 00 00000 024677899999999998999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhCCCCHHHHHH---------hhhcccccc
Q psy5925 654 PKMLQEILDTRLMVKQSMKEYKFSESLRNL---------TMLNSMLLI 692 (696)
Q Consensus 654 P~~L~~Ll~~R~~vKk~mk~~~~~~~l~~~---------l~ansmy~~ 692 (696)
|++|++|+++|+++|+.||+.++ +..+++ +.||||||.
T Consensus 598 p~~l~~ll~~R~~~K~~mk~~~d-~~~~~~ld~~Q~AlKi~~NS~YG~ 644 (919)
T 3iay_A 598 PIILDELISARKRAKKDLRDEKD-PFKRDVLNGRQLALKISANSVYGF 644 (919)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhcCC-hHHHHHHHHHHHhhcccccccccc
Confidence 99999999999999999998654 444433 567999984
No 2
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=100.00 E-value=2.8e-63 Score=602.78 Aligned_cols=416 Identities=21% Similarity=0.298 Sum_probs=301.6
Q ss_pred CccccccCCC--CcccccccccCCCceEEEEEEEeecCC---CCCCCCC--CCcEEEEEEEeecCCCCCCceEEEEEEcC
Q psy5925 222 TTGDYQMGLD--NLNEVTSHVENYYLTVLAVEIHAISRA---LLKPDPA--YDEVKAIFYYLYTCPPEEDRKVGIILIGQ 294 (696)
Q Consensus 222 ~~~gfk~~~~--~~~~~~~~~~~~~LtilsleIe~~sr~---~~~Pdp~--~D~I~~I~~~~~~~~~~~~~~~g~ilv~~ 294 (696)
+||..++... +........+.|++++|||||||.+.+ ..||+|+ .|+|++|++.++...... ....+++..
T Consensus 295 s~c~~E~~~~~~~~~~~~~~~~~P~lrvlsfDIE~~~~g~~~~~FP~a~~~~D~Ii~IS~~~~~~~~~~--~~~~~v~~l 372 (1193)
T 2gv9_A 295 TSSDVEFNCTADNLAIEGGMSDLPAYKLMCFDIECKAGGEDELAFPVAGHPEDLVIQISCLLYDLSTTA--LEHVLLFSL 372 (1193)
T ss_dssp BSCSEEEEEEGGGEEECCSCCCCCCCEEEEEEEEEECCSSCTTSCCCTTSTTSEEEEEEEEEEETTTCC--EEEEEEEEE
T ss_pred CCCceEEEEEcccceEccccCCCCCceEEEEEEEEcccCCCCCCCCCccccCCceEEEEEEEEeccCCC--cceEEEEEC
Confidence 5666665432 211112234579999999999999874 3699995 699999999887543211 112223211
Q ss_pred CCCCcccccCccccccccchhhhhhhhhhccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHhCCCEE
Q psy5925 295 ESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDIL 374 (696)
Q Consensus 295 ~~~~~~~~~~p~~~~~~~~~~e~~~~~~~~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~DPDII 374 (696)
..... | +.|+.... ... ..+..|..|++|++||.+|+++|+++|||||
T Consensus 373 ~~~~~-----~----------~~f~~~~k---~~~--------------~~~~~V~~~~sE~eLL~~F~~~I~~~DPDII 420 (1193)
T 2gv9_A 373 GSCDL-----P----------ESHLNELA---ARG--------------LPTPVVLEFDSEFEMLLAFMTLVKQYGPEFV 420 (1193)
T ss_dssp SCCCC-----C----------HHHHHHHH---HTT--------------CCCCEEEEESSHHHHHHHHHHHHHHHCCSEE
T ss_pred CCcCC-----c----------chhhhhcc---ccc--------------CCCceEEecCCHHHHHHHHHHHHHhcCCCEE
Confidence 11100 1 11111111 000 0135688999999999999999999999999
Q ss_pred EecccccccHHHHHHHH-HHcCCCCcccccccccccc---cccCC-CccccceeeecccEEEehHHHHhhhcCCCCCCHH
Q psy5925 375 IGYEIETLSWGYLLERG-YVLGLNLNQELSRITEVEK---RNSSR-DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFE 449 (696)
Q Consensus 375 vGyNi~~fDl~YL~~Ra-~~lgi~~~~~lgR~~~~~~---~~~~~-~~~~~~~~~i~GRl~lDl~~~~r~~~kl~sysL~ 449 (696)
+|||+++||||||.+|| +.+|++.. .+||++.... |..+. +......+.+.||++||+|+++++.+++.||+|+
T Consensus 421 vGyNi~~FDlpyL~~Ra~~~~gl~l~-~~GRl~r~~~~k~~~~~~~~f~~~~~~~i~GRv~lDl~~~~~~~~kl~sYsL~ 499 (1193)
T 2gv9_A 421 TGYNIINFDWPFLLAKLTDIYKVPLD-GYGRMNGRGVFRVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKIKLSSYKLN 499 (1193)
T ss_dssp EESSTTTTHHHHHHHHHHHTTCCCCT-TTSSBSSSCCEEECC----------CEEETTBEEEEHHHHHTTTCCCSCCCHH
T ss_pred EEcCCcCccHHHHHHHHHHHcCCChH-HhcccccCCcceeeccccccccccceEEEcCeEeehHHHHHHHHhccCCCCHH
Confidence 99999999999999996 56888764 4677653221 11110 0111246789999999999999999999999999
Q ss_pred HHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHhCCchhhhhcCcchhh
Q psy5925 450 NIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFR 529 (696)
Q Consensus 450 ~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl~ii~~~~ela~l~gi~~~~vl~rGs~~r 529 (696)
+||+++||++|+++++++|.+||++++ ..+.++++||++|+.++++|+.++..+-...++|+++|+++.+++++|+|++
T Consensus 500 ~Va~~~Lg~~K~dv~~~eI~~~~~~~~-~~r~~L~~Ycl~Da~lt~~L~~kl~~~lel~elarl~gi~~~~vl~~G~~ir 578 (1193)
T 2gv9_A 500 AVAEAVLKDKKKDLSYRDIPAYYATGP-AQRGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDGQQIR 578 (1193)
T ss_dssp HHHHHTSCCCCCCCCTTTHHHHHHHCH-HHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGTTSSCSTHH
T ss_pred HHHHHHhccCCCCCCHHHHHHHHHcCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHhcCccHHH
Confidence 999999999999999999999999874 2467889999999999999999983333347999999999999999999999
Q ss_pred hHHHhhcccccCCeeeeCCchhhh---------------------------------------------hccCCCCCCCe
Q psy5925 530 VESIMLRLSRLNNFVAVSPSIKQR---------------------------------------------AHMRAPESLPL 564 (696)
Q Consensus 530 vEslLlr~~~~~~~i~p~p~~~q~---------------------------------------------~~~~~~~~Ggl 564 (696)
+|++|+|+|+++||++|++..... .+.+..|.||+
T Consensus 579 ves~Ll~~a~~~~~ilP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~Gg~ 658 (1193)
T 2gv9_A 579 VFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGARETAGRHVGYQGAK 658 (1193)
T ss_dssp HHHHHHHHHHHHTEECBCCC------------------------------------------------------------
T ss_pred HHHHHHHHHHHCCEeCCCcccccccccccccccccccccccccccccccccccccccccccccchhhhccccccccCCCE
Confidence 999999999999999998743210 01223788999
Q ss_pred eeecccccccCceeeeeccccchhhhhhccCCccCcccccccCCCCCCCCCcccccccChhHHhhccc--ceeeCCCCce
Q psy5925 565 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ--NLTISPSGVA 642 (696)
Q Consensus 565 VleP~~Gly~~pVvvLDF~SLYPSIIiayNiC~sT~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~d--~i~~~p~g~~ 642 (696)
||||++|||++||++|||+||||||||||||||||+++...... .+ .++ .+ .+.+.+.+.+
T Consensus 659 VleP~~Gly~~pV~vLDF~SLYPSII~a~Nlc~sTl~~~~~~~~----------~l--~~~-----~dy~~~~~~~~~~~ 721 (1193)
T 2gv9_A 659 VLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVA----------HL--EAG-----KDYLEIEVGGRRLF 721 (1193)
T ss_dssp CCCCCCEEECSCEEEEEEETHHHHHHHHTTCCTTTEESCSTTST----------TC--CTT-----TTEEEEECSSSEEE
T ss_pred EeecCCCeeeCcEEEEeccccchHHHHHhcCCcceeccCchhhc----------cC--CCc-----cceeEecCCCCcee
Confidence 99999999999999999999999999999999999987422111 00 000 01 1222233478
Q ss_pred eecCCCcccchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH---------hhhcccccc
Q psy5925 643 FVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL---------TMLNSMLLI 692 (696)
Q Consensus 643 fvk~~~r~GILP~~L~~Ll~~R~~vKk~mk~~~~~~~l~~~---------l~ansmy~~ 692 (696)
|+++++++||||++|++|+++|+++|+.||.. ++.++.+ +.||||||.
T Consensus 722 fvk~~~~~gilp~lL~~ll~~Rk~~K~~mk~~--~~~~~~llD~~QlAlKi~aNS~YG~ 778 (1193)
T 2gv9_A 722 FVKAHVRESLLSILLRDWLAMRKQIRSRIPQS--SPEEAVLLDKQQAAIKVVCNSVYGF 778 (1193)
T ss_dssp EECTTTSCCHHHHHHHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred eccCccccchHHHHHHHHHHHHHHHHHhcccC--CHHHHHHHHHHHHHHHHhhcceecc
Confidence 99999999999999999999999999999987 3333333 467999985
No 3
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=100.00 E-value=2.3e-62 Score=577.34 Aligned_cols=376 Identities=19% Similarity=0.210 Sum_probs=287.2
Q ss_pred CCCceEEEEEEEeecCCCCCCCCC--CCcEEEEEEEeecCCCCCCceEEEEE---EcCCCCCcccccCccccccccchhh
Q psy5925 242 NYYLTVLAVEIHAISRALLKPDPA--YDEVKAIFYYLYTCPPEEDRKVGIIL---IGQESELPEVRTKPIQMNFVSNEKE 316 (696)
Q Consensus 242 ~~~LtilsleIe~~sr~~~~Pdp~--~D~I~~I~~~~~~~~~~~~~~~g~il---v~~~~~~~~~~~~p~~~~~~~~~~e 316 (696)
.+.++++++||||.+++ .||||+ .+||+||++. ++.. ..+++ +++.. +...||....
T Consensus 105 ~~~ir~~~~DIEv~~~~-~fPd~~~~~~~Ii~It~~--d~~~-----~~~~~~~l~~~~~----~~~~~~~~~~------ 166 (903)
T 3qex_A 105 HTKIRVANFDIEVTSPD-GFPEPSQAKHPIDAITHY--DSID-----DRFYVFDLLNSPY----GNVEEWSIEI------ 166 (903)
T ss_dssp GGGSCEEEEEEECCCTT-SSCCTTTCCSCCCEEEEE--ETTT-----TEEEEEEECEETT----EECCCCCHHH------
T ss_pred cccccEEEEeEEeCCCC-CCCCcccCCCCEEEEEEE--eCCC-----CEEEEEEeecccc----cccccccccc------
Confidence 57899999999997754 799998 7899999965 2221 12232 23210 1122332100
Q ss_pred hhhhhhhccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHH-cC
Q psy5925 317 LFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV-LG 395 (696)
Q Consensus 317 ~~~~~~~~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~-lg 395 (696)
... +.+.+ ....+.++. .++.|..|++|++||.+|+++|+++|||||+|||+++||||||.+||+. +|
T Consensus 167 ----~~~-~~~~~-~~~~~~~~~-----~~v~v~~f~sE~eLL~~F~~~I~~~DPDIItGyN~~~FDlPYL~~RA~~l~g 235 (903)
T 3qex_A 167 ----AAK-LQEQG-GDEVPSEII-----DKIIYMPFDNEKELLMEYLNFWQQKTPVILTGWNVESFAIPYVYNRIKNIFG 235 (903)
T ss_dssp ----HHS-CGGGT-CCCCCHHHH-----TTEEEEEESSHHHHHHHHHHHHHHTCCSEEECSSTTTTHHHHHHHHHHHHHC
T ss_pred ----ccc-ccccc-ccccccccC-----CCeEEEEcCCHHHHHHHHHHHHHHhCCCEEEecCCccCCHHHHHHHHHHHcC
Confidence 000 00000 000111111 2578999999999999999999999999999999999999999999997 69
Q ss_pred CCC---cccccccccccccccCCCccccceeeecccEEEehHHHHhhh--cCCCCCCHHHHHHHHcCCCcCCCChhhHHH
Q psy5925 396 LNL---NQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE--VNLQSYTFENIMYHVLHERIPLHSWKLLTC 470 (696)
Q Consensus 396 i~~---~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~--~kl~sysL~~Va~~~L~~~k~~~~~~~l~~ 470 (696)
++. ++.+||.+....+. ..|. ...+.++||+++|+|+++|+. .++.||+|++||+++||++|++++ .+|.+
T Consensus 236 i~~~~~ls~~gR~~~~~~~~-~~G~--~~~~~i~GRv~lDl~~~~k~~~~~~l~SYsLd~VA~~lLg~~K~d~~-~~I~~ 311 (903)
T 3qex_A 236 ESTAKRLSPHRKTRVKVIEN-MYGS--REIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYD-GPISK 311 (903)
T ss_dssp HHHHGGGSTTSCEEEEEEEE-TTEE--EEEEEETTCEECCHHHHHHHHSCCCCSCCCHHHHHHHHHCCCCCCCS-SCGGG
T ss_pred Ccccccccccccccccchhh-hcCC--ceeEEEeCeEEeeHHHHHHHhCccCcCCCCHHHHHHHHcCCCccccH-HHHHH
Confidence 753 34577765322211 0111 124889999999999999973 489999999999999999999998 88889
Q ss_pred HHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHhCCchhhhhcCcchhhh-HHHhhcccccCCeeeeCCc
Q psy5925 471 WWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV-ESIMLRLSRLNNFVAVSPS 549 (696)
Q Consensus 471 ~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl~ii~~~~ela~l~gi~~~~vl~rGs~~rv-EslLlr~~~~~~~i~p~p~ 549 (696)
||+++ +.++++||++||.++++|+.++++++++.|+|+++|++|+++++ |.++ |++|+|+|+++||++|++.
T Consensus 312 ~~~~d----~~~L~~Ycl~Da~Lt~~L~~Kl~li~~~~elArl~Gi~~~~vls---q~~v~e~LLlr~a~~~~~iiP~~~ 384 (903)
T 3qex_A 312 LRESN----HQRYISYNIIAVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVFS---PIKTWDAIIFNSLKEQNKVIPQGR 384 (903)
T ss_dssp HHHHH----HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSCGGGGGC---HHHHHHHHHHHHHHTTTEECCCCC
T ss_pred HHhcC----HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhCCCHHHhcc---hHHHHHHHHHHHHHHCCEeccCCc
Confidence 99854 68999999999999999999999999999999999999999984 5554 9999999999999998764
Q ss_pred hhhhhccCCCCCCCeeeecccccccCceeeeeccccchhhhhhccCCccCcccccccCCCCCCCCCcccccccChhHHhh
Q psy5925 550 IKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKK 629 (696)
Q Consensus 550 ~~q~~~~~~~~~GglVleP~~Gly~~pVvvLDF~SLYPSIIiayNiC~sT~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~ 629 (696)
. .....|.||+|++|++|+|+ +|++|||+||||||||+|||||||+++...... .+. ...+....
T Consensus 385 ~----~~~~~y~Gg~V~~p~~G~y~-~v~~lDf~SLYPsIi~~~ni~~~T~~~~~~~~~------~~~----~i~~~~~~ 449 (903)
T 3qex_A 385 S----HPVQPYPGAFVKEPIPNRYK-YVMSFDLTSLYPSIIRQVNISPETIAGTFKVAP------LHD----YINAVAER 449 (903)
T ss_dssp C----CCCCCCCCCCBCCCCCEECS-SEEEEEETTHHHHHHHHHTCCGGGEEEECCCCC------HHH----HHTTCSCC
T ss_pred c----cccCCCCCCEEecccCCceE-EEEEEehhhhchHHHHHhCcChhhccccccccc------hhc----ccccccCC
Confidence 2 24568999999999999997 499999999999999999999999998643210 000 00000001
Q ss_pred cccceeeCCCCceeecCCCcccchHHHHHHHHHHHHHHHHHHhhC
Q psy5925 630 LQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY 674 (696)
Q Consensus 630 ~~d~i~~~p~g~~fvk~~~r~GILP~~L~~Ll~~R~~vKk~mk~~ 674 (696)
..+++.++|+|++|++. ++||||+||++|+++|+++|+.||++
T Consensus 450 p~~~~~~~p~g~~F~k~--~~GiLP~iL~~Ll~~R~~~K~~mk~~ 492 (903)
T 3qex_A 450 PSDVYSCSPNGMMYYKD--RDGVVPTEITKVFNQRKEHKGYMLAA 492 (903)
T ss_dssp SCSSSEECTTSEEECCS--SCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCceeeCCCCceEecC--CCcchHHHHHHHHHHHHHHHHHHhhc
Confidence 13567789999999985 89999999999999999999999875
No 4
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=100.00 E-value=6.3e-61 Score=566.40 Aligned_cols=354 Identities=25% Similarity=0.326 Sum_probs=293.5
Q ss_pred CCCceEEEEEEEeecCCCCCCCCCCCcEEEEEEEeecCCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhhhhh
Q psy5925 242 NYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTF 321 (696)
Q Consensus 242 ~~~LtilsleIe~~sr~~~~Pdp~~D~I~~I~~~~~~~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~~~ 321 (696)
.++++++||||||... .+|+|..|+|++|++...+. +-+++.. +
T Consensus 132 ~~~l~ilsfDIEt~~~--~~p~~~~d~Ii~Is~~~~~~--------~~~~t~~----------~---------------- 175 (775)
T 1qht_A 132 DEELTMLAFAIATLYH--EGEEFGTGPILMISYADGSE--------ARVITWK----------K---------------- 175 (775)
T ss_dssp CCCCCEEEEEEEECCC--TTCCTTCSCEEEEEEECSSC--------EEEEESS----------C----------------
T ss_pred CCCcEEEEEEEEEcCC--CCCCCCCCcEEEEEEEecCC--------CeeEeec----------c----------------
Confidence 3799999999999964 57999999999999764421 1111100 0
Q ss_pred hhccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCccc
Q psy5925 322 IENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQE 401 (696)
Q Consensus 322 ~~~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~ 401 (696)
.+ ...|..+++|++||.+|+++|+++|||||+|||+++||||||.+||+.+|++..
T Consensus 176 ------i~----------------~~~v~~~~~E~~LL~~f~~~i~~~dPDiivGyN~~~FDlpyL~~Ra~~~gi~~~-- 231 (775)
T 1qht_A 176 ------ID----------------LPYVDVVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFT-- 231 (775)
T ss_dssp ------CC----------------CSSEEECSCHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHTTCCCC--
T ss_pred ------cc----------------ccceEEcCCHHHHHHHHHHHHHhcCCCEEEEeCCCCccHHHHHHHHHHcCCCcc--
Confidence 00 113667999999999999999999999999999999999999999999999875
Q ss_pred ccccccccccccCCCccccceeeecccEEEehHHHHhhhcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHH
Q psy5925 402 LSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKW 481 (696)
Q Consensus 402 lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~ 481 (696)
+||.+....+.. .+. .....++||+++|+|+++++++++++|+|++||+++||.+|++++++++.+||.+++ .+.
T Consensus 232 lgR~~~~~~~~~-~g~--~~~~~i~Gr~~lDl~~~~k~~~~l~sysL~~Va~~~Lg~~K~dv~~~~i~~~~~~~~--~l~ 306 (775)
T 1qht_A 232 LGRDGSEPKIQR-MGD--RFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIAQAWESGE--GLE 306 (775)
T ss_dssp CSTTSCCCEEEE-ETT--EEEEECTTSEEEEHHHHHHHHSCCSCCCHHHHHHHHHCCCCCCCCHHHHHHHHTTTC--SHH
T ss_pred cccCCCcCceee-cCc--eeeEEecCeEEEEHHHHHHHhcCcCcCCHHHHHHHHhCCCCCccCHHHHHHHHhcCc--cHH
Confidence 898754322211 011 234678999999999999999999999999999999999999999999999999875 578
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccchhhhHHHHhCCchhhhhcCcchhhhHHHhhcccccCCeeeeCC-chhhhhccCCCC
Q psy5925 482 MTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSP-SIKQRAHMRAPE 560 (696)
Q Consensus 482 ~~i~Y~l~D~~l~~~L~~kl~ii~~~~ela~l~gi~~~~vl~rGs~~rvEslLlr~~~~~~~i~p~p-~~~q~~~~~~~~ 560 (696)
++++||++|+.++++|+.+ +++++.++|+++|+++.++.++|++.+||++|+++|+++||++|++ +..+....++.|
T Consensus 307 ~l~~Y~~~Da~lt~~L~~~--~~~~~~~la~i~g~~~~~v~r~~~~~~ve~~Ll~~~~~~~~i~P~~~~~~~~~~~~~~y 384 (775)
T 1qht_A 307 RVARYSMEDAKVTYELGRE--FFPMEAQLSRLIGQSLWDVSRSSTGNLVEWFLLRKAYKRNELAPNKPDERELARRRGGY 384 (775)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHTSCHHHHTTCCHHHHHHHHHHHHHHHTTBCCCCCCCHHHHHHTTTCC
T ss_pred HHHHHHHHHHHHHHHHHHh--hhHHHHHHHHHhCCCchhceecccHHHHHHHHhHHHHhCCEeCCCCCchhhhhcccccc
Confidence 9999999999999999976 4789999999999999999999999999999999999999999974 433322336889
Q ss_pred CCCeeeecccccccCceeeeeccccchhhhhhccCCccCcccccccCCCCCCCCCcccccccChhHHhhcccceeeCC-C
Q psy5925 561 SLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISP-S 639 (696)
Q Consensus 561 ~GglVleP~~Gly~~pVvvLDF~SLYPSIIiayNiC~sT~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~d~i~~~p-~ 639 (696)
.||+|+||++|+|++ |++|||+|||||||++|||||||+++... ++....| .
T Consensus 385 ~Gg~V~eP~~G~y~~-v~~lDF~SLYPSIi~~~nl~~~t~~~~~~--------------------------~~~~~~~~~ 437 (775)
T 1qht_A 385 AGGYVKEPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREGC--------------------------KEYDVAPEV 437 (775)
T ss_dssp CCCCBCCCCCSCEEE-EEEEECSSHHHHHHHHTTCSTTTBTCTTC--------------------------SCEEECTTT
T ss_pred CCceEecccCCcccc-eeecchhcccHHHHHhcCCCccccccccc--------------------------cccccCCcc
Confidence 999999999999987 99999999999999999999999975321 1111223 6
Q ss_pred CceeecCCCcccchHHHHHHHHHHHHHHHHHHhhCCCCHHHHHH---------hhhcccccc
Q psy5925 640 GVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL---------TMLNSMLLI 692 (696)
Q Consensus 640 g~~fvk~~~r~GILP~~L~~Ll~~R~~vKk~mk~~~~~~~l~~~---------l~ansmy~~ 692 (696)
|++|++. ++|++|++|++|+++|+++|+.||+.++ +.++++ +.||||||.
T Consensus 438 ~~~f~~~--~~g~lp~~l~~l~~~R~~~K~~~k~~~~-~~~~~~~d~~Q~A~Ki~~NS~YG~ 496 (775)
T 1qht_A 438 GHKFCKD--FPGFIPSLLGDLLEERQKIKRKMKATVD-PLEKKLLDYRQRAIKILANSFYGY 496 (775)
T ss_dssp CCEEECS--SCCHHHHHHHHHHHHHHHHHHHHHTCCC-HHHHHHHHHHHHHHHHHHTTHHHH
T ss_pred Ccccccc--cCCCchHHHHHHHHHHHHHHHHhhcCCC-HHHHHHHHHHHHhhheeecccccc
Confidence 8899987 8999999999999999999999998665 344443 457999984
No 5
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=100.00 E-value=2.4e-59 Score=549.35 Aligned_cols=306 Identities=17% Similarity=0.199 Sum_probs=256.3
Q ss_pred ceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeee
Q psy5925 346 LLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQM 425 (696)
Q Consensus 346 ~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i 425 (696)
+..|..|++|++||.+|+++++++|||||+|||+++||||||.+||+.||++.. +||.+....++..........+.+
T Consensus 195 ~~~V~~f~~E~~lL~~f~~~i~~~dPDii~g~N~~~FD~pyL~~Ra~~~~i~~~--lGR~~~~~~~~~~~~~~~~~~~~i 272 (786)
T 3k59_A 195 DFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRLPLR--LGRDNSELEWREHGFKNGVFFAQA 272 (786)
T ss_dssp SSEEEEESSHHHHHHHHHHHHHHHCCSEEEESSTTTTHHHHHHHHHHHHTCCCC--CBTTTBCCEEEECSSSTTCEEEEC
T ss_pred CceEEEeCCHHHHHHHHHHHHHHcCCCEEEecCCccCcHHHHHHHHHHhCCCce--eccCCCcccccccccCCCceeEEE
Confidence 467889999999999999999999999999999999999999999999999874 899764333321111111234789
Q ss_pred cccEEEehHHHHhh-hcCCCCCCHHHHHHHHcCCCcCCCC----hhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHH
Q psy5925 426 PGRIVINLWRLLRH-EVNLQSYTFENIMYHVLHERIPLHS----WKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQ 500 (696)
Q Consensus 426 ~GRl~lDl~~~~r~-~~kl~sysL~~Va~~~L~~~k~~~~----~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~k 500 (696)
+||+++|+|+++++ .+++.||+|++||+++||++|++.+ +++|.++|.++ ..++++||++||.++++|+.+
T Consensus 273 ~GRv~lDl~~~lk~~~~~l~SysL~~Va~~~Lg~~K~~~~~~~~~~eI~~~~~~~----~~~L~~Y~l~Da~L~~~L~~k 348 (786)
T 3k59_A 273 KGRLIIDGIEALKSAFWNFSSFSLETVAQELLGEGKSIDNPWDRMDEIDRRFAED----KPALATYNLKNCELVTQIFHK 348 (786)
T ss_dssp TTCEEEEHHHHHHHTTCCCSCCSHHHHHHHHHCCCCC-CCHHHHHHHHHHHHHHC----HHHHHHHHHHHHHHHHHHHHH
T ss_pred cCEEEEEhHHHHHhccCCCCCCCHHHHHHHHhCCCCcccCccccHHHHHHHHhcC----HHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999997 5799999999999999999998665 37899999876 479999999999999999999
Q ss_pred hcccchhhhHHHHhCCchhhhhcCcchhhhHHHhhcccccCCeeeeCCchhhhhccCCCCCCCeeeecccccccCceeee
Q psy5925 501 LDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580 (696)
Q Consensus 501 l~ii~~~~ela~l~gi~~~~vl~rGs~~rvEslLlr~~~~~~~i~p~p~~~q~~~~~~~~~GglVleP~~Gly~~pVvvL 580 (696)
+++++++.|+|+++|++|+++ +||+.++|++++++++++||++|++... ....|.||+|+||++|+|++ |+||
T Consensus 349 l~ll~~~~elarl~Gi~~~~~--ggs~~~~~~lll~~~~~~~~i~P~~~~~----~~~~y~Gg~V~eP~~G~y~~-V~~l 421 (786)
T 3k59_A 349 TEIMPFLLERATVNGLPVDRH--GGSVAAFGHLYFPRMHRAGYVAPNLGEV----PPHASPGGYVMDSRPGLYDS-VLVL 421 (786)
T ss_dssp HTHHHHHHHHHHHHCSCTTCC--CCHHHHHHHHHHHHHHHTTBCCCCTTSS----CCCCCCCCCBCCCCCEEESC-EEEE
T ss_pred hhHHHHHHHHHHHhCCCHHHc--ccHHHHHHHHHHHHHHHcCeeCCCcccc----ccccCCCcEEeeccCCceee-EEEE
Confidence 999999999999999999995 7888889999999999999999875422 24678999999999999976 9999
Q ss_pred eccccchhhhhhccCCccCcccccccCCCCCCCCCcccccccChhHHhhcccceeeCCCCceeecCCCcccchHHHHHHH
Q psy5925 581 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEI 660 (696)
Q Consensus 581 DF~SLYPSIIiayNiC~sT~~~~~~~~~~~~~~~~G~~~~~~~~~~l~~~~d~i~~~p~g~~fvk~~~r~GILP~~L~~L 660 (696)
||+|||||||++|||||+|++...... . .++...+|+|++|++ ++||||+||++|
T Consensus 422 DF~SLYPSIi~~~ni~~~t~~~~~~~~--~--------------------~~~~~~~~~g~~f~~---~~g~lp~~l~~l 476 (786)
T 3k59_A 422 DYKSLYPSIIRTFLIDPVGLVEGMAQP--D--------------------PEHSTEGFLDAWFSR---EKHCLPEIVTNI 476 (786)
T ss_dssp EETTHHHHHHHHHCCCHHHHHHHHHSC--S--------------------TTTEEECSTTCEEES---SCCSHHHHHHHH
T ss_pred EhhhccHHHHHHhCCCccccccccCCc--c--------------------ccccccCCCCceEee---cCCchHHHHHHH
Confidence 999999999999999999986422110 0 133455789999998 699999999999
Q ss_pred HHHHHHHHHHHhhCCCCHHHHHHhhhcccccc
Q psy5925 661 LDTRLMVKQSMKEYKFSESLRNLTMLNSMLLI 692 (696)
Q Consensus 661 l~~R~~vKk~mk~~~~~~~l~~~l~ansmy~~ 692 (696)
+++|+++|+.|++.. +.-.| +.|||+||.
T Consensus 477 ~~~R~~~K~~~~~~~--q~AlK-i~~Ns~YG~ 505 (786)
T 3k59_A 477 WHGRDEAKRQGNKPL--SQALK-IIMNAFYGV 505 (786)
T ss_dssp HHHHHHHHHTTCHHH--HHHHH-HHHHHHHHG
T ss_pred HHHHHHHHHhcchHH--HHhhh-eeeeccccc
Confidence 999999999886421 11122 567999985
No 6
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=100.00 E-value=2.1e-54 Score=514.20 Aligned_cols=359 Identities=14% Similarity=0.139 Sum_probs=268.7
Q ss_pred CCCceEEEEEEEeec-CCCCCCCCCC--CcEEEEEEEeecCCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhh
Q psy5925 242 NYYLTVLAVEIHAIS-RALLKPDPAY--DEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELF 318 (696)
Q Consensus 242 ~~~LtilsleIe~~s-r~~~~Pdp~~--D~I~~I~~~~~~~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~ 318 (696)
.|+++++||||||.| +++.||||+. |+|++|++. ..+. ..+++++++.....
T Consensus 187 ~p~l~ilsfDIEt~s~~~g~fP~~~~~~d~Ii~Is~~-~~~g-----~~~~~~~~~~~~~~------------------- 241 (847)
T 1s5j_A 187 IPKIKRVAIDIEVYTPVKGRIPDSQKAEFPIISIALA-GSDG-----LKKVLVLNRNDVNE------------------- 241 (847)
T ss_dssp CCCCCEEEEEEEECCSSSSCCCCTTTCCSCEEEEEEE-ETTS-----CEEEEEECSSCCCC-------------------
T ss_pred CCCceEEEEEEEeCcCCCCCCCCccccCCcEEEEEEE-ccCC-----CcEEEEEeCCcccc-------------------
Confidence 799999999999965 5678999986 899999985 2221 23577775432110
Q ss_pred hhhhhccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCC
Q psy5925 319 STFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL 398 (696)
Q Consensus 319 ~~~~~~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~ 398 (696)
++ .++ .+..|..|++|++||.+|+++|++ +|+|+|||+++||||||.+||+.+|++.
