Your job contains 1 sequence.
>psy5925
LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRDSMK
GIVDVKCFEESSLERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRDRLYTDPIIVLDF
QSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDSIHEAEITHPD
CSKSSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHV
ENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPE
VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFS
IFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKN
TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYK
WMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRL
NNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTC
LGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEI
LDTRLMVKQSMKEYKFSESLRNLTMLNSMLLIPYRL
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy5925
(696 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
MGI|MGI:1337131 - symbol:Rev3l "REV3-like, catalytic subu... 987 1.4e-117 2
UNIPROTKB|F1NQT0 - symbol:REV3L "DNA polymerase" species:... 974 5.5e-116 2
UNIPROTKB|F1LMP6 - symbol:Rev3l "DNA polymerase" species:... 975 9.1e-116 2
UNIPROTKB|F1M8G6 - symbol:Rev3l "DNA polymerase" species:... 975 9.2e-116 2
ZFIN|ZDB-GENE-050302-55 - symbol:rev3l "REV3-like, cataly... 962 1.8e-112 2
UNIPROTKB|F1P7E8 - symbol:REV3L "DNA polymerase" species:... 985 8.0e-99 3
UNIPROTKB|F1P7D5 - symbol:REV3L "DNA polymerase" species:... 985 9.1e-99 3
UNIPROTKB|E1BPY8 - symbol:REV3L "DNA polymerase" species:... 978 8.1e-98 2
UNIPROTKB|O60673 - symbol:REV3L "DNA polymerase zeta cata... 985 1.7e-97 1
FB|FBgn0002891 - symbol:mus205 "mutagen-sensitive 205" sp... 937 6.1e-96 3
UNIPROTKB|I3L6U8 - symbol:LOC100737059 "DNA polymerase" s... 906 2.3e-93 2
ASPGD|ASPL0000070569 - symbol:uvsI species:162425 "Emeric... 692 6.1e-84 3
UNIPROTKB|G4NL37 - symbol:MGG_02986 "DNA polymerase" spec... 705 1.3e-83 2
SGD|S000006088 - symbol:REV3 "Catalytic subunit of DNA po... 627 7.4e-75 2
DICTYBASE|DDB_G0271608 - symbol:rev3 "DNA polymerase zeta... 628 1.2e-71 2
POMBASE|SPAC688.10 - symbol:rev3 "DNA polymerase zeta cat... 621 5.6e-71 2
UNIPROTKB|Q8X1U8 - symbol:UPR1 "DNA polymerase" species:5... 673 1.1e-64 1
UNIPROTKB|A8IZI8 - symbol:POLZ1 "DNA polymerase" species:... 634 4.8e-62 1
UNIPROTKB|Q75F27 - symbol:AGOS_AAL099C "DNA polymerase" s... 643 9.5e-62 1
WB|WBGene00021344 - symbol:Y37B11A.2 species:6239 "Caenor... 539 6.8e-51 1
UNIPROTKB|Q9BKQ3 - symbol:Y37B11A.2 "DNA polymerase" spec... 539 6.8e-51 1
UNIPROTKB|I3LER4 - symbol:I3LER4 "Uncharacterized protein... 463 9.8e-44 1
UNIPROTKB|Q233J3 - symbol:TTHERM_00391570 "DNA polymerase... 438 9.0e-42 2
GENEDB_PFALCIPARUM|PF10_0362 - symbol:PF10_0362 "DNA poly... 266 9.7e-27 4
UNIPROTKB|Q8IJ38 - symbol:PF10_0362 "DNA polymerase" spec... 266 9.7e-27 4
UNIPROTKB|E2R5W5 - symbol:POLD1 "DNA polymerase" species:... 271 4.8e-26 3
UNIPROTKB|J9NS34 - symbol:POLD1 "DNA polymerase" species:... 271 5.3e-26 3
ZFIN|ZDB-GENE-060429-1 - symbol:pold1 "polymerase (DNA di... 297 1.5e-25 3
UNIPROTKB|F1RH32 - symbol:POLD1 "DNA polymerase" species:... 267 2.7e-25 3
UNIPROTKB|P28340 - symbol:POLD1 "DNA polymerase delta cat... 263 1.2e-24 3
UNIPROTKB|P28339 - symbol:POLD1 "DNA polymerase delta cat... 261 2.0e-24 3
UNIPROTKB|Q22HL1 - symbol:TTHERM_00636920 "DNA polymerase... 287 2.9e-24 2
UNIPROTKB|Q8X0N7 - symbol:B10H4.020 "DNA polymerase" spec... 263 2.0e-23 2
WB|WBGene00008645 - symbol:F10C2.4 species:6239 "Caenorha... 271 4.4e-23 2
UNIPROTKB|P90829 - symbol:F10C2.4 "DNA polymerase delta c... 271 4.4e-23 2
UNIPROTKB|E1BNZ6 - symbol:E1BNZ6 "DNA polymerase" species... 255 7.6e-23 3
UNIPROTKB|Q9LRE6 - symbol:POLD1 "DNA polymerase delta cat... 262 1.1e-22 2
GENEDB_PFALCIPARUM|PF10_0165 - symbol:PF10_0165 "DNA poly... 279 1.8e-22 2
UNIPROTKB|Q7KQL4 - symbol:PF10_0165 "DNA polymerase" spec... 279 1.8e-22 2
DICTYBASE|DDB_G0285381 - symbol:polD1 "DNA polymerase del... 253 5.4e-22 3
FB|FBgn0263600 - symbol:DNApol-delta "DNA-polymerase-delt... 302 5.5e-22 2
UNIPROTKB|Q7RSZ8 - symbol:PY00203 "DNA polymerase" specie... 278 1.2e-21 2
RGD|621839 - symbol:Pold1 "polymerase (DNA directed), del... 263 6.3e-21 2
UNIPROTKB|O54747 - symbol:Pold1 "DNA polymerase delta cat... 263 6.3e-21 2
MGI|MGI:97741 - symbol:Pold1 "polymerase (DNA directed), ... 261 8.3e-21 2
SGD|S000002260 - symbol:POL3 "Catalytic subunit of DNA po... 250 1.9e-20 2
POMBASE|SPBC336.04 - symbol:cdc6 "DNA polymerase delta ca... 240 2.3e-19 2
ASPGD|ASPL0000065466 - symbol:AN7325 species:162425 "Emer... 244 3.1e-19 2
UNIPROTKB|Q5AWK5 - symbol:AN7325.2 "DNA polymerase" speci... 244 3.1e-19 2
UNIPROTKB|Q755K6 - symbol:AGOS_AFL189W "DNA polymerase" s... 225 2.0e-18 3
UNIPROTKB|A8HPJ0 - symbol:POLD1 "DNA polymerase" species:... 221 8.9e-17 2
UNIPROTKB|Q8TSB3 - symbol:MA_0885 "DNA polymerase" specie... 203 5.7e-14 2
UNIPROTKB|I3L6B3 - symbol:I3L6B3 "Uncharacterized protein... 168 1.6e-11 1
FB|FBgn0034694 - symbol:CG6613 species:7227 "Drosophila m... 170 4.7e-09 1
UNIPROTKB|Q23AJ0 - symbol:TTHERM_00424700 "DNA polymerase... 120 6.4e-09 3
UNIPROTKB|Q6ZWE6 - symbol:PLEKHM3 "Pleckstrin homology do... 168 8.4e-09 1
MGI|MGI:2443627 - symbol:Plekhm3 "pleckstrin homology dom... 168 8.4e-09 1
MGI|MGI:2685590 - symbol:5031414D18Rik "RIKEN cDNA 503141... 167 8.5e-09 1
ZFIN|ZDB-GENE-030131-2752 - symbol:plekhm1 "pleckstrin ho... 169 1.0e-08 1
UNIPROTKB|E2QUW8 - symbol:PLEKHM3 "Uncharacterized protei... 167 1.1e-08 1
UNIPROTKB|F1NS82 - symbol:F1NS82 "Uncharacterized protein... 168 1.1e-08 1
UNIPROTKB|E1BSU7 - symbol:PLEKHM3 "Uncharacterized protei... 166 1.4e-08 1
RGD|1307151 - symbol:Plekhm3 "pleckstrin homology domain ... 165 1.8e-08 1
MGI|MGI:1915160 - symbol:1700021K19Rik "RIKEN cDNA 170002... 165 2.4e-08 1
UNIPROTKB|Q92622 - symbol:KIAA0226 "Run domain Beclin-1 i... 165 2.5e-08 1
ZFIN|ZDB-GENE-070912-382 - symbol:si:dkey-159b16.1 "si:dk... 163 2.6e-08 1
UNIPROTKB|Q9DE46 - symbol:pola1 "DNA polymerase alpha cat... 111 3.2e-08 3
RGD|1305422 - symbol:RGD1305422 "similar to mKIAA0226 pro... 163 4.0e-08 1
UNIPROTKB|K7EQ68 - symbol:PLEKHM1 "Pleckstrin homology do... 136 4.2e-08 1
UNIPROTKB|E5GAJ0 - symbol:KIAA0226 "Uncharacterized prote... 162 5.2e-08 1
MGI|MGI:99660 - symbol:Pola1 "polymerase (DNA directed), ... 99 7.3e-08 3
UNIPROTKB|E1BK05 - symbol:KIAA0226 "Uncharacterized prote... 160 8.6e-08 1
RGD|621816 - symbol:Pola1 "polymerase (DNA directed), alp... 102 9.0e-08 4
UNIPROTKB|O89042 - symbol:Pola1 "DNA polymerase alpha cat... 102 9.0e-08 4
ZFIN|ZDB-GENE-030114-9 - symbol:pola1 "polymerase (DNA di... 99 1.5e-07 3
UNIPROTKB|F6Y1C9 - symbol:POLA1 "DNA polymerase" species:... 102 1.8e-07 3
UNIPROTKB|P09884 - symbol:POLA1 "DNA polymerase alpha cat... 99 1.8e-07 3
UNIPROTKB|A6NMQ1 - symbol:POLA1 "DNA polymerase" species:... 99 1.9e-07 3
POMBASE|SPAC3H5.06c - symbol:pol1 "DNA polymerase alpha c... 111 5.7e-07 3
UNIPROTKB|E2QVU2 - symbol:POLA1 "Uncharacterized protein"... 95 7.6e-07 3
FB|FBgn0046296 - symbol:CG11534 species:7227 "Drosophila ... 146 1.1e-06 1
UNIPROTKB|Q59J89 - symbol:Q59J89 "DNA polymerase" species... 99 2.2e-06 3
UNIPROTKB|F1NR19 - symbol:POLA1 "DNA polymerase" species:... 99 2.3e-06 3
MGI|MGI:1346331 - symbol:Def8 "differentially expressed i... 142 2.5e-06 1
RGD|1309008 - symbol:Def8 "differentially expressed in FD... 142 2.5e-06 1
UNIPROTKB|Q7RBM5 - symbol:PY06115 "DNA polymerase" specie... 148 3.1e-06 2
UNIPROTKB|P95979 - symbol:dpo3 "DNA polymerase 3" species... 144 3.3e-06 1
CGD|CAL0002431 - symbol:POL1 species:5476 "Candida albica... 106 5.1e-06 2
DICTYBASE|DDB_G0293570 - symbol:DDB_G0293570 "RUN domain-... 145 5.3e-06 1
UNIPROTKB|Q59J90 - symbol:Q59J90 "DNA polymerase" species... 100 6.1e-06 2
UNIPROTKB|F1P7G0 - symbol:DEF8 "Uncharacterized protein" ... 138 6.8e-06 1
UNIPROTKB|G3X7G7 - symbol:Bt.24525 "Uncharacterized prote... 142 8.4e-06 1
UNIPROTKB|F1MUK5 - symbol:DEF8 "Differentially-expressed ... 137 8.6e-06 1
UNIPROTKB|A5PJM7 - symbol:DEF8 "Differentially expressed ... 137 8.6e-06 1
UNIPROTKB|F1S6M6 - symbol:DEF8 "Uncharacterized protein" ... 137 8.7e-06 1
UNIPROTKB|F1RRQ5 - symbol:PLEKHM1 "Uncharacterized protei... 140 1.4e-05 1
UNIPROTKB|H3BUG7 - symbol:DEF8 "Differentially-expressed ... 134 1.7e-05 1
UNIPROTKB|E1BJF4 - symbol:POLA1 "DNA polymerase" species:... 102 2.1e-05 3
RGD|1308010 - symbol:Plekhm1 "pleckstrin homology domain ... 138 2.3e-05 1
MGI|MGI:2443207 - symbol:Plekhm1 "pleckstrin homology dom... 138 2.3e-05 1
WARNING: Descriptions of 22 database sequences were not reported due to the
limiting value of parameter V = 100.