T Consensus 242 ----------~~-----~~i------~~~~v~~~~~E~~LL~~f~~~i~~--~diivgyN~~~FDlPyL~~Ra~~lgi~~ 298 (847)
T 1s5j_A 242 ----------GS-----VKL------DGISVERFNTEYELLGRFFDILLE--YPIVLTFNGDDFDLPYIYFRALKLGYFP 298 (847)
T ss_dssp ----------CC-----EEE------TTEEEEEESSHHHHHHHHHHHHTT--CSEEEESSTTTTHHHHHHHHHHTTTCCG
T ss_pred ----------cc-----cCC------CCCeEEEeCCHHHHHHHHHHHhcc--CCEEEEeCCCCchHHHHHHHHHHcCCCc
Confidence 00 000 246788999999999999999975 4799999999999999999999999863
Q ss_pred cccccccccccccccCCCccccceeeecccEEEehHHHHhhh--------cCCCCCCHHHHHHHHcCCCcCCCChhhHHH
Q psy5925 399 NQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE--------VNLQSYTFENIMYHVLHERIPLHSWKLLTC 470 (696)
Q Consensus 399 ~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~--------~kl~sysL~~Va~~~L~~~k~~~~~~~l~~ 470 (696)
. +.+. ... |. ....+.||+++|+|+.++.+ .++.+|+|++||+++||++|.+++ .++
T Consensus 299 ~----~~p~----~~~-gr---~~~~i~gr~~~Dl~~~~~~~~~~~y~f~~kl~sysL~~Va~~~Lg~~K~dv~-~~i-- 363 (847)
T 1s5j_A 299 E----EIPI----DVA-GK---DEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVD-TLI-- 363 (847)
T ss_dssp G----GCSE----ECC-ST---TCCEETTSEEEEHHHHHTSHHHHHHTSTTCCSSCSHHHHHHHHHCCCCC--S-SCT--
T ss_pred c----cCCe----eec-CC---CceEeccEEEeehHHHHhhhhhhhhccccccccccHHHHHHHHhCCCCcchh-Hhh--
Confidence 2 1110 000 00 12467999999999998752 267899999999999999998885 322
Q ss_pred HHhcCCcccHHHHHHHHHHHHHHHHHHH--HHhcccchhhhHHHHhCCchhhhhcCcchhhhHHHhhcccccCCeeeeCC
Q psy5925 471 WWEHRTHLYKWMTVEHYLIRVTGIIRLI--EQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSP 548 (696)
Q Consensus 471 ~~~~~~~~~~~~~i~Y~l~D~~l~~~L~--~kl~ii~~~~ela~l~gi~~~~vl~rGs~~rvEslLlr~~~~~~~i~p~p 548 (696)
... .++++++||++||.++++|+ .+..+++++.++|+++|+++.++.+.|++.+||++|+++|+++||++|++
T Consensus 364 --~~~---~~~~l~~Ycl~Da~lt~~L~~~~~~~~~~~~~~la~i~~lp~~~l~r~~~~~~v~slll~~~~~~~~i~P~~ 438 (847)
T 1s5j_A 364 --SFL---DVEKLIEYNFRDAEITLQLTTFNNDLTMKLIVLFSRISRLGIEELTRTEISTWVKNLYYWEHRKRNWLIPLK 438 (847)
T ss_dssp --TTC---CHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHCCCHHHHTTSCHHHHHHHHHHHHHHHHTBCCCCH
T ss_pred --hhc---cHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHhCCCchhhcccchhhhhHHHHHHHHHhcCcccCCc
Confidence 222 47999999999999999995 45668899999999999999999777888999999999999999999887
Q ss_pred chhhhh-c--------cCCCCCCCeeeecccccccCceeeeeccccchhhhhhccCCccCcccccccCCCCCCCCCcccc
Q psy5925 549 SIKQRA-H--------MRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCID 619 (696)
Q Consensus 549 ~~~q~~-~--------~~~~~~GglVleP~~Gly~~pVvvLDF~SLYPSIIiayNiC~sT~~~~~~~~~~~~~~~~G~~~ 619 (696)
...... . ....|.||+|+||++|+|++ |++|||+||||||||||||||||+++..+.. .
T Consensus 439 ~~~~~~~~~~~~~~~~~~~~y~Gg~V~eP~~G~y~~-v~~lDf~SLYPSIi~~~Nl~~~T~~~~~~~~--~--------- 506 (847)
T 1s5j_A 439 EEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIFFN-ITVLDFASLYPSIIRTWNLSYETVDIQQCKK--P--------- 506 (847)
T ss_dssp HHHHHTTCC--------------CCCCCCCSEEEEE-EEEEEETTHHHHHHHHTTCCTTTBSCSCCSS--C---------
T ss_pred hhhhhhcccccchhccccccccCCcccCCCCCcccc-eeEeehhhhchHHHHHcCCCcceeccccccc--c---------
Confidence 532210 0 13579999999999999986 9999999999999999999999998631100 0
Q ss_pred cccChhHHhhcccceeeCCCCceeecCCCcccchHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHH---------hhhccc
Q psy5925 620 LNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY-KFSESLRNL---------TMLNSM 689 (696)
Q Consensus 620 ~~~~~~~l~~~~d~i~~~p~g~~fvk~~~r~GILP~~L~~Ll~~R~~vKk~mk~~-~~~~~l~~~---------l~ansm 689 (696)
.+.....|++..|+.+ .++|++|.+|++|++.|+++|+.|++. +.++.++++ +.||||
T Consensus 507 -----------~~~~~~~~~~~~~~~~-~~~g~~p~~l~~l~~~R~~~kk~~~k~~~~~~~~~~~~d~~Q~AlKi~~NS~ 574 (847)
T 1s5j_A 507 -----------YEVKDETGEVLHIVCM-DRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQRAMKVFINAT 574 (847)
T ss_dssp -----------CEECCSSSCCCEEBCC-SSCCHHHHHHHHHHHHHHHTHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------ccccccCCCCceeEec-cCCcccHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 0111224555455553 489999999999999999999988765 345654443 557999
Q ss_pred ccc
Q psy5925 690 LLI 692 (696)
Q Consensus 690 y~~ 692 (696)
||.
T Consensus 575 YG~ 577 (847)
T 1s5j_A 575 YGV 577 (847)
T ss_dssp HHH
T ss_pred ccc
Confidence 984
No 7
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=100.00 E-value=3.1e-38 Score=345.97 Aligned_cols=271 Identities=16% Similarity=0.161 Sum_probs=198.6
Q ss_pred CCCceEEEEEEEeecCCCCCCCCCC--CcEEEEEEEeecCCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhhh
Q psy5925 242 NYYLTVLAVEIHAISRALLKPDPAY--DEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFS 319 (696)
Q Consensus 242 ~~~LtilsleIe~~sr~~~~Pdp~~--D~I~~I~~~~~~~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~ 319 (696)
.|++++|||||||.+ +.||+|+. |||++|++....+. ...-+++++++.. ...|+..+. . ..
T Consensus 103 ~p~l~vlsfDIEt~~--~~fP~~~~~~d~Ii~Is~~~~~~~----~~~~~~l~~~~~~----~~~~~~~~~----~--~~ 166 (388)
T 1noy_A 103 RKFVRVANCDIEVTG--DKFPDPMKAEYEIDAITHYDSIDD----RFYVFDLLNSMYG----SVSKWDAKL----A--AK 166 (388)
T ss_dssp GGGCCEEEEEEEECC--SSCCCTTTCCSCEEEEEEEETTTT----EEEEEEECCCSSC----CCCCCCHHH----H--HS
T ss_pred CCCeEEEEEEEEeCC--CCCCCCCCCCCeEEEEEEEEecCC----eEEEEEEeeccCC----CCCcccccc----c--cc
Confidence 689999999999987 57999986 59999998655332 0112333544311 112322100 0 00
Q ss_pred hhhhccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHH-cCC--
Q psy5925 320 TFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV-LGL-- 396 (696)
Q Consensus 320 ~~~~~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~-lgi-- 396 (696)
....++..+++. . +.++.|..+++|++||.+|+++|+++|||||+|||+++||||||.+||+. +|+
T Consensus 167 ~~~f~~~~~~~~--~---------~~~v~v~~~~~E~~LL~~f~~~i~~~dPDii~GyN~~~FDlpyL~~Ra~~~lg~~l 235 (388)
T 1noy_A 167 LDCEGGDEVPQE--I---------LDRVIYMPFDNERDMLMEYINLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERS 235 (388)
T ss_dssp CGGGTCCCCCHH--H---------HTTEEEEEESCHHHHHHHHHHHHHHSCCSEEECSSTTTTHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccc--c---------CCCeEEEEcCCHHHHHHHHHHHHHHhCCcEEEecCCCCccHHHHHHHHHHHcCCcc
Confidence 011122233210 0 12467889999999999999999999999999999999999999999998 995
Q ss_pred -CCcccccccccccccccCCCccccceeeecccEEEehHHHHhh-hcC-CCCCCHHHHHHHHcCCCcCCCChhhHHHHHh
Q psy5925 397 -NLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH-EVN-LQSYTFENIMYHVLHERIPLHSWKLLTCWWE 473 (696)
Q Consensus 397 -~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~-~~k-l~sysL~~Va~~~L~~~k~~~~~~~l~~~~~ 473 (696)
+.++.+||....... ...+.+. ...++||+++|+|.++|+ +++ ++||+|++||+++||++|.+++ +++.+||+
T Consensus 236 ~~~~s~~~r~~~~~~~-~~~g~~~--~~~i~GR~~lD~~~~~k~~~~~~l~sysL~~Va~~~Lg~~K~d~~-~~i~~~~~ 311 (388)
T 1noy_A 236 MKRFSPIGRVKSKLLQ-NMYGSKE--IYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYD-GPINKLRE 311 (388)
T ss_dssp HGGGSTTSCEEEEECC-GGGCSCE--EEEETTSEECCHHHHHHHHTCCCCSCCSHHHHHHHHHSCCCCCCS-SCGGGHHH
T ss_pred ccccCcccccccccCh-hhhCCcc--eEEEcCeEEeEHHHHHhhcCcCcccCCCHHHHHHHHhCCCCCCcH-HHHHHHHH
Confidence 445556765432210 0011111 378999999999999999 687 9999999999999999999986 88999998
Q ss_pred cCCcccHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHhCCchhhhhcCcchhhh-HHHhhcccccCCeeeeCCch
Q psy5925 474 HRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV-ESIMLRLSRLNNFVAVSPSI 550 (696)
Q Consensus 474 ~~~~~~~~~~i~Y~l~D~~l~~~L~~kl~ii~~~~ela~l~gi~~~~vl~rGs~~rv-EslLlr~~~~~~~i~p~p~~ 550 (696)
+ .+.++++||++||.++++|+.++++++++.|+|+++|++|++++ | |.++ |++|+|+|+++|||+|++..
T Consensus 312 ~----~~~~l~~Y~~~D~~l~~~L~~kl~~l~~~~ela~i~g~~~~~vl--~-q~~~~~~lll~~~~~~~~i~P~~~~ 382 (388)
T 1noy_A 312 T----NHQRYISYNIIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVM--S-PIKTWDAIIFNSLKGEHKVIPQQGS 382 (388)
T ss_dssp H----HHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHTCCGGGGG--C-HHHHHHHHHHHHTTCC---------
T ss_pred h----CHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHhCccCCCHHHhC--c-cHHHHHHHHHHHHHhCCEEcccCCc
Confidence 3 37899999999999999999999999999999999999999998 3 5665 67999999999999988754
No 8
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA replication, DNA-BI DNA-directed DNA polymerase, exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A {Saccharomyces cerevisiae}
Probab=99.75 E-value=1.3e-19 Score=216.49 Aligned_cols=137 Identities=23% Similarity=0.400 Sum_probs=104.7
Q ss_pred hhHHHHHHhhhCCCCCCCCCccCCCCcCCCCCccccCCCCCCCcccCceeeeeccccchhhhhhhccCcccccccc--CC
Q psy5925 67 CFEESSLERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRV--EH 144 (696)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~y~~~~~~~~~~~~t~~~~~--~~ 144 (696)
+.+|++|+|+|+++|+++|+++......+|+|++|. +|++|+|.+||++|||+||||||||||||||+|++... +.
T Consensus 492 i~ves~Llr~a~~~~~ilP~~~~~~~~~~y~Gg~V~--eP~~G~y~~pV~~lDF~SLYPSIi~~~Nlc~~Tl~~~~~~~~ 569 (919)
T 3iay_A 492 IKVVSQLFRKCLEIDTVIPNMQSQASDDQYEGATVI--EPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVER 569 (919)
T ss_dssp HHHHHHHHHHHHHTTEECBCCCCCCCSSCCCCCCBC--CCCCEEECSCEEEEEETTHHHHHHHHTTCSGGGEECHHHHHH
T ss_pred HHHHHHHHHHHhhCCeeCCCcccccccccCCCCEEe--cCCCCceeccEEEEEecccchHHHHhcCcCcccccccchhhh
Confidence 456699999999999999998754455789999999 99999999999999999999999999999999998742 22
Q ss_pred CC--C-CCeeeeeecccccccCCCCCCCcceeeeccCCcccCCcccccchhhHHHHH--HHh-------cCCc-cccccc
Q psy5925 145 LG--V-SDSFPFGCIASRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFI--RKQ-------LETP-KRRICD 211 (696)
Q Consensus 145 ~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~r~-------~~~p-~~~~~~ 211 (696)
++ + .++. . .| +| +.|++ ++++.++++++++.|| |++ ..|| +..+.+
T Consensus 570 ~~~~~~~~~~-~----------~p-~g---~~f~~------~~~~~gilp~~l~~ll~~R~~~K~~mk~~~d~~~~~~ld 628 (919)
T 3iay_A 570 LNLKIDEDYV-I----------TP-NG---DYFVT------TKRRRGILPIILDELISARKRAKKDLRDEKDPFKRDVLN 628 (919)
T ss_dssp TTCCBTTTEE-E----------CT-TS---CEEEC------TTTCCCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred cCCCCCccee-e----------CC-CC---cEEec------cCCCCCchHHHHHHHHHHHHHHHHHHhhcCChHHHHHHH
Confidence 21 1 1332 1 12 33 35888 8999999999999999 332 2466 555555
Q ss_pred ccc--ccCCCCCCccccc
Q psy5925 212 SYA--IDAMTPDTTGDYQ 227 (696)
Q Consensus 212 ~~~--I~~~t~~~~~gfk 227 (696)
..| ++- +.++.||+-
T Consensus 629 ~~Q~AlKi-~~NS~YG~~ 645 (919)
T 3iay_A 629 GRQLALKI-SANSVYGFT 645 (919)
T ss_dssp HHHHHHHH-HHHHHHHHH
T ss_pred HHHHhhcc-ccccccccc
Confidence 555 443 556778775
No 9
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A {Human herpesvirus 1} PDB: 1dml_B*
Probab=99.70 E-value=1.6e-18 Score=211.27 Aligned_cols=151 Identities=21% Similarity=0.289 Sum_probs=104.9
Q ss_pred ccccccceeeeehhHHHHHHhhhCCCCCCCCCccCCC-------------------------------------------
Q psy5925 55 RRDSMKGIVDVKCFEESSLERSMKPDDRPSPTRKNKS------------------------------------------- 91 (696)
Q Consensus 55 r~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~~~~~~------------------------------------------- 91 (696)
.+++..|| +. .+|++|+++|+++|+++|++....
T Consensus 568 ~~vl~~G~-~i--rves~Ll~~a~~~~~ilP~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 644 (1193)
T 2gv9_A 568 TRTIYDGQ-QI--RVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREPEGA 644 (1193)
T ss_dssp GGTTSSCS-TH--HHHHHHHHHHHHHTEECBCCC----------------------------------------------
T ss_pred HHHhcCcc-HH--HHHHHHHHHHHHCCEeCCCcccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 44455666 44 456999999999999999975321
Q ss_pred -----CcCCCCCccccCCCCCCCcccCceeeeeccccchhhhhhhccCcccccccc---CCCCC-CCeeeeeeccccccc
Q psy5925 92 -----TRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRV---EHLGV-SDSFPFGCIASRESN 162 (696)
Q Consensus 92 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~y~~~~~~~~~~~~t~~~~~---~~~~~-~~~~~~~~~~~~~~~ 162 (696)
...+|+|++|. +|++|+|.+||++|||+||||||||+|||||+|++... +++.+ .||..+..
T Consensus 645 ~~~~~~~~~Y~Gg~Vl--eP~~Gly~~pV~vLDF~SLYPSII~a~Nlc~sTl~~~~~~~~~l~~~~dy~~~~~------- 715 (1193)
T 2gv9_A 645 RETAGRHVGYQGAKVL--DPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRADAVAHLEAGKDYLEIEV------- 715 (1193)
T ss_dssp --------------CC--CCCCEEECSCEEEEEEETHHHHHHHHTTCCTTTEESCSTTSTTCCTTTTEEEEEC-------
T ss_pred hhccccccccCCCEEe--ecCCCeeeCcEEEEeccccchHHHHHhcCCcceeccCchhhccCCCccceeEecC-------
Confidence 11279999999 99999999999999999999999999999999999753 33433 36655553
Q ss_pred CCCCCCCcceeeeccCCcccCCcccccchhhHHHHH--HHh----c--CCc-ccccccccc--ccCCCCCCccccccC
Q psy5925 163 QSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFI--RKQ----L--ETP-KRRICDSYA--IDAMTPDTTGDYQMG 229 (696)
Q Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~r~----~--~~p-~~~~~~~~~--I~~~t~~~~~gfk~~ 229 (696)
++. ..+|++ +|++.++++++++.|+ |++ + .+| +..+.+..| ++- +.++.||+.-.
T Consensus 716 ----~~~-~~~fvk------~~~~~gilp~lL~~ll~~Rk~~K~~mk~~~~~~~~llD~~QlAlKi-~aNS~YG~~G~ 781 (1193)
T 2gv9_A 716 ----GGR-RLFFVK------AHVRESLLSILLRDWLAMRKQIRSRIPQSSPEEAVLLDKQQAAIKV-VCNSVYGFTGV 781 (1193)
T ss_dssp ----SSS-EEEEEC------TTTSCCHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred ----CCC-ceeecc------CccccchHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHH-hhcceeccccc
Confidence 222 345888 8999999999999999 332 2 255 455556555 444 56778888643
No 10
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=99.69 E-value=9.6e-17 Score=183.46 Aligned_cols=209 Identities=11% Similarity=0.027 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCC-------c--ccccccccccccccCCCccccceeeecc--
Q psy5925 359 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL-------N--QELSRITEVEKRNSSRDEVKNTQLQMPG-- 427 (696)
Q Consensus 359 L~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~-------~--~~lgR~~~~~~~~~~~~~~~~~~~~i~G-- 427 (696)
|.+|++.+..+||||+ +||+ +||+.+|.+|+..+|... . ..++|....-.+. ......|
T Consensus 44 l~~fi~~~~~~~~~i~-~hNl-~FD~~~l~~~~~~~~~~~~~~~~p~~~~~~i~r~~~~~~~~--------i~~~~~~k~ 113 (575)
T 2py5_A 44 LDEFMAWVLKVQADLY-FHNL-KFAGAFIINWLERNGFKWSADGLPNTYNTIISRMGQWYMID--------ICLGYKGKR 113 (575)
T ss_dssp HHHHHHHHHHHCCEEE-ETTH-HHHHHHHHHHHHHTTCEECTTCCTTEEEEEEBTTCCEEEEE--------EEEEEETTE
T ss_pred HHHHHHHHHHcCCEEE-EECh-hhhHHHHHHHHHHhCcccccccccccccceeccCCeEEEEE--------EEEecCCCc
Confidence 5778888899999955 5999 999999999999886321 1 0134332211000 0111122
Q ss_pred cEEEehHHHHhhhcCCCCCCHHHHHHHHcCC-CcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcccch
Q psy5925 428 RIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGR 506 (696)
Q Consensus 428 Rl~lDl~~~~r~~~kl~sysL~~Va~~~L~~-~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl~ii~~ 506 (696)
++++|++..++. .++||+++|+.+..+ .|..+++..+.. ..-.....+++||++||.++.+++.+. +..
T Consensus 114 ~~~i~~~Ds~~~----~~~SL~~~a~~f~~~~~K~~~py~~~~~----~~~~~~~~~~~Y~~~Dv~ll~~i~~~~--f~~ 183 (575)
T 2py5_A 114 KIHTVIYDSLKK----LPFPVKKIAKDFKLTVLKGDIDYHKERP----VGYKITPEEYAYIKNDIQIIAEALLIQ--FKQ 183 (575)
T ss_dssp EEEEEEEEHHHH----SCSCHHHHHHHTTCCCCSSCCCTTSCCC----TTCCCCHHHHHHHHHHHHHHHHHHHHH--HHT
T ss_pred eEEEEEEEhHhh----hhhhHHHHHHHhCCcccCCccCccccCc----ccchhhHHHHHHHHHHHHHHHHHHHHH--HHh
Confidence 256666655543 368999999998754 455665543321 111135778999999999999998865 333
Q ss_pred hhhHHHHhCCchhhhhcCcchhhhHHHhhcccccCCeeeeCCchhhhhccCCCCCCCeeee-cc--cccccCceeeeecc
Q psy5925 507 TSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILE-PE--SRLYTDPIIVLDFQ 583 (696)
Q Consensus 507 ~~ela~l~gi~~~~vl~rGs~~rvEslLlr~~~~~~~i~p~p~~~q~~~~~~~~~GglVle-P~--~Gly~~pVvvLDF~ 583 (696)
..+-..++|+++.... +. + ....-+..+|.++.......+..+.||.|+. |. .|++++ |.++||+
T Consensus 184 ~~~~~Tissla~~~f~--------~~--~-~~~~~~~~~p~~~~~~~~~ir~~y~GGr~~~~p~y~~~~~~~-i~~~D~~ 251 (575)
T 2py5_A 184 GLDRMTAGSDSLKGFK--------DI--I-TTKKFKKVFPTLSLGLDKEVRYAYRGGFTWLNDRFKEKEIGE-GMVFDVN 251 (575)
T ss_dssp TCCSSSHHHHHHHHHH--------HH--H-CHHHHHHHSCCCCHHHHHHHHTTCCCCCEEECGGGBTCEECS-EEEEEET
T ss_pred hhhhcccccHHHHHHH--------hH--h-hhccchhhcccCCchHHHHHHHcCCCccccccccccccCCCc-eEEEecC
Confidence 3344555555554421 00 1 0111122234443322112346788999984 55 567865 9999999
Q ss_pred ccchhhhhh--ccCCccC
Q psy5925 584 SLYPSVIIA--YNYCFST 599 (696)
Q Consensus 584 SLYPSIIia--yNiC~sT 599 (696)
|||||+|.. +++..-+
T Consensus 252 SLYPs~m~~~~~P~g~p~ 269 (575)
T 2py5_A 252 SLYPAQMYSRLLPYGEPI 269 (575)
T ss_dssp THHHHHHHHSCEEEEEEE
T ss_pred CchHHHHcCCCCCCCCce
Confidence 999999997 5555333
No 11
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B polymer alpha family polymerase, transferase; 2.10A {Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A 2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A* 4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Probab=99.53 E-value=1.1e-15 Score=180.68 Aligned_cols=132 Identities=22% Similarity=0.303 Sum_probs=96.9
Q ss_pred hhHHHHHHhhhCCCCCCCCCccCCCC----cCCCCCccccCCCCCCCcccCceeeeeccccchhhhhhhccCcccccccc
Q psy5925 67 CFEESSLERSMKPDDRPSPTRKNKST----RSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRV 142 (696)
Q Consensus 67 ~~~~~~l~~~~~~~~~~~p~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~y~~~~~~~~~~~~t~~~~~ 142 (696)
..+|++|+++|+++|+++|+++.... ..+|+|++|. +|++|+|.+ |++|||+|||||||++|||||+|++...
T Consensus 351 ~~ve~~Ll~~~~~~~~i~P~~~~~~~~~~~~~~y~Gg~V~--eP~~G~y~~-v~~lDF~SLYPSIi~~~nl~~~t~~~~~ 427 (775)
T 1qht_A 351 NLVEWFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVK--EPERGLWDN-IVYLDFRSLYPSIIITHNVSPDTLNREG 427 (775)
T ss_dssp HHHHHHHHHHHHHTTBCCCCCCCHHHHHHTTTCCCCCCBC--CCCCSCEEE-EEEEECSSHHHHHHHHTTCSTTTBTCTT
T ss_pred HHHHHHHhHHHHhCCEeCCCCCchhhhhccccccCCceEe--cccCCcccc-eeecchhcccHHHHHhcCCCcccccccc
Confidence 46899999999999999999764321 3689999999 999999987 9999999999999999999999997532
Q ss_pred CCCCCCCeeeeeecccccccCCCCCCCcceeeeccCCcccCCcccccchhhHHHHH--HHh-------cCCc-ccccccc
Q psy5925 143 EHLGVSDSFPFGCIASRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFI--RKQ-------LETP-KRRICDS 212 (696)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~r~-------~~~p-~~~~~~~ 212 (696)
. .|+. . .|.. -+.|++ .+.++++.+++.|+ |++ ..|| ...+.+.
T Consensus 428 ~----~~~~---~--------~~~~---~~~f~~--------~~~g~lp~~l~~l~~~R~~~K~~~k~~~~~~~~~~~d~ 481 (775)
T 1qht_A 428 C----KEYD---V--------APEV---GHKFCK--------DFPGFIPSLLGDLLEERQKIKRKMKATVDPLEKKLLDY 481 (775)
T ss_dssp C----SCEE---E--------CTTT---CCEEEC--------SSCCHHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHH
T ss_pred c----cccc---c--------CCcc---Cccccc--------ccCCCchHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHH
Confidence 1 1221 1 0111 234665 26789999999999 332 2466 5555655
Q ss_pred cc--ccCCCCCCcccccc
Q psy5925 213 YA--IDAMTPDTTGDYQM 228 (696)
Q Consensus 213 ~~--I~~~t~~~~~gfk~ 228 (696)
.| ++- +.++.||+.-
T Consensus 482 ~Q~A~Ki-~~NS~YG~~g 498 (775)
T 1qht_A 482 RQRAIKI-LANSFYGYYG 498 (775)
T ss_dssp HHHHHHH-HHTTHHHHHH
T ss_pred HHHhhhe-eecccccccc
Confidence 55 443 5577888864
No 12
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT; 1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A* 3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A* 4dtn_A* 4dto_A* 4dtp_A* 4dtr_A* 4dts_A* 4dtu_A* 4dtx_A* 4e3s_A* 4fjm_A* 4fjl_A* 3spz_A* ...
Probab=99.53 E-value=4.3e-15 Score=175.79 Aligned_cols=74 Identities=20% Similarity=0.380 Sum_probs=65.5
Q ss_pred eehhHHHHHHhhhCCCCCCCCCccCCCCcCCCCCccccCCCCCCCcccCceeeeeccccchhhhhhhccCccccccccC
Q psy5925 65 VKCFEESSLERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVE 143 (696)
Q Consensus 65 ~~~~~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~y~~~~~~~~~~~~t~~~~~~ 143 (696)
.+++ |++|+|+|+++|+++|++.+. ...+|+|++|. +|.+|+|. +|++|||+|||||||++||+||+|+++...
T Consensus 362 ~~v~-e~LLlr~a~~~~~iiP~~~~~-~~~~y~Gg~V~--~p~~G~y~-~v~~lDf~SLYPsIi~~~ni~~~T~~~~~~ 435 (903)
T 3qex_A 362 IKTW-DAIIFNSLKEQNKVIPQGRSH-PVQPYPGAFVK--EPIPNRYK-YVMSFDLTSLYPSIIRQVNISPETIAGTFK 435 (903)
T ss_dssp HHHH-HHHHHHHHHTTTEECCCCCCC-CCCCCCCCCBC--CCCCEECS-SEEEEEETTHHHHHHHHHTCCGGGEEEECC
T ss_pred HHHH-HHHHHHHHHHCCEeccCCccc-ccCCCCCCEEe--cccCCceE-EEEEEehhhhchHHHHHhCcChhhcccccc
Confidence 4444 899999999999999998754 34789999999 99999997 499999999999999999999999997643
No 13
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA repair, DNA-binding; HET: DNA DOC DCP; 1.92A {Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A* 3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Probab=99.43 E-value=4.5e-14 Score=166.04 Aligned_cols=102 Identities=16% Similarity=0.144 Sum_probs=78.4
Q ss_pred HHHHHHhhhCCCCCCCCCccCCCCcCCCCCccccCCCCCCCcccCceeeeeccccchhhhhhhccCccccccccCCCCCC
Q psy5925 69 EESSLERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVS 148 (696)
Q Consensus 69 ~~~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~y~~~~~~~~~~~~t~~~~~~~~~~~ 148 (696)
+|++++++|+++|+++|++.+.. ..+|+|++|. +|++|+|++ |+||||+||||||||+||+|++|++..... + .
T Consensus 376 ~~~lll~~~~~~~~i~P~~~~~~-~~~y~Gg~V~--eP~~G~y~~-V~~lDF~SLYPSIi~~~ni~~~t~~~~~~~-~-~ 449 (786)
T 3k59_A 376 FGHLYFPRMHRAGYVAPNLGEVP-PHASPGGYVM--DSRPGLYDS-VLVLDYKSLYPSIIRTFLIDPVGLVEGMAQ-P-D 449 (786)
T ss_dssp HHHHHHHHHHHTTBCCCCTTSSC-CCCCCCCCBC--CCCCEEESC-EEEEEETTHHHHHHHHHCCCHHHHHHHHHS-C-S
T ss_pred HHHHHHHHHHHcCeeCCCccccc-cccCCCcEEe--eccCCceee-EEEEEhhhccHHHHHHhCCCccccccccCC-c-c
Confidence 37888999999999999987654 4789999999 999999976 999999999999999999999998754321 1 1
Q ss_pred CeeeeeecccccccCCCCCCCcceeeeccCCcccCCcccccchhhHHHHH
Q psy5925 149 DSFPFGCIASRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFI 198 (696)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 198 (696)
+...+. .| ++ +.|.+ +.++++++++.++
T Consensus 450 ~~~~~~---------~~-~g---~~f~~---------~~g~lp~~l~~l~ 477 (786)
T 3k59_A 450 PEHSTE---------GF-LD---AWFSR---------EKHCLPEIVTNIW 477 (786)
T ss_dssp TTTEEE---------CS-TT---CEEES---------SCCSHHHHHHHHH
T ss_pred cccccc---------CC-CC---ceEee---------cCCchHHHHHHHH
Confidence 111111 11 22 23554 5778999999988
No 14
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET: DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5 e.8.1.1
Probab=99.43 E-value=2.5e-14 Score=170.30 Aligned_cols=138 Identities=12% Similarity=0.165 Sum_probs=89.5
Q ss_pred eeehhHHHHHHhhhCCCCCCCCCccCC-----C-------CcCCCCCccccCCCCCCCcccCceeeeeccccchhhhhhh
Q psy5925 64 DVKCFEESSLERSMKPDDRPSPTRKNK-----S-------TRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSVIIAY 131 (696)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~p~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~s~y~~~~~~~ 131 (696)
..+.++|++|+++|+++|+++|++.+. + ...+|+|++|. +|++|+|.+ |++|||+||||||||||
T Consensus 415 ~~~~~v~slll~~~~~~~~i~P~~~~~~~~~~~~~~~~~~~~~~y~Gg~V~--eP~~G~y~~-v~~lDf~SLYPSIi~~~ 491 (847)
T 1s5j_A 415 EISTWVKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVI--DPPAGIFFN-ITVLDFASLYPSIIRTW 491 (847)
T ss_dssp CHHHHHHHHHHHHHHHHTBCCCCHHHHHHTTCC--------------CCCC--CCCSEEEEE-EEEEEETTHHHHHHHHT
T ss_pred chhhhhHHHHHHHHHhcCcccCCchhhhhhcccccchhccccccccCCccc--CCCCCcccc-eeEeehhhhchHHHHHc
Confidence 346778999999999999999997421 0 12579999999 999999987 99999999999999999
Q ss_pred ccCccccccccCCCCCCCeeeeeecccccccCCCCCCCcceeeeccCCcccCCcccccchhhHHHHH--HHh----c---
Q psy5925 132 NYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFI--RKQ----L--- 202 (696)
Q Consensus 132 ~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l--~r~----~--- 202 (696)
||||+|+++.. ....+ ... ...| +. . +++. ..+.++.+.+++.++ |++ +
T Consensus 492 Nl~~~T~~~~~--~~~~~-~~~--------~~~~-~~--~-~~~~-------~~~~g~~p~~l~~l~~~R~~~kk~~~k~ 549 (847)
T 1s5j_A 492 NLSYETVDIQQ--CKKPY-EVK--------DETG-EV--L-HIVC-------MDRPGITAVITGLLRDFRVKIYKKKAKN 549 (847)
T ss_dssp TCCTTTBSCSC--CSSCC-EEC--------CSSS-CC--C-EEBC-------CSSCCHHHHHHHHHHHHHHHTHHHHHTC
T ss_pred CCCcceecccc--ccccc-ccc--------ccCC-CC--c-eeEe-------ccCCcccHHHHHHHHHHHHHHHHHHHhc
Confidence 99999998631 11100 000 1112 21 2 2443 135677888888887 321 1
Q ss_pred --CCc-ccccccccc--ccCCCCCCccccc
Q psy5925 203 --ETP-KRRICDSYA--IDAMTPDTTGDYQ 227 (696)
Q Consensus 203 --~~p-~~~~~~~~~--I~~~t~~~~~gfk 227 (696)
.+| ...+.+..| ++- +.++.||+.