>MGI|MGI:1337131 [details] [associations]
symbol:Rev3l "REV3-like, catalytic subunit of DNA polymerase
zeta RAD54 like (S. cerevisiae)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0016035 "zeta DNA polymerase
complex" evidence=ISO;IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051536
"iron-sulfur cluster binding" evidence=IEA] [GO:0051539 "4 iron, 4
sulfur cluster binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AF083464 MGI:MGI:1337131
GO:GO:0005634 GO:GO:0005694 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
HOGENOM:HOG000112263 HOVERGEN:HBG000426 KO:K02350 OMA:DGTADEN
ChiTaRS:REV3L GO:GO:0016035 EMBL:AB031049 EMBL:AC118733
EMBL:AC119943 EMBL:D78644 IPI:IPI00378205 PIR:T17202
RefSeq:NP_035394.2 UniGene:Mm.439723 PDB:4FJO PDBsum:4FJO
ProteinModelPortal:Q61493 SMR:Q61493 STRING:Q61493
PhosphoSite:Q61493 PaxDb:Q61493 PRIDE:Q61493
Ensembl:ENSMUST00000019986 Ensembl:ENSMUST00000164763 GeneID:19714
KEGG:mmu:19714 UCSC:uc007ewc.1 GeneTree:ENSGT00550000074640
InParanoid:Q61493 NextBio:297104 Bgee:Q61493 Genevestigator:Q61493
GermOnline:ENSMUSG00000019841 Uniprot:Q61493
Length = 3122
Score = 987 (352.5 bits), Expect = 1.4e-117, Sum P(2) = 1.4e-117
Identities = 186/351 (52%), Positives = 269/351 (76%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
LE + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2366 LEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2425
Query: 407 E--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 460
+ +E R ++ RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2426 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2485
Query: 461 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 520
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2486 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2545
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580
VL+RGSQ+RVES+MLR+++ N++ V+PSI+QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2546 VLTRGSQYRVESMMLRIAKPMNYIPVTPSIQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2605
Query: 581 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSG 640
DFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++ ++T+SP+G
Sbjct: 2606 DFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRHDVTVSPNG 2665
Query: 641 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
VAFV S+R G+LP+ML+EIL TRLMVKQSMK YK +L MLN+ L
Sbjct: 2666 VAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYKQDRALSR--MLNARQL 2714
Score = 224 (83.9 bits), Expect = 1.4e-117, Sum P(2) = 1.4e-117
Identities = 52/164 (31%), Positives = 97/164 (59%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2249 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2305
Query: 262 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELP--EVRTK-PI-------- 306
PDP +D + A+FY + + P E+ G+I+I ++ + ++R++ P+
Sbjct: 2306 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRSQTPLLIRSGITG 2365
Query: 307 -QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R
Sbjct: 2366 LEVTYAADEKALFQEITNIIKRYDPDILLGYEIQMHSWGYLLQR 2409
Score = 199 (75.1 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 53/134 (39%), Positives = 72/134 (53%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC + R PP D
Sbjct: 2598 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRV----PP--DL 2651
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLETP-KRRIC-----DSYAIDAMTPDTT 223
+++ I H + + F P + K + + LE K R+ SY D
Sbjct: 2652 LYQ--IRHDVTVSPNGVAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKSYKQDRALSRML 2709
Query: 224 GDYQMGLDNLNEVT 237
Q+GL + VT
Sbjct: 2710 NARQLGLKLIANVT 2723
Score = 39 (18.8 bits), Expect = 4.9e-98, Sum P(2) = 4.9e-98
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 281 PEEDRKVGIILIGQESELPEVRTK---PIQMNFVSNEKELFSTFIENVRQWDP 330
PE+ R++G L+ E+ LP + + + K FS +N R P
Sbjct: 1913 PEKPREIGGRLLMVETRLPNDLIEFEGDFSLEGLRLWKTAFSAMTQNPRPGSP 1965
Score = 39 (18.8 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
++ +LSR+N ++ +P ++Q
Sbjct: 3098 VLFKLSRVNRELSKAPYLRQ 3117
Score = 37 (18.1 bits), Expect = 7.9e-98, Sum P(2) = 7.9e-98
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 355 EKELFSIFIENVRQWDPDI 373
EKE + + ++WD DI
Sbjct: 459 EKEEMELSVVMSQRWDSDI 477
>UNIPROTKB|F1NQT0 [details] [associations]
symbol:REV3L "DNA polymerase" species:9031 "Gallus gallus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 OMA:DGTADEN
GeneTree:ENSGT00550000074640 EMBL:AADN02002055 EMBL:AADN02002056
IPI:IPI00582758 Ensembl:ENSGALT00000024245 Uniprot:F1NQT0
Length = 3100
Score = 974 (347.9 bits), Expect = 5.5e-116, Sum P(2) = 5.5e-116
Identities = 177/343 (51%), Positives = 265/343 (77%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
LE + ++E+ LF + V+++DPDIL+GYE++ SWGYLL+R L ++L Q +SR+
Sbjct: 2344 LEVSYATDERTLFQEVVNIVKRYDPDILLGYEVQMHSWGYLLQRAAALNVDLCQMISRVP 2403
Query: 407 EVEKRN---SSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 460
+ K N + DE + +++ + GRI++N+WR++R+EVNL +YTFEN+ +HVLH+R
Sbjct: 2404 DDNKENRFAAELDEYGSDTMSEINIVGRIILNIWRMMRNEVNLMNYTFENVGFHVLHQRF 2463
Query: 461 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 520
PL ++++L+ W++++ +Y+W V+HY+ RV G ++L+++LD I RTSEMARLFGIQF
Sbjct: 2464 PLFTFRVLSDWFDNKADVYRWKMVDHYVSRVHGNLQLLQKLDLIDRTSEMARLFGIQFLH 2523
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580
VL+RGSQ+RVES+MLR+++ N++ V+PSI+QRA M+AP+ +PLI+EPESR Y++ ++VL
Sbjct: 2524 VLTRGSQYRVESMMLRVAKPMNYIPVTPSIQQRAQMKAPQCVPLIMEPESRFYSNAVLVL 2583
Query: 581 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSG 640
DFQSLYPS++IAYNYCFSTCLG VE+LG D+F FGC L V L +++ ++T+SPSG
Sbjct: 2584 DFQSLYPSIVIAYNYCFSTCLGPVENLGKYDAFKFGCTSLRVPPDLLYQIRHDITVSPSG 2643
Query: 641 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
VAFV S+R G+LP+ML+EIL TR+MVKQSMK YK +++ +
Sbjct: 2644 VAFVKPSVRKGVLPRMLEEILKTRIMVKQSMKAYKHDKAITRM 2686
Score = 222 (83.2 bits), Expect = 5.5e-116, Sum P(2) = 5.5e-116
Identities = 54/164 (32%), Positives = 94/164 (57%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
L PKR ++ I+ + + T +++ + NL E S E +LT++++E+HA +R L+
Sbjct: 2227 LGAPKR---ETSQIEGPSLNNTYGFKVSVQNLQEAKSLHEVQHLTLISMELHARTRRDLE 2283
Query: 262 PDPAYDEVKAIFYYLY--TCPPEEDRK--VGIILI---------GQESELPEVRTKPI-- 306
PDP +D + A+FY + T P D+K G I+I G + P + I
Sbjct: 2284 PDPEFDPICALFYCVSSDTALPNTDKKEITGAIVIDSDRTLSSQGSRDQAPLLTRSGITG 2343
Query: 307 -QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++++ ++E+ LF + V+++DPDIL+GYE++ SWGYLL+R
Sbjct: 2344 LEVSYATDERTLFQEVVNIVKRYDPDILLGYEVQMHSWGYLLQR 2387
Score = 201 (75.8 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 49/113 (43%), Positives = 67/113 (59%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D+F FGC + R PP D
Sbjct: 2576 YSNAVLVLDFQSLYPSIVIAYNYCFSTCLGPVENLGKYDAFKFGCTSLRV----PP--DL 2629
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLETP-KRRICDSYAIDAMTPD 221
+++ I H S + F P + K + + LE K RI ++ A D
Sbjct: 2630 LYQ--IRHDITVSPSGVAFVKPSVRKGVLPRMLEEILKTRIMVKQSMKAYKHD 2680
Score = 39 (18.8 bits), Expect = 1.1e-96, Sum P(2) = 1.1e-96
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 281 PEEDRKVGIILIGQESELP 299
PE+ R++G L+ E+ LP
Sbjct: 1881 PEKPREIGGRLLTVETRLP 1899
>UNIPROTKB|F1LMP6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 IPI:IPI00361212
Ensembl:ENSRNOT00000000725 ArrayExpress:F1LMP6 Uniprot:F1LMP6
Length = 3118
Score = 975 (348.3 bits), Expect = 9.1e-116, Sum P(2) = 9.1e-116
Identities = 182/351 (51%), Positives = 268/351 (76%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
LE + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2362 LEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2421
Query: 407 E--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 460
+ +E R ++ RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2422 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2481
Query: 461 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 520
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2482 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2541
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2542 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2601
Query: 581 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSG 640
DFQSLYPS++IAYNYCFSTCLG +E+LG D F FGC L V L +++ ++T+SP+G
Sbjct: 2602 DFQSLYPSIVIAYNYCFSTCLGHIENLGKYDEFKFGCTSLRVPPDLLYQIRHDITVSPNG 2661
Query: 641 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
VAFV S+R G+LP+ML+EIL TR MVKQSMK Y+ +L MLN+ L
Sbjct: 2662 VAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYRQDRALSR--MLNARQL 2710
Score = 219 (82.2 bits), Expect = 9.1e-116, Sum P(2) = 9.1e-116
Identities = 52/164 (31%), Positives = 96/164 (58%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2245 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2301
Query: 262 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELP--EVRTK-PI-------- 306
PDP +D + A+FY + + P E+ G+I+I ++ + ++R + P+
Sbjct: 2302 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRCQTPLLIRSGVTG 2361
Query: 307 -QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R
Sbjct: 2362 LEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQR 2405
Score = 196 (74.1 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 42/94 (44%), Positives = 59/94 (62%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG +E+LG D F FGC + R PP D
Sbjct: 2594 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHIENLGKYDEFKFGCTSLRV----PP--DL 2647
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLE 203
+++ I H + + F P + K + + LE
Sbjct: 2648 LYQ--IRHDITVSPNGVAFVKPSVRKGVLPRMLE 2679
Score = 39 (18.8 bits), Expect = 9.1e-97, Sum P(2) = 9.1e-97
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 281 PEEDRKVGIILIGQESELPEVRTK---PIQMNFVSNEKELFSTFIENVRQWDP 330
PE+ R++G L+ E+ LP + + + K FS +N R P
Sbjct: 1911 PEKPREIGGRLLMVETRLPNDLIEFEGDFSLEGLRLWKTAFSAMTQNPRPGSP 1963
Score = 39 (18.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
++ +LSR+N ++ +P ++Q
Sbjct: 3094 VLFKLSRVNRELSKAPYLRQ 3113
>UNIPROTKB|F1M8G6 [details] [associations]
symbol:Rev3l "DNA polymerase" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:1307087
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0006281
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 CTD:5980
KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
IPI:IPI00778278 RefSeq:NP_001077435.1 UniGene:Rn.8189
Ensembl:ENSRNOT00000057227 GeneID:309812 KEGG:rno:309812
NextBio:661358 ArrayExpress:F1M8G6 Uniprot:F1M8G6
Length = 3132
Score = 975 (348.3 bits), Expect = 9.2e-116, Sum P(2) = 9.2e-116
Identities = 182/351 (51%), Positives = 268/351 (76%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
LE + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L Q +SR+
Sbjct: 2376 LEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQRAAALSVDLCQMISRVP 2435
Query: 407 E--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERI 460
+ +E R ++ RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+ +HVLH+R
Sbjct: 2436 DDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRIMRNEVALTNYTFENVSFHVLHQRF 2495
Query: 461 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 520
PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF
Sbjct: 2496 PLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMARLFGIQFLH 2555
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580
VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VL
Sbjct: 2556 VLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVL 2615
Query: 581 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSG 640
DFQSLYPS++IAYNYCFSTCLG +E+LG D F FGC L V L +++ ++T+SP+G
Sbjct: 2616 DFQSLYPSIVIAYNYCFSTCLGHIENLGKYDEFKFGCTSLRVPPDLLYQIRHDITVSPNG 2675
Query: 641 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
VAFV S+R G+LP+ML+EIL TR MVKQSMK Y+ +L MLN+ L
Sbjct: 2676 VAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYRQDRALSR--MLNARQL 2724
Score = 219 (82.2 bits), Expect = 9.2e-116, Sum P(2) = 9.2e-116
Identities = 52/164 (31%), Positives = 96/164 (58%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2259 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLQ 2315
Query: 262 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESELP--EVRTK-PI-------- 306
PDP +D + A+FY + + P E+ G+I+I ++ + ++R + P+
Sbjct: 2316 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVTHQDIRCQTPLLIRSGVTG 2375
Query: 307 -QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R
Sbjct: 2376 LEVTYAADEKALFQEVTNIMKRYDPDILLGYEIQMHSWGYLLQR 2419
Score = 196 (74.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/94 (44%), Positives = 59/94 (62%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG +E+LG D F FGC + R PP D
Sbjct: 2608 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHIENLGKYDEFKFGCTSLRV----PP--DL 2661
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLE 203
+++ I H + + F P + K + + LE
Sbjct: 2662 LYQ--IRHDITVSPNGVAFVKPSVRKGVLPRMLE 2693
Score = 39 (18.8 bits), Expect = 9.2e-97, Sum P(2) = 9.2e-97
Identities = 14/53 (26%), Positives = 23/53 (43%)
Query: 281 PEEDRKVGIILIGQESELPEVRTK---PIQMNFVSNEKELFSTFIENVRQWDP 330
PE+ R++G L+ E+ LP + + + K FS +N R P
Sbjct: 1911 PEKPREIGGRLLMVETRLPNDLIEFEGDFSLEGLRLWKTAFSAMTQNPRPGSP 1963
Score = 39 (18.8 bits), Expect = 7.6e-12, Sum P(2) = 7.6e-12
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
++ +LSR+N ++ +P ++Q
Sbjct: 3108 VLFKLSRVNRELSKAPYLRQ 3127
>ZFIN|ZDB-GENE-050302-55 [details] [associations]
symbol:rev3l "REV3-like, catalytic subunit of DNA
polymerase zeta (yeast)" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 ZFIN:ZDB-GENE-050302-55 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:CABZ01061477 EMBL:CABZ01061476
EMBL:CU570797 IPI:IPI00996886 Ensembl:ENSDART00000092264
ArrayExpress:E7FDC5 Bgee:E7FDC5 Uniprot:E7FDC5
Length = 2953
Score = 962 (343.7 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 175/339 (51%), Positives = 256/339 (75%)
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK 410
+ +EKELF +R++DPDIL+GYE++ SWGYLL+R LG+NL Q+LSR+ +
Sbjct: 2199 YTCDEKELFEEVSNIIRKYDPDILVGYEVQMHSWGYLLQRASTLGVNLCQQLSRVPGDSQ 2258
Query: 411 RNS---SRDEV---KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 464
+N +DE T++ + GRI++N+WR+++ E L +YTFEN+ +H+LH+R PL+S
Sbjct: 2259 QNHFIPEKDEYGAETMTEIHITGRIILNIWRIMKTEAALNNYTFENVAFHLLHQRYPLYS 2318
Query: 465 WKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ L+ W++ THL++W ++HY+ RV G ++L++Q D IGRTSE+AR+FGIQFY VL+R
Sbjct: 2319 HRTLSDWFD--THLHRWKVMDHYVSRVCGTVQLLQQQDIIGRTSELARVFGIQFYHVLTR 2376
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 584
GSQ+RVES+MLR+++ N++ V+PS +QRA RA + +PL++EPESR Y++ +IVLDFQS
Sbjct: 2377 GSQYRVESMMLRVAKPMNYIPVTPSTQQRAQQRAAQCIPLVMEPESRFYSNSVIVLDFQS 2436
Query: 585 LYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFV 644
LYPS++IAYNYC+STCLG +E+LG D F FGC L V L +L+ ++T+SP+GVAFV
Sbjct: 2437 LYPSIVIAYNYCYSTCLGHIENLGTYDEFKFGCASLRVPPDLLYQLRNDITVSPNGVAFV 2496
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
S+R G+LP+ML+EIL TR+MVKQSMK Y+ ++L L
Sbjct: 2497 KSSVRRGVLPRMLEEILKTRIMVKQSMKAYRNDKALSRL 2535
Score = 200 (75.5 bits), Expect = 1.8e-112, Sum P(2) = 1.8e-112
Identities = 63/211 (29%), Positives = 107/211 (50%)
Query: 155 CIASRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPKRRICDSYA 214
C + R +S NK+++ ++ K+ I+ N ++ Q+E P C+SY
Sbjct: 2046 CRSQRLHQRSNKNKNALRRVLLSTQ--VKNQLINMNVPKKEN---SQIEGPS--FCNSYG 2098
Query: 215 IDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFY 274
+++ + NL E + E +LT++++E+HA +R L+PDP +D + A+FY
Sbjct: 2099 -----------FKVSMQNLQEAKALHEVQHLTLMSMELHARTRRNLEPDPEFDPICALFY 2147
Query: 275 YLYTCPPEED----RKVGIILIGQES--ELPEVRTK-P---------IQMNFVSNEKELF 318
L + D R G I+I +ES R+ P + + + +EKELF
Sbjct: 2148 CLSSDVLLHDSGTTRIEGAIVIDKESCTSAQASRSSTPFLFRCGVTGLPVTYTCDEKELF 2207
Query: 319 STFIENVRQWDPDILIGYEIETFSWGYLLER 349
+R++DPDIL+GYE++ SWGYLL+R
Sbjct: 2208 EEVSNIIRKYDPDILVGYEVQMHSWGYLLQR 2238
Score = 192 (72.6 bits), Expect = 8.1e-09, Sum P(2) = 8.1e-09
Identities = 32/49 (65%), Positives = 41/49 (83%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASR 159
Y++ +IVLDFQSLYPS++IAYNYC+STCLG +E+LG D F FGC + R
Sbjct: 2425 YSNSVIVLDFQSLYPSIVIAYNYCYSTCLGHIENLGTYDEFKFGCASLR 2473
Score = 39 (18.8 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 184 SSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQM 228
+SQ+D + D K R + + + D AI +M ++ Q+
Sbjct: 355 ASQVDLHQDAVKDTKRDSRKDDEVAVVDEEAILSMLENSQSFLQL 399
Score = 39 (18.8 bits), Expect = 1.8e-96, Sum P(3) = 1.8e-96
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 263 DPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFI 322
DP +D ++ L P+ R I +IGQ +E + + FV +K L F+
Sbjct: 1506 DPGFDSCCSVEDSLSPELPDNYR-FDINVIGQ-TEFSSLYSGN---QFVLTDKILPQKFL 1560
Query: 323 ENVRQWDPDILIG 335
+V Q + L+G
Sbjct: 1561 SDVSQEAANALVG 1573
Score = 37 (18.1 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 7/20 (35%), Positives = 14/20 (70%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
I+ +LSR+N ++ P ++Q
Sbjct: 2928 ILYKLSRVNRNLSRGPYLRQ 2947
>UNIPROTKB|F1P7E8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
Ensembl:ENSCAFT00000006343 Uniprot:F1P7E8
Length = 3058
Score = 985 (351.8 bits), Expect = 8.0e-99, Sum P(3) = 8.0e-99
Identities = 195/411 (47%), Positives = 293/411 (71%)
Query: 281 PEEDRKVGIIL-IGQESELPEV-RTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEI 338
PE D + I ++ LP+ +T+ + + +K + S +++R P +LI I
Sbjct: 2244 PEFDPICALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSS---QDIRYQTP-LLIRSGI 2299
Query: 339 ETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL 398
G LE + +EK LF + ++++DPDIL+GYEI+ SWGYLL+R L ++L
Sbjct: 2300 T----G--LEVTYAPDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDL 2353
Query: 399 NQELSRITE--VEKRNS-SRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIM 452
Q +SR+ + +E R + RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+
Sbjct: 2354 GQMISRVPDDKIENRFAPERDDYGSETMSEINIVGRITLNLWRIMRNEVALTNYTFENVS 2413
Query: 453 YHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMAR 512
+HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMAR
Sbjct: 2414 FHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMAR 2473
Query: 513 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 572
LFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR
Sbjct: 2474 LFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRF 2533
Query: 573 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 632
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++
Sbjct: 2534 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRH 2593
Query: 633 NLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
++T+SP+G+AFV S+R G+LP+ML+EIL TRLMVKQSMK YK +L +
Sbjct: 2594 DITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRM 2644
Score = 228 (85.3 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 65/218 (29%), Positives = 116/218 (53%)
Query: 156 IASRESNQSPPNKDSIHEAEITHPDCSK-SSQIDFNPDLFKSFIRKQ-------LETPKR 207
I R+ + P S+ T P K S + N D F+ + Q + TPK+
Sbjct: 2132 IVQRKFLERLPEASSLSPLS-TEPKTQKLSHKKGSNTDTFRRILLTQAKNQFAAVNTPKK 2190
Query: 208 RICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYD 267
++ ID + + T +++ + NL E + E LT+++VE+HA +R L+PDP +D
Sbjct: 2191 ---ETSQIDGPSLNNTYGFKVSVQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFD 2247
Query: 268 EVKAIFYYLYT-CP-PEEDRK--VGIILIGQESELP--EVRTK-PI---------QMNFV 311
+ A+FY + + P P+ D+ G+I+I ++ + ++R + P+ ++ +
Sbjct: 2248 PICALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITGLEVTYA 2307
Query: 312 SNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+EK LF + ++++DPDIL+GYEI+ SWGYLL+R
Sbjct: 2308 PDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQR 2345
Score = 199 (75.1 bits), Expect = 1.7e-08, Sum P(3) = 1.7e-08
Identities = 48/113 (42%), Positives = 66/113 (58%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC + R PP D
Sbjct: 2534 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRV----PP--DL 2587
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLETP-KRRICDSYAIDAMTPD 221
+++ I H + I F P + K + + LE K R+ ++ A D
Sbjct: 2588 LYQ--IRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQD 2638
Score = 39 (18.8 bits), Expect = 8.0e-99, Sum P(3) = 8.0e-99
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 158 SRESNQSPPNKDSIHEAEITHP 179
+R S+++ K+S + ++++HP
Sbjct: 615 NRHSSENTLGKNSFNFSDLSHP 636
Score = 39 (18.8 bits), Expect = 8.0e-99, Sum P(3) = 8.0e-99
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 188 DFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEV 236
+F P+ K + + + + + + TP G+ Q GL L E+
Sbjct: 1409 NFKPERVKQRSLSEAISQTKALSQCKSRNVSTPSAFGEGQSGLAVLKEL 1457
Score = 39 (18.8 bits), Expect = 1.4e-11, Sum P(3) = 1.4e-11
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
++ +LSR+N ++ +P ++Q
Sbjct: 3034 VLFKLSRVNRELSKAPYLRQ 3053
Score = 37 (18.1 bits), Expect = 1.2e-97, Sum P(2) = 1.2e-97
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 53 RIRRDSMKGIVDVKCFEESSLERSMKPDDRPSPTRKNKST 92
++ ++ G+V K E S S+ PDD+P K +T
Sbjct: 1945 KLSKNEPTGVV--KSAENFS--SSVNPDDKPVVPPKMSTT 1980
>UNIPROTKB|F1P7D5 [details] [associations]
symbol:REV3L "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0016035 "zeta DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 CTD:5980 KO:K02350 OMA:DGTADEN GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:AAEX03008609 EMBL:AAEX03008610
RefSeq:XP_539084.3 Ensembl:ENSCAFT00000006350 GeneID:481963