T Consensus 550 ~~~~~~~~~~~d~~Q~AlKi-~~NS~YG~~ 578 (847)
T 1s5j_A 550 PNNSEEQKLLYDVVQRAMKV-FINATYGVF 578 (847)
T ss_dssp TTSCHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHH-Hhhcccccc
Confidence 245 445555555 443 556788876
No 15
>1y97_A Three prime repair exonuclease 2; TREX2, hydrolase; 2.50A {Homo sapiens} SCOP: c.55.3.5
Probab=98.12 E-value=3.6e-05 Score=77.80 Aligned_cols=118 Identities=10% Similarity=0.046 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhC-CCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehHH
Q psy5925 357 ELFSIFIENVRQWD-PDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWR 435 (696)
Q Consensus 357 eLL~~f~~~I~~~D-PDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~ 435 (696)
++...|.+++.... +++++|||+..||+++|...+..+|++.. ....++|++.
T Consensus 98 ~v~~~l~~fl~~~~~~~~lVahN~~~FD~~fL~~~~~~~g~~~~--------------------------~~~~~iDt~~ 151 (238)
T 1y97_A 98 AVVRTLQAFLSRQAGPICLVAHNGFDYDFPLLCAELRRLGARLP--------------------------RDTVCLDTLP 151 (238)
T ss_dssp HHHHHHHHHHTTSCSSEEEEETTTTTTHHHHHHHHHHHHTCCCC--------------------------TTCEEEEHHH
T ss_pred HHHHHHHHHHHhCCCCCEEEecCchhhhHHHHHHHHHHcCCCCC--------------------------CCCEEEEHHH
Confidence 45666667776554 48999999989999999999988876432 0124789888
Q ss_pred HHhhhc----------CCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy5925 436 LLRHEV----------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIG 505 (696)
Q Consensus 436 ~~r~~~----------kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl~ii~ 505 (696)
+.+..+ .+.+|+|++++++++|..... .+.++.||..+++|+.++ ..
T Consensus 152 l~~~~~~~~~p~~~~p~~~~~~L~~l~~~~~gi~~~~---------------------~H~Al~Da~~ta~l~~~l--~~ 208 (238)
T 1y97_A 152 ALRGLDRAHSHGTRARGRQGYSLGSLFHRYFRAEPSA---------------------AHSAEGDVHTLLLIFLHR--AA 208 (238)
T ss_dssp HHHHHHHHC----------CCSHHHHHHHHHSSCCC------------------------CHHHHHHHHHHHHHHT--HH
T ss_pred HHHHHHhccCccccCCCCCCCCHHHHHHHHhCCCCcc---------------------CccHHHHHHHHHHHHHHH--HH
Confidence 777654 458999999999766654211 133578999999999886 56
Q ss_pred hhhhHHHHhCCchhhhhc
Q psy5925 506 RTSEMARLFGIQFYEVLS 523 (696)
Q Consensus 506 ~~~ela~l~gi~~~~vl~ 523 (696)
...+++.-.+++|.++-.
T Consensus 209 ~~~~~~~~~~~~~~~i~~ 226 (238)
T 1y97_A 209 ELLAWADEQARGWAHIEP 226 (238)
T ss_dssp HHHHHHHHHCEEGGGCCC
T ss_pred HHHHHHHhcCCchhhccc
Confidence 777777778888887643
No 16
>3mxm_B Three prime repair exonuclease 1; RNAse H-like fold, polyproline type II helix, hydrolase-DNA; HET: DNA; 1.75A {Mus musculus} SCOP: c.55.3.5 PDB: 3mxj_B 2ioc_B 3mxi_B* 3b6o_A* 2o4g_A* 3b6p_A* 2o4i_A 2oa8_A
Probab=97.98 E-value=3.3e-05 Score=78.63 Aligned_cols=118 Identities=10% Similarity=0.043 Sum_probs=83.3
Q ss_pred HHHHHHHHHHHHHh-CCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehH
Q psy5925 356 KELFSIFIENVRQW-DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLW 434 (696)
Q Consensus 356 ~eLL~~f~~~I~~~-DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~ 434 (696)
.+.+..|.+++... .|++++|||...||+++|..-++++|++.. ..+..++|++
T Consensus 102 ~ev~~~~~~fl~~~~~~~~lVaHNav~FD~~fL~~~~~r~g~~~~-------------------------~~~~~~iDtl 156 (242)
T 3mxm_B 102 DNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP-------------------------LDGTFCVDSI 156 (242)
T ss_dssp HHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT-------------------------TTTCEEEEHH
T ss_pred HHHHHHHHHHHhcCCCCCEEEEcCChHhhHHHHHHHHHHcCCCCC-------------------------ccCCeEeehH
Confidence 47889999999874 347999999878999999999988886532 0113578998
Q ss_pred HHHhhhc---------CCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy5925 435 RLLRHEV---------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIG 505 (696)
Q Consensus 435 ~~~r~~~---------kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl~ii~ 505 (696)
..+|... .+.+|+|+++++.++|...... +-++.||..+.+|+.++ ..
T Consensus 157 ~l~r~l~~~~~p~~~~~~~~~~L~~l~~~~~gi~~~~~---------------------H~Al~Da~ata~l~~~~--~~ 213 (242)
T 3mxm_B 157 AALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDS---------------------HTAEGDDLTLLSICQWK--PQ 213 (242)
T ss_dssp HHHHHHHHHHCC------CCCSHHHHHHHHHSSCCSST---------------------TSHHHHHHHHHHHHTSS--HH
T ss_pred HHHHHHHhhcCccccCCCCCcCHHHHHHHHhCCCCCCC---------------------cChHHHHHHHHHHHHHH--HH
Confidence 8877532 3789999999988777653211 12477889999888765 34
Q ss_pred hhhhHHHHhCCchhhh
Q psy5925 506 RTSEMARLFGIQFYEV 521 (696)
Q Consensus 506 ~~~ela~l~gi~~~~v 521 (696)
...+.+.-.+.+|..+
T Consensus 214 ~~~~~~~~~~~~~~~~ 229 (242)
T 3mxm_B 214 ALLQWVDEHARPFSTV 229 (242)
T ss_dssp HHHHHHHHHCEEGGGC
T ss_pred HHHHHHHhcCCchhhc
Confidence 4555555555666653
No 17
>2p1j_A POLIII, DNA polymerase III POLC-type; structural genomics, exonuclease, PSI-2, protein structure initiative; HET: DNA; 2.50A {Thermotoga maritima MSB8}
Probab=97.97 E-value=6.4e-05 Score=73.15 Aligned_cols=163 Identities=13% Similarity=0.052 Sum_probs=103.1
Q ss_pred CCceEEEEEEEeecCCCCCCCCCCCcEEEEEEEeecCCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhhhhhh
Q psy5925 243 YYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFI 322 (696)
Q Consensus 243 ~~LtilsleIe~~sr~~~~Pdp~~D~I~~I~~~~~~~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~ 322 (696)
.+.+.+.+|+||.. -+|..|+|+.|++...++.... ..--.+++|.. ++. ..+
T Consensus 10 ~~~~~v~iD~ETTG-----l~~~~~~IieIg~v~~~~g~i~--~~f~~lv~P~~--------~i~------------~~~ 62 (186)
T 2p1j_A 10 GDATFVVLDFETTG-----LDPQVDEIIEIGAVKIQGGQIV--DEYHTLIKPSR--------EIS------------RKS 62 (186)
T ss_dssp ---CEEEEEEEESC-----SCTTTCCEEEEEEEEEETTEEE--EEEEEECBCSS--------CCC------------HHH
T ss_pred cCCCEEEEEEECCC-----CCCCCCeEEEEEEEEEECCEEE--EEEEEEECcCC--------CCC------------HHH
Confidence 35678999999982 2566789999998765442100 01123455432 111 011
Q ss_pred hccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccc
Q psy5925 323 ENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQEL 402 (696)
Q Consensus 323 ~~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~l 402 (696)
..++...+ .++ ....+..+.+..|.+++. .++++|||+ .||+++|...++.+|++.+.
T Consensus 63 ~~i~GIt~-----~~l-----------~~~~~~~~v~~~~~~~l~---~~~lv~hn~-~fD~~~L~~~~~~~g~~~~~-- 120 (186)
T 2p1j_A 63 SEITGITQ-----EML-----------ENKRSIEEVLPEFLGFLE---DSIIVAHNA-NFDYRFLRLWIKKVMGLDWE-- 120 (186)
T ss_dssp HHHHCCCH-----HHH-----------TTCCBHHHHHHHHHHHSS---SCEEEETTH-HHHHHHHHHHHHHHHCCCCC--
T ss_pred hhhcCCCH-----HHH-----------hcCCCHHHHHHHHHHHHC---CCEEEEECc-HHHHHHHHHHHHHcCCCCCC--
Confidence 11222211 111 122567888999988875 479999999 89999999998888775320
Q ss_pred cccccccccccCCCccccceeeecccEEEehHHHHhhhcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHH
Q psy5925 403 SRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWM 482 (696)
Q Consensus 403 gR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~ 482 (696)
...+|++...+..+...+++|++++++ +|.....
T Consensus 121 -------------------------~~~iDt~~l~~~~~~~~~~~L~~l~~~-~gi~~~~-------------------- 154 (186)
T 2p1j_A 121 -------------------------RPYIDTLALAKSLLKLRSYSLDSVVEK-LGLGPFR-------------------- 154 (186)
T ss_dssp -------------------------CCEEEHHHHHHHHTCCSCCSHHHHHHH-TTCCSTT--------------------
T ss_pred -------------------------CCEEeHHHHHHHHhhcCCCCHHHHHHH-cCCCCCC--------------------
Confidence 125789888887667889999999986 4543210
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy5925 483 TVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 483 ~i~Y~l~D~~l~~~L~~kl 501 (696)
...++.||..+.+|+.++
T Consensus 155 -~H~Al~Da~~t~~l~~~l 172 (186)
T 2p1j_A 155 -HHRALDDARVTAQVFLRF 172 (186)
T ss_dssp -CCHHHHHHHHHHHHHHHH
T ss_pred -CcCHHHHHHHHHHHHHHH
Confidence 124578999999998876
No 18
>3u3y_B Three prime repair exonuclease 1; RNAse H fold, 3' exonuclease, homodimer, hydrolase-DNA compl; HET: BU1; 2.28A {Mus musculus} PDB: 3u6f_B*
Probab=97.90 E-value=0.00011 Score=77.38 Aligned_cols=118 Identities=11% Similarity=0.061 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHhC-CCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehH
Q psy5925 356 KELFSIFIENVRQWD-PDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLW 434 (696)
Q Consensus 356 ~eLL~~f~~~I~~~D-PDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~ 434 (696)
.+++..|.+++...+ |.+++|||+..||+++|..-++++|++.. ..+..++|++
T Consensus 102 ~ev~~~l~~fL~~~~~~~vLVAHNga~FD~~FL~~el~r~Gl~~~-------------------------~~~~~~iDTL 156 (314)
T 3u3y_B 102 DNLAILLRAFLQRQPQPCCLVAHNGDRYDFPLLQTELARLSTPSP-------------------------LDGTFCVDSI 156 (314)
T ss_dssp HHHHHHHHHHHHTSCSSEEEEETTTTTTHHHHHHHHHHTSSSCCT-------------------------TTTCEEEEHH
T ss_pred HHHHHHHHHHHhcCCCCcEEEEeCcHHHHHHHHHHHHHHcCCCCC-------------------------CCCceEEeHH
Confidence 578889999998753 47999999879999999999988876532 0123578988
Q ss_pred HHHhhh----c-----CCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHhcccc
Q psy5925 435 RLLRHE----V-----NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIG 505 (696)
Q Consensus 435 ~~~r~~----~-----kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl~ii~ 505 (696)
..+++. + ...+|+|++++++++|...... +-++.||..+.+|+.++ ..
T Consensus 157 ~l~r~L~r~~~P~~~~~~~~~~L~~L~~~l~gi~~~~a---------------------HrAl~DA~ata~lf~~l--~~ 213 (314)
T 3u3y_B 157 AALKALEQASSPSGNGSRKSYSLGSIYTRLYWQAPTDS---------------------HTAEGHVLTLLSICQWK--PQ 213 (314)
T ss_dssp HHHHHHHTTC-------CCCCSHHHHHHHHHSSCCSCS---------------------SSHHHHHHHHHHHHHSS--HH
T ss_pred HHHHHHHHHhCccccccCCCCCHHHHHHHhcCCCCCCC---------------------CCHHHHHHHHHHHHHHH--HH
Confidence 866632 1 2489999999999777653221 11467888888888765 23
Q ss_pred hhhhHHHHhCCchhhh
Q psy5925 506 RTSEMARLFGIQFYEV 521 (696)
Q Consensus 506 ~~~ela~l~gi~~~~v 521 (696)
...+...--..+|+++
T Consensus 214 ~~l~~~~~~~~p~~~i 229 (314)
T 3u3y_B 214 ALLQWVDEHARPFSTV 229 (314)
T ss_dssp HHHHHHHHHCEEGGGS
T ss_pred HHHHHHhhcCCCHHHc
Confidence 3333333334445443
No 19
>1zbh_A 3'-5' exonuclease ERI1; histone mRNA 3'-END-specific recognition, structures of 3'- exonuclease and ITS RNA complex, hydrolase/RNA complex; HET: AMP; 3.00A {Homo sapiens}
Probab=97.58 E-value=0.001 Score=69.71 Aligned_cols=176 Identities=10% Similarity=0.036 Sum_probs=107.8
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCcEEEEEEEeecCCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhhhhhhh
Q psy5925 244 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIE 323 (696)
Q Consensus 244 ~LtilsleIe~~sr~~~~Pdp~~D~I~~I~~~~~~~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~ 323 (696)
.-..+.+|+||..-+ ..++|..|+|+.|+++..+.........--.+|++... .++. ..+.
T Consensus 77 ~~~~vviD~ETTGl~-~~~~~~~~~IIeIgaV~v~~~~g~i~~~f~~lV~P~~~------~~i~------------~~~~ 137 (299)
T 1zbh_A 77 YDYICIIDFEATCEE-GNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEIN------TQLS------------DFCI 137 (299)
T ss_dssp CSEEEEECCEECCCT-TCCTTCCCCEEEEEEEEEETTTCCEEEEEEEEBCCSSS------CSCC------------HHHH
T ss_pred CceEEEEEeecccCC-CCCCCCCCceEEEEEEEEECCCCeEeeeeeeeecCCCC------CCCC------------HHHH
Confidence 346788999998432 12357889999999887654211100111345555321 0111 1111
Q ss_pred ccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHh----CCCEEEecccccccHH-HHHHHHHHcCCCC
Q psy5925 324 NVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQW----DPDILIGYEIETLSWG-YLLERGYVLGLNL 398 (696)
Q Consensus 324 ~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~----DPDIIvGyNi~~fDl~-YL~~Ra~~lgi~~ 398 (696)
.++...+ .+ +....+..+.+..|.+++... ..++++|||+ .||++ +|..-++.+|++.
T Consensus 138 ~ihGIt~-----e~-----------v~~ap~~~evl~~f~~~l~~~~~~~~~~~lVahn~-~fD~~~fL~~~~~~~g~~~ 200 (299)
T 1zbh_A 138 SLTGITQ-----DQ-----------VDRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKY 200 (299)
T ss_dssp HHHCCCH-----HH-----------HHTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCC
T ss_pred HHhCCCH-----HH-----------HhcCCCHHHHHHHHHHHHhhcccCCCCcEEEEEeC-HHHHHHHHHHHHHHcCCCC
Confidence 1222211 11 112357889999999999886 2369999999 79999 9988888777653
Q ss_pred cccccccccccccccCCCccccceeeecccEEEehHHHHhhhcCCCC--CCHHHHHHHHcCCCcCCCChhhHHHHHhcCC
Q psy5925 399 NQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS--YTFENIMYHVLHERIPLHSWKLLTCWWEHRT 476 (696)
Q Consensus 399 ~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~~kl~s--ysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~ 476 (696)
.. + ..-++|+...++..+...+ ++|++++++ +|..... .
T Consensus 201 p~-~------------------------~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~-~gi~~~g------------~- 241 (299)
T 1zbh_A 201 PP-F------------------------AKKWINIRKSYGNFYKVPRSQTKLTIMLEK-LGMDYDG------------R- 241 (299)
T ss_dssp CG-G------------------------GSEEEEHHHHHHHHHTCCGGGCSHHHHHHH-TTCCCCS------------C-
T ss_pred Cc-c------------------------cchHHHHHHHHHHHhCCCCCCccHHHHHHH-cCCCCCC------------C-
Confidence 20 0 0236788777776655555 999999987 4543211 0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 477 HLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 477 ~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
.+-++.||..+++|+.++
T Consensus 242 -------~H~Al~DA~ata~l~~~l 259 (299)
T 1zbh_A 242 -------PNCGLDDSKNIARIAVRM 259 (299)
T ss_dssp -------TTCHHHHHHHHHHHHHHH
T ss_pred -------CCChHHHHHHHHHHHHHH
Confidence 012478999999998876
No 20
>3v9w_A Ribonuclease T; DEDD nucleases family, EXO-nucleases, hydrolase-DNA complex; HET: DNA; 1.70A {Escherichia coli} PDB: 3ngy_A 3v9u_A* 3ngz_A* 3va3_A* 3v9z_A* 3nh0_A 3nh2_A 3nh1_A* 3v9s_A* 3v9x_A* 3va0_A* 2is3_A
Probab=97.51 E-value=0.0012 Score=66.44 Aligned_cols=102 Identities=9% Similarity=0.057 Sum_probs=73.5
Q ss_pred CCHHHHHHHHHHHHHHh------CCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeec
Q psy5925 353 SNEKELFSIFIENVRQW------DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMP 426 (696)
Q Consensus 353 ~sE~eLL~~f~~~I~~~------DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~ 426 (696)
.+..+.+..|.+++.++ ...+++|||+ .||+++|...++.+|++... + .
T Consensus 110 ~~~~~vl~~~~~~l~~~~~~~~~~~~~lVahN~-~fD~~~L~~~~~~~g~~~~p-~-----------------------~ 164 (235)
T 3v9w_A 110 VSGYEALHEIFKVVRKGIKASGCNRAIMVAHNA-NFDHSFMMAAAERASLKRNP-F-----------------------H 164 (235)
T ss_dssp BCHHHHHHHHHHHHHHHHTTTTCCEEEEEETTT-HHHHHHHHHHHHHTTCCCCC-E-----------------------E
T ss_pred CCHHHHHHHHHHHHHHHhhhccCCCcEEEEeCh-HHHHHHHHHHHHHcCCCCCC-C-----------------------C
Confidence 56788999999999764 4579999998 89999998888888875210 0 0
Q ss_pred ccEEEehHHHHhhhcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 427 GRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 427 GRl~lDl~~~~r~~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
....+|++...+..+ ++++|+++++.+ |..... .-..+++.||..+.+|+.++
T Consensus 165 ~~~~~Dt~~la~~~~--p~~~L~~l~~~~-gi~~~~-------------------~~~H~Al~DA~~ta~l~~~l 217 (235)
T 3v9w_A 165 PFATFDTAALAGLAL--GQTVLSKACQTA-GMDFDS-------------------TQAHSALYDTERTAVLFCEI 217 (235)
T ss_dssp EEEEEEHHHHHHHHH--SCCSHHHHHHHH-TCCCCT-------------------TTTTCHHHHHHHHHHHHHHH
T ss_pred CCcEEEhHHHHHHHh--CCCCHHHHHHHc-CCCCCC-------------------CCCcChHHHHHHHHHHHHHH
Confidence 013689999888766 468999999876 321100 01235678999999998876
No 21
>1w0h_A 3'-5' exonuclease ERI1; nuclease domain, hydrolase; HET: AMP; 1.59A {Homo sapiens} SCOP: c.55.3.5
Probab=97.47 E-value=0.002 Score=63.12 Aligned_cols=174 Identities=9% Similarity=0.022 Sum_probs=105.7
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCcEEEEEEEeec--CCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhhhhh
Q psy5925 244 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYT--CPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTF 321 (696)
Q Consensus 244 ~LtilsleIe~~sr~~~~Pdp~~D~I~~I~~~~~~--~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~~~ 321 (696)
.-+.+.+|+||..-+. .+.+..|+|+.|+++..+ +... ...--.+++|... .++. ..
T Consensus 9 ~~~~vviD~ETTGl~~-~~~~~~~~Iieigav~~~~~~g~i--~~~f~~lv~P~~~------~~i~------------~~ 67 (204)
T 1w0h_A 9 YDYICIIDFEATCEEG-NPPEFVHEIIEFPVVLLNTHTLEI--EDTFQQYVRPEIN------TQLS------------DF 67 (204)
T ss_dssp SSEEEECCCEECCCTT-CCTTSCCCEEEEEEEEEETTTCSE--EEEEEEEBCCSSS------CSCC------------HH
T ss_pred cCEEEEEEEecCCcCC-CCCCCCCcEEEEEEEEEECCCCEE--eeeeeeEECCCCC------CccC------------HH
Confidence 3467889999984321 112467999999988764 2211 0112345555321 0111 11
Q ss_pred hhccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHhC----CCEEEecccccccHH-HHHHHHHHcCC
Q psy5925 322 IENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWD----PDILIGYEIETLSWG-YLLERGYVLGL 396 (696)
Q Consensus 322 ~~~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~D----PDIIvGyNi~~fDl~-YL~~Ra~~lgi 396 (696)
+..++...+ .+ +....+..+.+..|.+++.... +.+++|||+ .||+. +|..-++.+|+
T Consensus 68 ~~~i~GIt~-----~~-----------l~~~~~~~~v~~~~~~~l~~~~~~~~~~~lv~hn~-~fD~~~~L~~~~~~~~~ 130 (204)
T 1w0h_A 68 CISLTGITQ-----DQ-----------VDRADTFPQVLKKVIDWMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRL 130 (204)
T ss_dssp HHHHHCCCH-----HH-----------HHTSBCHHHHHHHHHHHHHHTTBTTTBCEEEEESS-TTTTHHHHHHHHHHHTC
T ss_pred HHHHhCCCH-----HH-----------HhCCCCHHHHHHHHHHHHHhcCCCCCCcEEEEEEC-cchHHHHHHHHHHHhCC
Confidence 111222211 11 1123578899999999999864 458999999 79997 99888888877
Q ss_pred CCcccccccccccccccCCCccccceeeecccEEEehHHHHhhhcCC--CCCCHHHHHHHHcCCCcCCCChhhHHHHHhc
Q psy5925 397 NLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNL--QSYTFENIMYHVLHERIPLHSWKLLTCWWEH 474 (696)
Q Consensus 397 ~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~~kl--~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~ 474 (696)
+.... ..-.+|+...+++.+.. .+++|+++++++ |.....
T Consensus 131 ~~p~~-------------------------~~~~~dt~~l~~~~~~~~~~~~~L~~l~~~~-gi~~~~------------ 172 (204)
T 1w0h_A 131 KYPPF-------------------------AKKWINIRKSYGNFYKVPRSQTKLTIMLEKL-GMDYDG------------ 172 (204)
T ss_dssp CCCGG-------------------------GSEEEEHHHHHHHHHTCCGGGCSHHHHHHHT-TCCCCS------------
T ss_pred CCccc-------------------------ccceEEHHHHHHHHhCCCCccchHHHHHHHc-CCCCCC------------
Confidence 53200 02478998888876653 469999999874 543211
Q ss_pred CCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 475 RTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 475 ~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
. .+-++.||..+.+|+.++
T Consensus 173 ~--------~H~Al~Da~~ta~l~~~l 191 (204)
T 1w0h_A 173 R--------PHCGLDDSKNIARIAVRM 191 (204)
T ss_dssp C--------TTCHHHHHHHHHHHHHHH
T ss_pred C--------ccCcHHHHHHHHHHHHHH
Confidence 0 012467888888888776
No 22
>2f96_A Ribonuclease T; RNAse, RNT, RNAse T, tRNA hydrolase, SAD, PS protein structure initiative, midwest center for structural genomics; 2.09A {Pseudomonas aeruginosa} SCOP: c.55.3.5
Probab=97.45 E-value=0.0023 Score=63.91 Aligned_cols=103 Identities=11% Similarity=0.076 Sum_probs=72.6
Q ss_pred eCCHHHHHHHHHHHHHHh------CCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeee
Q psy5925 352 VSNEKELFSIFIENVRQW------DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQM 425 (696)
Q Consensus 352 ~~sE~eLL~~f~~~I~~~------DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i 425 (696)
..+..+.+..|.+++.++ +..+++|||+ .||+++|...++.+|+... + +
T Consensus 101 ~~~~~~v~~~~~~~l~~~~~~~~~~~~~lV~hn~-~FD~~fL~~~~~~~g~~~~------p------------------~ 155 (224)
T 2f96_A 101 AVQEEAALTEIFRGIRKALKANGCKRAILVGHNS-SFDLGFLNAAVARTGIKRN------P------------------F 155 (224)
T ss_dssp CBCHHHHHHHHHHHHHHHHHHTTCSEEEEEETTH-HHHHHHHHHHHHHHTCCCC------C------------------E
T ss_pred CCCHHHHHHHHHHHHHHHhhhcccCCCEEEEeCh-hhhHHHHHHHHHHcCCCcC------C------------------c
Confidence 356788899999988764 3579999999 8999999998888886521 0 0
Q ss_pred cccEEEehHHHHhhhcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 426 PGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 426 ~GRl~lDl~~~~r~~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
.....+|++.+.+..+ .+++|+++++++ |..... .. .+-++.||..+.+|+.++
T Consensus 156 ~~~~~iDt~~l~~~~~--~~~~L~~l~~~~-gi~~~~-----------~~--------~H~Al~Da~~ta~l~~~l 209 (224)
T 2f96_A 156 HPFSSFDTATLAGLAY--GQTVLAKACQAA-GMEFDN-----------RE--------AHSARYDTEKTAELFCGI 209 (224)
T ss_dssp EEEEEEEHHHHHHHHH--SCCSHHHHHHHT-TCCCCT-----------TS--------CCCHHHHHHHHHHHHHHH
T ss_pred cccceeeHHHHHHHHc--CCCCHHHHHHHc-CCCcCC-----------CC--------CCChHHHHHHHHHHHHHH
Confidence 0024789998888765 468999999874 543210 00 112467888888888776
No 23
>2gui_A DNA polymerase III epsilon subunit; DNA polymerase proofreading domain, transferase; HET: DNA U5P; 1.60A {Escherichia coli} SCOP: c.55.3.5 PDB: 1j54_A* 1j53_A* 2ido_A* 2xy8_A*
Probab=97.40 E-value=0.0032 Score=61.20 Aligned_cols=102 Identities=9% Similarity=0.054 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEe
Q psy5925 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVIN 432 (696)
Q Consensus 353 ~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lD 432 (696)
.+..+.+..|.+++.. .+++|||+ .||+++|...++.+|++... +. .....+|
T Consensus 80 ~~~~~v~~~~~~~l~~---~~lv~hn~-~fD~~~L~~~~~~~g~~~p~-~~----------------------~~~~~iD 132 (194)
T 2gui_A 80 PTFAEVADEFMDYIRG---AELVIHNA-AFDIGFMDYEFSLLKRDIPK-TN----------------------TFCKVTD 132 (194)
T ss_dssp CCHHHHHHHHHHHHTT---SEEEETTH-HHHHHHHHHHHHHTCSCCCC-GG----------------------GTSEEEE
T ss_pred CCHHHHHHHHHHHHCC---CeEEEEch-HHhHHHHHHHHHHcCCCCcc-cc----------------------ccCceee
Confidence 4667899999998864 58999999 89999999999888875310 00 0124789
Q ss_pred hHHHHhhhcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 433 LWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 433 l~~~~r~~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
++.+.++.+.-.+++|+++++++ |..... .. .+-++.||..+.+|+.++
T Consensus 133 t~~l~~~~~p~~~~~L~~l~~~~-gi~~~~-----------~~--------~H~Al~Da~~ta~l~~~l 181 (194)
T 2gui_A 133 SLAVARKMFPGKRNSLDALCARY-EIDNSK-----------RT--------LHGALLDAQILAEVYLAM 181 (194)
T ss_dssp HHHHHHHHSTTSCCSHHHHHHHT-TCCCTT-----------CS--------SCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCCCHHHHHHHc-CcCCCC-----------CC--------CCChHHHHHHHHHHHHHH
Confidence 98888876654578999999874 543211 00 112477899999988776
No 24
>1zbu_A ERI-1 homolog, 3'-5' exonuclease ERI1; hydrolase; HET: AMP; 3.00A {Homo sapiens}
Probab=97.17 E-value=0.0017 Score=69.46 Aligned_cols=176 Identities=10% Similarity=0.035 Sum_probs=105.6
Q ss_pred CceEEEEEEEeecCCCCCCCCCCCcEEEEEEEeecCCCCCCceEEEEEEcCCCCCcccccCccccccccchhhhhhhhhh
Q psy5925 244 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIE 323 (696)
Q Consensus 244 ~LtilsleIe~~sr~~~~Pdp~~D~I~~I~~~~~~~~~~~~~~~g~ilv~~~~~~~~~~~~p~~~~~~~~~~e~~~~~~~ 323 (696)
.-..+.||+||..-+ ..++|..|+|+.|+++..+.........--.+|++... .++. ..+.
T Consensus 127 ~~~~vviD~ETTGl~-~~~~~~~deIIEIgaV~vd~~~g~i~~~f~~lVkP~~~------~~I~------------~~~t 187 (349)
T 1zbu_A 127 YDYICIIDFEATCEE-GNPPEFVHEIIEFPVVLLNTHTLEIEDTFQQYVRPEIN------TQLS------------DFCI 187 (349)
T ss_dssp CSEEEECCCEECCCT-TCCTTCCCCEEECCEEEEETTTTEEEEEECCBEECSSS------CSCC------------HHHH
T ss_pred CCeEEEEEEecCCCC-CcCCCCCCeEEEEEEEEEECCCceEeEEEEEEECCCCC------CCCC------------HHHH
Confidence 346788999998432 12467889999999887653210100001124444320 0111 1111
Q ss_pred ccccCCCcccccccccccccCcceEEEEeCCHHHHHHHHHHHHHHhC----CCEEEecccccccHH-HHHHHHHHcCCCC
Q psy5925 324 NVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWD----PDILIGYEIETLSWG-YLLERGYVLGLNL 398 (696)
Q Consensus 324 ~~~~~~p~~~~g~ei~~~~~~~~~~V~~~~sE~eLL~~f~~~I~~~D----PDIIvGyNi~~fDl~-YL~~Ra~~lgi~~ 398 (696)
.++...+ .++ ....+..+.+..|.+++...+ .++++|||+ .||++ +|..-++.+|++.