KEGG:cfa:481963 Uniprot:F1P7D5
Length = 3136
Score = 985 (351.8 bits), Expect = 9.1e-99, Sum P(3) = 9.1e-99
Identities = 195/411 (47%), Positives = 293/411 (71%)
Query: 281 PEEDRKVGIIL-IGQESELPEV-RTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEI 338
PE D + I ++ LP+ +T+ + + +K + S +++R P +LI I
Sbjct: 2322 PEFDPICALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSS---QDIRYQTP-LLIRSGI 2377
Query: 339 ETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL 398
G LE + +EK LF + ++++DPDIL+GYEI+ SWGYLL+R L ++L
Sbjct: 2378 T----G--LEVTYAPDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQRAAALSVDL 2431
Query: 399 NQELSRITE--VEKRNS-SRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIM 452
Q +SR+ + +E R + RD+ + +++ + GRI +NLWR++R+EV L +YTFEN+
Sbjct: 2432 GQMISRVPDDKIENRFAPERDDYGSETMSEINIVGRITLNLWRIMRNEVALTNYTFENVS 2491
Query: 453 YHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMAR 512
+HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMAR
Sbjct: 2492 FHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMAR 2551
Query: 513 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 572
LFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR
Sbjct: 2552 LFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRF 2611
Query: 573 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 632
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++
Sbjct: 2612 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRH 2671
Query: 633 NLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
++T+SP+G+AFV S+R G+LP+ML+EIL TRLMVKQSMK YK +L +
Sbjct: 2672 DITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQDRALSRM 2722
Score = 228 (85.3 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 65/218 (29%), Positives = 116/218 (53%)
Query: 156 IASRESNQSPPNKDSIHEAEITHPDCSK-SSQIDFNPDLFKSFIRKQ-------LETPKR 207
I R+ + P S+ T P K S + N D F+ + Q + TPK+
Sbjct: 2210 IVQRKFLERLPEASSLSPLS-TEPKTQKLSHKKGSNTDTFRRILLTQAKNQFAAVNTPKK 2268
Query: 208 RICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYD 267
++ ID + + T +++ + NL E + E LT+++VE+HA +R L+PDP +D
Sbjct: 2269 ---ETSQIDGPSLNNTYGFKVSVQNLQEAKALHEIQNLTLISVELHARTRRDLEPDPEFD 2325
Query: 268 EVKAIFYYLYT-CP-PEEDRK--VGIILIGQESELP--EVRTK-PI---------QMNFV 311
+ A+FY + + P P+ D+ G+I+I ++ + ++R + P+ ++ +
Sbjct: 2326 PICALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITGLEVTYA 2385
Query: 312 SNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+EK LF + ++++DPDIL+GYEI+ SWGYLL+R
Sbjct: 2386 PDEKALFQEIADIIKRYDPDILLGYEIQMHSWGYLLQR 2423
Score = 199 (75.1 bits), Expect = 1.8e-08, Sum P(3) = 1.8e-08
Identities = 48/113 (42%), Positives = 66/113 (58%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC + R PP D
Sbjct: 2612 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRV----PP--DL 2665
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLETP-KRRICDSYAIDAMTPD 221
+++ I H + I F P + K + + LE K R+ ++ A D
Sbjct: 2666 LYQ--IRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQD 2716
Score = 39 (18.8 bits), Expect = 9.1e-99, Sum P(3) = 9.1e-99
Identities = 6/22 (27%), Positives = 16/22 (72%)
Query: 158 SRESNQSPPNKDSIHEAEITHP 179
+R S+++ K+S + ++++HP
Sbjct: 693 NRHSSENTLGKNSFNFSDLSHP 714
Score = 39 (18.8 bits), Expect = 9.1e-99, Sum P(3) = 9.1e-99
Identities = 11/49 (22%), Positives = 21/49 (42%)
Query: 188 DFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEV 236
+F P+ K + + + + + + TP G+ Q GL L E+
Sbjct: 1487 NFKPERVKQRSLSEAISQTKALSQCKSRNVSTPSAFGEGQSGLAVLKEL 1535
Score = 39 (18.8 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
++ +LSR+N ++ +P ++Q
Sbjct: 3112 VLFKLSRVNRELSKAPYLRQ 3131
Score = 37 (18.1 bits), Expect = 1.3e-97, Sum P(2) = 1.3e-97
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 53 RIRRDSMKGIVDVKCFEESSLERSMKPDDRPSPTRKNKST 92
++ ++ G+V K E S S+ PDD+P K +T
Sbjct: 2023 KLSKNEPTGVV--KSAENFS--SSVNPDDKPVVPPKMSTT 2058
>UNIPROTKB|E1BPY8 [details] [associations]
symbol:REV3L "DNA polymerase" species:9913 "Bos taurus"
[GO:0016035 "zeta DNA polymerase complex" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0006281 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:DAAA02025892 EMBL:DAAA02025893
EMBL:DAAA02025894 EMBL:DAAA02025895 IPI:IPI00923965
Ensembl:ENSBTAT00000060948 Uniprot:E1BPY8
Length = 3133
Score = 978 (349.3 bits), Expect = 8.1e-98, Sum P(2) = 8.1e-98
Identities = 193/403 (47%), Positives = 289/403 (71%)
Query: 281 PEEDRKVGIIL-IGQESELPEV-RTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEI 338
PE D + I ++ LP+ +T+ + + +K + S +++R P +LI I
Sbjct: 2319 PEFDPICALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSS---QDIRYQTP-LLIRSGI 2374
Query: 339 ETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL 398
G L+ + ++EK LF ++++DPDILIGYEI+ SWGYLL+R L ++L
Sbjct: 2375 T----G--LQVTYAADEKTLFQEIANIIKRYDPDILIGYEIQMHSWGYLLQRAAALSVDL 2428
Query: 399 NQELSRITEVEKRN---SSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIM 452
Q +SR+ + + N + RDE + +++ + GRI +NLWR++R+EV L +YTFEN+
Sbjct: 2429 CQMISRVPDDKTENRFAAERDEYGSDVMSEINIVGRITLNLWRIMRNEVALNNYTFENVS 2488
Query: 453 YHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMAR 512
+HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMAR
Sbjct: 2489 FHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQMLEQLDLIGKTSEMAR 2548
Query: 513 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 572
LFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR
Sbjct: 2549 LFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRF 2608
Query: 573 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 632
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++
Sbjct: 2609 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQIRH 2668
Query: 633 NLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
++T+SP+G+AFV S+R G+LP+ML+EIL TRLMVK+SMK YK
Sbjct: 2669 DITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKRSMKAYK 2711
Score = 227 (85.0 bits), Expect = 3.1e-12, Sum P(3) = 3.1e-12
Identities = 55/164 (33%), Positives = 98/164 (59%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
+ TPK+ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2260 VNTPKK---ETSQIDGPSLNNTYGFKVSIQNLEEAKALHEIQNLTLISVELHARTRRDLE 2316
Query: 262 PDPAYDEVKAIFYYLYT-CP-PEEDRK--VGIILIGQESELP--EVRTK-PI-------- 306
PDP +D + A+FY + + P P+ D+ G+I+I ++ + ++R + P+
Sbjct: 2317 PDPEFDPICALFYCISSDTPLPDTDKTELTGVIVIDKDKTVSSQDIRYQTPLLIRSGITG 2376
Query: 307 -QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
Q+ + ++EK LF ++++DPDILIGYEI+ SWGYLL+R
Sbjct: 2377 LQVTYAADEKTLFQEIANIIKRYDPDILIGYEIQMHSWGYLLQR 2420
Score = 198 (74.8 bits), Expect = 1.1e-08, Sum P(3) = 1.1e-08
Identities = 44/94 (46%), Positives = 59/94 (62%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC + R PP D
Sbjct: 2609 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRV----PP--DL 2662
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLE 203
+++ I H + I F P + K + + LE
Sbjct: 2663 LYQ--IRHDITVSPNGIAFVKPSVRKGVLPRMLE 2694
Score = 46 (21.3 bits), Expect = 8.1e-98, Sum P(2) = 8.1e-98
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 158 SRESNQSPPNKDSIHEAEITHPDCSKSSQ 186
SR +N+S K+S++ +++ H SS+
Sbjct: 694 SRHTNESTLGKNSLNFSDLNHSKSKLSSE 722
Score = 41 (19.5 bits), Expect = 2.7e-97, Sum P(2) = 2.7e-97
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 65 VKCFEESSLERSMKPDDRPSPTRKNKST 92
VK E+ S S+ PDDRP K +T
Sbjct: 2035 VKSAEDFS--SSVNPDDRPVAPPKMDTT 2060
Score = 38 (18.4 bits), Expect = 3.1e-12, Sum P(3) = 3.1e-12
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
++ +LSR+N ++ +P ++Q
Sbjct: 3109 VLYKLSRVNRELSKAPYLRQ 3128
>UNIPROTKB|O60673 [details] [associations]
symbol:REV3L "DNA polymerase zeta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0051539 "4 iron, 4 sulfur
cluster binding" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006261 "DNA-dependent DNA
replication" evidence=TAS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0051539 GO:GO:0006261
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 EMBL:AF058701 EMBL:AF071798 EMBL:AF157476
EMBL:AF179428 EMBL:AF179429 EMBL:AF078695 EMBL:AY684169
EMBL:AL080317 EMBL:AL136310 EMBL:AL512325 EMBL:AF035537
IPI:IPI00248651 IPI:IPI00745230 RefSeq:NP_002903.3
UniGene:Hs.232021 PDB:3ABD PDB:3ABE PDB:3VU7 PDBsum:3ABD
PDBsum:3ABE PDBsum:3VU7 ProteinModelPortal:O60673 SMR:O60673
IntAct:O60673 STRING:O60673 PhosphoSite:O60673 PaxDb:O60673
PRIDE:O60673 Ensembl:ENST00000358835 Ensembl:ENST00000368802
Ensembl:ENST00000368805 Ensembl:ENST00000435970 GeneID:5980
KEGG:hsa:5980 UCSC:uc003pux.4 CTD:5980 GeneCards:GC06M111665
H-InvDB:HIX0017582 HGNC:HGNC:9968 MIM:602776 neXtProt:NX_O60673
PharmGKB:PA34337 HOGENOM:HOG000112263 HOVERGEN:HBG000426
InParanoid:O60673 KO:K02350 OMA:DGTADEN OrthoDB:EOG4NVZJD
PhylomeDB:O60673 ChiTaRS:REV3L EvolutionaryTrace:O60673
GenomeRNAi:5980 NextBio:23277 ArrayExpress:O60673 Bgee:O60673
CleanEx:HS_REV3L Genevestigator:O60673 GermOnline:ENSG00000009413
GO:GO:0016035 Uniprot:O60673
Length = 3130
Score = 985 (351.8 bits), Expect = 1.7e-97, P = 1.7e-97
Identities = 196/411 (47%), Positives = 294/411 (71%)
Query: 281 PEEDRKVGIIL-IGQESELPEV-RTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEI 338
PE D + I ++ LP+ +T+ + + +K +FS +++R P +LI I
Sbjct: 2316 PEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVFS---QDIRYQTP-LLIRSGI 2371
Query: 339 ETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL 398
G LE + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R L ++L
Sbjct: 2372 T----G--LEVTYAADEKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQRAAALSIDL 2425
Query: 399 NQELSRITE--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIM 452
+ +SR+ + +E R ++ RDE + +++ + GRI +NLWR++R+EV L +YTFEN+
Sbjct: 2426 CRMISRVPDDKIENRFAAERDEYGSYTMSEINIVGRITLNLWRIMRNEVALTNYTFENVS 2485
Query: 453 YHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMAR 512
+HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV G ++++EQLD IG+TSEMAR
Sbjct: 2486 FHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYVSRVRGNLQMLEQLDLIGKTSEMAR 2545
Query: 513 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 572
LFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ MRAP+ +PLI+EPESR
Sbjct: 2546 LFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQMRAPQCVPLIMEPESRF 2605
Query: 573 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 632
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC L V L +++
Sbjct: 2606 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRVPPDLLYQVRH 2665
Query: 633 NLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
++T+SP+GVAFV S+R G+LP+ML+EIL TR MVKQSMK YK +L +
Sbjct: 2666 DITVSPNGVAFVKPSVRKGVLPRMLEEILKTRFMVKQSMKAYKQDRALSRM 2716
Score = 216 (81.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 51/164 (31%), Positives = 96/164 (58%)
Query: 202 LETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLK 261
+ TP++ ++ ID + + T +++ + NL E + E LT+++VE+HA +R L+
Sbjct: 2257 VNTPQK---ETSQIDGPSLNNTYGFKVSIQNLQEAKALHEIQNLTLISVELHARTRRDLE 2313
Query: 262 PDPAYDEVKAIFYYLYTCPP----EEDRKVGIILIGQESEL--PEVRTK-PI-------- 306
PDP +D + A+FY + + P E+ G+I+I ++ + ++R + P+
Sbjct: 2314 PDPEFDPICALFYCISSDTPLPDTEKTELTGVIVIDKDKTVFSQDIRYQTPLLIRSGITG 2373
Query: 307 -QMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ + ++EK LF ++++DPDIL+GYEI+ SWGYLL+R
Sbjct: 2374 LEVTYAADEKALFHEIANIIKRYDPDILLGYEIQMHSWGYLLQR 2417
Score = 196 (74.1 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/94 (44%), Positives = 59/94 (62%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC + R PP D
Sbjct: 2606 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKYDEFKFGCTSLRV----PP--DL 2659
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLE 203
+++ + H + + F P + K + + LE
Sbjct: 2660 LYQ--VRHDITVSPNGVAFVKPSVRKGVLPRMLE 2691
Score = 39 (18.8 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
++ +LSR+N ++ +P ++Q
Sbjct: 3106 VLFKLSRVNRELSKAPYLRQ 3125
>FB|FBgn0002891 [details] [associations]
symbol:mus205 "mutagen-sensitive 205" species:7227
"Drosophila melanogaster" [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS;IBA;NAS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;IDA;NAS] [GO:0006260 "DNA replication"
evidence=IEA;NAS] [GO:0019985 "translesion synthesis"
evidence=IBA;NAS] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IDA] [GO:0000724 "double-strand
break repair via homologous recombination" evidence=IMP]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 EMBL:AE013599 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0000724 SUPFAM:SSF53098 GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 GeneTree:ENSGT00550000074640
FlyBase:FBgn0002891 EMBL:AF298216 RefSeq:NP_524881.2
UniGene:Dm.10622 SMR:Q9GSR1 MINT:MINT-864058 STRING:Q9GSR1
EnsemblMetazoa:FBtr0088831 GeneID:47186 KEGG:dme:Dmel_CG1925
UCSC:CG1925-RA CTD:47186 InParanoid:Q9GSR1 OMA:IPPLNRC
GenomeRNAi:47186 NextBio:838931 Uniprot:Q9GSR1
Length = 2130
Score = 937 (334.9 bits), Expect = 6.1e-96, Sum P(3) = 6.1e-96
Identities = 187/344 (54%), Positives = 249/344 (72%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
+E V++E E F + +WD DI GYEIE SWGY+++R L N+ LSR+
Sbjct: 1369 IEVQVVTSEAEAFEALLALCERWDADIYAGYEIEMSSWGYVIDRAKHLCFNIAPLLSRVP 1428
Query: 407 EVEKRN---SSRDEVKNTQLQMP--GRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP 461
+ R+ R++ + ++M GRI++++WRL+R E+ L SYTFEN+MYH+LH+R P
Sbjct: 1429 TQKVRDFVDEDREQFTDLDVEMKLCGRILLDVWRLMRSEIALTSYTFENVMYHILHKRCP 1488
Query: 462 LHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEV 521
H+ K LT W+ + +W+ +E+YL RV G + L++QLD +GRTSEMA+L GIQFYEV
Sbjct: 1489 WHTAKSLTEWFG--SPCTRWIVMEYYLERVRGTLTLLDQLDLLGRTSEMAKLIGIQFYEV 1546
Query: 522 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 581
LSRGSQFRVES+MLR+++ N V +SPS++ RAHMRAPE L LI+EP+SR Y DP+IVLD
Sbjct: 1547 LSRGSQFRVESMMLRIAKPKNLVPLSPSVQARAHMRAPEYLALIMEPQSRFYADPLIVLD 1606
Query: 582 FQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQN--LTISPS 639
FQSLYPS+IIAYNYCFSTCLGRVEHLG S F FG L VS + L+KL ++ +T+SP
Sbjct: 1607 FQSLYPSMIIAYNYCFSTCLGRVEHLGGSSPFEFGASQLRVSRQMLQKLLEHDLVTVSPC 1666
Query: 640 GVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
GV FV + +R GILP+ML EILDTR MVKQSMK +K S +L+ +
Sbjct: 1667 GVVFVKREVREGILPRMLTEILDTRQMVKQSMKLHKDSSALQRI 1710
Score = 235 (87.8 bits), Expect = 1.8e-15, P = 1.8e-15
Identities = 68/225 (30%), Positives = 122/225 (54%)
Query: 162 NQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLE-TPKRRICD-SYAIDAMT 219
++ PP+ S E ++ S ++Q + + SF+R QLE + + R D S+ + T
Sbjct: 1224 DEEPPSSQS-SEQSVS----SSAAQAELDRS---SFLR-QLEGSSQDRQHDLSFGLSHAT 1274
Query: 220 PDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYL-YT 278
D T +++ L+NL + + ++ +LT++ +E+ +R L+PDP +DE++ +FY + ++
Sbjct: 1275 LDNTFGFKVNLENLQQAKADIDCNHLTIITLEVFVSTRGDLQPDPMHDEIRCLFYAIEHS 1334
Query: 279 CPPEE--DRKVGIILIG--QE--SELP-EVRTKPIQMNFVSNEKELFSTFIENVRQWDPD 331
P E+ + G I++ Q+ SE P + I++ V++E E F + +WD D
Sbjct: 1335 LPDEKLPSKACGYIMVNTVQDLLSEGPFHGIDRDIEVQVVTSEAEAFEALLALCERWDAD 1394
Query: 332 ILIGYEIETFSWGYLLER--HFVSNEKELFS-IFIENVRQW-DPD 372
I GYEIE SWGY+++R H N L S + + VR + D D
Sbjct: 1395 IYAGYEIEMSSWGYVIDRAKHLCFNIAPLLSRVPTQKVRDFVDED 1439
Score = 209 (78.6 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 40/53 (75%), Positives = 42/53 (79%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQ 163
Y DP+IVLDFQSLYPS+IIAYNYCFSTCLGRVEHLG S F FG R S Q
Sbjct: 1598 YADPLIVLDFQSLYPSMIIAYNYCFSTCLGRVEHLGGSSPFEFGASQLRVSRQ 1650
Score = 50 (22.7 bits), Expect = 6.1e-96, Sum P(3) = 6.1e-96
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 280 PPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIEN 324
PPE + + ES PE+ + + + N +FS F+++
Sbjct: 935 PPETETTPQLSPKSNESNTPELMRSFYEHSLIVNSPSVFSDFLDS 979
Score = 40 (19.1 bits), Expect = 6.1e-96, Sum P(3) = 6.1e-96
Identities = 9/41 (21%), Positives = 22/41 (53%)
Query: 201 QLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVE 241
++E P R + A+D + P + +++ N +E +S ++
Sbjct: 736 EIERPHRS--EGSALDELKPRRSARHKVNSANPDECSSEIQ 774
Score = 39 (18.8 bits), Expect = 2.1e-93, Sum P(2) = 2.1e-93
Identities = 11/30 (36%), Positives = 13/30 (43%)
Query: 173 EAEITHPDCSKSSQIDFNPDLFKSFIRKQL 202
E E T P S S P+L +SF L
Sbjct: 937 ETETT-PQLSPKSNESNTPELMRSFYEHSL 965
>UNIPROTKB|I3L6U8 [details] [associations]
symbol:LOC100737059 "DNA polymerase" species:9823 "Sus
scrofa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GeneTree:ENSGT00550000074640 EMBL:FP102400 RefSeq:XP_003480350.1
Ensembl:ENSSSCT00000026193 GeneID:100737059 KEGG:ssc:100737059
OMA:KATISQY Uniprot:I3L6U8
Length = 721
Score = 906 (324.0 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
Identities = 165/307 (53%), Positives = 241/307 (78%)
Query: 383 SWGYLLERGYVLGLNLNQELSRITE--VEKRNSS-RDEVKN---TQLQMPGRIVINLWRL 436
SWGYLL+R L ++L Q +SR+ + +E R ++ RD+ + +++ + GRI +NLWR+
Sbjct: 3 SWGYLLQRAAALSVDLCQMISRVPDDKIENRFAAERDDYGSDTMSEINIVGRITLNLWRI 62
Query: 437 LRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIR 496
+R+EV L +YTFEN+ +HVLH+R PL ++++L+ W++++T LY+W V+HY+ RV G ++
Sbjct: 63 MRNEVALNNYTFENVSFHVLHQRFPLFTFRVLSDWFDNKTDLYRWKMVDHYISRVRGNLQ 122
Query: 497 LIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHM 556
++EQLD IG+TSEMARLFGIQF VL+RGSQ+RVES+MLR+++ N++ V+PS++QR+ M
Sbjct: 123 MLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNYIPVTPSVQQRSQM 182
Query: 557 RAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFG 616
RAP+ +PLI+EPESR Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FG
Sbjct: 183 RAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKHDEFKFG 242
Query: 617 CIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKF 676
C L V L +++ ++T+SP+G+AFV S+R G+LP+ML+EIL TRLMVKQSMK YK
Sbjct: 243 CTSLRVPPDLLYQIRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQ 302
Query: 677 SESLRNL 683
+L +
Sbjct: 303 DRALSRM 309
Score = 200 (75.5 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 48/113 (42%), Positives = 66/113 (58%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG D F FGC + R PP D
Sbjct: 199 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLGKHDEFKFGCTSLRV----PP--DL 252
Query: 171 IHEAEITHPDCSKSSQIDF-NPDLFKSFIRKQLETP-KRRICDSYAIDAMTPD 221
+++ I H + I F P + K + + LE K R+ ++ A D
Sbjct: 253 LYQ--IRHDITVSPNGIAFVKPSVRKGVLPRMLEEILKTRLMVKQSMKAYKQD 303
Score = 43 (20.2 bits), Expect = 2.3e-93, Sum P(2) = 2.3e-93
Identities = 7/8 (87%), Positives = 8/8 (100%)
Query: 342 SWGYLLER 349
SWGYLL+R
Sbjct: 3 SWGYLLQR 10
Score = 38 (18.4 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 533 IMLRLSRLNNFVAVSPSIKQ 552
++ +LSR+N ++ +P ++Q
Sbjct: 697 VLYKLSRVNRELSKAPYLRQ 716
>ASPGD|ASPL0000070569 [details] [associations]
symbol:uvsI species:162425 "Emericella nidulans"
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISA] [GO:0006281 "DNA repair" evidence=IMP]
[GO:0042276 "error-prone translesion synthesis" evidence=ISA;IMP]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0000790
"nuclear chromatin" evidence=IEA] [GO:0070987 "error-free
translesion synthesis" evidence=IEA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:BN001303 GO:GO:0003887
EMBL:AACD01000081 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 HOGENOM:HOG000194392
RefSeq:XP_662393.1 ProteinModelPortal:G5EB69
EnsemblFungi:CADANIAT00005633 GeneID:2872590 KEGG:ani:AN4789.2
OMA:INIWRAM Uniprot:G5EB69
Length = 1681
Score = 692 (248.7 bits), Expect = 6.1e-84, Sum P(3) = 6.1e-84
Identities = 147/345 (42%), Positives = 213/345 (61%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV-LGLNLNQELSRITEVEKR 411
S E +L + ++ VR DPDI+ GYE+ SWG+++ER +L ELSR+
Sbjct: 914 STELDLINRLVDIVRLHDPDIITGYEVHNSSWGFIIERARKKYDFDLCDELSRVKSHAHG 973
Query: 412 NSSRDEVK-----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWK 466
++ K + +++ GR +IN+WR +R E+NL YT EN+++H+LH RIP +S++
Sbjct: 974 RFGKEADKWGFDHTSSIRITGRHIINIWRAMRSEMNLLQYTMENVVFHLLHRRIPHYSFR 1033
Query: 467 LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
LT W++ + +Y RV I ++ + I RTSE ARL GI FY V SRGS
Sbjct: 1034 DLTAWYQSDKPRDFMKVINYYTSRVQMNIEILNANELIPRTSEQARLLGIDFYSVFSRGS 1093
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
QF+VES+M R+++ NF+ VSPS KQ A E LPL++EP+S YT P+IVLDFQSLY
Sbjct: 1094 QFKVESLMFRIAKPENFILVSPSRKQVGQQNALECLPLVMEPQSDFYTSPLIVLDFQSLY 1153
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDK 646
PS++IAYNYC+ST LGRV+ + F +D N R L+ L+ ++ I+P+G+ +
Sbjct: 1154 PSIMIAYNYCYSTFLGRVQSWRGRNKMGF--LDYNRPPRLLELLKDHINIAPNGMIYARS 1211
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
+R +L KML EIL+TR+MVK MK K +L+ L LN+ L
Sbjct: 1212 EVRKSLLAKMLTEILETRVMVKTGMKVDKDDRALQRL--LNNRQL 1254
Score = 178 (67.7 bits), Expect = 6.1e-84, Sum P(3) = 6.1e-84
Identities = 38/118 (32%), Positives = 69/118 (58%)
Query: 241 ENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTC--PPEEDRKVGIILIGQ---- 294
+ Y++ +++E+H +R +L P+P DE+ A F+ + + P EED + ++ +G
Sbjct: 834 QTQYMSTMSLEVHVNTRGVLLPNPEEDEIAAFFWCVNSEDEPQEEDDSLSVVNMGVVFQG 893
Query: 295 ESELPEVR-TKPIQMN--FVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
E E PE + +K ++ S E +L + ++ VR DPDI+ GYE+ SWG+++ER
Sbjct: 894 EEEYPESKISKALRFECEHESTELDLINRLVDIVRLHDPDIITGYEVHNSSWGFIIER 951
Score = 149 (57.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 35/76 (46%), Positives = 44/76 (57%)
Query: 70 ESSLERSMKPDD--RPSPTRKNKSTXXXXXXXXXXXXXXXXXLYTDPIIVLDFQSLYPSV 127
ES + R KP++ SP+RK YT P+IVLDFQSLYPS+
Sbjct: 1098 ESLMFRIAKPENFILVSPSRKQVGQQNALECLPLVMEPQSD-FYTSPLIVLDFQSLYPSI 1156