T Consensus 188 ~ihGIT~-----e~v-----------~~ap~~~eVl~~f~~~l~~~~~~~~~~~lVaHNa-~FD~~~fL~~~~~~~g~~~ 250 (349)
T 1zbu_A 188 SLTGITQ-----DQV-----------DRADTFPQVLKKVIDLMKLKELGTKYKYSLLTDG-SWDMSKFLNIQCQLSRLKY 250 (349)
T ss_dssp HHHCCCH-----HHH-----------HTSEEHHHHHHHHHHHHHHTTBTTTBCEEEEESS-SHHHHTHHHHHHHHTTBCC
T ss_pred HHhCCCH-----HHH-----------hCCCCHHHHHHHHHHHHhcccccCCCcEEEEECc-HhhHHHHHHHHHHHhCCCC
Confidence 1222211 111 122457789999999998862 269999999 69999 9988888777653
Q ss_pred cccccccccccccccCCCccccceeeecccEEEehHHHHhhhcCCCC--CCHHHHHHHHcCCCcCCCChhhHHHHHhcCC
Q psy5925 399 NQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQS--YTFENIMYHVLHERIPLHSWKLLTCWWEHRT 476 (696)
Q Consensus 399 ~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~~kl~s--ysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~ 476 (696)
.. + ...++|+..+++..+...+ ++|+++++++ |..... .
T Consensus 251 p~------------------~-------~~~~iDt~~l~~~~~~~~~~~~~L~~l~~~~-gi~~~g------------~- 291 (349)
T 1zbu_A 251 PP------------------F-------AKKWINIRKSYGNFYKVPRSQTKLTIMLEKL-GMDYDG------------R- 291 (349)
T ss_dssp CG------------------G-------GSEEEEHHHHHHHHHTCCGGGGSHHHHHHHT-TCCCCS------------C-
T ss_pred cc------------------c-------cchHHHHHHHHHHHhcCCCCCCCHHHHHHHc-CCCCCC------------C-
Confidence 20 0 0236788877776665555 9999999874 433211 0
Q ss_pred cccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 477 HLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 477 ~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
.+-++.||..+++|+.++
T Consensus 292 -------~HrAl~DA~ata~ll~~l 309 (349)
T 1zbu_A 292 -------PHCGLDDSKNIARIAVRM 309 (349)
T ss_dssp -------TTCHHHHHHHHHHHHHHH
T ss_pred -------CCCHHHHHHHHHHHHHHH
Confidence 012478999999998876
No 25
>2qxf_A Exodeoxyribonuclease I; alpha-beta domain, DNAQ superfamily, SH3-like domain, produc structure, DNA damage, DNA repair, exonuclease; HET: TMP; 1.50A {Escherichia coli} SCOP: c.55.3.5 PDB: 1fxx_A* 3c94_A 3c95_A 3hl8_A* 3hp9_A*
Probab=96.77 E-value=0.022 Score=63.47 Aligned_cols=104 Identities=12% Similarity=0.035 Sum_probs=69.8
Q ss_pred CHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEeh
Q psy5925 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINL 433 (696)
Q Consensus 354 sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl 433 (696)
.|.+.+..|.+++.+ ...+++|||+-.||+++|..-+.++|++.. .+ .| ..|.-.+|+
T Consensus 80 ~~~evl~~f~~~l~~-~~~~lVaHNs~~FD~~fL~~~~~r~g~~~~---~~-----~w-------------~~~~~~iDt 137 (482)
T 2qxf_A 80 NEAAFAARIHSLFTV-PKTCILGYNNVRFDDEVTRNIFYRNFYDPY---AW-----SW-------------QHDNSRWDL 137 (482)
T ss_dssp CHHHHHHHHHHHHTS-TTEEEEESSTTTTHHHHHHHHHHHTTSCSS---GG-----GT-------------GGGCEEEEH
T ss_pred CHHHHHHHHHHHHcC-CCCEEEEECCHHHHHHHHHHHHHHhCCCcc---cc-----cc-------------ccCCceeeH
Confidence 578899999999975 346999999778999999998888877632 10 01 012335677
Q ss_pred HHHHhhhc--------------CCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHH
Q psy5925 434 WRLLRHEV--------------NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE 499 (696)
Q Consensus 434 ~~~~r~~~--------------kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~ 499 (696)
..+++..+ ...+|+|+++++++ |..... .+-++.||..+++|+.
T Consensus 138 l~l~r~~~~~~~~~~~wP~~~~~~~s~kL~~L~~~~-Gi~~~~---------------------aHrAL~DA~aTa~l~~ 195 (482)
T 2qxf_A 138 LDVMRACYALRPEGINWPENDDGLPSFRLEHLTKAN-GIEHSN---------------------AHDAMADVYATIAMAK 195 (482)
T ss_dssp HHHHHHHHHHCCTTSCCCBCTTSSBCCCHHHHHHHT-TCCCC------------------------CTTHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccCcccccCCCCCCHHHHHHHc-CCCCCC---------------------CCCHHHHHHHHHHHHH
Confidence 77665433 45699999998865 432110 0123668888888877
Q ss_pred Hh
Q psy5925 500 QL 501 (696)
Q Consensus 500 kl 501 (696)
++
T Consensus 196 ~l 197 (482)
T 2qxf_A 196 LV 197 (482)
T ss_dssp HH
T ss_pred HH
Confidence 65
No 26
>2xri_A ERI1 exoribonuclease 3; hydrolase, metal binding; 2.15A {Homo sapiens}
Probab=96.29 E-value=0.047 Score=54.31 Aligned_cols=101 Identities=12% Similarity=0.055 Sum_probs=64.7
Q ss_pred eCCHHHHHHHHHHHHHHhCCCEEEecccc-------cccHHHHH-HHHHHcCCCCcccccccccccccccCCCcccccee
Q psy5925 352 VSNEKELFSIFIENVRQWDPDILIGYEIE-------TLSWGYLL-ERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQL 423 (696)
Q Consensus 352 ~~sE~eLL~~f~~~I~~~DPDIIvGyNi~-------~fDl~YL~-~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~ 423 (696)
..+..+.+..|.+++... +++|||.. .||+.+|+ .-++.+|++....
T Consensus 101 a~~~~~v~~~f~~~l~~~---~lv~hn~~~~~~t~g~fD~~fll~~~~~~~g~~~p~~---------------------- 155 (224)
T 2xri_A 101 QPSLQQVLERVDEWMAKE---GLLDPNVKSIFVTCGDWDLKVMLPGQCQYLGLPVADY---------------------- 155 (224)
T ss_dssp CCCHHHHHHHHHHHHHHT---TTTSTTSCEEEEESSSHHHHTHHHHHHHHHTCCCCGG----------------------
T ss_pred CCCHHHHHHHHHHHHhhc---ccccCCCceEEEEeChhhHHHHHHHHHHHhCCCCccc----------------------
Confidence 357889999999999874 57788875 89999855 5556677653200
Q ss_pred eecccEEEehHHHHhhhc-CCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 424 QMPGRIVINLWRLLRHEV-NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 424 ~i~GRl~lDl~~~~r~~~-kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
. .-.+|+...++... ..++++|+++++.+ |..... . ..-++.||..+++|+.++
T Consensus 156 --~-~~~iD~~~~~~~~~~~~p~~~L~~l~~~~-gi~~~~------------~--------~H~Al~DA~~ta~l~~~l 210 (224)
T 2xri_A 156 --F-KQWINLKKAYSFAMGCWPKNGLLDMNKGL-SLQHIG------------R--------PHSGIDDCKNIANIMKTL 210 (224)
T ss_dssp --G-SCEEEHHHHHHHHHTSCCTTTHHHHHHHT-TCCCCS------------C--------TTCHHHHHHHHHHHHHHH
T ss_pred --c-cceEeHHHHHHHHhccCCCCCHHHHHHHc-CCCCCC------------C--------CcChHHHHHHHHHHHHHH
Confidence 0 13678544332221 23569999999854 432210 0 012477999999998876
No 27
>3cg7_A CRN-4, cell death-related nuclease 4; hydrolase, apoptosis, 3'-5' exonuclease, deddh; 2.50A {Caenorhabditis elegans} PDB: 3cm5_A 3cm6_A
Probab=94.59 E-value=0.18 Score=52.74 Aligned_cols=101 Identities=9% Similarity=0.079 Sum_probs=66.9
Q ss_pred eCCHHHHHHHHHHHHHHhCCCEEEeccc-----ccccH-HHHHHHHHHcCCCCcccccccccccccccCCCccccceeee
Q psy5925 352 VSNEKELFSIFIENVRQWDPDILIGYEI-----ETLSW-GYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQM 425 (696)
Q Consensus 352 ~~sE~eLL~~f~~~I~~~DPDIIvGyNi-----~~fDl-~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i 425 (696)
..+..+.+..|.+++.... ++|||. -.||+ .+|..-++.+|++....+
T Consensus 92 ap~~~evl~~f~~~l~~~~---lvahn~~lv~~g~fD~~~fL~~~~~~~g~~~p~~~----------------------- 145 (308)
T 3cg7_A 92 ADTFDVVYEQFQQWLITLG---LEEGKFAFVCDSRQDLWRIAQYQMKLSNIQMPAFF----------------------- 145 (308)
T ss_dssp SCBHHHHHHHHHHHHHHHC---CCTTSEEEEESSSHHHHTHHHHHHHHTTCCCCGGG-----------------------
T ss_pred CCCHHHHHHHHHHHHHhCC---cCCcceEEeccCcccHHHHHHHHHHHcCCCCchhh-----------------------
Confidence 3567889999999999864 466665 26999 688777777776542000
Q ss_pred cccEEEehHHHHhhhcC---C----CCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHH
Q psy5925 426 PGRIVINLWRLLRHEVN---L----QSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLI 498 (696)
Q Consensus 426 ~GRl~lDl~~~~r~~~k---l----~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~ 498 (696)
.-.+|+...+++.+. . .+++|++++.++ |..... . .+-++.||..+.+|+
T Consensus 146 --~~~iDt~~l~~~~~~~~~~~~~~~~~~L~~l~~~~-gi~~~~------------~--------~HrAl~DA~ata~l~ 202 (308)
T 3cg7_A 146 --RQYINLYKIFTNEMDRMGPKELSATTNIGKMNEYY-DLPTIG------------R--------AHDAMDDCLNIATIL 202 (308)
T ss_dssp --SEEEEHHHHHHHHHHHHCCCCCCCCSHHHHHHHHT-TCCCCS------------C--------TTCHHHHHHHHHHHH
T ss_pred --cceeeHHHHHHHHhccccccccccCcCHHHHHHHc-CCCCCC------------C--------CcCHHHHHHHHHHHH
Confidence 136788888776542 1 278999999654 432211 0 012477999999998
Q ss_pred HHh
Q psy5925 499 EQL 501 (696)
Q Consensus 499 ~kl 501 (696)
.++
T Consensus 203 ~~l 205 (308)
T 3cg7_A 203 QRM 205 (308)
T ss_dssp HHH
T ss_pred HHH
Confidence 876
No 28
>1wlj_A Interferon stimulated gene 20KDA; exoribonuclease, hydrolase; HET: U5P; 1.90A {Homo sapiens} SCOP: c.55.3.5
Probab=93.38 E-value=0.28 Score=47.25 Aligned_cols=93 Identities=9% Similarity=0.097 Sum_probs=58.5
Q ss_pred CCHHHHHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEe
Q psy5925 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVIN 432 (696)
Q Consensus 353 ~sE~eLL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lD 432 (696)
.+..+.+..|.+++. -.+++|||.. ||+.+|..- + + ..-.+|
T Consensus 68 ~~~~~v~~~~~~~l~---~~~lV~hn~~-fD~~~L~~~-----------~---~--------------------~~~~id 109 (189)
T 1wlj_A 68 TPFAVARLEILQLLK---GKLVVGHDLK-HDFQALKED-----------M---S--------------------GYTIYD 109 (189)
T ss_dssp EEHHHHHHHHHHHHT---TSEEEESSHH-HHHHHTTCC-----------C---T--------------------TCEEEE
T ss_pred CCHHHHHHHHHHHHC---CCEEEECCcH-HHHHHHHHh-----------C---C--------------------CCceec
Confidence 356788999999886 3799999985 999876310 0 0 013567
Q ss_pred hHHHH--hh--hc-CCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 433 LWRLL--RH--EV-NLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 433 l~~~~--r~--~~-kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
+.... ++ .+ ...+++|+++++.+||.....- +. ..-++.||..+++|+.++
T Consensus 110 t~~~~~~~~~~~~p~~~~~~L~~l~~~~lgi~~~~~-----------~~-------~H~Al~Da~ata~l~~~l 165 (189)
T 1wlj_A 110 TSTDRLLWREAKLDHCRRVSLRVLSERLLHKSIQNS-----------LL-------GHSSVEDARATMELYQIS 165 (189)
T ss_dssp GGGCHHHHHHHTC-----CCHHHHHHHHTCCCCSCC-----------TT-------CCCHHHHHHHHHHHHHHH
T ss_pred hHhhhhhhhcccCCCCCCccHHHHHHHHcCCCCCCC-----------CC-------CcCcHHHHHHHHHHHHHH
Confidence 76643 22 22 3589999999999877543210 00 012477899999988775
No 29
>2igi_A Oligoribonuclease; RNAse, exoribonuclease, exonuclease, hydrolase, mRNA decay; 1.70A {Escherichia coli} SCOP: c.55.3.5 PDB: 1yta_A 1j9a_A
Probab=90.70 E-value=0.18 Score=48.02 Aligned_cols=42 Identities=21% Similarity=0.298 Sum_probs=33.7
Q ss_pred eCCHHHHHHHHHHHHHHhCC---CEEEecccccccHHHHHHHHHHc
Q psy5925 352 VSNEKELFSIFIENVRQWDP---DILIGYEIETLSWGYLLERGYVL 394 (696)
Q Consensus 352 ~~sE~eLL~~f~~~I~~~DP---DIIvGyNi~~fDl~YL~~Ra~~l 394 (696)
..+..+.+..|.+++..+-| .+++|||. .||+++|..-+..+
T Consensus 78 ~~~~~~v~~~~~~~l~~~~~~~~~~lv~hn~-~fD~~fL~~~~~~~ 122 (180)
T 2igi_A 78 TMGDREAELATLEFLKQWVPAGKSPICGNSI-GQDRRFLFKYMPEL 122 (180)
T ss_dssp CCCHHHHHHHHHHHHTTTSCTTTSCEEESSH-HHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHHHHHHHHHHHHh
Confidence 35788999999999987533 49999998 79999998765544
No 30
>2kfn_A Klenow fragment of DNA polymerase I; complex (polymerase/DNA), exonuclease, transferase, transferase/DNA complex; HET: US1; 2.03A {Escherichia coli} SCOP: c.55.3.5 e.8.1.1 PDB: 1d9f_A* 1d9d_A* 1krp_A* 1ksp_A* 1qsl_A* 1kfs_A* 2kfz_A* 2kzm_A* 2kzz_A* 1dpi_A* 1kfd_A* 1kln_A* 1d8y_A*
Probab=90.64 E-value=6.3 Score=44.86 Aligned_cols=106 Identities=8% Similarity=0.080 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhCCC-EEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehH
Q psy5925 356 KELFSIFIENVRQWDPD-ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLW 434 (696)
Q Consensus 356 ~eLL~~f~~~I~~~DPD-IIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~ 434 (696)
.+.+..|..++. ||+ ..+|||. .||+.+|.. +|+. +.| .++|+.
T Consensus 76 ~~vl~~L~~~L~--d~~i~kV~hna-k~D~~~L~~----~Gi~---------------------------l~~-~~~DT~ 120 (605)
T 2kfn_A 76 ERALELLKPLLE--DEKALKVGQNL-KYDRGILAN----YGIE---------------------------LRG-IAFDTM 120 (605)
T ss_dssp HHHHHHHHHHHT--CTTSCEEESSH-HHHHHHHHT----TTCC---------------------------CCC-EEEEHH
T ss_pred HHHHHHHHHHHc--CCCCeEEEECc-HHHHHHHHH----CCCC---------------------------CCC-ccccHH
Confidence 456677777765 555 5899998 799998864 3432 223 478987
Q ss_pred HHHhhhc-CCCCCCHHHHHHHHcCCCcCCCChhhHHH------HHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 435 RLLRHEV-NLQSYTFENIMYHVLHERIPLHSWKLLTC------WWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 435 ~~~r~~~-kl~sysL~~Va~~~L~~~k~~~~~~~l~~------~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
-..+--. ...+|+|++++..+||.... +++++.. -|..- .......|+..|+..+.+|..++
T Consensus 121 laayLL~p~~~~~~L~~La~~~Lg~~~i--~~~~~~gKg~~~~~~~~~---~le~~~~yAa~Da~~~~~L~~~L 189 (605)
T 2kfn_A 121 LESYILNSVAGRHDMDSLAERWLKHKTI--TFEEIAGKGKNQLTFNQI---ALEEAGRYAAEDADVTLQLHLKM 189 (605)
T ss_dssp HHHHHHCTTSSCCSHHHHHHHHSCCCCC--CHHHHHCSSTTCCCGGGS---CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCCCCCCCHHHHHHHhcCCCcc--cHHHHhCCCcccCCcccC---CHHHHHHHHHHHHHHHHHHHHHH
Confidence 7654333 35689999999999876432 2222210 01111 12567899999999999988866
No 31
>3tr8_A Oligoribonuclease; transcription, hydrolase; 2.50A {Coxiella burnetii}
Probab=89.96 E-value=0.33 Score=46.98 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=33.6
Q ss_pred CCHHHHHHHHHHHHHHh---CCCEEEecccccccHHHHHHHHHHcC
Q psy5925 353 SNEKELFSIFIENVRQW---DPDILIGYEIETLSWGYLLERGYVLG 395 (696)
Q Consensus 353 ~sE~eLL~~f~~~I~~~---DPDIIvGyNi~~fDl~YL~~Ra~~lg 395 (696)
.++.+.+..|+++++++ .-.+++|||+ .||++||..-+..+|
T Consensus 83 p~~~ev~~~~l~fl~~~~~~~~~~lvghn~-~FD~~FL~~~~~~~~ 127 (186)
T 3tr8_A 83 VDEVEAETLTLAFLEKYVSAGKSPLCGNSV-CQDRRFLSRYMPRLN 127 (186)
T ss_dssp CCHHHHHHHHHHHHTTTSCTTCSCEEESST-HHHHHHHHHHCHHHH
T ss_pred CCHHHHHHHHHHHHHHhccCCCcEEEEEcH-HHhHHHHHHHHHHcC
Confidence 57899999999999765 2358999998 799999987655443
No 32
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.76 E-value=0.11 Score=52.47 Aligned_cols=39 Identities=28% Similarity=0.750 Sum_probs=29.8
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeeccccc-------cCCCccchhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-------QLPCKRCIRM 52 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-------~~~cp~c~r~ 52 (696)
-.|++|++--. | ..+|+.|+..||..|.. +..||.|...
T Consensus 181 ~~C~iC~~iv~--~-----g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~ 226 (238)
T 3nw0_A 181 KICNICHSLLI--Q-----GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDY 226 (238)
T ss_dssp CBCTTTCSBCS--S-----CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCB
T ss_pred CcCcchhhHHh--C-----CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCC
Confidence 46999987433 2 37999999999999983 2379999763
No 33
>2xb1_A Pygopus homolog 2, B-cell CLL/lymphoma 9-like Pro; fusion protein, signal transduction, transcription, metal BI WNT proteins; 1.90A {Homo sapiens}
Probab=89.01 E-value=0.25 Score=43.27 Aligned_cols=71 Identities=21% Similarity=0.425 Sum_probs=42.7
Q ss_pred CCccceecCCCCCeeeecCCCCeeecC-CCCceeeccccc--c-------------CCCccchhhhhccccccceeeeeh
Q psy5925 4 ARGFICELCNSEEVIFPWQLSSVHRCN-QCGACFHTKCHS--Q-------------LPCKRCIRMRIRRDSMKGIVDVKC 67 (696)
Q Consensus 4 ~~g~~ce~c~~~~~i~p~~~~~~~~c~-~c~~~~h~~c~~--~-------------~~cp~c~r~~~r~~~~~~~~~~~~ 67 (696)
|..++|.+|+.+.- + ...-.+|. .|..=||..|.. . -.||.|.+..........+-.+-+
T Consensus 1 ~~~~~C~iC~~p~~--~--~~~mi~Cdd~C~~WfH~~CVglt~~~~~~i~~~~~~~~~Cp~C~~~~~~~~~~~~sk~~yv 76 (105)
T 2xb1_A 1 GLVYPCGACRSEVN--D--DQDAILCEASCQKWFHRECTGMTESAYGLLTTEASAVWACDLCLKTKEGSGSGSGSQFVYV 76 (105)
T ss_dssp -CCCBCTTTCSBCC--T--TSCEEECTTTTCCEEEGGGTTCCHHHHHHHHHCTTEEECCHHHHHTTTTC--------CEE
T ss_pred CCcCCCCCCCCccC--C--CCCEEEecCCcccccccccCCcCHHHHHhhccCCCCCEECccccCcCCCCCCCCCcccceE
Confidence 45689999997521 1 13567898 999999999974 1 149999987654443444445556
Q ss_pred hHHHHHHhhhC
Q psy5925 68 FEESSLERSMK 78 (696)
Q Consensus 68 ~~~~~l~~~~~ 78 (696)
|.+++--+.|.
T Consensus 77 fst~lan~aAe 87 (105)
T 2xb1_A 77 FTTHLANTAAE 87 (105)
T ss_dssp ECHHHHHHHHH
T ss_pred eccchhhhHHH
Confidence 65555555443
No 34
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=88.80 E-value=0.078 Score=44.03 Aligned_cols=29 Identities=28% Similarity=0.793 Sum_probs=21.4
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeeccccc
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS 42 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~ 42 (696)
.|++|..- ..+.-..|.-|+.|||..|.+
T Consensus 17 ~C~VC~~~------t~~~l~pCRvC~RvfH~~CL~ 45 (89)
T 1wil_A 17 MCDVCEVW------TAESLFPCRVCTRVFHDGCLR 45 (89)
T ss_dssp CCTTTCCC------CSSCCSSCSSSSSCCCHHHHH
T ss_pred ccCccccc------cccceeccccccccccHhhcc
Confidence 58888842 134445688999999999974
No 35
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=88.40 E-value=0.18 Score=41.28 Aligned_cols=38 Identities=29% Similarity=0.745 Sum_probs=28.8
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----c--CCCccchh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----Q--LPCKRCIR 51 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~--~~cp~c~r 51 (696)
-.|.+|++.- .| ..+|..|+..||..|.. . ..||.|.+
T Consensus 16 ~~C~IC~~~i--~~-----g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~ 60 (74)
T 2ct0_A 16 KICNICHSLL--IQ-----GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCND 60 (74)
T ss_dssp CBCSSSCCBC--SS-----SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCS
T ss_pred CcCcchhhHc--cc-----CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcC
Confidence 5699998742 22 35899999999999973 2 56999963
No 36
>2py5_A DNA polymerase; protein-DNA complex, replication, transferase/DNA complex; HET: DNA; 1.60A {Bacillus phage PHI29} SCOP: c.55.3.5 e.8.1.1 PDB: 1xhz_A* 1xhx_A* 2ex3_A* 1xi1_A* 2pyj_A* 2pyl_A* 2pzs_A*
Probab=88.29 E-value=0.11 Score=59.08 Aligned_cols=43 Identities=19% Similarity=0.288 Sum_probs=31.4
Q ss_pred CCCCCccccCCCCC--CCcccCceeeeeccccchhhhhh--hccCcccc
Q psy5925 94 SSFDSDMFPSSSSR--DRLYTDPIIVLDFQSLYPSVIIA--YNYCFSTC 138 (696)
Q Consensus 94 ~~~~~~~~~~~~~~--~~~~~~~~~~~d~~s~y~~~~~~--~~~~~~t~ 138 (696)
++|.|+.+-. .|. .|++. +|+++||+|||||+|.. +++...+.
T Consensus 224 ~~y~GGr~~~-~p~y~~~~~~-~i~~~D~~SLYPs~m~~~~~P~g~p~~ 270 (575)
T 2py5_A 224 YAYRGGFTWL-NDRFKEKEIG-EGMVFDVNSLYPAQMYSRLLPYGEPIV 270 (575)
T ss_dssp TTCCCCCEEE-CGGGBTCEEC-SEEEEEETTHHHHHHHHSCEEEEEEEE
T ss_pred HcCCCccccc-cccccccCCC-ceEEEecCCchHHHHcCCCCCCCCcee
Confidence 6888988853 565 55665 59999999999999876 44444343
No 37
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=88.07 E-value=0.3 Score=38.12 Aligned_cols=43 Identities=21% Similarity=0.716 Sum_probs=33.1
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeecccccc---------CCCccchhhhhcc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ---------LPCKRCIRMRIRR 56 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~---------~~cp~c~r~~~r~ 56 (696)
.-.|.+|+.. .....|..|...||..|... -.||.|.....++
T Consensus 5 ~~~C~vC~~~--------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~~~~ 56 (60)
T 2puy_A 5 EDFCSVCRKS--------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQMLKK 56 (60)
T ss_dssp CSSCTTTCCC--------SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHHHHT
T ss_pred CCCCcCCCCC--------CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChhhch
Confidence 4579999875 35689999999999999851 2499998765543
No 38
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=86.98 E-value=0.33 Score=39.56 Aligned_cols=46 Identities=26% Similarity=0.623 Sum_probs=34.7
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc---------cCCCccchhhhhcc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS---------QLPCKRCIRMRIRR 56 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~---------~~~cp~c~r~~~r~ 56 (696)
+..|.+|+..+ +-+.-..|..|..-||..|.. .-.||.|.....++
T Consensus 18 ~~~C~~C~~~~-----~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k~ 72 (75)
T 2k16_A 18 IWICPGCNKPD-----DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKKD 72 (75)
T ss_dssp EECBTTTTBCC-----SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCSC
T ss_pred CcCCCCCCCCC-----CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhhc
Confidence 56799999874 224578999999999999973 12499998775543
No 39
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=86.71 E-value=0.39 Score=38.94 Aligned_cols=47 Identities=23% Similarity=0.697 Sum_probs=34.8
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----c--CCCccchhhhhc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----Q--LPCKRCIRMRIR 55 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~--~~cp~c~r~~~r 55 (696)
.-.|.+|+..+. .+.+...-|..|...||..|.. . -.||+|...+.+
T Consensus 16 ~~~C~vC~~~~s---~~~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~~~~ 69 (71)
T 2ku3_A 16 DAVCSICMDGES---QNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 69 (71)
T ss_dssp SCSCSSSCCCCC---CSSSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHHHHHT
T ss_pred CCCCCCCCCCCC---CCCCCEEECCCCCCccccccCCCCcCCCCCcCCccCcCcCcc
Confidence 457999987641 2335677899999999999985 1 249999876554
No 40
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=86.44 E-value=0.45 Score=37.89 Aligned_cols=43 Identities=23% Similarity=0.712 Sum_probs=32.7
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc----c-----CCCccchhhhhcc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS----Q-----LPCKRCIRMRIRR 56 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~----~-----~~cp~c~r~~~r~ 56 (696)
.-.|.+|... .....|..|...||..|.. . -.||.|...+..+
T Consensus 8 ~~~C~vC~~~--------g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~~~~~ 59 (66)
T 1xwh_A 8 EDECAVCRDG--------GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQE 59 (66)
T ss_dssp CCSBSSSSCC--------SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHHTCCCC
T ss_pred CCCCccCCCC--------CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccCccccc
Confidence 4579999875 2567899999999999985 1 1499998765543
No 41
>1x9m_A DNA polymerase; DNA ploymerase, N-2-acetylaminofluorene, replication block, mutagenesis, transferase/electron transport/DNA complex; HET: DNA 2DT 8FG; 2.10A {Enterobacteria phage T7} SCOP: c.55.3.5 e.8.1.1 PDB: 1skr_A* 1skw_A* 1sl0_A* 1sks_A* 1sl2_A* 1t7p_A* 1t8e_A* 1tk0_A* 1tk5_A* 1tk8_A* 1tkd_A* 1sl1_A* 1x9s_A* 1x9w_A* 1zyq_A* 2ajq_A*
Probab=86.42 E-value=3.2 Score=48.23 Aligned_cols=114 Identities=13% Similarity=0.039 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHhCCCEEEecccccccHHHHHHHHHHc---CCCCcccccccccccccccCCCccccceeeec-ccEEEeh
Q psy5925 358 LFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL---GLNLNQELSRITEVEKRNSSRDEVKNTQLQMP-GRIVINL 433 (696)
Q Consensus 358 LL~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~l---gi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~-GRl~lDl 433 (696)
.+..|..++. .-.+++|||...||+.+|...++.. |+. +. | .++|+
T Consensus 42 ~l~~L~~~l~--~~~~kV~HNa~kfD~~~L~~~~~~~~~~Gi~---------------------------l~~~-~~~DT 91 (698)
T 1x9m_A 42 YLDALEAEVA--RGGLIVFHNGHKYDVPALTKLAKLQLNREFH---------------------------LPRE-NCIDT 91 (698)
T ss_dssp HHHHHHHHHH--TTCCEEESSTTTTHHHHHHHHHHHHHCCCCC---------------------------CCGG-GEEEH
T ss_pred HHHHHHHHHh--cCCeEEEcCChHHHHHHHHHhhhhcccCCcc---------------------------CCCC-cchhH
Confidence 4566666665 3357899998789999998765432 221 22 3 36788
Q ss_pred HHHHhhhc-CCCCCCHHHHHHHHcCCCcCC---------CChhhHHH--HHhcCCc--------ccHHHHHHHHHHHHHH
Q psy5925 434 WRLLRHEV-NLQSYTFENIMYHVLHERIPL---------HSWKLLTC--WWEHRTH--------LYKWMTVEHYLIRVTG 493 (696)
Q Consensus 434 ~~~~r~~~-kl~sysL~~Va~~~L~~~k~~---------~~~~~l~~--~~~~~~~--------~~~~~~i~Y~l~D~~l 493 (696)
+-..+-.. ...+|+|++++..+|+...+. +++.++.. .+..+.. ..-....+|+..||..