Query: 128 IIAYNYCFSTCLGRVE 143
+IAYNYC+ST LGRV+
Sbjct: 1157 MIAYNYCYSTFLGRVQ 1172
Score = 46 (21.3 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 19/71 (26%), Positives = 31/71 (43%)
Query: 261 KPDPAYDEVKAIFYYLYTCPPEE---DRKVGIILIGQESELPEVRTKPIQMNFVSNEKEL 317
+ +P Y E + Y + T P DR V + Q+++L I N + + +
Sbjct: 1472 RAEPQYGE--RVPYVVVTGAPGSRLIDRCVPPETLLQDAQLDLDAEYYITKNIIPPLERI 1529
Query: 318 FSTFIENVRQW 328
F+ NVRQW
Sbjct: 1530 FNLVGANVRQW 1540
Score = 44 (20.5 bits), Expect = 4.9e-08, Sum P(3) = 4.9e-08
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 345 YLLERHFVSNEKELFSIFIENVRQW 369
Y + ++ + + +F++ NVRQW
Sbjct: 1516 YYITKNIIPPLERIFNLVGANVRQW 1540
Score = 41 (19.5 bits), Expect = 6.1e-84, Sum P(3) = 6.1e-84
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 213 YAIDAMTPDTTGDY 226
Y+IDA PD DY
Sbjct: 692 YSIDADVPDRPRDY 705
Score = 41 (19.5 bits), Expect = 9.8e-08, Sum P(3) = 9.8e-08
Identities = 10/43 (23%), Positives = 25/43 (58%)
Query: 362 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR 404
FI +V +W +++ G + ++L + YL R ++ +E+++
Sbjct: 1298 FIHSVERWGAEVVYG-DTDSL-FVYLKGRTRDQAFDIGEEIAQ 1338
Score = 39 (18.8 bits), Expect = 8.2e-05, Sum P(3) = 8.2e-05
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 300 EVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIG 335
E+ +Q + EK + FI +V +W +++ G
Sbjct: 1279 EIADSIVQSGRETLEKAI--AFIHSVERWGAEVVYG 1312
>UNIPROTKB|G4NL37 [details] [associations]
symbol:MGG_02986 "DNA polymerase" species:242507
"Magnaporthe oryzae 70-15" [GO:0009405 "pathogenesis" evidence=IMP]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0009405
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
EMBL:CM001237 GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 RefSeq:XP_003720713.1
EnsemblFungi:MGG_02986T0 GeneID:2682539 KEGG:mgr:MGG_02986
Uniprot:G4NL37
Length = 1782
Score = 705 (253.2 bits), Expect = 1.3e-83, Sum P(2) = 1.3e-83
Identities = 158/355 (44%), Positives = 219/355 (61%)
Query: 344 GYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL-GLNLNQEL 402
G LLE ++E +L +E VR DPDIL GYE+ SWGYL+ER + NL E
Sbjct: 937 GELLEE---TSELDLMVRMVEIVRTHDPDILTGYEVHGGSWGYLIERARCMYDYNLCDEF 993
Query: 403 SRITEVEKRNSSRDEVK---NTQ--LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH 457
SR+ +D + NT +++ GR +IN+WR +R E+NL YT EN+++H+LH
Sbjct: 994 SRMKSQSHGRYGKDADRWGFNTTSTIRVTGRHMINIWRAMRGELNLLQYTMENVVWHLLH 1053
Query: 458 ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQ 517
RIP +SW+ LT W+ H + +Y R I ++E+ I RTSE ARL G+
Sbjct: 1054 RRIPHYSWQTLTTWYGSGRHGDLDKLLRYYQTRTRLDIEILEENGLISRTSEQARLLGVD 1113
Query: 518 FYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPI 577
F+ V SRGSQF+VESIM R+++ NF+ VSPS KQ A E LPL++EP+S Y P+
Sbjct: 1114 FFSVFSRGSQFKVESIMFRIAKPENFMLVSPSRKQVGGQNALECLPLVMEPQSAFYNSPV 1173
Query: 578 IVLDFQSLYPSVIIAYNYCFSTCLGR-VEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTI 636
+VLDFQSLYPSV+IAYNYC+ST LGR V+ G + G + R L+ LQ+++ I
Sbjct: 1174 LVLDFQSLYPSVMIAYNYCYSTFLGRIVDWRGTNK---MGFAEYRRRKRLLELLQEHINI 1230
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
+P+GV + IR +L KML EIL+TR+MVK MK+ K ++L+ L LN+ L
Sbjct: 1231 APNGVMYTKPEIRKSLLAKMLTEILETRVMVKSGMKQDKDDKTLQQL--LNNRQL 1283
Score = 178 (67.7 bits), Expect = 1.3e-83, Sum P(2) = 1.3e-83
Identities = 45/145 (31%), Positives = 72/145 (49%)
Query: 215 IDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFY 274
I+ TP ++ H E Y++ +++EIH +R L PDP DEVK IF+
Sbjct: 837 IEGATPKNKHGFRYSQKQKTTSVQH-EVAYMSTMSIEIHVNTRGKLVPDPEKDEVKCIFW 895
Query: 275 YLYTCPPEEDR--------KVGIILIGQESELPEVRTKPIQMNFV--SNEKELFSTFIEN 324
+ + + + G++++ +E L E I+ + ++E +L +E
Sbjct: 896 CVRSDDKSNEASSQAPDGLQSGVVVLSEEGTLAERIKHQIKGELLEETSELDLMVRMVEI 955
Query: 325 VRQWDPDILIGYEIETFSWGYLLER 349
VR DPDIL GYE+ SWGYL+ER
Sbjct: 956 VRTHDPDILTGYEVHGGSWGYLIER 980
Score = 142 (55.0 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 33/75 (44%), Positives = 42/75 (56%)
Query: 70 ESSLERSMKPDD--RPSPTRKNKSTXXXXXXXXXXXXXXXXXLYTDPIIVLDFQSLYPSV 127
ES + R KP++ SP+RK Y P++VLDFQSLYPSV
Sbjct: 1127 ESIMFRIAKPENFMLVSPSRKQVG-GQNALECLPLVMEPQSAFYNSPVLVLDFQSLYPSV 1185
Query: 128 IIAYNYCFSTCLGRV 142
+IAYNYC+ST LGR+
Sbjct: 1186 MIAYNYCYSTFLGRI 1200
Score = 39 (18.8 bits), Expect = 5.1e-08, Sum P(2) = 5.1e-08
Identities = 12/51 (23%), Positives = 28/51 (54%)
Query: 362 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR-ITEVEKR 411
FI +V +W +++ G + ++L + +L R + E+++ IT++ R
Sbjct: 1327 FIHSVPRWGAEVVYG-DTDSL-FIHLKGRTKEQAFEIGNEMAKAITDMNPR 1375
>SGD|S000006088 [details] [associations]
symbol:REV3 "Catalytic subunit of DNA polymerase zeta"
species:4932 "Saccharomyces cerevisiae" [GO:0006281 "DNA repair"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IDA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0000790 "nuclear chromatin"
evidence=IPI] [GO:0070987 "error-free translesion synthesis"
evidence=IDA] [GO:0042276 "error-prone translesion synthesis"
evidence=IGI;IDA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 SGD:S000006088
GO:GO:0005739 GO:GO:0005634 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0006260 GO:GO:0051539 EMBL:BK006949
SUPFAM:SSF53098 EMBL:X96770 GO:GO:0003887 GO:GO:0070987
GO:GO:0042276 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 HOGENOM:HOG000194392 OrthoDB:EOG4FN7RT
EMBL:M29683 EMBL:Z73523 PIR:A33602 RefSeq:NP_015158.1
ProteinModelPortal:P14284 SMR:P14284 IntAct:P14284
MINT:MINT-2731570 STRING:P14284 PRIDE:P14284 EnsemblFungi:YPL167C
GeneID:855936 KEGG:sce:YPL167C CYGD:YPL167c OMA:DRWGYTH
NextBio:980687 Genevestigator:P14284 GermOnline:YPL167C
Uniprot:P14284
Length = 1504
Score = 627 (225.8 bits), Expect = 7.4e-75, Sum P(2) = 7.4e-75
Identities = 129/327 (39%), Positives = 205/327 (62%)
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLG-LNLNQELSRIT-EV 408
F +E E+F + V DPDIL G+EI SWGY++ER + ++ +EL+R+ ++
Sbjct: 741 FYESEFEMFEALTDLVLLLDPDILSGFEIHNFSWGYIIERCQKIHQFDIVRELARVKCQI 800
Query: 409 E-KRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
+ K + + ++ + + GR +IN+WR LR +VNL YT E+ +++LH+R+P S++
Sbjct: 801 KTKLSDTWGYAHSSGIMITGRHMINIWRALRSDVNLTQYTIESAAFNILHKRLPHFSFES 860
Query: 468 LTCWWEHRTHLYKWMTVEHY-LIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
LT W + + TV +Y L R I+L+ + D+I R E ARL GI F+ V RGS
Sbjct: 861 LTNMWNAKKSTTELKTVLNYWLSRAQINIQLLRKQDYIARNIEQARLIGIDFHSVYYRGS 920
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
QF+VES ++R+ + +F+ +SP K +A E +PL++EPES Y P+IVLDFQSLY
Sbjct: 921 QFKVESFLIRICKSESFILLSPGKKDVRKQKALECVPLVMEPESAFYKSPLIVLDFQSLY 980
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDK 646
PS++I YNYC+ST +GRV + ++++ G ++ L L+ ++TI+P+GV +
Sbjct: 981 PSIMIGYNYCYSTMIGRVREINLTEN-NLGVSKFSLPRNILALLKNDVTIAPNGVVYAKT 1039
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMKE 673
S+R L KML +ILD R+M+K++M E
Sbjct: 1040 SVRKSTLSKMLTDILDVRVMIKKTMNE 1066
Score = 171 (65.3 bits), Expect = 7.4e-75, Sum P(2) = 7.4e-75
Identities = 47/114 (41%), Positives = 63/114 (55%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLY--TCPPEEDRKV-GIILIGQESELPEV 301
LT L +EIHA +R+ PDPA DEV I + L T P + D GI+++ + SE
Sbjct: 667 LTHLTLEIHANTRSDKIPDPAIDEVSMIIWCLEEETFPLDLDIAYEGIMIVHKASEDSTF 726
Query: 302 RTK------PIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
TK I + F +E E+F + V DPDIL G+EI FSWGY++ER
Sbjct: 727 PTKIQHCINEIPVMFYESEFEMFEALTDLVLLLDPDILSGFEIHNFSWGYIIER 780
Score = 142 (55.0 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 23/40 (57%), Positives = 33/40 (82%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDS 150
Y P+IVLDFQSLYPS++I YNYC+ST +GRV + ++++
Sbjct: 967 YKSPLIVLDFQSLYPSIMIGYNYCYSTMIGRVREINLTEN 1006
>DICTYBASE|DDB_G0271608 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0006139 "nucleobase-containing compound metabolic
process" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016035 "zeta
DNA polymerase complex" evidence=ISS;IBA] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0271608 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GenomeReviews:CM000151_GR EMBL:AAFI02000006 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR025687 Pfam:PF14260 KO:K02350
GO:GO:0016035 RefSeq:XP_645553.1 ProteinModelPortal:Q55AZ3
EnsemblProtists:DDB0232271 GeneID:8618010 KEGG:ddi:DDB_G0271608
InParanoid:Q55AZ3 OMA:TTCELEV Uniprot:Q55AZ3
Length = 2701
Score = 628 (226.1 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 149/388 (38%), Positives = 232/388 (59%)
Query: 241 ENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYL---YTCPPEEDRKV---GIILIGQ 294
+N LT+L+VEIH SR L P+P +D +++I Y + + E D+ GI+++
Sbjct: 1712 QNQNLTILSVEIHCNSRDNLNPNPEFDSIQSIIYCIRDEQSIEIEGDQYQDIKGILMVND 1771
Query: 295 ESELPEVRTKPIQ--MNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFV 352
E + + + + NE ELF +F+E +R +D DIL+G+E++ S GYL+ER
Sbjct: 1772 GHYENENNSYGLNCFIKVLHNEFELFKSFVELIRSYDIDILVGFEVQMSSIGYLIER--- 1828
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRN 412
+N+ L S+ E R L G T G N + + ++ ++
Sbjct: 1829 ANQLGL-SLCDEISRVISNTGLTGQNTTTTK-----------GANRTKRTNYFSK-DRDQ 1875
Query: 413 SSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWW 472
S + T +++ GRIV+NLWRLLRHE+ L +YT++N+ +HVL++R +S+K LT W+
Sbjct: 1876 YSFEHF--TGMKIIGRIVLNLWRLLRHEITLDNYTYQNLCFHVLNKRQEEYSFKKLTNWY 1933
Query: 473 -----------EHR-THLY--KWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF 518
+H+ H Y +W T+E+YL + LI D I RTSE +R++GI F
Sbjct: 1934 GGGGGSSNTFQQHQHQHQYQQRWRTLEYYLKKCENNFNLIYAFDLIQRTSEFSRVYGIDF 1993
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
VLSRGSQ+ VES++LRL++ NF+ +SPS ++ PES+PL+++P +RLY P++
Sbjct: 1994 NSVLSRGSQYTVESMLLRLTKPENFILLSPSREEVLSQPMPESIPLVMDPITRLYNSPVV 2053
Query: 579 VLDFQSLYPSVIIAYNYCFSTCLGRVEH 606
VLDFQSLYPS++IAYNYC+STCLG+V++
Sbjct: 2054 VLDFQSLYPSIMIAYNYCYSTCLGKVQN 2081
Score = 156 (60.0 bits), Expect = 1.5e-16, Sum P(2) = 1.5e-16
Identities = 25/35 (71%), Positives = 33/35 (94%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEH 144
LY P++VLDFQSLYPS++IAYNYC+STCLG+V++
Sbjct: 2047 LYNSPVVVLDFQSLYPSIMIAYNYCYSTCLGKVQN 2081
Score = 148 (57.2 bits), Expect = 1.2e-71, Sum P(2) = 1.2e-71
Identities = 37/96 (38%), Positives = 57/96 (59%)
Query: 602 GRVEHLGVSDSFP-----FGCIDLNVSIRSLKKLQ-QNLTISPSGVAFVDKSIRCGILPK 655
G EH+ +D+ FG L + L+ + ++L ISP+ V F DKSIR G+ PK
Sbjct: 2139 GGEEHIDDNDNSKINKKKFGASWLENKLGLLESISIEHLNISPNNVIFTDKSIRTGLFPK 2198
Query: 656 MLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
+LQE+LDTR+MVK++MK+ + + +LN+ L
Sbjct: 2199 LLQEVLDTRIMVKRAMKKIDKGDK-KMFNILNARQL 2233
Score = 50 (22.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 19/83 (22%), Positives = 35/83 (42%)
Query: 345 YLLERHFVSNEKELFSIFIENVRQW---DPDILIGYEIETLSWGYLLERGYVLGLNLNQE 401
Y + + + +F + NVRQW P L+ I+ +S Y L NQ+