T Consensus 92 mlaayLL~p~~~~~~L~~La~~~L~~sL~~~g~~lg~~Ki~~~~~~g~~~~~kg~~~~~~~~~~~~~~~~~~YA~~Da~~ 171 (698)
T 1x9m_A 92 LVLSRLIHSNLKDTDMGLLRSGKLPGALEAWGYRLGEMKGEYKDDFKRMLEEQGEEYVDGMEWWNFNEEMMDYNVQDVVV 171 (698)
T ss_dssp HHHHHHHTTTSCCCTTTTSCGGGSCSCCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCTTGGGTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCHHHHHHHHcccchhhhcccccccccCHHHHhCcccccccccccccCCccccCHHHHHHHHHHHHH
Confidence 87664432 456899999999987321111 11111100 0001110 0015678999999999
Q ss_pred HHHHHHHh
Q psy5925 494 IIRLIEQL 501 (696)
Q Consensus 494 ~~~L~~kl 501 (696)
+.+|..+|
T Consensus 172 t~~L~~~L 179 (698)
T 1x9m_A 172 TKALLEKL 179 (698)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999987
No 42
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=86.33 E-value=0.56 Score=39.63 Aligned_cols=47 Identities=28% Similarity=0.684 Sum_probs=33.6
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeecccccc-------------CCCccchhhhhcc
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ-------------LPCKRCIRMRIRR 56 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~-------------~~cp~c~r~~~r~ 56 (696)
-.|.+|+..+. .......-|..|...||..|..- -.|++|.....++
T Consensus 17 ~~C~vC~~~~~---~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~~ 76 (88)
T 1wev_A 17 LACVVCRQMTV---ASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKRM 76 (88)
T ss_dssp CSCSSSCCCCC---CTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCCS
T ss_pred CcCCCCCCCCC---CCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhhhh
Confidence 47999987532 11134567999999999999841 1499998776544
No 43
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=85.85 E-value=0.38 Score=36.12 Aligned_cols=39 Identities=23% Similarity=0.727 Sum_probs=29.6
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeeccccc----c-----CCCccchh
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS----Q-----LPCKRCIR 51 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~----~-----~~cp~c~r 51 (696)
.|.+|+... +.+....|.+|...||..|.. + -.||.|..
T Consensus 2 ~C~vC~~~~-----~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKG-----EDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSS-----CCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCC-----CCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 488898764 235678999999999999983 1 14999964
No 44
>2gbz_A Oligoribonuclease; ORN, deddh, structural genomics, hydrolase; 2.30A {Xanthomonas campestris PV}
Probab=85.09 E-value=0.34 Score=46.84 Aligned_cols=42 Identities=12% Similarity=0.114 Sum_probs=33.3
Q ss_pred eCCHHHHHHHHHHHHHHhCC---CEEEecccccccHHHHHHHHHHc
Q psy5925 352 VSNEKELFSIFIENVRQWDP---DILIGYEIETLSWGYLLERGYVL 394 (696)
Q Consensus 352 ~~sE~eLL~~f~~~I~~~DP---DIIvGyNi~~fDl~YL~~Ra~~l 394 (696)
-.+..+.+..|.+++...-| .+++|||. .||+++|...+..+
T Consensus 82 ~p~~~ev~~~~~~~l~~~~~~~~~~lvghn~-~FD~~fL~~~~~~~ 126 (194)
T 2gbz_A 82 QVTHAQAEAQTVAFLGEWIRAGASPMCGNSI-CQDRRFLHRQMSRL 126 (194)
T ss_dssp CCCHHHHHHHHHHHHTTTCCTTSSCEEESSH-HHHHHHHHHHCHHH
T ss_pred CCCHHHHHHHHHHHHHHhCCCCCceEEecCH-HHhHHHHHHHHHHh
Confidence 45788999999999987521 34999998 79999998766554
No 45
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=85.02 E-value=0.62 Score=35.72 Aligned_cols=40 Identities=23% Similarity=0.733 Sum_probs=30.6
Q ss_pred CCccceecCCCCCeeeecCCCCeeecCCCCceeecccccc---------CCCccchh
Q psy5925 4 ARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ---------LPCKRCIR 51 (696)
Q Consensus 4 ~~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~---------~~cp~c~r 51 (696)
+..-.|.+|+.. .....|..|...||..|... -.||+|..
T Consensus 7 ~~~~~C~vC~~~--------g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS--------GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS--------SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC--------CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 345679999975 35679999999999999851 14999853
No 46
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=83.36 E-value=1 Score=35.53 Aligned_cols=49 Identities=22% Similarity=0.681 Sum_probs=35.2
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeecccccc------------CCCccchhhhhcc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ------------LPCKRCIRMRIRR 56 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~------------~~cp~c~r~~~r~ 56 (696)
..-+|.+|+..+- -+......|..|...||..|..- -.|++|...+..+
T Consensus 5 ~~~~C~vC~~~~~---~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~~~k 65 (66)
T 2yt5_A 5 SSGVCTICQEEYS---EAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFATTTK 65 (66)
T ss_dssp CCCCBSSSCCCCC---BTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTTSCC
T ss_pred CCCCCCCCCCCCC---CCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCccccC
Confidence 4568999997521 13356788999999999999851 1499998765543
No 47
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=82.68 E-value=0.97 Score=37.19 Aligned_cols=39 Identities=21% Similarity=0.698 Sum_probs=28.4
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeeccccc-------cC---CCccchh
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-------QL---PCKRCIR 51 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-------~~---~cp~c~r 51 (696)
.|++|+..+ +......|..|...||..|.. .+ .||.|..
T Consensus 28 ~C~vC~~~~-----~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 28 SCRVCGGKH-----EPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SCSSSCCCC-----CSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCcCcCCcC-----CCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 567777543 235677899999999999985 12 4888853
No 48
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=82.63 E-value=0.8 Score=35.85 Aligned_cols=40 Identities=23% Similarity=0.709 Sum_probs=30.9
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeecccccc---------CCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ---------LPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~---------~~cp~c~r~ 52 (696)
..-.|.+|+.. .....|..|...||..|... -.||.|.+.
T Consensus 10 ~~~~C~vC~~~--------g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG--------GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC--------SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC--------CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34578999874 36788999999999999841 249999764
No 49
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=81.73 E-value=0.41 Score=40.51 Aligned_cols=49 Identities=24% Similarity=0.667 Sum_probs=35.4
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-------cCCCccchhhhhccc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-------QLPCKRCIRMRIRRD 57 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-------~~~cp~c~r~~~r~~ 57 (696)
.-.|.+|+.... .+.+....|..|...||..|.. .-.||.|........
T Consensus 25 ~~~C~vC~~~~s---~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~~~~ 80 (88)
T 2l43_A 25 DAVCSICMDGES---QNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRARPA 80 (88)
T ss_dssp CCCCSSCCSSSS---CSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHTTSCC
T ss_pred CCcCCcCCCCCC---CCCCCEEECCCCCchhhcccCCCCccCCCceECccccCccchhh
Confidence 467999987532 1224667899999999999985 125999987665543
No 50
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=81.31 E-value=0.67 Score=39.48 Aligned_cols=42 Identities=24% Similarity=0.767 Sum_probs=32.0
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeeccccc-------c--CCCccchhhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-------Q--LPCKRCIRMR 53 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-------~--~~cp~c~r~~ 53 (696)
-.|.+|+... +......|..|...||..|.. . -.||.|...+
T Consensus 17 ~~C~vC~~~~-----~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~~ 67 (92)
T 2e6r_A 17 YICQVCSRGD-----EDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILAE 67 (92)
T ss_dssp CCCSSSCCSG-----GGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHHH
T ss_pred CCCccCCCcC-----CCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCcc
Confidence 3699999864 124678999999999999985 1 1399997653
No 51
>1vk0_A Hypothetical protein; homohexamer, AT5G06450, struc genomics, protein structure initiative, center for eukaryot structural genomics, CESG; 2.10A {Arabidopsis thaliana} SCOP: c.55.3.5 PDB: 2q3s_A
Probab=80.97 E-value=3.9 Score=39.95 Aligned_cols=100 Identities=19% Similarity=0.156 Sum_probs=68.3
Q ss_pred HHHHHHHhCCCE-EEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehHHHHhhh
Q psy5925 362 FIENVRQWDPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE 440 (696)
Q Consensus 362 f~~~I~~~DPDI-IvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~ 440 (696)
|.+++. ||+| -+||.+ .+|+..|.+. +|+.. +-++|+-.++...
T Consensus 100 L~~lL~--d~~i~Kvg~~~-~~D~~~L~~~---~g~~~-----------------------------~~~~Dl~~la~~~ 144 (206)
T 1vk0_A 100 LYRFFA--SKFVTFVGVQI-EEDLDLLREN---HGLVI-----------------------------RNAINVGKLAAEA 144 (206)
T ss_dssp HHHHHT--CSSSEEEESSC-HHHHHHHHHH---HCCCC-----------------------------SSEEEHHHHHHHH
T ss_pred HHHHhc--CCCceEEEecc-HHHHHHHHHh---cCCCc-----------------------------CCeeeHHHHHHHH
Confidence 445553 7886 489988 5799888443 34321 1267876555433
Q ss_pred cC---CCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 441 VN---LQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 441 ~k---l~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
+. ..+.+|..+++++||... .-.....++|-. + --..-+.|+..||...++|..+|
T Consensus 145 lg~~~~~~~gL~~Lv~~~lg~~l-K~k~~~~SdW~~--p--Ls~~Qi~YAA~Da~~l~~l~~~L 203 (206)
T 1vk0_A 145 RGTLVLEFLGTRELAHRVLWSDL-GQLDSIEAKWEK--A--GPEEQLEAAAIEGWLIVNVWDQL 203 (206)
T ss_dssp HTCGGGGGCCHHHHHHHHHCCCC-HHHHHHHHTGGG--S--CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCccHHHHHHHHhCCcC-CCCCcccCCCCC--c--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 32 467899999999999765 111235677765 3 34677999999999999999987
No 52
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=80.16 E-value=0.87 Score=43.72 Aligned_cols=40 Identities=25% Similarity=0.712 Sum_probs=31.2
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeeccccc---------cCCCccchhhhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS---------QLPCKRCIRMRI 54 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~---------~~~cp~c~r~~~ 54 (696)
-.|++|+.. ....-|..|...||..|.. .-.||.|.....
T Consensus 5 ~~C~~C~~~--------g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~ 53 (184)
T 3o36_A 5 DWCAVCQNG--------GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLSK 53 (184)
T ss_dssp SSCTTTCCC--------SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CccccCCCC--------CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCccc
Confidence 469999865 3467899999999999973 124999987654
No 53
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=79.87 E-value=0.95 Score=36.09 Aligned_cols=38 Identities=39% Similarity=1.010 Sum_probs=29.6
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc----c-----CCCccchh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS----Q-----LPCKRCIR 51 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~----~-----~~cp~c~r 51 (696)
+-.|.+|++. .....|..|...||..|.. . -.||.|..
T Consensus 12 ~~~C~vC~~~--------~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~ 58 (66)
T 2lri_C 12 GARCGVCGDG--------TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSG 58 (66)
T ss_dssp TCCCTTTSCC--------TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTT
T ss_pred CCCcCCCCCC--------CeEEECCCCCCceecccCCCccCcCCCCCEECccccC
Confidence 4569999864 3467999999999999984 1 25999964
No 54
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=79.65 E-value=1 Score=35.17 Aligned_cols=39 Identities=23% Similarity=0.707 Sum_probs=30.0
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeecccccc---------CCCccchhh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ---------LPCKRCIRM 52 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~---------~~cp~c~r~ 52 (696)
.-.|.+|+.. .....|..|...||..|... -.||.|...
T Consensus 9 ~~~C~vC~~~--------g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 9 MEFCRVCKDG--------GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp CSSCTTTCCC--------SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCcCCCCCCC--------CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 4578999864 25678999999999999851 149999754
No 55
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=79.51 E-value=1.4 Score=37.26 Aligned_cols=41 Identities=34% Similarity=0.901 Sum_probs=31.4
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc---------cCCCccchhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS---------QLPCKRCIRMR 53 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~---------~~~cp~c~r~~ 53 (696)
..-.|..|.... ....|..|...||..|.. .-.||.|....
T Consensus 24 n~~~C~vC~~~g--------~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~ 73 (88)
T 1fp0_A 24 SATICRVCQKPG--------DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 73 (88)
T ss_dssp SSSCCSSSCSSS--------CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred CCCcCcCcCCCC--------CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence 355799999763 457899999999999983 12499998543
No 56
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=78.92 E-value=1.3 Score=42.64 Aligned_cols=45 Identities=27% Similarity=0.738 Sum_probs=33.3
Q ss_pred CccceecCCCCCeeeecCC----CCeeecCCCCceeeccccc----------------cCCCccchhhhh
Q psy5925 5 RGFICELCNSEEVIFPWQL----SSVHRCNQCGACFHTKCHS----------------QLPCKRCIRMRI 54 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~----~~~~~c~~c~~~~h~~c~~----------------~~~cp~c~r~~~ 54 (696)
+|-.|.+|+. |++. ..-.+|..|..-||..|-. .-.||.|.+...
T Consensus 1 ~G~~CpiC~k-----~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~ 65 (183)
T 3lqh_A 1 SGNFCPLCDK-----CYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHP 65 (183)
T ss_dssp -CCBCTTTCC-----BCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSS
T ss_pred CcCcCCCCcC-----ccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCC
Confidence 4788999986 3332 2367999999999999973 126999987654
No 57
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=78.68 E-value=1.3 Score=39.08 Aligned_cols=44 Identities=23% Similarity=0.651 Sum_probs=33.1
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeecccccc---------CCCccchhhhhcc
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ---------LPCKRCIRMRIRR 56 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~---------~~cp~c~r~~~r~ 56 (696)
.|++|+..+ +......|.+|...||..|... -.||.|......+
T Consensus 60 ~C~~C~~~~-----~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~~k 112 (114)
T 2kwj_A 60 SCILCGTSE-----NDDQLLFCDDCDRGYHMYCLNPPVAEPPEGSWSCHLCWELLKEK 112 (114)
T ss_dssp CCTTTTCCT-----TTTTEEECSSSCCEEETTTSSSCCSSCCSSCCCCHHHHHHHHHT
T ss_pred ccCcccccC-----CCCceEEcCCCCccccccccCCCccCCCCCCeECccccchhhcc
Confidence 577888753 2357789999999999999851 1499998766553
No 58
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=78.05 E-value=1.4 Score=35.47 Aligned_cols=39 Identities=26% Similarity=0.733 Sum_probs=28.7
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeeccccc-------cC---CCccchh
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-------QL---PCKRCIR 51 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-------~~---~cp~c~r 51 (696)
.|.+|+..+ +......|..|...||..|.. ++ .||+|..
T Consensus 20 ~C~~C~~~~-----~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQ-----DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCS-----CGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcC-----CCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 567777643 235677899999999999985 12 5888864
No 59
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=77.93 E-value=1.4 Score=36.30 Aligned_cols=39 Identities=26% Similarity=0.757 Sum_probs=29.4
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeeccccc---------c-CCCccchh
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS---------Q-LPCKRCIR 51 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~---------~-~~cp~c~r 51 (696)
.|++|+..+ +.+....|..|...||..|.. . -.||.|..
T Consensus 28 ~C~vC~~~~-----d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQ-----DPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCS-----CGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCC-----CCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 588888765 335678899999999999985 1 25888853
No 60
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=77.43 E-value=1.5 Score=37.74 Aligned_cols=30 Identities=23% Similarity=0.578 Sum_probs=23.7
Q ss_pred CCCeeecCCCCceeecccccc--------CCCccchhh
Q psy5925 23 LSSVHRCNQCGACFHTKCHSQ--------LPCKRCIRM 52 (696)
Q Consensus 23 ~~~~~~c~~c~~~~h~~c~~~--------~~cp~c~r~ 52 (696)
......|..|...||..|..- -.||.|..+
T Consensus 39 ~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~ 76 (98)
T 2lv9_A 39 DGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76 (98)
T ss_dssp SSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSS
T ss_pred CCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCC
Confidence 356789999999999999841 259999643
No 61
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.71 E-value=1.2 Score=35.69 Aligned_cols=42 Identities=24% Similarity=0.624 Sum_probs=29.2
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIR 51 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r 51 (696)
....|-+|... |......+...|+.+||..|.. ...||-|.+
T Consensus 22 ~~~~C~IC~~~-----~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~ 68 (75)
T 1x4j_A 22 EQTLCVVCMCD-----FESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRA 68 (75)
T ss_dssp SCCEETTTTEE-----CCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCC
T ss_pred CCCCCeECCcc-----cCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCC
Confidence 35678889753 3333444556699999999974 457999943
No 62
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=75.88 E-value=1.2 Score=43.72 Aligned_cols=41 Identities=24% Similarity=0.665 Sum_probs=31.8
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc---------cCCCccchhhhh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS---------QLPCKRCIRMRI 54 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~---------~~~cp~c~r~~~ 54 (696)
.-.|..|+... ...-|..|...||..|.. .-.||.|.....
T Consensus 7 ~~~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 7 EDWCAVCQNGG--------DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp CSSBTTTCCCE--------EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC--------ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45799999763 356799999999999983 125999987654
No 63
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=75.05 E-value=1.4 Score=34.64 Aligned_cols=42 Identities=24% Similarity=0.390 Sum_probs=28.2
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIR 51 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r 51 (696)
....|-+|... |..........|+..||..|.. ...||-|..
T Consensus 13 ~~~~C~IC~~~-----~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~ 59 (69)
T 2kiz_A 13 TEEKCTICLSI-----LEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRV 59 (69)
T ss_dssp CCCSBTTTTBC-----CCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCS
T ss_pred CCCCCeeCCcc-----ccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCc
Confidence 34678899752 2222334445699999999974 467999954
No 64
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=74.38 E-value=2.5 Score=34.04 Aligned_cols=45 Identities=24% Similarity=0.626 Sum_probs=29.2
Q ss_pred CCccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhhh
Q psy5925 4 ARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRMR 53 (696)
Q Consensus 4 ~~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~~ 53 (696)
...+.|-+|... |.......-..|+..||..|.. ...||-|...-
T Consensus 13 ~~~~~C~IC~~~-----~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~ 62 (78)
T 2ect_A 13 GSGLECPVCKED-----YALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 62 (78)
T ss_dssp SSSCCCTTTTSC-----CCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCC
T ss_pred CCCCCCeeCCcc-----ccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCcc
Confidence 346789999764 2211222223599999999974 35799995543
No 65
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=73.97 E-value=2.2 Score=31.66 Aligned_cols=42 Identities=26% Similarity=0.628 Sum_probs=28.9
Q ss_pred CccceecCCCCCeeeecCC-CCeeecCCCCceeeccccc-----cCCCccchh
Q psy5925 5 RGFICELCNSEEVIFPWQL-SSVHRCNQCGACFHTKCHS-----QLPCKRCIR 51 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~-~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r 51 (696)
.+..|.+|... |.. +.......|+-.||..|.. +..||-|.+
T Consensus 4 ~~~~C~IC~~~-----~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~ 51 (55)
T 1iym_A 4 DGVECAVCLAE-----LEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRL 51 (55)
T ss_dssp CSCCCTTTCCC-----CCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCC
T ss_pred CCCcCccCCcc-----ccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCC
Confidence 45678999764 121 2344556799999999974 457999953
No 66
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=72.41 E-value=3.1 Score=32.54 Aligned_cols=47 Identities=23% Similarity=0.427 Sum_probs=33.5
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc----------cCCCccchhhhhc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS----------QLPCKRCIRMRIR 55 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~----------~~~cp~c~r~~~r 55 (696)
.+-.|.+|+.+.- +...-.+|..|..=||..|.. .-.||+|...+.|
T Consensus 5 e~~~C~~C~~~~~----~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k~~~ 61 (64)
T 1we9_A 5 SSGQCGACGESYA----ADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNKSGP 61 (64)
T ss_dssp SCCCCSSSCCCCC----SSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTTTCS
T ss_pred CCCCCCCCCCccC----CCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCcCCC
Confidence 3556888887421 123568999999999999973 1249999887665
No 67
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=71.13 E-value=2.8 Score=31.09 Aligned_cols=43 Identities=21% Similarity=0.451 Sum_probs=29.4
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIR 51 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r 51 (696)
..+.|.+|.+.-. +.........|+-+||..|.. ...||-|.+
T Consensus 4 ~~~~C~IC~~~~~----~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 51 (55)
T 2ecm_A 4 GSSGCPICLEDIH----TSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51 (55)
T ss_dssp CCCSCTTTCCCCC----TTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCC
T ss_pred CCCcCcccChhhc----CCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCC
Confidence 4578999976410 112345667799999999974 357999854
No 68
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=70.20 E-value=0.87 Score=35.00 Aligned_cols=48 Identities=19% Similarity=0.409 Sum_probs=30.8
Q ss_pred CCccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhh
Q psy5925 4 ARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRM 52 (696)
Q Consensus 4 ~~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~ 52 (696)
+..+.|.+|.+. ..-|-+.........|+-.||..|.. +..||-|...
T Consensus 1 g~~~~C~IC~~~-~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 53 (64)
T 2xeu_A 1 GAMVSCPICMDG-YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 53 (64)
T ss_dssp CCCCBCTTTCCB-HHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCB
T ss_pred CCCCCCCccChh-hhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCcc
Confidence 456889999773 11111112233456799999999984 4579999544
No 69
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=68.43 E-value=2.2 Score=41.12 Aligned_cols=38 Identities=37% Similarity=0.989 Sum_probs=29.6
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeeccccc---------cCCCccchhhh
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS---------QLPCKRCIRMR 53 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~---------~~~cp~c~r~~ 53 (696)
.|..|+... ....|.+|...||..|.. .-.||.|....
T Consensus 4 ~C~~C~~~g--------~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~~ 50 (189)
T 2ro1_A 4 ICRVCQKPG--------DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP 50 (189)
T ss_dssp CBTTTCCCS--------SCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCSC
T ss_pred cCccCCCCC--------ceeECCCCCchhccccCCCCcccCCCCCCCCcCccCCC
Confidence 689998763 356799999999999983 12499998654
No 70
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=66.94 E-value=3.6 Score=33.15 Aligned_cols=43 Identities=26% Similarity=0.646 Sum_probs=30.8
Q ss_pred cceecCCCCCeeeecCCCCeeecCC--CC-ceeeccccc-------cCCCccchhhhhcc
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQ--CG-ACFHTKCHS-------QLPCKRCIRMRIRR 56 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~--c~-~~~h~~c~~-------~~~cp~c~r~~~r~ 56 (696)
-.| +|+...- ..-..|.. |. .-||..|.. .-.||.|.+.+.++
T Consensus 17 ~~C-~C~~~~~------g~MI~CD~~~C~~~wfH~~Cvgl~~~p~g~w~Cp~C~~~~~k~ 69 (71)
T 1wen_A 17 TYC-LCHQVSY------GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPS 69 (71)
T ss_dssp CCS-TTCCCSC------SSEECCSCSSCSCCCEETTTTTCSSCCSSCCCCTTTSSCSSSC
T ss_pred CEE-ECCCCCC------CCEeEeeCCCCCCccEecccCCcCcCCCCCEECCCCCcccccc
Confidence 457 7888641 24678999 77 689999984 12599998766543
No 71
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=66.68 E-value=2.7 Score=33.43 Aligned_cols=41 Identities=22% Similarity=0.543 Sum_probs=27.2
Q ss_pred CccceecCCCCCeeeecCC-CCeeecCCCCceeeccccc-----cCCCccchh
Q psy5925 5 RGFICELCNSEEVIFPWQL-SSVHRCNQCGACFHTKCHS-----QLPCKRCIR 51 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~-~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r 51 (696)
....|-+|... |.. ..+.. -.|+..||..|.. ...||-|.+
T Consensus 14 ~~~~C~IC~~~-----~~~~~~~~~-~~C~H~f~~~Ci~~~~~~~~~CP~Cr~ 60 (74)
T 2ep4_A 14 LHELCAVCLED-----FKPRDELGI-CPCKHAFHRKCLIKWLEVRKVCPLCNM 60 (74)
T ss_dssp CSCBCSSSCCB-----CCSSSCEEE-ETTTEEEEHHHHHHHHHHCSBCTTTCC
T ss_pred CCCCCcCCCcc-----cCCCCcEEE-cCCCCEecHHHHHHHHHcCCcCCCcCc
Confidence 35679999874 221 12222 2599999999974 357999954
No 72
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=66.34 E-value=4 Score=32.55 Aligned_cols=40 Identities=23% Similarity=0.654 Sum_probs=29.4
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc--c------CCCccchh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--Q------LPCKRCIR 51 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~--~------~~cp~c~r 51 (696)
+..| +|+.+. +-..-.+|..|..-||..|.. . -.||.|.+
T Consensus 19 ~~~C-iC~~~~-----~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 19 LVTC-FCMKPF-----AGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp CCCS-TTCCCC-----TTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred ceEe-ECCCcC-----CCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 4567 888743 334578999999999999984 1 24999865
No 73
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=65.93 E-value=1.9 Score=33.92 Aligned_cols=47 Identities=19% Similarity=0.428 Sum_probs=31.6
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~ 52 (696)
..+.|.+|.+. ..-|.+.........|+-.||..|.. +..||-|...
T Consensus 9 ~~~~C~IC~~~-~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 60 (71)
T 3ng2_A 9 GTVSCPICMDG-YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 60 (71)
T ss_dssp TCCBCTTTCCB-HHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCB
T ss_pred CCCCCcccChh-hhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCc
Confidence 46789999864 11222223444667899999999984 4579999544
No 74
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=64.87 E-value=3.7 Score=33.32 Aligned_cols=43 Identities=21% Similarity=0.645 Sum_probs=31.5
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc--------------cCCCccchhhhh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--------------QLPCKRCIRMRI 54 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~--------------~~~cp~c~r~~~ 54 (696)
+..| +|+... +-..-.+|..|..=||..|.. .-.||.|.+.+.
T Consensus 16 ~~~C-~C~~~~-----~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 16 ALYC-ICRQPH-----NNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCCS-TTCCCC-----CSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCEE-ECCCcc-----CCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCccC
Confidence 4567 788764 224678999999999999973 124999987654
No 75
>1wee_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=64.62 E-value=5 Score=32.22 Aligned_cols=41 Identities=29% Similarity=0.781 Sum_probs=29.1
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeeccccc--c-------CCCccchhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--Q-------LPCKRCIRM 52 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~--~-------~~cp~c~r~ 52 (696)
..| +|+... .+-..-.+|..|..=||..|.. . -.||.|.+.
T Consensus 17 ~~C-~C~~~~----~~g~~mI~Cd~C~~W~H~~Cvg~~~~~~~~~~~~C~~C~~~ 66 (72)
T 1wee_A 17 VDC-KCGTKD----DDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRCIEL 66 (72)
T ss_dssp ECC-TTCCCS----CCSSCEEECSSSCEEEETTTTTCCTTSCCCSCCCCHHHHHH
T ss_pred eEe-eCCCcc----CCCCcEEECCCCCCccCCeeeccCccccCCCcEECCCccCC
Confidence 457 687752 1113478999999999999974 1 249999764
No 76
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto- oncogene, zinc, ATP-binding, phorbol-ester binding; NMR {Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Probab=63.87 E-value=4.4 Score=30.12 Aligned_cols=31 Identities=29% Similarity=0.898 Sum_probs=24.2
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
.=.|++|++ .|+ | -.+|..|+-..|+.|...
T Consensus 14 pt~C~~C~~--~l~--q---G~~C~~C~~~~H~~C~~~ 44 (52)
T 1faq_A 14 LAFCDICQK--FLL--N---GFRCQTCGYKFHEHCSTK 44 (52)
T ss_dssp CEECTTSSS--EEC--S---EEECTTTTCCBCSTTSSS
T ss_pred CcCCCCccc--ccc--c---CCEeCCCCCeEChhHHhh
Confidence 446888865 454 3 579999999999999975
No 77
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=63.12 E-value=2.9 Score=35.03 Aligned_cols=42 Identities=29% Similarity=0.578 Sum_probs=27.4
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIR 51 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r 51 (696)
....|-+|... |......+...|+-.||..|.. ...||-|.+
T Consensus 39 ~~~~C~IC~~~-----~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~ 85 (91)
T 2l0b_A 39 QEMCCPICCSE-----YVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRC 85 (91)
T ss_dssp SCSEETTTTEE-----CCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCC
T ss_pred CCCCCcccChh-----hcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCc
Confidence 34578888652 2222333334599999999973 457999954
No 78
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=62.29 E-value=3.4 Score=35.08 Aligned_cols=43 Identities=26% Similarity=0.694 Sum_probs=30.3
Q ss_pred cceecCCCCCeeeecCCCCeeecCC--CC-ceeeccccc-------cCCCccchhhhhcc
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQ--CG-ACFHTKCHS-------QLPCKRCIRMRIRR 56 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~--c~-~~~h~~c~~-------~~~cp~c~r~~~r~ 56 (696)
-.| +|+... + ..-..|.. |. .-||..|.. +-.||.|.+.+.++
T Consensus 37 ~yC-iC~~~~--~----g~MI~CD~~dC~~~WfH~~CVgl~~~p~g~W~Cp~C~~~~~k~ 89 (91)
T 1weu_A 37 TYC-LCHQVS--Y----GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPS 89 (91)
T ss_dssp BCS-TTCCBC--C----SCCCCCSCSSCSCCCCCSTTTTCSSCCCSSCCCTTTCCCCSSS
T ss_pred cEE-ECCCCC--C----CCEeEecCCCCCCCCEecccCCcCcCCCCCEECcCccCcCCcC
Confidence 457 888754 2 24568999 76 689999984 12599998765543
No 79
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=62.22 E-value=4.8 Score=33.96 Aligned_cols=43 Identities=16% Similarity=0.405 Sum_probs=29.5
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhhhhc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRMRIR 55 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~~~r 55 (696)
.+.|.+|.+. |. +......||..||..|.. +..||-|...-..
T Consensus 22 ~~~C~IC~~~-----~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEY-----FN--IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSB-----CS--SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCcccCChh-----hC--CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 4789999763 11 233445799999999974 3579999765443
No 80
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.09 E-value=5 Score=34.95 Aligned_cols=41 Identities=27% Similarity=0.644 Sum_probs=29.7
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeecccccc---------CCCccchhhh
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ---------LPCKRCIRMR 53 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~---------~~cp~c~r~~ 53 (696)
.|.+|+...- ......|..|...||..|... -.||.|..-+
T Consensus 56 ~C~~C~~~~~-----~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c~ 105 (111)
T 2ysm_A 56 VCQNCKQSGE-----DSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRICI 105 (111)
T ss_dssp CCTTTCCCSC-----CTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCCS
T ss_pred cccccCccCC-----CCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCcC
Confidence 4677776531 246889999999999999851 2499886543
No 81
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=61.69 E-value=3.2 Score=32.85 Aligned_cols=33 Identities=24% Similarity=0.622 Sum_probs=24.4
Q ss_pred ccceecCCCCCeeeecCCCCeeecC-CCCceeeccccc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCN-QCGACFHTKCHS 42 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~-~c~~~~h~~c~~ 42 (696)
.++|-+|+.+. . +...-.+|. .|..-||..|..
T Consensus 8 ~~~C~~C~~p~--~--~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 8 VYPCGICTNEV--N--DDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp -CBCTTTCSBC--C--TTSCEEEBTTTTCCEEEHHHHT
T ss_pred cCcCccCCCcc--C--CCCCeEecccCccccCchhccC
Confidence 46788888752 1 224678999 999999999973
No 82
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=61.57 E-value=4.7 Score=31.29 Aligned_cols=41 Identities=17% Similarity=0.324 Sum_probs=28.6
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~ 52 (696)
.+..|-+|.+. +. +......|+..||..|.. +..||-|...
T Consensus 4 ~~~~C~IC~~~-----~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~ 49 (68)
T 1chc_A 4 VAERCPICLED-----PS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVP 49 (68)
T ss_dssp CCCCCSSCCSC-----CC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCC
T ss_pred CCCCCeeCCcc-----cc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChh
Confidence 45679999875 11 222455799999999974 4679999543
No 83
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=61.34 E-value=3.2 Score=35.40 Aligned_cols=42 Identities=21% Similarity=0.490 Sum_probs=30.9
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----c-CCCccchhhhh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----Q-LPCKRCIRMRI 54 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~-~~cp~c~r~~~ 54 (696)
.+.|.+|.+.- . ....|..||..||..|.. . ..||.|...-.