Sbjct: 2505 YYITKQILPALDRIFKVLNVNVRQWFNDQPKQLLLTPIQRMSKYYYFHHH----LKRNQQ 2560
Query: 402 LS-RITEVEKRNSSRDEVKNTQL 423
L + N++ ++ +NT +
Sbjct: 2561 LKIQYENNNNNNNNNNDHQNTTI 2583
Score = 47 (21.6 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 26/114 (22%), Positives = 45/114 (39%)
Query: 255 ISRALLKPDPA----YDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNF 310
I+ L+K DP Y E + + +Y P R + ++L E R + + +
Sbjct: 2450 IASRLMKSDPRLEPRYGE-RVKYVVVYGEP--NSRLIDLVLTPMEFLERSDRLRINVIYY 2506
Query: 311 VSNE-----KELFSTFIENVRQW---DPDILIGYEIETFSWGYLLERHFVSNEK 356
++ + +F NVRQW P L+ I+ S Y H N++
Sbjct: 2507 ITKQILPALDRIFKVLNVNVRQWFNDQPKQLLLTPIQRMSKYYYFHHHLKRNQQ 2560
Score = 38 (18.4 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 23/81 (28%), Positives = 33/81 (40%)
Query: 294 QESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVS 353
Q+ + TK N NE S + N++ DI+ + FS + + S
Sbjct: 1381 QQHQQQTTTTKNKVNNNYQNETPPLSD-VSNIQ----DIVFSLNSDQFSQTTINNKKNSS 1435
Query: 354 NEKELFSIFIEN-VRQWDPDI 373
NEKE S EN + D DI
Sbjct: 1436 NEKE--STKTENNIYSNDNDI 1454
Score = 37 (18.1 bits), Expect = 6.0e-60, Sum P(2) = 6.0e-60
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 591 IAYNYCFSTCLGRVEHLGVSDS 612
+A+ Y +T GR+ + + DS
Sbjct: 2241 VAFGYTAATYSGRMPCIEIGDS 2262
Score = 37 (18.1 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 471 WWEHRTHLYKWMTVEHYLIRVTGII 495
W E++ L + +++EH I +I
Sbjct: 2161 WLENKLGLLESISIEHLNISPNNVI 2185
>POMBASE|SPAC688.10 [details] [associations]
symbol:rev3 "DNA polymerase zeta catalytic subunit Rev3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0016035 "zeta DNA
polymerase complex" evidence=ISO] [GO:0042276 "error-prone
translesion synthesis" evidence=ISO] [GO:0043504 "mitochondrial DNA
repair" evidence=IC] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0070987 "error-free translesion synthesis" evidence=ISO]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISO]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 PomBase:SPAC688.10
GO:GO:0005829 GO:GO:0005739 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0043596 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0070987 GO:GO:0043504 GO:GO:0042276 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 RefSeq:NP_594068.1 HSSP:P21189
ProteinModelPortal:Q9P6L6 STRING:Q9P6L6 EnsemblFungi:SPAC688.10.1
GeneID:2543358 KEGG:spo:SPAC688.10 HOGENOM:HOG000194392 OMA:RVPYLII
OrthoDB:EOG4FN7RT NextBio:20804373 Uniprot:Q9P6L6
Length = 1480
Score = 621 (223.7 bits), Expect = 5.6e-71, Sum P(2) = 5.6e-71
Identities = 132/329 (40%), Positives = 206/329 (62%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERG-YVLGLNLNQELSRITEVEK 410
V++E EL + I RQ DP I+ GYE+ SWGYL+ER Y +L ++LSR+ K
Sbjct: 720 VNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIERASYRFNYDLPEQLSRLKCTSK 779
Query: 411 RNSSRDE-----VKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
N ++ E + + + GR V+N+WR+LR EVNL +Y+ EN++ ++ ++ P ++
Sbjct: 780 ANFAKKENAWKYTTTSSINIVGRHVLNIWRILRGEVNLLNYSLENVVLNIFKKQTPYYNQ 839
Query: 466 K-LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ W R H K + + + L R + ++ + + E AR+ GI F V+SR
Sbjct: 840 ADKVHLWQSSRFH-EKQILLNYMLNRTRYCLEILSACAIVTKIREQARIIGIDFMSVISR 898
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 584
GSQF+VESIM R+++ N++ SPS KQ A A E+LPL++EP+S LY +P++VLDFQS
Sbjct: 899 GSQFKVESIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSDLYNNPVVVLDFQS 958
Query: 585 LYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFV 644
LYPS+IIAYN C+STCLG V+ + F N +I +L ++ ++ ISP+G A+V
Sbjct: 959 LYPSIIIAYNLCYSTCLGPVKIVNGKVKLGFMFHSSNPNIVNL--IKNDVYISPNGYAYV 1016
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+++R +L KML+E+++TR MVK+ MK+
Sbjct: 1017 KENVRKSLLAKMLEELIETRNMVKRGMKD 1045
Score = 153 (58.9 bits), Expect = 8.1e-07, P = 8.1e-07
Identities = 34/76 (44%), Positives = 45/76 (59%)
Query: 70 ESSLERSMKPDDR--PSPTRKNKSTXXXXXXXXXXXXXXXXXLYTDPIIVLDFQSLYPSV 127
ES + R KP++ PSP+ K + LY +P++VLDFQSLYPS+
Sbjct: 905 ESIMFRIAKPENYIFPSPSAKQVAEQNALEALPLVMEPKSD-LYNNPVVVLDFQSLYPSI 963
Query: 128 IIAYNYCFSTCLGRVE 143
IIAYN C+STCLG V+
Sbjct: 964 IIAYNLCYSTCLGPVK 979
Score = 140 (54.3 bits), Expect = 5.6e-71, Sum P(2) = 5.6e-71
Identities = 36/106 (33%), Positives = 55/106 (51%)
Query: 247 VLAVEIHAISRALLKPDPAYDEVKAIFY-YLYTCPPEEDRKVGIILIGQESELPEV-RTK 304
+LA+E+ S L PDP D ++ F+ Y +VG I++ + + R+
Sbjct: 653 ILALELFCCSHGGLTPDPTKDSIECCFWAYQEDVNSSMIDRVGFIVVDKSASNSSFGRSF 712
Query: 305 P-IQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
P + V++E EL + I RQ DP I+ GYE+ SWGYL+ER
Sbjct: 713 PSCTVLVVNSELELINEVIGLNRQLDPTIVCGYEVHNSSWGYLIER 758
>UNIPROTKB|Q8X1U8 [details] [associations]
symbol:UPR1 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT EMBL:AB077040 ProteinModelPortal:Q8X1U8
STRING:Q8X1U8 Uniprot:Q8X1U8
Length = 1926
Score = 673 (242.0 bits), Expect = 1.1e-64, P = 1.1e-64
Identities = 148/347 (42%), Positives = 212/347 (61%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV-LGLNLNQELSRITEVEKR 411
+ E ++ +E VR DPDI GYE+ SWGYL+ER + L+L E SR+
Sbjct: 1005 TTELDMMVRMVEIVRNHDPDIFTGYEVHGSSWGYLIERARIKYELDLCDEFSRMKSQSNG 1064
Query: 412 NSSRDEVK---NT--QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWK 466
+D + NT +++ GR +IN+WR +R E+NL YT EN+++H+LH RIP +SWK
Sbjct: 1065 RIGKDADRWGFNTTSSIRITGRHMINIWRAMRGELNLLQYTMENVVWHLLHRRIPHYSWK 1124
Query: 467 LLTCWW--EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
L+ W+ + L K + +YL R I ++E+ + I RTSE ARL G+ F+ V SR
Sbjct: 1125 TLSDWYLSDRPKDLDK--VLRYYLTRTRLDIEILEKNELIPRTSEQARLLGVDFFSVFSR 1182
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 584
GSQF+VESIM R+++ NF+ SPS KQ A E LPL++EP+S Y+ P++VLDFQS
Sbjct: 1183 GSQFKVESIMFRIAKPENFLLPSPSRKQVGAQNALECLPLVMEPQSAFYSSPLLVLDFQS 1242
Query: 585 LYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFV 644
LYPSV+IAYNYC+ST LGR+ + G +D L L+ + I+P+G+ +
Sbjct: 1243 LYPSVMIAYNYCYSTFLGRI--VSWRGRNKMGFMDYKRQEGLLSLLKDYINIAPNGMMYT 1300
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
IR +L KML EIL+TR+MVK MK+ K +++ L LN+ L
Sbjct: 1301 KPHIRKSLLAKMLTEILETRIMVKSGMKQDKDDRAIQQL--LNNRQL 1345
Score = 183 (69.5 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 44/129 (34%), Positives = 70/129 (54%)
Query: 244 YLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLY--------TCPPEEDRKVGIILIGQE 295
Y++ +++E+H +R L PDP DEV+ +F+YL T P++ + GII+ ++
Sbjct: 928 YMSAMSLEVHVNTRGKLVPDPEEDEVQCVFWYLRSEVNALRGTQTPDDTAR-GIIVFSED 986
Query: 296 SELPEVRTKPIQMNFV--SNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVS 353
S L + K + V + E ++ +E VR DPDI GYE+ SWGYL+ER +
Sbjct: 987 SLLADRIRKHTSVPVVQETTELDMMVRMVEIVRNHDPDIFTGYEVHGSSWGYLIERARIK 1046
Query: 354 NEKELFSIF 362
E +L F
Sbjct: 1047 YELDLCDEF 1055
Score = 152 (58.6 bits), Expect = 2.6e-06, Sum P(2) = 2.6e-06
Identities = 34/75 (45%), Positives = 44/75 (58%)
Query: 70 ESSLERSMKPDD--RPSPTRKNKSTXXXXXXXXXXXXXXXXXLYTDPIIVLDFQSLYPSV 127
ES + R KP++ PSP+RK Y+ P++VLDFQSLYPSV
Sbjct: 1189 ESIMFRIAKPENFLLPSPSRKQVGAQNALECLPLVMEPQSA-FYSSPLLVLDFQSLYPSV 1247
Query: 128 IIAYNYCFSTCLGRV 142
+IAYNYC+ST LGR+
Sbjct: 1248 MIAYNYCYSTFLGRI 1262
Score = 50 (22.7 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 362 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELS-RITEVEKR 411
FI +V++WD D++ G + ++L + L R + QE++ +T++ R
Sbjct: 1389 FIHSVQKWDADVVYG-DTDSL-FVSLKGRTREQAFEIGQEIADAVTKLNPR 1437
Score = 48 (22.0 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 7/15 (46%), Positives = 12/15 (80%)
Query: 321 FIENVRQWDPDILIG 335
FI +V++WD D++ G
Sbjct: 1389 FIHSVQKWDADVVYG 1403
Score = 47 (21.6 bits), Expect = 5.2e-06, Sum P(2) = 5.2e-06
Identities = 9/41 (21%), Positives = 20/41 (48%)
Query: 329 DPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQW 369
+P+ L+ T Y + ++ + + +F++ NVR W
Sbjct: 1594 EPEELLNNAHATLDADYYINKNIIPPLERIFNLVGANVRTW 1634
>UNIPROTKB|A8IZI8 [details] [associations]
symbol:POLZ1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005694
"chromosome" evidence=IBA] [GO:0016035 "zeta DNA polymerase
complex" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:DS496129 RefSeq:XP_001694423.1 STRING:A8IZI8
EnsemblPlants:EDP02418 GeneID:5720008 KEGG:cre:CHLREDRAFT_117843
ProtClustDB:CLSN2703070 BioCyc:CHLAMY:CHLREDRAFT_117843-MONOMER
Uniprot:A8IZI8
Length = 729
Score = 634 (228.2 bits), Expect = 4.8e-62, P = 4.8e-62
Identities = 139/343 (40%), Positives = 207/343 (60%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN--LNQELSRI---TEV 408
+E L F + DPD++ G++++ S GYL ER LGL L + R + V
Sbjct: 1 DEPSLLRAFAAALSSLDPDVVCGWDVQRHSLGYLAERAAALGLAPPLLRAAGRTPGTSSV 60
Query: 409 -EKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
E++N + + + GR+++NLWR+LR E+ L SYTFE+ VL R+P +
Sbjct: 61 KERQNDEWGALHASGFHVTGRVLLNLWRVLRGELKLGSYTFESCAAAVLGLRVPRVREQQ 120
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 527
L W+ +W T+ R + + EQLD +GRT+EMAR FGI F+ VLSRGSQ
Sbjct: 121 LALWFAAGPSAGRWRTLSWLCRRCRLQLAMAEQLDLVGRTAEMARTFGIDFFSVLSRGSQ 180
Query: 528 FRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYP 587
+RVES+++RL+ NN++ +PS +Q A E+LPL++EPESR+Y P++VLDFQSLYP
Sbjct: 181 YRVESLLVRLAHTNNYIMPTPSREQVGGQPAMEALPLVMEPESRMYASPVVVLDFQSLYP 240
Query: 588 SVIIAYNYCFSTCLGRVEHLGVSDS-FPFGCIDLNVSIRSL-KKLQQNLTISPSGVAFVD 645
S +IAYN C+STC+GR H + G + + ++L ISP+GVA+V
Sbjct: 241 SQVIAYNLCYSTCVGRPMHARAGGTPVRLGVTQYSYPAPAAGTATPEDLVISPNGVAYVS 300
Query: 646 KSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNS 688
+R G+LP+ML+EILDTR+M+K +MK+ + + L +LN+
Sbjct: 301 PQVRPGVLPRMLREILDTRVMIKGAMKKVPPEDKVL-LRVLNA 342
Score = 144 (55.7 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 32/95 (33%), Positives = 49/95 (51%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKD 169
+Y P++VLDFQSLYPS +IAYN C+STC+GR H + P ++ S +P
Sbjct: 225 MYASPVVVLDFQSLYPSQVIAYNLCYSTCVGRPMHARAGGT-PVRLGVTQYSYPAPAAGT 283
Query: 170 SIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLET 204
+ E + P+ P + +R+ L+T
Sbjct: 284 ATPEDLVISPNGVAYVSPQVRPGVLPRMLREILDT 318
>UNIPROTKB|Q75F27 [details] [associations]
symbol:AGOS_AAL099C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0005694 "chromosome" evidence=IBA] [GO:0016035 "zeta DNA
polymerase complex" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE016814
GenomeReviews:AE016814_GR GO:GO:0003887 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 InterPro:IPR025687
Pfam:PF14260 KO:K02350 GO:GO:0016035 HOGENOM:HOG000194392
OrthoDB:EOG4FN7RT RefSeq:NP_982443.2 STRING:Q75F27
EnsemblFungi:AAS50267 GeneID:4618518 KEGG:ago:AGOS_AAL099C
Uniprot:Q75F27
Length = 1464
Score = 643 (231.4 bits), Expect = 9.5e-62, P = 9.5e-62
Identities = 142/346 (41%), Positives = 214/346 (61%)
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVL-GLNLNQELSRITEVE 409