T Consensus 22 ~~~C~IC~~~~-----~--~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKL-----R--DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBC-----S--SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCccc-----c--CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 46899998731 1 356778999999999974 2 47999966543
No 84
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=59.99 E-value=6 Score=33.44 Aligned_cols=43 Identities=21% Similarity=0.661 Sum_probs=30.4
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCC---ceeeccccc-------cCCCcc-chhhhhcc
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCG---ACFHTKCHS-------QLPCKR-CIRMRIRR 56 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~---~~~h~~c~~-------~~~cp~-c~r~~~r~ 56 (696)
-.| +|+..+ + . .-..|..|. .-||..|.. .-.||. |.+...++
T Consensus 27 ~yC-iC~~~~--~--g--~MI~CD~c~C~~eWfH~~CVgl~~~p~~~W~Cp~cC~~~~k~~ 80 (90)
T 2jmi_A 27 VYC-FCRNVS--Y--G--PMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIANQR 80 (90)
T ss_dssp CCS-TTTCCC--S--S--SEECCCSSSCSCSCEETTTSSCSSCTTSCCCSSHHHHHHHHHS
T ss_pred cEE-EeCCCC--C--C--CEEEecCCCCccccCcCccCCCCcCCCCCccCChhhcchhhcc
Confidence 457 888753 1 2 357899976 789999984 125999 98776644
No 85
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=59.95 E-value=4 Score=32.72 Aligned_cols=43 Identities=9% Similarity=0.197 Sum_probs=29.0
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccchhhhhc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCIRMRIR 55 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~~r 55 (696)
..|.|.+|.+. |. +-... .||..|++.|.. ...||-|...-..
T Consensus 7 ~~~~C~IC~~~-----~~--~Pv~~-~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 7 EYFRCPISLEL-----MK--DPVIV-STGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSCTTTSCC-----CS--SEEEE-TTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred ccCCCCCcccc-----cc--CCEEc-CCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 46899999873 22 11222 699999999973 3469999765443
No 86
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=59.11 E-value=7.3 Score=32.38 Aligned_cols=37 Identities=19% Similarity=0.610 Sum_probs=27.5
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccccC
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQL 44 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~~ 44 (696)
+.-.|+.|++ .|+-+- ....+|..|+-..|+.|....
T Consensus 27 ~pt~C~~C~~--~l~Gl~-kqG~~C~~C~~~~Hk~C~~~v 63 (85)
T 2eli_A 27 SPTFCDHCGS--LLYGLI-HQGMKCDTCDMNVHKQCVINV 63 (85)
T ss_dssp SCCBCSSSCC--BCCCSS-SCEEECSSSCCEEETTTTTTS
T ss_pred CCcCCcccCc--cccccc-cCCCcCCCcCCccCHhHHhhc
Confidence 3456888865 565543 366899999999999999753
No 87
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.26 E-value=6.4 Score=32.52 Aligned_cols=36 Identities=25% Similarity=0.728 Sum_probs=26.9
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
+.-.|++|+. .|+-+- ....+|..|+-..|+.|...
T Consensus 27 ~pt~C~~C~~--~lwGl~-kqg~~C~~C~~~~Hk~C~~~ 62 (83)
T 2yuu_A 27 QPTFCSVCKD--FVWGLN-KQGYKCRQCNAAIHKKCIDK 62 (83)
T ss_dssp SCCCCSSSCC--CCCSSS-CCEEEETTTCCEECTTGGGT
T ss_pred CCcChhhcCh--hhcccc-ccccccCCcCCeeChhhhhh
Confidence 3456888865 454432 36689999999999999975
No 88
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc- binding protein, signaling protein; NMR {Mus musculus} SCOP: g.49.1.1 PDB: 1kbf_A
Probab=58.22 E-value=4.5 Score=30.17 Aligned_cols=29 Identities=24% Similarity=0.791 Sum_probs=21.9
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
.|+.|+. .|| + -.+|.+|+..+|+.|...
T Consensus 16 ~C~~C~k--~i~--~---G~kC~~Ck~~cH~kC~~~ 44 (49)
T 1kbe_A 16 VCNVCQK--SMI--F---GVKCKHCRLKCHNKCTKE 44 (49)
T ss_dssp CCSSSCC--SSC--C---EEEETTTTEEESSSCTTT
T ss_pred CccccCc--eeE--C---cCCCCCCCCccchhhcCc
Confidence 5777744 454 3 279999999999999863
No 89
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=57.97 E-value=3.5 Score=38.49 Aligned_cols=41 Identities=17% Similarity=0.506 Sum_probs=29.4
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccchhhh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCIRMR 53 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~ 53 (696)
.+.|-+|... |. +...+..||..||..|.. ...||-|...-
T Consensus 54 ~~~C~IC~~~-----~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 100 (165)
T 2ckl_B 54 ELMCPICLDM-----LK--NTMTTKECLHRFCADCIITALRSGNKECPTCRKKL 100 (165)
T ss_dssp HHBCTTTSSB-----CS--SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBC
T ss_pred CCCCcccChH-----hh--CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcC
Confidence 4689999763 11 345667899999999973 34699997543
No 90
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=57.67 E-value=3.5 Score=38.96 Aligned_cols=45 Identities=20% Similarity=0.634 Sum_probs=32.5
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc----------cCCCccchhhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS----------QLPCKRCIRMRI 54 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~----------~~~cp~c~r~~~ 54 (696)
.+..| +|+.+.- +...-.+|..|...||..|.. .-.||.|.+...
T Consensus 7 ~~~~C-~C~~~~~----~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~~ 61 (174)
T 2ri7_A 7 TKLYC-ICKTPED----ESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTED 61 (174)
T ss_dssp CCEET-TTTEECC----TTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHHH
T ss_pred CCcEe-eCCCCCC----CCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchhc
Confidence 45678 8987420 123568999999999999974 124999998764
No 91
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=56.90 E-value=8 Score=28.91 Aligned_cols=31 Identities=23% Similarity=0.736 Sum_probs=23.4
Q ss_pred cCCCCeeecCCCCceeeccccc--c------CCCccchh
Q psy5925 21 WQLSSVHRCNQCGACFHTKCHS--Q------LPCKRCIR 51 (696)
Q Consensus 21 ~~~~~~~~c~~c~~~~h~~c~~--~------~~cp~c~r 51 (696)
.+-..-.+|..|..=||..|.. . -.||+|.+
T Consensus 13 ~~~~~MI~Cd~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~ 51 (52)
T 3o7a_A 13 FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 51 (52)
T ss_dssp CTTCCEEECTTTCCEEETTTTTCCGGGCCSSCCCHHHHT
T ss_pred CCCCCEEEcCCCCccccccccCCCcccCCCcEECcCCCC
Confidence 3334678999999999999984 1 24888864
No 92
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=56.86 E-value=9.4 Score=31.04 Aligned_cols=36 Identities=25% Similarity=0.720 Sum_probs=27.0
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccccC
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQL 44 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~~ 44 (696)
.-.|++|.+ .|+-+- ..-.+|..|+-..|+.|....
T Consensus 34 pt~C~~C~~--~lwGl~-kqG~~C~~C~~~~Hk~C~~~v 69 (77)
T 2enn_A 34 PTFCSVCHE--FVWGLN-KQGYQCRQCNAAIHKKCIDKV 69 (77)
T ss_dssp CEECSSSCC--EECCTT-CCEEECSSSCCEEESGGGSSC
T ss_pred CcCccccCh--hhcccc-ccccCcCCCCCcCCHhHHhhC
Confidence 446888854 566543 356899999999999999753
No 93
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=55.41 E-value=4 Score=31.60 Aligned_cols=47 Identities=19% Similarity=0.417 Sum_probs=29.5
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~ 52 (696)
..+.|.+|...- .=|-+......-..|+-.||..|.. ...||-|...
T Consensus 14 ~~~~C~IC~~~~-~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 65 (69)
T 2ea6_A 14 GTVSCPICMDGY-SEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKK 65 (69)
T ss_dssp CCCCCTTTCCCH-HHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCC
T ss_pred CCCCCcccCccc-cccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCc
Confidence 467899998741 1111111222445799999999984 4579999643
No 94
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=55.28 E-value=6.3 Score=32.20 Aligned_cols=43 Identities=21% Similarity=0.505 Sum_probs=31.6
Q ss_pred ccceecCCCCCeeeecCCCCeeecC--CCCceeeccccc---c-----------CCCccchhhhh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCN--QCGACFHTKCHS---Q-----------LPCKRCIRMRI 54 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~--~c~~~~h~~c~~---~-----------~~cp~c~r~~~ 54 (696)
...| +|+..+ ++ ..-.+|. .|..-||..|.. . -.||.|.+.+.
T Consensus 16 ~~~C-iC~~~~---~~--g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 16 KVRC-VCGNSL---ET--DSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCC-SSCCCC---CC--SCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CEEe-ECCCcC---CC--CCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 4567 788873 33 3668999 999999999973 1 14999987654
No 95
>1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1
Probab=55.19 E-value=9.6 Score=28.14 Aligned_cols=34 Identities=24% Similarity=0.581 Sum_probs=26.5
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeecc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTK 39 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~ 39 (696)
+-+.|..|++.+++|-.+. ....|..||.+|-..
T Consensus 4 ~~~~CP~C~~~~l~~d~~~-gelvC~~CG~v~~e~ 37 (50)
T 1pft_A 4 KQKVCPACESAELIYDPER-GEIVCAKCGYVIEEN 37 (50)
T ss_dssp SCCSCTTTSCCCEEEETTT-TEEEESSSCCBCCCC
T ss_pred ccEeCcCCCCcceEEcCCC-CeEECcccCCccccc
Confidence 4568999988888887773 668999999987543
No 96
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=54.46 E-value=9.2 Score=31.22 Aligned_cols=44 Identities=23% Similarity=0.480 Sum_probs=30.9
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc----------cCCCccchhhhh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS----------QLPCKRCIRMRI 54 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~----------~~~cp~c~r~~~ 54 (696)
+..| +|+.+.- +...-.+|..|..=||..|.. .-.||.|.+...
T Consensus 12 ~~~C-~C~~~~d----~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 12 PVYC-LCRQPYN----VNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCS-TTSCSCC----SSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred ccEE-EcCCccC----CCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 4456 7877531 124568999999999999973 124999987653
No 97
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding, DAG/PE-binding protein, diacylglycerol, phorbol ester, TCR, T-cell, structural genomics; NMR {Homo sapiens}
Probab=53.61 E-value=8.9 Score=29.99 Aligned_cols=35 Identities=23% Similarity=0.765 Sum_probs=25.9
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
.-.|+.|++ .|+-+- ....+|..|+-..|+.|...
T Consensus 23 pt~C~~C~~--~l~Gl~-~qg~~C~~C~~~~Hk~C~~~ 57 (65)
T 2enz_A 23 PTFCEHCGT--LLWGLA-RQGLKCDACGMNVHHRCQTK 57 (65)
T ss_dssp CCBCSSSCC--BCCCSS-SCSEEESSSCCEECTTTTTT
T ss_pred CcCchhcCh--hheecC-CcccccCCCCCccCHhHHhh
Confidence 446888855 455433 35689999999999999874
No 98
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=52.91 E-value=4.6 Score=32.97 Aligned_cols=27 Identities=30% Similarity=0.598 Sum_probs=20.1
Q ss_pred eeecCCCCceeeccccc-----cCCCccchhh
Q psy5925 26 VHRCNQCGACFHTKCHS-----QLPCKRCIRM 52 (696)
Q Consensus 26 ~~~c~~c~~~~h~~c~~-----~~~cp~c~r~ 52 (696)
...-..|+-+||..|.. +..||-|.+.
T Consensus 42 ~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~ 73 (81)
T 2ecl_A 42 VVVWGECNHSFHNCCMSLWVKQNNRCPLCQQD 73 (81)
T ss_dssp CEEEETTSCEEEHHHHHHHTTTCCBCTTTCCB
T ss_pred EEEeCCCCCccChHHHHHHHHhCCCCCCcCCC
Confidence 34445799999999974 4579999643
No 99
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=52.08 E-value=9.5 Score=33.13 Aligned_cols=33 Identities=30% Similarity=0.719 Sum_probs=25.7
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS 42 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~ 42 (696)
...+|.+|++..- .+.-..|..|...||..|..
T Consensus 6 ~~~~C~~C~~~g~-----~~~ll~C~~C~~~~H~~Cl~ 38 (111)
T 2ysm_A 6 SGANCAVCDSPGD-----LLDQFFCTTCGQHYHGMCLD 38 (111)
T ss_dssp CCSCBTTTCCCCC-----TTTSEECSSSCCEECTTTTT
T ss_pred CCCCCcCCCCCCC-----CcCCeECCCCCCCcChHHhC
Confidence 4468999998642 23457999999999999984
No 100
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=51.96 E-value=6.9 Score=30.88 Aligned_cols=45 Identities=16% Similarity=0.407 Sum_probs=30.2
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhhhhcc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRMRIRR 56 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~~~r~ 56 (696)
..+.|-+|.+.- . +...-..|+..||..|.. ...||-|...-...
T Consensus 14 ~~~~C~IC~~~~-----~--~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~ 63 (72)
T 2djb_A 14 PYILCSICKGYL-----I--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQT 63 (72)
T ss_dssp GGGSCTTTSSCC-----S--SCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred CCCCCCCCChHH-----H--CcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCcc
Confidence 457899997631 1 123345799999999974 45799997654443
No 101
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=50.50 E-value=9.4 Score=32.69 Aligned_cols=59 Identities=20% Similarity=0.353 Sum_probs=35.2
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc----c----CCCccchhhhhccccccceeeeehhHHHHH
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS----Q----LPCKRCIRMRIRRDSMKGIVDVKCFEESSL 73 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~----~----~~cp~c~r~~~r~~~~~~~~~~~~~~~~~l 73 (696)
.+.|.+|... |. +.+ . ..||..||..|.. . ..||-|...-....+.... .....+|.++
T Consensus 21 ~~~C~IC~~~-----~~-~p~-~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~~~~~~-~l~~~~~~~~ 87 (112)
T 1jm7_A 21 ILECPICLEL-----IK-EPV-S-TKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQEST-RFSQLVEELL 87 (112)
T ss_dssp HTSCSSSCCC-----CS-SCC-B-CTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTTCBCCC-SSSHHHHHHH
T ss_pred CCCCcccChh-----hc-CeE-E-CCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhhcCccH-HHHHHHHHHH
Confidence 4689999873 12 111 1 3699999999973 1 2699997655544443333 3344455544
No 102
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=49.66 E-value=3.5 Score=36.66 Aligned_cols=22 Identities=32% Similarity=0.590 Sum_probs=0.0
Q ss_pred CCCCceeeccccc-----cCCCccchh
Q psy5925 30 NQCGACFHTKCHS-----QLPCKRCIR 51 (696)
Q Consensus 30 ~~c~~~~h~~c~~-----~~~cp~c~r 51 (696)
..|+-.||..|.. ...||-|.+
T Consensus 82 ~~C~H~FH~~CI~~Wl~~~~~CP~Cr~ 108 (117)
T 4a0k_B 82 GVCNHAFHFHCISRWLKTRQVCPLDNR 108 (117)
T ss_dssp ---------------------------
T ss_pred CCcCceEcHHHHHHHHHcCCcCCCCCC
Confidence 5799999999974 357999954
No 103
>3saf_A Exosome component 10; exoribonuclease, RNA exosome, hydrolase; 2.50A {Homo sapiens} PDB: 3sag_A 3sah_A 2cpr_A
Probab=49.55 E-value=23 Score=38.50 Aligned_cols=93 Identities=13% Similarity=0.165 Sum_probs=60.8
Q ss_pred CCCEE-EecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehHHHHhhhcCCCCCCH
Q psy5925 370 DPDIL-IGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTF 448 (696)
Q Consensus 370 DPDII-vGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~~kl~sysL 448 (696)
||+|+ +|||. .+|+..|..+ +|+. +.| ++|+.-..+ .+....++|
T Consensus 180 dp~i~KV~H~~-k~Dl~~L~~~---~Gi~---------------------------~~~--~fDT~lAa~-lL~~~~~gL 225 (428)
T 3saf_A 180 DPAIVKVFHGA-DSDIEWLQKD---FGLY---------------------------VVN--MFDTHQAAR-LLNLGRHSL 225 (428)
T ss_dssp CTTSEEEESSC-HHHHHHHHHH---HCCC---------------------------CSS--EEEHHHHHH-HTTCSCCSH
T ss_pred CCCceEEEeeh-HHHHHHHHHH---cCCC---------------------------cCc--eeechhHHH-HhCCCCCCH
Confidence 78874 99998 6788876543 3432 112 568765442 334456899
Q ss_pred HHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 449 ENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 449 ~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
++++.++||.....- .....| ...+ --...+.|+..||..+++|...|
T Consensus 226 ~~Lv~~~Lg~~l~K~--~~~sdW-~~rp--Ls~~q~~YAA~DA~~ll~L~~~L 273 (428)
T 3saf_A 226 DHLLKLYCNVDSNKQ--YQLADW-RIRP--LPEEMLSYARDDTHYLLYIYDKM 273 (428)
T ss_dssp HHHHHHHHCCCCCCT--TTTSCT-TCSS--CCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHcCCCCCcc--cccccc-ccCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998754321 122223 2222 11566899999999999999887
No 104
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=49.25 E-value=2 Score=37.44 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=19.9
Q ss_pred eecCCCCceeeccccc-----cCCCccchhh
Q psy5925 27 HRCNQCGACFHTKCHS-----QLPCKRCIRM 52 (696)
Q Consensus 27 ~~c~~c~~~~h~~c~~-----~~~cp~c~r~ 52 (696)
..-..|+..||..|.. ...||-|.+.
T Consensus 68 ~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~ 98 (106)
T 3dpl_R 68 VAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98 (106)
T ss_dssp EEEETTSCEEEHHHHHHHHTTCSBCSSSCSB
T ss_pred EeecccCcEECHHHHHHHHHcCCcCcCCCCc
Confidence 3446799999999974 4579999653
No 105
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=48.59 E-value=6 Score=31.99 Aligned_cols=36 Identities=25% Similarity=0.603 Sum_probs=25.8
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccccC
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQL 44 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~~ 44 (696)
.-.|++|.+ .|+=+- ..-.+|..|+-..|+.|....
T Consensus 28 pt~C~~C~~--~lwGl~-kqG~~C~~C~~~~Hk~C~~~v 63 (74)
T 2db6_A 28 PKFCDVCAR--MIVLNN-KFGLRCKNCKTNIHEHCQSYV 63 (74)
T ss_dssp CEECSSSCC--EECHHH-HEEEEESSSCCEECTTTTGGG
T ss_pred CcCchhcCh--hhcccc-CCccccCCCCCccChhHHhhC
Confidence 346888854 454322 356899999999999999753
No 106
>3pv8_A DNA polymerase I; DNA polymerase I, protein-DNA complex, thymine-adenine, CLOS conformation; HET: DNA 2DT D3T; 1.52A {Geobacillus kaustophilus} PDB: 3px0_A* 3px4_A* 3px6_A* 3thv_A* 3ti0_A* 4dse_A* 4dsf_A* 4ds4_A* 4dqp_A* 4dqi_A* 4ds5_A* 4e0d_A* 4dqr_A* 4dqq_A* 3tan_A* 3tap_A* 3taq_A* 3tar_A* 4dqs_A* 3hp6_A* ...
Probab=48.24 E-value=53 Score=37.17 Aligned_cols=105 Identities=12% Similarity=-0.022 Sum_probs=65.4
Q ss_pred HHHHHHHHHhCCC-EEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehHHHHh
Q psy5925 360 SIFIENVRQWDPD-ILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR 438 (696)
Q Consensus 360 ~~f~~~I~~~DPD-IIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r 438 (696)
..|..++. ||+ ..+|||. .||+..|. .+|+.. .| .++|+.-...
T Consensus 71 ~~Lk~lLe--d~~i~KV~hn~-K~Dl~vL~----~~Gi~l---------------------------~g-~~fDTmLAAY 115 (592)
T 3pv8_A 71 PQFVAWLG--DETKKKSMFDS-KRAAVALK----WKGIEL---------------------------CG-VSFDLLLAAY 115 (592)
T ss_dssp HHHHHHHT--CTTSEEEESSH-HHHHHHHH----HTTCCC---------------------------CC-EEEEHHHHHH
T ss_pred HHHHHHHh--CCCCeEEEech-HHHHHHHH----HcCCCC---------------------------CC-ccchHHHHHH
Confidence 34555554 566 4789998 68887763 245432 22 4678765432
Q ss_pred hh-cCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 439 HE-VNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 439 ~~-~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
=- -...+|+|++++..+||...+. .+++..|-.............|+..|+..+.+|..++
T Consensus 116 LL~p~~~~~~L~~La~~yLg~~l~~--~ee~~gkg~~~~~~~~e~~~~YAa~DA~~l~~L~~~L 177 (592)
T 3pv8_A 116 LLDPAQGVDDVAAAAKMKQYEAVRP--DEAVYGKGAKRAVPDEPVLAEHLVRKAAAIWELERPF 177 (592)
T ss_dssp HHCGGGCCCSHHHHHGGGTCCSSCC--HHHHHCSGGGCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HcCCCCCCCCHHHHHHHHcCCCCch--HHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 21 1346899999999999876543 3444433211111112567899999999999888765
No 107
>3uej_A NPKC-delta, protein kinase C delta type; proteine kinase cdelta, phosphotransferase, anesthetic bindi metal binding protein; 1.30A {Mus musculus} PDB: 3ugi_A 3ugl_A 3uey_A 3ugd_A 3uff_A 1ptq_A 1ptr_A*
Probab=48.19 E-value=8 Score=30.24 Aligned_cols=36 Identities=25% Similarity=0.716 Sum_probs=26.5
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
+.-.|+.|++ .|+-+- ....+|..|+-..|+.|...
T Consensus 19 ~pt~C~~C~~--~l~Gl~-~qg~~C~~C~~~~Hk~C~~~ 54 (65)
T 3uej_A 19 SPTFCDHCGS--LLWGLV-KQGLKCEDCGMNVHHKCREK 54 (65)
T ss_dssp SCCBCTTTCC--BCCSSS-SCEEEETTTCCEECHHHHTT
T ss_pred CCCcccccCh--hhhccC-ceeeECCCCCCeEchhHhhh
Confidence 3446888866 454332 35689999999999999874
No 108
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain, zinc-binding domain, endocytosis/exocytosis,signaling protein complex; NMR {Rattus norvegicus}
Probab=47.27 E-value=8.8 Score=30.17 Aligned_cols=36 Identities=25% Similarity=0.628 Sum_probs=26.4
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
+.-.|+.|.+ .|+-.- ....+|..|+-..|+.|...
T Consensus 23 ~pt~C~~C~~--~l~Gl~-~qg~~C~~C~~~~Hk~C~~~ 58 (66)
T 1y8f_A 23 TPTYCYECEG--LLWGIA-RQGMRCTECGVKCHEKCQDL 58 (66)
T ss_dssp SCCCCTTTCC--CCCSSC-CEEEEETTTCCEECTTHHHH
T ss_pred CCcChhhcCh--hhcccC-cceeEcCCCCCeeCHHHHhh
Confidence 3456888865 454432 35689999999999999864
No 109
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=47.19 E-value=13 Score=32.48 Aligned_cols=40 Identities=23% Similarity=0.655 Sum_probs=28.5
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeecccccc---------CCCccchh
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ---------LPCKRCIR 51 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~---------~~cp~c~r 51 (696)
+|.+|+... .+.+....|..|...||..|... -.||.|..
T Consensus 63 ~C~vC~~~~----~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 63 TCSSCRDQG----KNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CBTTTCCCC----CTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred ccccccCcC----CCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 577887542 12346778999999999999841 24888853
No 110
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=46.94 E-value=7.9 Score=30.43 Aligned_cols=41 Identities=17% Similarity=0.282 Sum_probs=27.9
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRMR 53 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~~ 53 (696)
..+.|-+|...- . +...- .|+..||..|.. ...||-|...-
T Consensus 14 ~~~~C~IC~~~~-----~--~~~~~-~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (71)
T 2d8t_A 14 TVPECAICLQTC-----V--HPVSL-PCKHVFCYLCVKGASWLGKRCALCRQEI 59 (71)
T ss_dssp SCCBCSSSSSBC-----S--SEEEE-TTTEEEEHHHHHHCTTCSSBCSSSCCBC
T ss_pred CCCCCccCCccc-----C--CCEEc-cCCCHHHHHHHHHHHHCCCcCcCcCchh
Confidence 457899998641 1 22222 599999999974 35799996543
No 111
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=46.94 E-value=7.9 Score=31.55 Aligned_cols=45 Identities=22% Similarity=0.544 Sum_probs=30.9
Q ss_pred CccceecCCCCCeeeecCCC--CeeecCCCCceeeccccc------cCCCccchhhhhc
Q psy5925 5 RGFICELCNSEEVIFPWQLS--SVHRCNQCGACFHTKCHS------QLPCKRCIRMRIR 55 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~--~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~~r 55 (696)
..+.|.+|-+ |+... ....| .||-.|++.|+. ...||-|.+.-..
T Consensus 10 ~~~~CpICle-----~~~~~d~~~~p~-~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~ 62 (78)
T 1e4u_A 10 DPVECPLCME-----PLEIDDINFFPC-TCGYQICRFCWHRIRTDENGLCPACRKPYPE 62 (78)
T ss_dssp CCCBCTTTCC-----BCCTTTTTCCSS-TTSCCCCHHHHHHHTTSSCSBCTTTCCBCSS
T ss_pred cCCcCCccCc-----cCcccccccccc-CCCCCcCHHHHHHHHhcCCCCCCCCCCccCC
Confidence 4578999988 66532 22234 689999999973 2479999765443
No 112
>4b6d_A RAC GTPase-activating protein 1; signaling protein, cytokinesis, plasma membrane, phospholipi centralspindlin, spindle midzone, central spindle; 2.20A {Homo sapiens}
Probab=46.85 E-value=15 Score=28.57 Aligned_cols=38 Identities=26% Similarity=0.649 Sum_probs=27.2
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeecccccc--CCCc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ--LPCK 47 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~--~~cp 47 (696)
+=.|..| .+.|- |- ....+|.+|+.+.|+.|... ..|.
T Consensus 19 ~~~C~~C--g~~i~-~g-kq~~kC~dC~~~cH~~C~~~~~~~C~ 58 (61)
T 4b6d_A 19 PESCVPC--GKRIK-FG-KLSLKCRDCRVVSHPECRDRCPLPCI 58 (61)
T ss_dssp CEECTTT--CCEEC-TT-CEEEEESSSSCEECGGGGGGSCSSCC
T ss_pred Ccccccc--cCEEE-Ee-eEeeECCCCCCeEchhHhhcCCCCCC
Confidence 4457777 34553 55 46789999999999999863 3453
No 113
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=46.55 E-value=7.6 Score=33.68 Aligned_cols=29 Identities=24% Similarity=0.666 Sum_probs=19.0
Q ss_pred eecCCCCceeeccccccCCCccchhhhhc
Q psy5925 27 HRCNQCGACFHTKCHSQLPCKRCIRMRIR 55 (696)
Q Consensus 27 ~~c~~c~~~~h~~c~~~~~cp~c~r~~~r 55 (696)
.+|..||-.|...=.....||+|......
T Consensus 68 ~~C~~CG~~F~~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 68 AQCRKCGFVFKAEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp CBBTTTCCBCCCCSSCCSSCSSSCCCCBC
T ss_pred cChhhCcCeecccCCCCCCCcCCCCCccC
Confidence 37999999991111124679999765443
No 114
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=46.01 E-value=5.3 Score=31.94 Aligned_cols=42 Identities=17% Similarity=0.366 Sum_probs=28.0
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------------cCCCccchhhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------------QLPCKRCIRMRI 54 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------------~~~cp~c~r~~~ 54 (696)
..+.|.+|... |.. ... -.|+..||+.|.. ...||-|...-.
T Consensus 11 ~~~~C~IC~~~-----~~~--p~~-l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLEL-----LTE--PLS-LDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEE-----CSS--CCC-CSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCcc-----cCC--eeE-CCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 46789999763 221 112 2699999999975 246999966544
No 115
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=45.30 E-value=12 Score=27.26 Aligned_cols=36 Identities=25% Similarity=0.716 Sum_probs=26.3
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
++=.|+.|++ .|+-+- ....+|..|+-..|+.|...
T Consensus 10 ~pt~C~~C~~--~l~g~~-~qg~~C~~C~~~~H~~C~~~ 45 (50)
T 1ptq_A 10 SPTFCDHCGS--LLWGLV-KQGLKCEDCGMNVHHKCREK 45 (50)
T ss_dssp SCCBCTTTCC--BCCSSS-SCEEEETTTCCEECHHHHTT
T ss_pred CCCCcCCCCc--eeeccC-CccCEeCCCCCeECHHHhhh
Confidence 3456888854 454332 46789999999999999864
No 116
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=45.10 E-value=17 Score=31.05 Aligned_cols=43 Identities=19% Similarity=0.328 Sum_probs=30.1
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRMRI 54 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~~~ 54 (696)
..+.|.+|.+.- .+......||..||..|.. +..||-|...-.
T Consensus 14 ~~~~C~IC~~~~-------~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 61 (108)
T 2ckl_A 14 PHLMCVLCGGYF-------IDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVH 61 (108)
T ss_dssp GGTBCTTTSSBC-------SSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSC
T ss_pred CcCCCccCChHH-------hCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccc
Confidence 357899997631 1234456899999999974 357999966543
No 117
>1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A
Probab=44.89 E-value=13 Score=28.66 Aligned_cols=31 Identities=13% Similarity=0.346 Sum_probs=24.6
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeecc
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTK 39 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~ 39 (696)
.|.-|++.+++|=+.. ....|..||.|+-..
T Consensus 13 ~Cp~C~~~~lv~D~~~-ge~vC~~CGlVl~e~ 43 (58)
T 1dl6_A 13 TCPNHPDAILVEDYRA-GDMICPECGLVVGDR 43 (58)
T ss_dssp SBTTBSSSCCEECSSS-CCEECTTTCCEECCS
T ss_pred cCcCCCCCceeEeCCC-CeEEeCCCCCEEecc
Confidence 6999998888887764 667899999987543
No 118
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=44.22 E-value=13 Score=28.23 Aligned_cols=37 Identities=32% Similarity=0.741 Sum_probs=24.7
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc--------cCCCccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--------QLPCKRC 49 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~--------~~~cp~c 49 (696)
..+.|.+|.+. |. +.+ .- .|+-.||+.|.. ...||-|
T Consensus 19 ~~~~C~IC~~~-----~~-~p~-~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDI-----LQ-KPV-TI-DCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSB-----CS-SCE-EC-TTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCch-----hC-CeE-Ee-CCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 46789999763 22 122 22 799999999973 1258877
No 119
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=43.94 E-value=11 Score=29.89 Aligned_cols=28 Identities=32% Similarity=0.740 Sum_probs=24.8
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCcee
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACF 36 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~ 36 (696)
.|.-|.+.+++|.--. ++..|..|+++.
T Consensus 9 KCp~C~niq~VFShA~-tvV~C~~Cg~~L 36 (66)
T 1qxf_A 9 KCPDCEHEQVIFDHPS-TIVKCIICGRTV 36 (66)
T ss_dssp ECTTTCCEEEEESSCS-SCEECSSSCCEE
T ss_pred ECCCCCCceEEEecCc-eEEEcccCCCEE
Confidence 5888999999999884 889999999886
No 120
>1yt3_A Ribonuclease D, RNAse D; exoribonuclease, exonuclease, hydrolase, tRNA processing, hydrolase,translation; 1.60A {Escherichia coli} SCOP: a.60.8.3 a.60.8.3 c.55.3.5
Probab=43.04 E-value=48 Score=35.02 Aligned_cols=101 Identities=16% Similarity=0.052 Sum_probs=62.1
Q ss_pred HHHHHHHHhCCCE-EEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehHHHHhh
Q psy5925 361 IFIENVRQWDPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 439 (696)
Q Consensus 361 ~f~~~I~~~DPDI-IvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~ 439 (696)
.|.+++. ||+| .+|||. .+|+..|... +|+.. . .++|+.-...-
T Consensus 65 ~L~~ll~--d~~i~Kv~h~~-k~Dl~~L~~~---~Gi~~---------------------------~--~~fDt~lAa~l 109 (375)
T 1yt3_A 65 PLKAILR--DPSITKFLHAG-SEDLEVFLNV---FGELP---------------------------Q--PLIDTQILAAF 109 (375)
T ss_dssp HHHHHHH--CTTSEEEESSC-HHHHHHHHHH---HSSCC---------------------------S--SEEEHHHHHHH
T ss_pred HHHHHHc--CCCceEEEeeH-HHHHHHHHHH---cCCCC---------------------------C--cEEEcHHHHHH
Confidence 3444443 6776 699998 5788877542 34321 1 25687655432
Q ss_pred hcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 440 EVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 440 ~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
--.-.+|+|++++.++||..... ....++| ...+ -....+.|+..|+..+.+|..++
T Consensus 110 L~~~~~~~L~~L~~~~l~~~l~K--~~~~sdw-~~rp--L~~~q~~YAa~Da~~l~~L~~~L 166 (375)
T 1yt3_A 110 CGRPMSWGFASMVEEYSGVTLDK--SESRTDW-LARP--LTERQCEYAAADVWYLLPITAKL 166 (375)
T ss_dssp TTCCTTCCHHHHHHHHHCCCCCC--TTTTSCT-TSSS--CCHHHHHHHHHHHHTHHHHHHHH
T ss_pred cCCCCChhHHHHHHHHcCCCCCC--CcccCCC-CCCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 11224899999999999865331 1122233 2221 11357899999999999998877
No 121
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.89 E-value=8 Score=30.16 Aligned_cols=39 Identities=21% Similarity=0.422 Sum_probs=27.6
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~ 52 (696)
..+.|-+|.+.- . . .-..|+..||..|.. ...||-|...
T Consensus 14 ~~~~C~IC~~~~-----~--~--~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~ 57 (70)
T 2ecn_A 14 DEEECCICMDGR-----A--D--LILPCAHSFCQKCIDKWSDRHRNCPICRLQ 57 (70)
T ss_dssp CCCCCSSSCCSC-----C--S--EEETTTEEECHHHHHHSSCCCSSCHHHHHC
T ss_pred CCCCCeeCCcCc-----c--C--cccCCCCcccHHHHHHHHHCcCcCCCcCCc
Confidence 467899998752 1 1 234589999999974 3679999543
No 122
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.53 E-value=12 Score=29.36 Aligned_cols=28 Identities=32% Similarity=0.781 Sum_probs=24.6
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCcee
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACF 36 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~ 36 (696)
.|.-|.+.++||.-- .++..|..|+++.
T Consensus 17 kCp~C~~~q~VFSha-~t~V~C~~Cgt~L 44 (63)
T 3j20_W 17 KCIDCGNEQIVFSHP-ATKVRCLICGATL 44 (63)
T ss_dssp ECSSSCCEEEEESSC-SSCEECSSSCCEE
T ss_pred ECCCCCCeeEEEecC-CeEEEccCcCCEE
Confidence 488899999999988 4889999999886
No 123
>1gh9_A 8.3 kDa protein (gene MTH1184); beta+alpha complex structure, structural genomics, PSI, protein structure initiative; NMR {Methanothermobacterthermautotrophicus} SCOP: g.41.6.1
Probab=42.03 E-value=13 Score=29.91 Aligned_cols=9 Identities=44% Similarity=1.457 Sum_probs=4.9
Q ss_pred eeecCCCCce
Q psy5925 26 VHRCNQCGAC 35 (696)
Q Consensus 26 ~~~c~~c~~~ 35 (696)
+.+|+ |++.
T Consensus 4 vv~C~-C~~~ 12 (71)
T 1gh9_A 4 IFRCD-CGRA 12 (71)
T ss_dssp EEEET-TSCC
T ss_pred EEECC-CCCE
Confidence 34555 5555
No 124
>2e6m_A Werner syndrome ATP-dependent helicase homolog; APO form, hydrolase; 2.00A {Mus musculus} PDB: 2e6l_A 2fby_A 2fbv_A 2fbx_A 2fbt_A 2fc0_A*
Probab=41.81 E-value=34 Score=32.62 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=59.1
Q ss_pred CCCE-EEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehHHHHhhhcC-CCCCC
Q psy5925 370 DPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVN-LQSYT 447 (696)
Q Consensus 370 DPDI-IvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~~k-l~sys 447 (696)
||+| .+|||+. +|+..|... +|+. +.| ++|+-.++..-+. -.+++
T Consensus 94 d~~i~Kv~~~~k-~D~~~L~~~---~gi~---------------------------~~~--~fDlt~lAayll~~~~~~~ 140 (208)
T 2e6m_A 94 NKSIKKAGVGIE-GDQWKLLRD---FDVK---------------------------LES--FVELTDVANEKLKCAETWS 140 (208)
T ss_dssp CTTSEEEESSHH-HHHHHHHHH---HCCC---------------------------CCS--EEEHHHHHHHHTTCCCCCC
T ss_pred CCCceEEEEeeH-HHHHHHHHH---CCCC---------------------------CCC--EEEHHHHHHHHccCCCChh
Confidence 6765 5899984 577665432 3432 234 6785444443332 36899
Q ss_pred HHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 448 FENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 448 L~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
|++++..+||.....-....+..| ...+ -....+.|+..|+..+.+|..++
T Consensus 141 L~~L~~~~l~~~~~K~k~~~~s~W-~~~~--L~~~q~~YAa~Da~~~~~L~~~L 191 (208)
T 2e6m_A 141 LNGLVKHVLGKQLLKDKSIRCSNW-SNFP--LTEDQKLYAATDAYAGLIIYQKL 191 (208)
T ss_dssp HHHHHHHHHSCBCCCCHHHHTSCT-TSSS--CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCcCCCCCeeeCCC-CCCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998865421101122223 2212 12457899999999999999887
No 125
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=41.76 E-value=10 Score=34.24 Aligned_cols=37 Identities=19% Similarity=0.629 Sum_probs=25.2
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIR 51 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r 51 (696)
+.|.+|... |. +... ..||..||..|.. +..||-|-.
T Consensus 54 ~~C~iC~~~-----~~--~~~~-~~CgH~fc~~Ci~~~~~~~~~CP~Cr~ 95 (138)
T 4ayc_A 54 LQCIICSEY-----FI--EAVT-LNCAHSFCSYCINEWMKRKIECPICRK 95 (138)
T ss_dssp SBCTTTCSB-----CS--SEEE-ETTSCEEEHHHHHHHTTTCSBCTTTCC
T ss_pred CCCcccCcc-----cC--CceE-CCCCCCccHHHHHHHHHcCCcCCCCCC
Confidence 579999863 11 1222 2599999999963 457999944
No 126
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=41.61 E-value=16 Score=29.32 Aligned_cols=32 Identities=31% Similarity=0.750 Sum_probs=24.2
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
.-.|..|++. | +. ...+|..|+-..|+.|...
T Consensus 35 pt~C~~C~~~--l--~~--qG~kC~~C~~~cHkkC~~~ 66 (72)
T 2fnf_X 35 PGWCDLCGRE--V--LR--QALRCANCKFTCHSECRSL 66 (72)
T ss_dssp CCBCTTTSSB--C--SS--CCEECTTSSCEECTGGGGG
T ss_pred CcchhhhhHH--H--Hh--CcCccCCCCCeechhhhcc
Confidence 3457888653 4 43 5589999999999999864
No 127
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.98 E-value=14 Score=29.71 Aligned_cols=41 Identities=22% Similarity=0.430 Sum_probs=28.2
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRMR 53 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~~ 53 (696)
..+.|.+|...- . +... ..|+..||..|.. ...||-|...-
T Consensus 14 ~~~~C~IC~~~~-----~--~p~~-~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~ 59 (81)
T 2csy_A 14 IPFRCFICRQAF-----Q--NPVV-TKCRHYFCESCALEHFRATPRCYICDQPT 59 (81)
T ss_dssp CCSBCSSSCSBC-----C--SEEE-CTTSCEEEHHHHHHHHHHCSBCSSSCCBC
T ss_pred CCCCCcCCCchh-----c--CeeE-ccCCCHhHHHHHHHHHHCCCcCCCcCccc
Confidence 467899997641 1 1112 4799999999984 35799996554
No 128
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal transduction, apoptosis, cysteine rich domain, metal binding protein; NMR {Mus musculus}
Probab=40.72 E-value=14 Score=28.32 Aligned_cols=31 Identities=29% Similarity=0.732 Sum_probs=23.4
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeecccccc
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~ 43 (696)
-.|..|++ .| +. ...+|..|+-..|+.|...
T Consensus 23 t~C~~C~~--~i--~k--qg~kC~~C~~~cH~kC~~~ 53 (59)
T 1rfh_A 23 GWCDLCGR--EV--LR--QALRCANCKFTCHSECRSL 53 (59)
T ss_dssp EECTTTCS--EE--CS--CCEECTTTSCEECHHHHTT
T ss_pred eEchhcch--hh--hh--CccEeCCCCCeEehhhhhh
Confidence 35777744 45 43 5589999999999999864
No 129
>2lcq_A Putative toxin VAPC6; PIN domain, Zn ribbon domain, ribosome biogenesis, metal BIN protein; NMR {Pyrococcus horikoshii}
Probab=40.39 E-value=10 Score=35.37 Aligned_cols=26 Identities=27% Similarity=0.405 Sum_probs=19.4
Q ss_pred eeecCCCCceeeccccccCCCccchhh
Q psy5925 26 VHRCNQCGACFHTKCHSQLPCKRCIRM 52 (696)
Q Consensus 26 ~~~c~~c~~~~h~~c~~~~~cp~c~r~ 52 (696)
..+|.+|+..|-.. .....||.|.-.
T Consensus 132 ~y~C~~Cg~~~~~~-~~~~~Cp~CG~~ 157 (165)
T 2lcq_A 132 RYVCIGCGRKFSTL-PPGGVCPDCGSK 157 (165)
T ss_dssp CEEESSSCCEESSC-CGGGBCTTTCCB
T ss_pred EEECCCCCCcccCC-CCCCcCCCCCCc
Confidence 46899999999754 223579999854
No 130
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.33 E-value=10 Score=30.44 Aligned_cols=43 Identities=19% Similarity=0.417 Sum_probs=28.7
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----------cCCCccchhhhhc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----------QLPCKRCIRMRIR 55 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----------~~~cp~c~r~~~r 55 (696)
..+.|.+|...- . +... ..|+..||..|+. ...||.|...-..
T Consensus 18 ~~~~C~IC~~~~-----~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELL-----T--QPLS-LDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCC-----S--SCBC-CSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCccc-----C--Ccee-CCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 467899998741 1 1111 2699999999973 3469999765443
No 131
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=39.60 E-value=17 Score=28.83 Aligned_cols=41 Identities=17% Similarity=0.539 Sum_probs=27.9
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----c--CCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----Q--LPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~--~~cp~c~r~ 52 (696)
..+.|-+|... |. +...-..|+..||+.|.. . ..||-|.+.
T Consensus 14 ~~~~C~IC~~~-----~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 61 (74)
T 2yur_A 14 DELLCLICKDI-----MT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 61 (74)
T ss_dssp GGGSCSSSCCC-----CT--TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCS
T ss_pred CCCCCcCCChH-----Hh--CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCc
Confidence 45789999653 12 223344599999999973 2 479999763
No 132
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=39.36 E-value=13 Score=31.19 Aligned_cols=52 Identities=23% Similarity=0.464 Sum_probs=33.8
Q ss_pred CCccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccchhhhhcc
Q psy5925 4 ARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCIRMRIRR 56 (696)
Q Consensus 4 ~~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~~r~ 56 (696)
..|-||++|...-=+=+ +-+--+-|.+|.--.=+.|+. ...||+|.-+-.|.
T Consensus 14 ~~~qiCqiCGD~VG~~~-~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 14 LDGQFCEICGDQIGLTV-EGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp CSSCBCSSSCCBCCBCS-SSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred cCCCccccccCccccCC-CCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 35679999988521111 112234688888777788884 46799998776653
No 133
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=39.29 E-value=8.2 Score=29.79 Aligned_cols=42 Identities=24% Similarity=0.592 Sum_probs=27.7
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccchhhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCIRMRI 54 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~~ 54 (696)
..+.|.+|.+. |. +.+ . ..|+..||+.|.. ...||-|...-.
T Consensus 14 ~~~~C~IC~~~-----~~-~p~-~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (66)
T 2ecy_A 14 DKYKCEKCHLV-----LC-SPK-Q-TECGHRFCESCMAALLSSSSPKCTACQESIV 61 (66)
T ss_dssp CCEECTTTCCE-----ES-SCC-C-CSSSCCCCHHHHHHHHTTSSCCCTTTCCCCC
T ss_pred cCCCCCCCChH-----hc-Cee-E-CCCCCHHHHHHHHHHHHhCcCCCCCCCcCCC
Confidence 45789999753 11 111 1 3799999999974 246999965533
No 134
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=39.05 E-value=8.3 Score=31.00 Aligned_cols=42 Identities=17% Similarity=0.389 Sum_probs=28.1
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----------cCCCccchhhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----------QLPCKRCIRMRI 54 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----------~~~cp~c~r~~~ 54 (696)
..+.|.+|... |. +... ..|+..||..|.. ...||.|...-.
T Consensus 18 ~~~~C~IC~~~-----~~--~p~~-~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLEL-----LK--EPVS-ADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSC-----CS--SCEE-CTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChh-----hC--ccee-CCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 56889999764 11 1112 2599999999973 246999966543
No 135
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=38.66 E-value=14 Score=30.47 Aligned_cols=28 Identities=18% Similarity=0.551 Sum_probs=24.8
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCcee
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACF 36 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~ 36 (696)
.|.-|.+.++||.-- .+++.|..|+++.
T Consensus 36 kCp~C~~~q~VFSha-~t~V~C~~Cg~~L 63 (82)
T 3u5c_b 36 KCPGCLNITTVFSHA-QTAVTCESCSTIL 63 (82)
T ss_dssp ECTTSCSCEEEESBC-SSCCCCSSSCCCC
T ss_pred ECCCCCCeeEEEecC-CeEEEccccCCEE
Confidence 488899999999988 4889999999885
No 136
>2hbj_A Exosome complex exonuclease RRP6; RNA metabolism, RNA surveillance, RNA processing, hydrolase, gene regulation; 2.10A {Saccharomyces cerevisiae} SCOP: a.60.8.4 c.55.3.5 PDB: 2hbk_A 2hbl_A* 2hbm_A*
Probab=38.42 E-value=48 Score=35.61 Aligned_cols=93 Identities=14% Similarity=0.193 Sum_probs=60.4
Q ss_pred CCCE-EEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehHHHHhhhcCCCCCCH
Q psy5925 370 DPDI-LIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTF 448 (696)
Q Consensus 370 DPDI-IvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~~~kl~sysL 448 (696)
||+| -+|||. .+|+..|... +|+. +.| ++|+.-..+ .+...+++|
T Consensus 157 d~~i~KV~h~~-k~Dl~~L~~~---~Gi~---------------------------~~~--~fDt~lAa~-LL~~~~~~L 202 (410)
T 2hbj_A 157 NPSIVKVFHGA-FMDIIWLQRD---LGLY---------------------------VVG--LFDTYHASK-AIGLPRHSL 202 (410)
T ss_dssp CTTSEEEESSC-HHHHHHHHHH---HCCC---------------------------CSS--EEEHHHHHH-HHTCSCCSH
T ss_pred CCCceEEEEeh-HHHHHHHHHH---cCCC---------------------------cCC--EEEcHHHHH-HhCCCccCH
Confidence 6776 599998 5688777543 3432 234 678875443 334457999
Q ss_pred HHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 449 ENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 449 ~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
..++..+||..... ......| ...+ -....+.|+..||..+++|..+|
T Consensus 203 ~~L~~~~lg~~l~K--~~~~sdW-~~rp--L~~~q~~YAa~Da~~ll~L~~~L 250 (410)
T 2hbj_A 203 AYLLENFANFKTSK--KYQLADW-RIRP--LSKPMTAAARADTHFLLNIYDQL 250 (410)
T ss_dssp HHHHHHHSCCCCCC--TTTTSCT-TCSS--CCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHcCCCCCc--cccccCC-CCCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998754321 1122233 2222 11367899999999999999887
No 137
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=37.99 E-value=25 Score=30.55 Aligned_cols=40 Identities=18% Similarity=0.443 Sum_probs=26.8
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----c-CCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----Q-LPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~-~~cp~c~r~ 52 (696)
..+.|.+|... |. ..... .||-.|++.|.. + ..||-|...
T Consensus 17 ~~~~C~IC~~~-----~~--~p~~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~ 62 (118)
T 3hct_A 17 SKYECPICLMA-----LR--EAVQT-PCGHRFCKACIIKSIRDAGHKCPVDNEI 62 (118)
T ss_dssp GGGBCTTTCSB-----CS--SEEEC-TTSCEEEHHHHHHHHHHHCSBCTTTCCB
T ss_pred CCCCCCcCChh-----hc--CeEEC-CcCChhhHHHHHHHHhhCCCCCCCCCCC
Confidence 35789999853 11 11232 699999999984 2 379999443
No 138
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding, complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A {Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Probab=37.97 E-value=8.3 Score=41.28 Aligned_cols=26 Identities=15% Similarity=0.363 Sum_probs=13.4
Q ss_pred eeehhHHHHHHhhhCCCCCCCCCccCC
Q psy5925 64 DVKCFEESSLERSMKPDDRPSPTRKNK 90 (696)
Q Consensus 64 ~~~~~~~~~l~~~~~~~~~~~p~~~~~ 90 (696)
+.+++ |++|+|+|+++|+++|++...
T Consensus 358 q~~~~-~~lll~~~~~~~~i~P~~~~~ 383 (388)
T 1noy_A 358 PIKTW-DAIIFNSLKGEHKVIPQQGSH 383 (388)
T ss_dssp HHHHH-HHHHHHHTTCC----------
T ss_pred cHHHH-HHHHHHHHHhCCEEcccCCcc
Confidence 45666 779999999999999998754
No 139
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=37.56 E-value=15 Score=30.29 Aligned_cols=28 Identities=29% Similarity=0.667 Sum_probs=25.0
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCcee
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACF 36 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~ 36 (696)
.|.-|.+.++||.-- .+++.|..|+++.
T Consensus 34 kCp~C~n~q~VFShA-~t~V~C~~Cg~~L 61 (81)
T 2xzm_6 34 KCAQCQNIQMIFSNA-QSTIICEKCSAIL 61 (81)
T ss_dssp ECSSSCCEEEEETTC-SSCEECSSSCCEE
T ss_pred ECCCCCCeeEEEecC-ccEEEccCCCCEE
Confidence 588899999999987 5899999999986
No 140
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=37.52 E-value=15 Score=30.51 Aligned_cols=33 Identities=18% Similarity=0.413 Sum_probs=25.3
Q ss_pred cceecCCCCCeeeecCCCC--eeecCCCCceeeccccc
Q psy5925 7 FICELCNSEEVIFPWQLSS--VHRCNQCGACFHTKCHS 42 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~--~~~c~~c~~~~h~~c~~ 42 (696)
=.|+.|++ .|+-+- .- ..+|..|+-..|+.|..
T Consensus 36 T~Cd~C~~--~lWGl~-kqp~G~~C~~C~~~~HkrC~~ 70 (84)
T 2row_A 36 TNCEACMK--PLWHMF-KPPPALECRRCHIKCHKDHMD 70 (84)
T ss_dssp EECSSSSS--EECCSS-SCCCEEEESSSCCEEEHHHHH
T ss_pred cchhhcCH--hhhccc-cCCCCCEecCCCCccchhHhC
Confidence 35888865 566553 23 78999999999999997
No 141
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=37.12 E-value=12 Score=32.91 Aligned_cols=42 Identities=19% Similarity=0.388 Sum_probs=27.7
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccchhhhhc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCIRMRIR 55 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~~r 55 (696)
.+.|.+|... |. +-+ . ..||..||+.|.. ...||-|...-..
T Consensus 52 ~~~C~IC~~~-----~~-~p~-~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 52 TFQCICCQEL-----VF-RPI-T-TVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HTBCTTTSSB-----CS-SEE-E-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCCCCcCChH-----Hc-CcE-E-eeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 3679999863 11 111 1 2799999999973 2379999765443
No 142
>3kqi_A GRC5, PHD finger protein 2; metal-binding, zinc-finger, histone-binding, NUC protein; HET: M3L; 1.78A {Homo sapiens} SCOP: g.50.1.2
Probab=36.64 E-value=18 Score=29.15 Aligned_cols=32 Identities=22% Similarity=0.617 Sum_probs=24.9
Q ss_pred CCeeecCCCCceeeccccc----------cCCCccchhhhhc
Q psy5925 24 SSVHRCNQCGACFHTKCHS----------QLPCKRCIRMRIR 55 (696)
Q Consensus 24 ~~~~~c~~c~~~~h~~c~~----------~~~cp~c~r~~~r 55 (696)
..-.+|..|..=||..|.. .-.||.|.+....
T Consensus 23 ~~MI~Cd~C~~WfH~~Cvg~~~~~~~~~~~~~C~~C~~~~~~ 64 (75)
T 3kqi_A 23 RFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGK 64 (75)
T ss_dssp SCEEECTTTCCEEEHHHHTCCTTTGGGBSSCCCHHHHHHHCC
T ss_pred CCEEEcCCCCCCEecccccccccccCCCCEEECCCCcccCCC
Confidence 4678999999999999973 1249999876543
No 143
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain, pleckst homology domain, C1 domain, guanine-nucleotide releasing FA metal-binding; 2.73A {Homo sapiens} PDB: 2d86_A
Probab=36.32 E-value=18 Score=40.85 Aligned_cols=43 Identities=23% Similarity=0.455 Sum_probs=28.2
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccccCCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~~~cp~c~r~ 52 (696)
+.-.|..|+.. ++=.- .--.+|..|+.++|+.|.... |.|.+-
T Consensus 528 ~~t~C~~C~~~--l~gl~-~qg~~C~~C~~~vHk~C~~~v--~~C~~~ 570 (587)
T 3ky9_A 528 ETTSCKACQML--LRGTF-YQGYRCHRCRASAHKECLGRV--PPCGRH 570 (587)
T ss_dssp SCCBCTTTCSB--CCSSS-CCEEEETTTCCEECSGGGGGS--CCC---
T ss_pred CCccccccccc--ccccc-cCCcCCCCCCCccchhhhhcC--CCCCCC
Confidence 34578888773 22211 245899999999999999764 456443
No 144
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=36.29 E-value=12 Score=39.59 Aligned_cols=32 Identities=19% Similarity=0.474 Sum_probs=22.5
Q ss_pred ceecCCCCCeeeecCCCCeeecC--CCCceeecccc
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCN--QCGACFHTKCH 41 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~--~c~~~~h~~c~ 41 (696)
.|-+|.+.-. +-.......|. .|+..||..|.
T Consensus 310 ECaICys~~l--~~g~lPdk~C~n~~C~h~FH~~CL 343 (381)
T 3k1l_B 310 RCNICFAYRL--DGGEVPLVSCDNAKCVLKCHAVCL 343 (381)
T ss_dssp SCSSSCCSSC--TTCCCCCBCCSCTTCCCCBCSGGG
T ss_pred cCcccceeec--CCCCCccccccCCccCCccchHHH
Confidence 5999998522 21222345787 89999999996
No 145
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.89 E-value=19 Score=29.19 Aligned_cols=44 Identities=16% Similarity=0.502 Sum_probs=28.4
Q ss_pred CccceecCCCCCeeeecCC-CCeeecCCCCceeeccccc-----c---CCCccchhhh
Q psy5925 5 RGFICELCNSEEVIFPWQL-SSVHRCNQCGACFHTKCHS-----Q---LPCKRCIRMR 53 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~-~~~~~c~~c~~~~h~~c~~-----~---~~cp~c~r~~ 53 (696)
..+.|.+|... |.. +....-..|+-.||..|+. . ..||-|.+.-
T Consensus 14 ~~~~C~IC~~~-----~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 66 (88)
T 2ct2_A 14 EVLECPICMES-----FTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKIT 66 (88)
T ss_dssp SCCBCTTTCCB-----CCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCB
T ss_pred CCCCCccCCcc-----ccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcc
Confidence 46789999763 121 1112223699999999974 2 4799997643
No 146
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=34.83 E-value=6.5 Score=34.49 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=24.7
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeecccccc--CCCccchhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ--LPCKRCIRM 52 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~--~~cp~c~r~ 52 (696)
=+||.|...+ |..|..++|..|+.. ..|..|..+
T Consensus 8 ~~C~~C~~~~------------C~~C~~c~~~~~~~~~~~~~~~c~~~ 43 (117)
T 4bbq_A 8 RKCKACVQGE------------CGVCHYCRDMKKFGGPGRMKQSCVLR 43 (117)
T ss_dssp SCSHHHHSCC------------CSCSHHHHHSGGGTSCCCSCCCCGGG
T ss_pred CcCcCcCCcC------------CCCCCCCcCCcccCCCCccccchhhe
Confidence 3677887642 999999999999963 346666543
No 147
>3irb_A Uncharacterized protein from DUF35 family; 13815350, protein with unknown function from DUF35 family, S genomics; 1.80A {Sulfolobus solfataricus}
Probab=34.60 E-value=14 Score=34.00 Aligned_cols=25 Identities=24% Similarity=0.673 Sum_probs=19.6
Q ss_pred eeecCCCCceeeccccccCCCccchhhh
Q psy5925 26 VHRCNQCGACFHTKCHSQLPCKRCIRMR 53 (696)
Q Consensus 26 ~~~c~~c~~~~h~~c~~~~~cp~c~r~~ 53 (696)
.++|..|++++|-. ...||+|....
T Consensus 47 ~~rC~~CG~~~~PP---r~~Cp~C~s~~ 71 (145)
T 3irb_A 47 GSKCSKCGRIFVPA---RSYCEHCFVKI 71 (145)
T ss_dssp EEECTTTCCEEESC---CSEETTTTEEC
T ss_pred EEEeCCCCcEEcCc---hhhCcCCCCCc
Confidence 57999999999854 45699997654
No 148
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=34.18 E-value=13 Score=41.12 Aligned_cols=41 Identities=22% Similarity=0.665 Sum_probs=29.0
Q ss_pred ceecCCCCCeeeecC-CCCeeecCCCCceeeccccc----------cCCCccchhhhh
Q psy5925 8 ICELCNSEEVIFPWQ-LSSVHRCNQCGACFHTKCHS----------QLPCKRCIRMRI 54 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~-~~~~~~c~~c~~~~h~~c~~----------~~~cp~c~r~~~ 54 (696)
.| +|+.+ ++ ...-.+|..|..=||..|.. .-.||.|.+...
T Consensus 39 yC-~C~~~-----~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 39 YC-VCRQP-----YDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp ET-TTTEE-----CCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred EE-eCCCc-----CCCCCCeEEccCCCCceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 35 67753 22 24568999999999999973 124999987643
No 149
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=32.77 E-value=10 Score=33.24 Aligned_cols=27 Identities=22% Similarity=0.599 Sum_probs=20.2
Q ss_pred ecCCCCceeeccccc-----cCCCccchhhhh
Q psy5925 28 RCNQCGACFHTKCHS-----QLPCKRCIRMRI 54 (696)
Q Consensus 28 ~c~~c~~~~h~~c~~-----~~~cp~c~r~~~ 54 (696)
....|+-+||..|.. ...||.|...-.
T Consensus 93 ~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 124 (133)
T 4ap4_A 93 VSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 124 (133)
T ss_dssp EEETTSBEEEHHHHHHHHHHCSBCTTTCCBCC
T ss_pred EeCCCCChhhHHHHHHHHHcCCCCCCCCCcCC
Confidence 455789999999974 468999965433
No 150
>2gnr_A Conserved hypothetical protein; 13815350, structural genomics, PSI, protein structure initiative; 1.80A {Sulfolobus solfataricus P2} PDB: 3irb_A
Probab=32.36 E-value=16 Score=33.65 Aligned_cols=26 Identities=23% Similarity=0.625 Sum_probs=19.8
Q ss_pred CeeecCCCCceeeccccccCCCccchhhh
Q psy5925 25 SVHRCNQCGACFHTKCHSQLPCKRCIRMR 53 (696)
Q Consensus 25 ~~~~c~~c~~~~h~~c~~~~~cp~c~r~~ 53 (696)
..++|..|++++|-. ...||+|....
T Consensus 46 ~~~rC~~CG~~~fPP---r~~Cp~C~s~~ 71 (145)
T 2gnr_A 46 IGSKCSKCGRIFVPA---RSYCEHCFVKI 71 (145)
T ss_dssp EEEECTTTCCEEESC---CSEETTTTEEC
T ss_pred EEEEECCCCcEEeCC---CCCCCCCCCCc
Confidence 457999999998743 35699997654
No 151
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=31.50 E-value=9.6 Score=33.44 Aligned_cols=50 Identities=18% Similarity=0.375 Sum_probs=32.1
Q ss_pred CCccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----cCCCccchhhhh
Q psy5925 4 ARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----QLPCKRCIRMRI 54 (696)
Q Consensus 4 ~~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~~~cp~c~r~~~ 54 (696)
...+.|.+|.+. ..=|.+......-..||-.||..|+. +..||.|.+.-.
T Consensus 5 ~~~~~C~IC~~~-~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 59 (133)
T 4ap4_A 5 SGTVSCPICMDG-YSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKIN 59 (133)
T ss_dssp CCSCBCTTTCCB-HHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCT
T ss_pred CCCCCCcccChh-hhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCc
Confidence 356789999864 11132222333556799999999984 457999965443
No 152
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=31.37 E-value=23 Score=29.06 Aligned_cols=41 Identities=17% Similarity=0.551 Sum_probs=27.5
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-------cCCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-------QLPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-------~~~cp~c~r~ 52 (696)
..+.|.+|.+. |. +...-..||..|++.|.. ...||-|...
T Consensus 12 ~~~~C~IC~~~-----~~--~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~ 59 (92)
T 3ztg_A 12 DELLCLICKDI-----MT--DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQN 59 (92)
T ss_dssp TTTEETTTTEE-----CS--SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCS
T ss_pred cCCCCCCCChh-----hc--CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCc
Confidence 45789999852 11 122334499999999973 1379999765
No 153
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=31.12 E-value=43 Score=24.82 Aligned_cols=27 Identities=26% Similarity=0.736 Sum_probs=20.2
Q ss_pred CCeeecC-CCCceeeccccc---------cCCCccch
Q psy5925 24 SSVHRCN-QCGACFHTKCHS---------QLPCKRCI 50 (696)
Q Consensus 24 ~~~~~c~-~c~~~~h~~c~~---------~~~cp~c~ 50 (696)
..-.+|. .|..=||..|.. +-.||+|.
T Consensus 16 ~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 16 VDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp CCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred CcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4567999 899999999974 12488773
No 154
>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}
Probab=30.48 E-value=22 Score=27.13 Aligned_cols=10 Identities=40% Similarity=1.248 Sum_probs=5.5
Q ss_pred CccceecCCC
Q psy5925 5 RGFICELCNS 14 (696)
Q Consensus 5 ~g~~ce~c~~ 14 (696)
|.|.|+.|+.
T Consensus 3 Kpy~C~~C~k 12 (60)
T 4gzn_C 3 RPFFCNFCGK 12 (60)
T ss_dssp CCEECTTTCC
T ss_pred CCccCCCCCC
Confidence 5555555553
No 155
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=30.09 E-value=32 Score=29.76 Aligned_cols=43 Identities=19% Similarity=0.346 Sum_probs=28.7
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeecccccc---CCCccchhhhhc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ---LPCKRCIRMRIR 55 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~~---~~cp~c~r~~~r 55 (696)
-+.|.+|.+.- . +...-..||-.|++.|... ..||-|...-..
T Consensus 22 ~~~C~IC~~~~-----~--~pv~~~~CgH~fC~~Ci~~~~~~~CP~Cr~~~~~ 67 (117)
T 1jm7_B 22 LLRCSRCTNIL-----R--EPVCLGGCEHIFCSNCVSDCIGTGCPVCYTPAWI 67 (117)
T ss_dssp TTSCSSSCSCC-----S--SCBCCCSSSCCBCTTTGGGGTTTBCSSSCCBCSC
T ss_pred CCCCCCCChHh-----h--CccEeCCCCCHHHHHHHHHHhcCCCcCCCCcCcc
Confidence 47899997631 1 1122236999999999853 479999766543
No 156
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=29.79 E-value=19 Score=29.94 Aligned_cols=29 Identities=21% Similarity=0.525 Sum_probs=24.9
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceee
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFH 37 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h 37 (696)
.|.-|.+.++||.-- .+++.|..|+++.=
T Consensus 38 kCp~C~~~~~VFShA-~t~V~C~~CgtvL~ 66 (86)
T 3iz6_X 38 KCQGCFNITTVFSHS-QTVVVCPGCQTVLC 66 (86)
T ss_dssp ECTTTCCEEEEETTC-SSCCCCSSSCCCCS
T ss_pred ECCCCCCeeEEEecC-CcEEEccCCCCEee
Confidence 588899999999988 48899999998863
No 157
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=29.69 E-value=24 Score=27.17 Aligned_cols=39 Identities=28% Similarity=0.806 Sum_probs=26.9
Q ss_pred cceecCCCCCeeeecCCCCeeecCC--CC-ceeeccccc-------cCCCccchhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQ--CG-ACFHTKCHS-------QLPCKRCIRM 52 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~--c~-~~~h~~c~~-------~~~cp~c~r~ 52 (696)
-.| +|+..+ + ..-..|.. |. .-||..|.. +-.||.|.+.
T Consensus 11 ~~C-~C~~~~----~--g~mi~CD~cdC~~~wfH~~Cvgl~~~p~g~w~C~~C~~~ 59 (60)
T 2vnf_A 11 TYC-LCHQVS----Y--GEMIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 59 (60)
T ss_dssp EET-TTTEEC----C--SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHC-
T ss_pred CEE-ECCCcC----C--CCEEEeCCCCCCCceEehhcCCCCcCCCCCEECcCccCc
Confidence 346 787753 2 35678999 66 789999984 1249999763
No 158
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=29.63 E-value=23 Score=27.50 Aligned_cols=41 Identities=27% Similarity=0.561 Sum_probs=27.5
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc--------cCCCccchhhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--------QLPCKRCIRMR 53 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~--------~~~cp~c~r~~ 53 (696)
..+.|.+|... |. +.... .|+-.||..|.. ...||-|...-
T Consensus 19 ~~~~C~IC~~~-----~~--~~~~~-~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~ 67 (73)
T 2ysl_A 19 EEVICPICLDI-----LQ--KPVTI-DCGHNFCLKCITQIGETSCGFFKCPLCKTSV 67 (73)
T ss_dssp CCCBCTTTCSB-----CS--SEEEC-TTCCEEEHHHHHHHCSSSCSCCCCSSSCCCC
T ss_pred cCCEeccCCcc-----cC--CeEEc-CCCChhhHHHHHHHHHcCCCCCCCCCCCCcC
Confidence 46789999863 11 11222 799999999974 12699996543
No 159
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=29.35 E-value=39 Score=31.24 Aligned_cols=38 Identities=18% Similarity=0.433 Sum_probs=26.8
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccch
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCI 50 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~ 50 (696)
..|.|.+|... |. +..++ .||-.|.+.|+. ...||-|.
T Consensus 17 ~~~~C~IC~~~-----~~--~pv~~-~CgH~fC~~Ci~~~~~~~~~~CP~Cr 60 (170)
T 3hcs_A 17 SKYECPICLMA-----LR--EAVQT-PCGHRFCKACIIKSIRDAGHKCPVDN 60 (170)
T ss_dssp GGGBCTTTCSB-----CS--SEEEC-TTSCEEEHHHHHHHHHHHCSBCTTTC
T ss_pred CCCCCCCCChh-----hc--CcEEC-CCCCHHHHHHHHHHHHhCCCCCCCCc
Confidence 35789999863 22 22344 699999999984 23799994
No 160
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=29.30 E-value=24 Score=30.82 Aligned_cols=35 Identities=20% Similarity=0.542 Sum_probs=24.1
Q ss_pred ceecCCCCCee--eecCCCCeeecCCCCceeeccccc
Q psy5925 8 ICELCNSEEVI--FPWQLSSVHRCNQCGACFHTKCHS 42 (696)
Q Consensus 8 ~ce~c~~~~~i--~p~~~~~~~~c~~c~~~~h~~c~~ 42 (696)
+|.+|...+.- -.=+.+.-..|..|+..||..|..
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~ 39 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQ 39 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTT
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCC
Confidence 58889775421 011223557999999999999974
No 161
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=29.17 E-value=29 Score=28.79 Aligned_cols=36 Identities=14% Similarity=0.371 Sum_probs=28.6
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS 42 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~ 42 (696)
.-|.|.+|.. +..|.-. ...-.|..|+..|-...|.
T Consensus 26 ~~y~Cp~CG~-~~v~r~a-tGiW~C~~Cg~~~aggay~ 61 (83)
T 1vq8_Z 26 EDHACPNCGE-DRVDRQG-TGIWQCSYCDYKFTGGSYK 61 (83)
T ss_dssp SCEECSSSCC-EEEEEEE-TTEEEETTTCCEEECCSSS
T ss_pred ccCcCCCCCC-cceeccC-CCeEECCCCCCEecCCEec
Confidence 4588999986 5667666 3778999999999888885
No 162
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=29.13 E-value=33 Score=29.82 Aligned_cols=38 Identities=18% Similarity=0.456 Sum_probs=27.6
Q ss_pred cceecCCCCCeeeecCCCCeeecC--CCCceeeccccc-----c--CCCccchhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCN--QCGACFHTKCHS-----Q--LPCKRCIRM 52 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~--~c~~~~h~~c~~-----~--~~cp~c~r~ 52 (696)
-.|..|++. .....|. .|...||..|.. . -.||+|.-.
T Consensus 16 ~~C~~C~~~--------G~ll~CD~~~Cp~~fH~~Cl~L~~~P~g~W~Cp~c~C~ 62 (107)
T 4gne_A 16 DYCFQCGDG--------GELVMCDKKDCPKAYHLLCLNLTQPPYGKWECPWHQCD 62 (107)
T ss_dssp SSCTTTCCC--------SEEEECCSTTCCCEECTGGGTCSSCCSSCCCCGGGBCT
T ss_pred CCCCcCCCC--------CcEeEECCCCCCcccccccCcCCcCCCCCEECCCCCCC
Confidence 468888853 3467899 899999999974 1 249988533
No 163
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=29.13 E-value=18 Score=31.07 Aligned_cols=27 Identities=33% Similarity=0.769 Sum_probs=19.9
Q ss_pred eeecCCCCceeeccccc----------cCCCccchhh
Q psy5925 26 VHRCNQCGACFHTKCHS----------QLPCKRCIRM 52 (696)
Q Consensus 26 ~~~c~~c~~~~h~~c~~----------~~~cp~c~r~ 52 (696)
+.+...|+-+||..|.. ...||-|.+.
T Consensus 55 ~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~ 91 (114)
T 1v87_A 55 VGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTI 91 (114)
T ss_dssp CEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCB
T ss_pred ceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCc
Confidence 34467899999999952 2469999654
No 164
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=28.95 E-value=22 Score=30.66 Aligned_cols=40 Identities=23% Similarity=0.471 Sum_probs=27.1
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccchhhh
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCIRMR 53 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~ 53 (696)
.+.|.+|... |. +-+. ..||..||..|.. ...||-|...-
T Consensus 15 ~~~C~iC~~~-----~~-~p~~--~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~ 60 (115)
T 3l11_A 15 ECQCGICMEI-----LV-EPVT--LPCNHTLCKPCFQSTVEKASLCCPFCRRRV 60 (115)
T ss_dssp HHBCTTTCSB-----CS-SCEE--CTTSCEECHHHHCCCCCTTTSBCTTTCCBC
T ss_pred CCCCccCCcc-----cC-ceeE--cCCCCHHhHHHHHHHHhHCcCCCCCCCccc
Confidence 5789999863 11 1122 2699999999974 23699997653
No 165
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=27.56 E-value=22 Score=23.56 Aligned_cols=27 Identities=19% Similarity=0.607 Sum_probs=16.6
Q ss_pred ceecCCCCCeeeecCCCCeeecCCCCceeecccc
Q psy5925 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH 41 (696)
Q Consensus 8 ~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~ 41 (696)
.|..|+. .+||-+.-. .=+..||+.||
T Consensus 5 ~C~~C~k--~Vy~~Ek~~-----~~g~~~Hk~CF 31 (31)
T 1zfo_A 5 NCARCGK--IVYPTEKVN-----CLDKFWHKACF 31 (31)
T ss_dssp BCSSSCS--BCCGGGCCC-----SSSSCCCGGGC
T ss_pred cCCccCC--EEecceeEE-----ECCeEecccCC
Confidence 4566654 466665321 23688999996
No 166
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=27.31 E-value=27 Score=25.67 Aligned_cols=37 Identities=27% Similarity=0.621 Sum_probs=24.0
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc--------cCCCccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--------QLPCKRC 49 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~--------~~~cp~c 49 (696)
..+.|.+|.+.-. =| .. ..|+-.||+.|.. ...||-|
T Consensus 14 ~~~~C~IC~~~~~-~p------~~-~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK-EP------VI-IECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS-SC------CC-CSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC-cc------Ee-CCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4578999976411 02 11 3699999999963 2458876
No 167
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=26.43 E-value=29 Score=30.50 Aligned_cols=36 Identities=17% Similarity=0.493 Sum_probs=25.5
Q ss_pred CCeeecCCCCceeeccccccC-CCccchhhhhccccccce
Q psy5925 24 SSVHRCNQCGACFHTKCHSQL-PCKRCIRMRIRRDSMKGI 62 (696)
Q Consensus 24 ~~~~~c~~c~~~~h~~c~~~~-~cp~c~r~~~r~~~~~~~ 62 (696)
....+|..|+..|.-.=. .. .||.|...+.+ ++.|.
T Consensus 71 p~~~~C~~CG~~~e~~~~-~~~~CP~Cgs~~~~--i~~G~ 107 (119)
T 2kdx_A 71 KVELECKDCSHVFKPNAL-DYGVCEKCHSKNVI--ITQGN 107 (119)
T ss_dssp CCEEECSSSSCEECSCCS-TTCCCSSSSSCCCE--EEESS
T ss_pred cceEEcCCCCCEEeCCCC-CCCcCccccCCCcE--EecCC
Confidence 467899999999987433 35 79999877544 44444
No 168
>2g6q_A Inhibitor of growth protein 2; protein-peptide complex, gene regulation, apoptosis; HET: M3L; 2.00A {Mus musculus}
Probab=25.56 E-value=31 Score=26.77 Aligned_cols=39 Identities=31% Similarity=0.776 Sum_probs=27.1
Q ss_pred cceecCCCCCeeeecCCCCeeecCC--CC-ceeeccccc-------cCCCccchhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQ--CG-ACFHTKCHS-------QLPCKRCIRM 52 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~--c~-~~~h~~c~~-------~~~cp~c~r~ 52 (696)
-.| +|+..+ +. .-..|.. |. .-||..|.. +-.||.|.+.
T Consensus 12 ~yC-~C~~~~--~g----~MI~CD~c~C~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~ 60 (62)
T 2g6q_A 12 TYC-LCNQVS--YG----EMIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGD 60 (62)
T ss_dssp EET-TTTEEC--CS----EEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHTC
T ss_pred cEE-ECCCCC--CC----CeeeeeCCCCCcccEecccCCcCcCCCCCEECcCcccC
Confidence 356 787753 22 3568999 55 899999984 1259999764
No 169
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=25.48 E-value=26 Score=32.08 Aligned_cols=42 Identities=21% Similarity=0.470 Sum_probs=27.4
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc-----c-CCCccchhhhhc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-----Q-LPCKRCIRMRIR 55 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~-----~-~~cp~c~r~~~r 55 (696)
.+.|.+|... |. +-+ . ..|+-.|++.|.. . ..||-|...-..
T Consensus 78 ~~~C~IC~~~-----~~-~pv-~-~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 78 SFMCVCCQEL-----VY-QPV-T-TECFHNVCKDCLQRSFKAQVFSCPACRHDLGQ 125 (150)
T ss_dssp HTBCTTTSSB-----CS-SEE-E-CTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred CCEeecCChh-----hc-CCE-E-cCCCCchhHHHHHHHHHhCCCcCCCCCccCCC
Confidence 3689999762 11 111 1 4799999999974 1 369999655433
No 170
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=25.17 E-value=45 Score=26.66 Aligned_cols=28 Identities=18% Similarity=0.409 Sum_probs=18.1
Q ss_pred CeeecCCCCceeeccccccCCCccchhh
Q psy5925 25 SVHRCNQCGACFHTKCHSQLPCKRCIRM 52 (696)
Q Consensus 25 ~~~~c~~c~~~~h~~c~~~~~cp~c~r~ 52 (696)
-...|..|+..|-..=-....||.|..+
T Consensus 27 v~Y~C~~CG~~~e~~~~d~irCp~CG~R 54 (70)
T 1twf_L 27 LKYICAECSSKLSLSRTDAVRCKDCGHR 54 (70)
T ss_dssp CCEECSSSCCEECCCTTSTTCCSSSCCC
T ss_pred EEEECCCCCCcceeCCCCCccCCCCCce
Confidence 4468999999953331123569999874
No 171
>3c6w_A P28ING5, inhibitor of growth protein 5; chromatin, PHD, ING, epigenetics, alternative splicing, metal-binding, phosphoprotein, zinc; HET: M3L; 1.75A {Homo sapiens} PDB: 2pnx_A*
Probab=24.82 E-value=32 Score=26.37 Aligned_cols=39 Identities=28% Similarity=0.831 Sum_probs=27.5
Q ss_pred cceecCCCCCeeeecCCCCeeecCC--CC-ceeeccccc-------cCCCccchhh
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQ--CG-ACFHTKCHS-------QLPCKRCIRM 52 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~--c~-~~~h~~c~~-------~~~cp~c~r~ 52 (696)
-.| +|+..+ + ..-..|.. |. .-||..|.. +-.||.|.+.
T Consensus 10 ~yC-~C~~~~----~--g~mi~CD~~~C~~~wfH~~Cvgl~~~p~~~w~Cp~C~~~ 58 (59)
T 3c6w_A 10 TYC-LCHQVS----Y--GEMIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRCVQE 58 (59)
T ss_dssp EET-TTTEEC----C--SEEEECSCTTCSSCEEETGGGTCSSCCSSCCCCHHHHCC
T ss_pred cEE-ECCCCC----C--CCeeEeeCCCCCCCCEecccCCcccCCCCCEECcCccCc
Confidence 456 787754 1 24678999 77 699999984 1249999753
No 172
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=24.39 E-value=29 Score=30.16 Aligned_cols=36 Identities=22% Similarity=0.488 Sum_probs=25.6
Q ss_pred cceecCCCCCee-eecCCCCeeecCCCCceeeccccc
Q psy5925 7 FICELCNSEEVI-FPWQLSSVHRCNQCGACFHTKCHS 42 (696)
Q Consensus 7 ~~ce~c~~~~~i-~p~~~~~~~~c~~c~~~~h~~c~~ 42 (696)
-+|-+|.+.+.- .--+.+.-..|..|+..||..|..
T Consensus 6 ~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~ 42 (112)
T 3v43_A 6 PICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLK 42 (112)
T ss_dssp SSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHT
T ss_pred ccccccCCchhhCcCCCchhceEhhhcCCCCCCchhc
Confidence 478889775311 112335678999999999999973
No 173
>3cym_A Uncharacterized protein BAD_0989; structural genomics, unknown function; 2.10A {Bifidobacterium adolescentis atcc 1570ORGANISM_TAXID}
Probab=23.85 E-value=1.3e+02 Score=32.57 Aligned_cols=99 Identities=14% Similarity=0.141 Sum_probs=61.1
Q ss_pred HHHHHHHHHhCCCEEEecccccccHHHHHHHHHHcCCCCcccccccccccccccCCCccccceeeecccEEEehHHHHhh
Q psy5925 360 SIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRH 439 (696)
Q Consensus 360 ~~f~~~I~~~DPDIIvGyNi~~fDl~YL~~Ra~~lgi~~~~~lgR~~~~~~~~~~~~~~~~~~~~i~GRl~lDl~~~~r~ 439 (696)
..|..++. || ..+||+. .+|+..|. .+|+.. ..++|+ ..+..
T Consensus 85 ~~L~~lL~--d~-~KV~h~~-k~Dl~~L~----~~gi~~-----------------------------~~~fDt-~lAa~ 126 (440)
T 3cym_A 85 NDFNRAVG--DA-VWILHDS-LQDLPGFD----ELGMEP-----------------------------QRLFDT-EIAAR 126 (440)
T ss_dssp HHHHHHHT--TC-EEEESSH-HHHHHHHH----HHTCCC-----------------------------CEEEEH-HHHHH
T ss_pred HHHHHHHC--CC-CEEEEcC-HHHHHHHH----HcCCcC-----------------------------CceehH-HHHHH
Confidence 44555554 45 6889987 56777552 344421 146788 34444
Q ss_pred hcCCCCCCHHHHHHHHcCCCcCCCChhhHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHh
Q psy5925 440 EVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQL 501 (696)
Q Consensus 440 ~~kl~sysL~~Va~~~L~~~k~~~~~~~l~~~~~~~~~~~~~~~i~Y~l~D~~l~~~L~~kl 501 (696)
.+...+|+|+.++..+||...... ...+.| ...+ .-...+.|+..|+..+++|..++
T Consensus 127 lL~~~~~gL~~L~~~~lg~~~~K~--~~~sdw-~~rp--Ls~~q~~YAa~Da~~Ll~L~~~L 183 (440)
T 3cym_A 127 LLGLKRFGLAAVTEHFLGLTLAKE--HSAADW-SYRP--LPRDWRNYAALDVELLIELETKM 183 (440)
T ss_dssp HTTCSSCSHHHHHHHHHCEECCCC--CTTCCT-TCSS--CCHHHHHHHHHHHHTHHHHHHHH
T ss_pred HhCCCCCCHHHHHHHHhCCCcccc--cccCCC-cCCC--CCHHHHHHHHHHHHHHHHHHHHH
Confidence 444459999999999998543321 122233 2222 11367899999999999888876
No 174
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=23.84 E-value=34 Score=37.34 Aligned_cols=35 Identities=29% Similarity=0.823 Sum_probs=26.3
Q ss_pred CccceecCCCCCeeeecCC-CCeeecCCCCceeecccccc
Q psy5925 5 RGFICELCNSEEVIFPWQL-SSVHRCNQCGACFHTKCHSQ 43 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~-~~~~~c~~c~~~~h~~c~~~ 43 (696)
++-.|+.|++ .| |.. ....+|..|+...|+.|...
T Consensus 219 ~pt~C~~C~~--~l--~g~~~qg~~C~~C~~~~Hk~C~~~ 254 (463)
T 3cxl_A 219 GPHWCEYCAN--FM--WGLIAQGVKCADCGLNVHKQCSKM 254 (463)
T ss_dssp SCCBCTTTCC--BC--CSSSCCEEEETTTCCEECHHHHTT
T ss_pred CCCcchhhhh--hh--hhHHhcCeeccccCcccccccccc
Confidence 4567999975 34 432 35689999999999999853
No 175
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=23.81 E-value=29 Score=29.03 Aligned_cols=35 Identities=23% Similarity=0.568 Sum_probs=26.3
Q ss_pred CCCCccceecCCCCCeeeecCCCCeeecCCCCceeeccccc
Q psy5925 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS 42 (696)
Q Consensus 2 c~~~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~ 42 (696)
+....|.|..|.... . .-..+|..|+--.|-.|..
T Consensus 43 ~~~~~~~C~~C~~~~--~----~~~Y~C~~C~f~lH~~Ca~ 77 (89)
T 1v5n_A 43 TRVQVYTCDKCEEEG--T----IWSYHCDECDFDLHAKCAL 77 (89)
T ss_dssp ECCSSCCCTTTSCCC--C----SCEEECTTTCCCCCHHHHH
T ss_pred eeCCCeEeCCCCCcC--C----CcEEEcCCCCCeEcHHhcC
Confidence 444578999999862 1 3457899999889999974
No 176
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.76 E-value=52 Score=26.73 Aligned_cols=43 Identities=23% Similarity=0.443 Sum_probs=26.6
Q ss_pred CccceecCCCCCeeeecCCCCe----eecCCCCceeeccccc-----c--CCCccchhh
Q psy5925 5 RGFICELCNSEEVIFPWQLSSV----HRCNQCGACFHTKCHS-----Q--LPCKRCIRM 52 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~----~~c~~c~~~~h~~c~~-----~--~~cp~c~r~ 52 (696)
.+-.|-+|.... +.+.. =.|.+....||..|.. + ..||-|...
T Consensus 14 ~~~~C~IC~~~~-----~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~ 67 (80)
T 2d8s_A 14 SQDICRICHCEG-----DDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67 (80)
T ss_dssp TSCCCSSSCCCC-----CSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCB
T ss_pred CCCCCeEcCccc-----cCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCe
Confidence 356799998631 11111 1345556999999963 2 379999643
No 177
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=23.27 E-value=57 Score=33.97 Aligned_cols=40 Identities=8% Similarity=0.120 Sum_probs=30.1
Q ss_pred cCCC-CCeeeecCCCCeeecCCCCceeeccccccCCCccchhhh
Q psy5925 11 LCNS-EEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMR 53 (696)
Q Consensus 11 ~c~~-~~~i~p~~~~~~~~c~~c~~~~h~~c~~~~~cp~c~r~~ 53 (696)
+|-. -..||+ . ....+|+=|||.||.+.- ..-|+=|.=-+
T Consensus 273 iCa~s~tPIY~-g-~~~v~Cp~cgA~y~~~~k-G~lC~vC~l~~ 313 (325)
T 3mv2_A 273 ICAATYKPIYE-D-TPSVSDPLTGSKYVITEK-DKIDRIAMISK 313 (325)
T ss_dssp ECTTTCCEEES-S-SCEEECTTTCCEEEGGGT-TSBCSSSSCBB
T ss_pred eecCCcccccC-C-CCCccCCCCCCeechhhC-CCCCCCCcCcc
Confidence 4555 588999 3 578899999999998765 45688886443
No 178
>2lq6_A Bromodomain-containing protein 1; PHD finger, metal binding protein; NMR {Homo sapiens}
Probab=22.93 E-value=35 Score=28.38 Aligned_cols=32 Identities=25% Similarity=0.790 Sum_probs=23.9
Q ss_pred ccceecCCCCCeeeecCCCCeeecCC--CCceeecccccc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQ--CGACFHTKCHSQ 43 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~--c~~~~h~~c~~~ 43 (696)
.-.|.+|+... ...+.+|.. |...||-.|...
T Consensus 17 ~l~C~iC~~~~------~GAciqC~~~~C~~~fHv~CA~~ 50 (87)
T 2lq6_A 17 KLTCYLCKQKG------VGASIQCHKANCYTAFHVTCAQK 50 (87)
T ss_dssp CCCBTTTTBCC------SSCEEECSCTTTCCEEEHHHHHH
T ss_pred cCCCcCCCCCC------CcEeEecCCCCCCCcCcHHHHHH
Confidence 34688997542 257889976 999999999753
No 179
>3pur_A Lysine-specific demethylase 7 homolog; oxidoreductase-oxidoreductase inhibitor complex; HET: 2HG; 2.10A {Caenorhabditis elegans} PDB: 3n9l_A 3n9m_A* 3n9o_A* 3n9p_A* 3n9q_A* 3n9n_A* 3puq_A*
Probab=22.26 E-value=44 Score=37.10 Aligned_cols=39 Identities=15% Similarity=0.347 Sum_probs=29.2
Q ss_pred CeeeecCCCCeeecCCCCceeeccccc------c----CCCccchhhhh
Q psy5925 16 EVIFPWQLSSVHRCNQCGACFHTKCHS------Q----LPCKRCIRMRI 54 (696)
Q Consensus 16 ~~i~p~~~~~~~~c~~c~~~~h~~c~~------~----~~cp~c~r~~~ 54 (696)
.-++|=.-..-.+|..|..=||..|.. . -.||+|.....
T Consensus 48 ~~~~~n~~~~mI~CD~C~~WfH~~CVgi~~~~a~~~~~y~Cp~C~~~~g 96 (528)
T 3pur_A 48 SHHHKKNDFQWIGCDSCQTWYHFLCSGLEQFEYYLYEKFFCPKCVPHTG 96 (528)
T ss_dssp TTTTTTSTTSEEECTTTCCEEEGGGTTCCGGGTTTEEECCCTTTHHHHC
T ss_pred cccCCCcCCCEEECCCCCcCCCCcCCCCChhHhcCCCeEECcCCcCCCC
Confidence 345566556677999999999999973 1 15999998543
No 180
>3a1b_A DNA (cytosine-5)-methyltransferase 3A, histone H3; zinc-finger, histone binding, chromosomal protein, DNA damag repair, DNA-binding, methylation; HET: DNA; 2.29A {Homo sapiens} PDB: 3a1a_A*
Probab=21.99 E-value=16 Score=34.05 Aligned_cols=38 Identities=26% Similarity=0.418 Sum_probs=31.1
Q ss_pred CccceecCCCCCeeeecCCCCeeecCCCCceeeccccc
Q psy5925 5 RGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS 42 (696)
Q Consensus 5 ~g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~ 42 (696)
--++|--|++..+++.-..-.+..|..|...|+..-|.
T Consensus 35 ~e~~Ct~CG~~~~~~~HPlf~v~lC~~Ck~~y~e~~f~ 72 (159)
T 3a1b_A 35 IEDICISCGSLNVTLEHPLFVGGMCQNCKNCFLECAYQ 72 (159)
T ss_dssp GGGSBTTTCCSCCCEECSSBSSEECHHHHHHHHHHTTC
T ss_pred ccCcccCCCCcCccccCCCccchhhHHHHHHHhhcccc
Confidence 35789999998877777777899999999888876664
No 181
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=21.79 E-value=21 Score=27.24 Aligned_cols=47 Identities=19% Similarity=0.321 Sum_probs=27.8
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccchhhhhc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCIRMRIR 55 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~~r 55 (696)
.+.|.+|......=|- ....=..||..||+.|.. ...||-|.+.-.+
T Consensus 3 ~~~C~IC~~~~~~~~~---~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPS---LKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55 (65)
T ss_dssp TTCCSTTTTHHHHCSS---CCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred CCcCCcCCCCccCCCc---cCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCcccc
Confidence 3678888762111111 101114799999999973 2469999765443
No 182
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=21.61 E-value=31 Score=36.87 Aligned_cols=42 Identities=19% Similarity=0.443 Sum_probs=29.0
Q ss_pred ccceecCCCCCeeeecCCCCeeecCCCCceeeccccc------cCCCccchhhhhc
Q psy5925 6 GFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS------QLPCKRCIRMRIR 55 (696)
Q Consensus 6 g~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~c~~------~~~cp~c~r~~~r 55 (696)
...|.+|.+.. .......||..||..|.. ...||-|...-..
T Consensus 332 ~~~C~ICle~~--------~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAEND--------KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSB--------CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCC--------CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 36899997642 112446799999999963 3679999654433
No 183
>1x4i_A Inhibitor of growth protein 3; structural genomics, PHD domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=21.50 E-value=26 Score=27.93 Aligned_cols=43 Identities=26% Similarity=0.624 Sum_probs=29.2
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCC---ceeeccccc-------cCCCccchhhhhcc
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCG---ACFHTKCHS-------QLPCKRCIRMRIRR 56 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~---~~~h~~c~~-------~~~cp~c~r~~~r~ 56 (696)
-.| +|+..+ +. .-..|..|. .-||..|.. .-.||.|.+...++
T Consensus 7 ~yC-~C~~~~----~g--~MI~CD~cdC~~~WfH~~Cvgl~~~p~~~w~Cp~C~~~~~k~ 59 (70)
T 1x4i_A 7 GYC-ICNQVS----YG--EMVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQCTAAMKRR 59 (70)
T ss_dssp CCS-TTSCCC----CS--SEECCSCTTCSCCCEEHHHHTCSSCCSSCCCCHHHHHHHHHH
T ss_pred eEE-EcCCCC----CC--CEeEeCCCCCCccCCcccccccCcCCCCCEECCCCCcccccc
Confidence 345 577653 22 456899974 679999984 12499998776554
No 184
>1lpv_A Doublesex protein; transcription, drosophila melanogaster, DNA binding, gene regulation,; NMR {Synthetic} SCOP: g.62.1.1
Probab=21.49 E-value=23 Score=26.73 Aligned_cols=43 Identities=19% Similarity=0.374 Sum_probs=29.6
Q ss_pred cceecCCCCCeeeecCCCCeeecCCCCceeecc-c-cccCCCccchhhhhccccccce
Q psy5925 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTK-C-HSQLPCKRCIRMRIRRDSMKGI 62 (696)
Q Consensus 7 ~~ce~c~~~~~i~p~~~~~~~~c~~c~~~~h~~-c-~~~~~cp~c~r~~~r~~~~~~~ 62 (696)
..|..|.+..++-|.- =|+. | |..=.|.+|.-+..|+.+|..|
T Consensus 8 p~CaRCrNHG~~~~lK-------------GHKr~C~~r~C~C~kC~li~eRqrvmaaQ 52 (52)
T 1lpv_A 8 PNCARCRNHGLKITLK-------------GHKRYCKFRYCTCEKCRLTADRQRVMALQ 52 (52)
T ss_dssp SSCHHHHTTTCCCTTT-------------TCGGGCTTTTCCSHHHHHHHHHHCCSCCC
T ss_pred CCCcccccCCCccccC-------------CccCccCCCCCcCCCCcCcHHHhHHhccC
Confidence 4566666666654433 1544 5 4566899999999999988765
No 185
>3a43_A HYPD, hydrogenase nickel incorporation protein HYPA; [NIFE] hydrogenase maturation, zinc-finger, nickel binding, metal-binding; HET: FME; 2.30A {Pyrococcus kodakaraensis} PDB: 3a44_A*
Probab=20.46 E-value=47 Score=30.13 Aligned_cols=37 Identities=24% Similarity=0.524 Sum_probs=24.8
Q ss_pred CCeeecCCCCceeeccc-----------cc---------cCCCccchhhhhccccccce
Q psy5925 24 SSVHRCNQCGACFHTKC-----------HS---------QLPCKRCIRMRIRRDSMKGI 62 (696)
Q Consensus 24 ~~~~~c~~c~~~~h~~c-----------~~---------~~~cp~c~r~~~r~~~~~~~ 62 (696)
....+|..||..|--.= .. ...||+|.-.+.. +..|+
T Consensus 68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~h~~p~~~~~~~~CP~Cgs~~~~--i~~G~ 124 (139)
T 3a43_A 68 EAVFKCRNCNYEWKLKEVKDKFDERIKEDIHFIPEVVHAFLACPKCGSHDFE--VVKGR 124 (139)
T ss_dssp CCEEEETTTCCEEEGGGCTTCCSCCCGGGCCCCGGGCGGGCSCSSSSCCCEE--EEESS
T ss_pred CCcEECCCCCCEEecccccccccccccccccccccccccCCcCccccCCccE--EecCC
Confidence 35789999999987544 20 3569999876543 34444
Done!