F ++E EL + F + V DPDIL GYE SWGY+L R + ++ +SR++ +
Sbjct: 700 FFTSEYELITEFAKLVLIIDPDILSGYETNKSSWGYILARAELSHNIDFGLLISRLSRDD 759
Query: 410 KRN--SSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
+ S + + +++ GR ++N+WR +R EVNL Y EN+ YH+LHER+P + +
Sbjct: 760 RSGLASEWNYSHSAGIKIAGRHMLNVWRKMRTEVNLAKYNIENVAYHLLHERLPKFTHET 819
Query: 468 LTCWWEHRTHLYKWMTVEHYLI-RVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
L+ +W ++ V +Y + RV IRL+ I RT E ARL GI FY VLSRGS
Sbjct: 820 LSGFWRTKSDRTSIKIVINYCLERVRCNIRLLNLKQVISRTVEQARLIGIDFYSVLSRGS 879
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
Q+RVES++ RL++ + + +SP H RA E +PLILEP+ YT P++VLDFQSLY
Sbjct: 880 QYRVESVLARLAKAEHLMLISPGKGDLRHQRALECVPLILEPDPTFYTSPVLVLDFQSLY 939
Query: 587 PSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNV-SIRSLKKLQQNLTISPSGVAFVD 645
PS+IIAYNYC++T LGR + ++ G I N+ L+ L N+TI+P+GV +V
Sbjct: 940 PSIIIAYNYCYTTILGRTREMTAGEN-KIG-ITTNILKPNILQLLGDNITIAPNGVTYVK 997
Query: 646 KSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
++IR IL KML +ILDTR+++K+++ + + S R L+ L++ L
Sbjct: 998 QNIRKSILAKMLSDILDTRVLLKRTISDMH-NGSKRLLSTLDNRQL 1042
Score = 145 (56.1 bits), Expect = 5.8e-06, P = 5.8e-06
Identities = 24/40 (60%), Positives = 32/40 (80%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDS 150
YT P++VLDFQSLYPS+IIAYNYC++T LGR + ++
Sbjct: 926 YTSPVLVLDFQSLYPSIIIAYNYCYTTILGRTREMTAGEN 965
Score = 126 (49.4 bits), Expect = 0.00065, P = 0.00065
Identities = 39/131 (29%), Positives = 67/131 (51%)
Query: 248 LAVEIHAISRALLKPDPAYDEVKAIFYYL---YTCPPEEDRKVGIILIGQESE-----LP 299
L++EIH +R + P+P DE+K I + + + E G+++ E++ +
Sbjct: 630 LSMEIHVDTRRNMLPNPRTDEIKMICWSIDGPQSVGTMELSTDGLLVSLNENDAIYKRII 689
Query: 300 EVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELF 359
E ++ F ++E EL + F + V DPDIL GYE SWGY+L R +S+ + F
Sbjct: 690 EEACGKTRVAFFTSEYELITEFAKLVLIIDPDILSGYETNKSSWGYILARAELSHNID-F 748
Query: 360 SIFIENVRQWD 370
+ I + + D
Sbjct: 749 GLLISRLSRDD 759
>WB|WBGene00021344 [details] [associations]
symbol:Y37B11A.2 species:6239 "Caenorhabditis elegans"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 539 (194.8 bits), Expect = 6.8e-51, P = 6.8e-51
Identities = 132/351 (37%), Positives = 215/351 (61%)
Query: 348 ERHFVSNEKELFSIFIENVRQW----DPDILIGYEIETLSWGYLLERGYVLGLNLNQELS 403
+R V E EL +E V +W D D++IGYE LSWG+ R +LG ++ + +
Sbjct: 404 DRRVVHMETELE--MLEEVAKWIVQYDVDVMIGYETIRLSWGFFFRRIKLLGSRISMDRA 461
Query: 404 RITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP-L 462
I E + D+ + T GR+++++W+++R ++ L++Y + + +VL ++IP L
Sbjct: 462 LIDAYED-HIEVDDQEITVAPPKGRLLVSVWKVVRSDLALRNYDLGSAVANVLRKKIPML 520
Query: 463 HSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEV 521
+ L+ R+ + V +L++++ + I L+ ++++ + +EMAR++GIQF+EV
Sbjct: 521 DNAALMRRIKGERSAIRN--DVHLHLLKLSSLNISLLTEMNWFLKNAEMARVYGIQFHEV 578
Query: 522 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 581
+RGSQ RVES++LRL+ NFVA S + QR M +PE L LILEP+S++Y DP+IVLD
Sbjct: 579 WTRGSQLRVESMLLRLAHRMNFVAPSITHLQRNMMGSPEQLQLILEPQSKVYFDPVIVLD 638
Query: 582 FQSLYPSVIIAYNYCFSTCLGRVEHL-GVSDS------FPFGCIDLNVSIRSLKKL--QQ 632
FQSLYPS++IAYNYC+ST LG++ +L ++D G I + S + KL +
Sbjct: 639 FQSLYPSMVIAYNYCYSTILGKIGNLVQMNDESRNREEIVLGAIKYHPSKDDIVKLVAYK 698
Query: 633 NLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
+ SP FV KS R G++P +L+EIL R+MVK +MK K ++ L+ +
Sbjct: 699 EVCASPLASMFVKKSKREGVMPLLLREILAARIMVKSAMKRTK-NKKLKRI 748
Score = 147 (56.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHL 145
+Y DP+IVLDFQSLYPS++IAYNYC+ST LG++ +L
Sbjct: 629 VYFDPVIVLDFQSLYPSMVIAYNYCYSTILGKIGNL 664
>UNIPROTKB|Q9BKQ3 [details] [associations]
symbol:Y37B11A.2 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0016035 "zeta DNA polymerase complex"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0005694 "chromosome" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005634 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10
InterPro:IPR023211 KO:K02350 GO:GO:0016035
GeneTree:ENSGT00550000074640 EMBL:FO080137 RefSeq:NP_498248.2
ProteinModelPortal:Q9BKQ3 SMR:Q9BKQ3 EnsemblMetazoa:Y37B11A.2
GeneID:175809 KEGG:cel:CELE_Y37B11A.2 UCSC:Y37B11A.2 CTD:175809
WormBase:Y37B11A.2 InParanoid:Q9BKQ3 OMA:QERCMSE NextBio:889762
Uniprot:Q9BKQ3
Length = 1133
Score = 539 (194.8 bits), Expect = 6.8e-51, P = 6.8e-51
Identities = 132/351 (37%), Positives = 215/351 (61%)
Query: 348 ERHFVSNEKELFSIFIENVRQW----DPDILIGYEIETLSWGYLLERGYVLGLNLNQELS 403
+R V E EL +E V +W D D++IGYE LSWG+ R +LG ++ + +
Sbjct: 404 DRRVVHMETELE--MLEEVAKWIVQYDVDVMIGYETIRLSWGFFFRRIKLLGSRISMDRA 461
Query: 404 RITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP-L 462
I E + D+ + T GR+++++W+++R ++ L++Y + + +VL ++IP L
Sbjct: 462 LIDAYED-HIEVDDQEITVAPPKGRLLVSVWKVVRSDLALRNYDLGSAVANVLRKKIPML 520
Query: 463 HSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEV 521
+ L+ R+ + V +L++++ + I L+ ++++ + +EMAR++GIQF+EV
Sbjct: 521 DNAALMRRIKGERSAIRN--DVHLHLLKLSSLNISLLTEMNWFLKNAEMARVYGIQFHEV 578
Query: 522 LSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLD 581
+RGSQ RVES++LRL+ NFVA S + QR M +PE L LILEP+S++Y DP+IVLD
Sbjct: 579 WTRGSQLRVESMLLRLAHRMNFVAPSITHLQRNMMGSPEQLQLILEPQSKVYFDPVIVLD 638
Query: 582 FQSLYPSVIIAYNYCFSTCLGRVEHL-GVSDS------FPFGCIDLNVSIRSLKKL--QQ 632
FQSLYPS++IAYNYC+ST LG++ +L ++D G I + S + KL +
Sbjct: 639 FQSLYPSMVIAYNYCYSTILGKIGNLVQMNDESRNREEIVLGAIKYHPSKDDIVKLVAYK 698
Query: 633 NLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
+ SP FV KS R G++P +L+EIL R+MVK +MK K ++ L+ +
Sbjct: 699 EVCASPLASMFVKKSKREGVMPLLLREILAARIMVKSAMKRTK-NKKLKRI 748
Score = 147 (56.8 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 25/36 (69%), Positives = 33/36 (91%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHL 145
+Y DP+IVLDFQSLYPS++IAYNYC+ST LG++ +L
Sbjct: 629 VYFDPVIVLDFQSLYPSMVIAYNYCYSTILGKIGNL 664
>UNIPROTKB|I3LER4 [details] [associations]
symbol:I3LER4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006260 "DNA replication" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR006134 InterPro:IPR012337 Pfam:PF00136
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 GeneTree:ENSGT00550000074640 EMBL:CU915528
Ensembl:ENSSSCT00000026918 Uniprot:I3LER4
Length = 127
Score = 463 (168.0 bits), Expect = 9.8e-44, P = 9.8e-44
Identities = 82/125 (65%), Positives = 111/125 (88%)
Query: 484 VEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNF 543
V+HY+ RV G ++++EQLD IG+TSEMARLFGIQF VL+RGSQ+RVES+MLR+++ N+
Sbjct: 2 VDHYISRVRGNLQMLEQLDLIGKTSEMARLFGIQFLHVLTRGSQYRVESMMLRIAKPMNY 61
Query: 544 VAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 603
+ V+PS++QR+ MRAP+ +PLI+EPESR Y++ ++VLDFQSLYPS++IAYNYCFSTCLG
Sbjct: 62 IPVTPSVQQRSQMRAPQCVPLIMEPESRFYSNSVLVLDFQSLYPSIVIAYNYCFSTCLGH 121
Query: 604 VEHLG 608
VE+LG
Sbjct: 122 VENLG 126
Score = 161 (61.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 27/36 (75%), Positives = 34/36 (94%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLG 146
Y++ ++VLDFQSLYPS++IAYNYCFSTCLG VE+LG
Sbjct: 91 YSNSVLVLDFQSLYPSIVIAYNYCFSTCLGHVENLG 126
>UNIPROTKB|Q233J3 [details] [associations]
symbol:TTHERM_00391570 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR001440 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR011990 InterPro:IPR012337
InterPro:IPR013026 InterPro:IPR017964 InterPro:IPR019734
Pfam:PF00136 Pfam:PF00515 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 PROSITE:PS50005 PROSITE:PS50293 SMART:SM00028
SMART:SM00486 GO:GO:0005634 GO:GO:0005694 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 Gene3D:1.25.40.10 InterPro:IPR006597
SMART:SM00671 SUPFAM:SSF53098 InterPro:IPR013105 Pfam:PF07719
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
InterPro:IPR025687 Pfam:PF14260 KO:K02350 GO:GO:0016035
EMBL:GG662770 RefSeq:XP_001011832.1 ProteinModelPortal:Q233J3
EnsemblProtists:EAR91587 GeneID:7847176 KEGG:tet:TTHERM_00391570
ProtClustDB:CLSZ2498360 Uniprot:Q233J3
Length = 2315
Score = 438 (159.2 bits), Expect = 9.0e-42, Sum P(2) = 9.0e-42
Identities = 123/389 (31%), Positives = 199/389 (51%)
Query: 313 NEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER--HFVSNEKELFSIFIEN----V 366
NE+EL TFI+ + ++ DI+ G++IE S Y R + ++ S +N +
Sbjct: 937 NEEELLLTFIKQIHIFNVDIITGWDIEKKSLFYFSHRCWQLGIDVMDILSRCPKNSFNIL 996
Query: 367 RQWD-PDILIGYEIETLSW-GYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVK----- 419
R + D LI + + S GY ++ N + +L + + S R +
Sbjct: 997 RAFKLADCLIEEQFQNDSAKGYS-QQSMSFDSNQSFKLQNVAMQSIKQSHRSAKQTGFFA 1055
Query: 420 NTQL--QMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS-WKLLTCWWEHRT 476
N +L ++ GR++IN WRL++H+ L Y E+++ +V ERIP+ S W L T + H
Sbjct: 1056 NFKLNFEIAGRMIINTWRLVKHDYKLFCYELESVVNYVFQERIPIFSNWSL-TQMYNHED 1114
Query: 477 HLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLR 536
+ E+ + R+ +I+ + I +E +L+G F + +G QFR+E IM R
Sbjct: 1115 IKQRVFVFEYMMKRLMKTKDIIDHIQIINTCAEETKLYGFDFQSAICKGHQFRIEHIMNR 1174
Query: 537 LSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYC 596
++ L + +S S R E PL LEP Y DP+IVLDF SLYPS++IAYN C
Sbjct: 1175 VTDLLGYKLMSASRYGVQTQRMLECSPLTLEPPKLFYVDPVIVLDFISLYPSIMIAYNLC 1234
Query: 597 FSTCLGRVEH---------LGVSDSFPFGCIDLNVSIR-SLKKLQQNLTISPSGVAFVDK 646
FSTCLG ++ LGV + +L + +L +++ ++P+ VAFV K
Sbjct: 1235 FSTCLGYIDDNFQKGGFKKLGVQKQWDVQFEELLKKHNYDIDELMKDIFVAPNKVAFVKK 1294
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMKEYK 675
S+R G+L ++ E TR +K +M +YK
Sbjct: 1295 SVREGVLSQITHEFFFTRQFIKGNMGKYK 1323
Score = 140 (54.3 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 24/33 (72%), Positives = 29/33 (87%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVE 143
Y DP+IVLDF SLYPS++IAYN CFSTCLG ++
Sbjct: 1211 YVDPVIVLDFISLYPSIMIAYNLCFSTCLGYID 1243
Score = 90 (36.7 bits), Expect = 9.0e-42, Sum P(2) = 9.0e-42
Identities = 40/130 (30%), Positives = 62/130 (47%)
Query: 232 NLNE-VTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGII 290
N N+ +T + E+ +T+ EI A S + PDP+ D + I + L R GII
Sbjct: 851 NQNKKLTQYHED--ITMYTFEIFAKSTPDMLPDPSSDPINFIVFDLENFK----RTQGII 904
Query: 291 LIGQ---ESELPEVRTKPIQMN---F-----VSNEKELFSTFIENVRQWDPDILIGYEIE 339
L+ + + +VR K N F NE+EL TFI+ + ++ DI+ G++IE
Sbjct: 905 LVDEINCHEPIDKVR-KYYGFNDSMFKTIIVTKNEEELLLTFIKQIHIFNVDIITGWDIE 963
Query: 340 TFSWGYLLER 349
S Y R
Sbjct: 964 KKSLFYFSHR 973
Score = 44 (20.5 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 13/45 (28%), Positives = 24/45 (53%)
Query: 236 VTSHVENYYLTVLAVEIHAISRALLKPDPAYD-EVKAIFYYLYTC 279
VT + E LT + +IH + ++ +D E K++FY+ + C
Sbjct: 934 VTKNEEELLLTFIK-QIHIFNVDIIT---GWDIEKKSLFYFSHRC 974
Score = 44 (20.5 bits), Expect = 6.0e-37, Sum P(2) = 6.0e-37
Identities = 11/47 (23%), Positives = 19/47 (40%)
Query: 266 YDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVS 312
+ E K F Y CP + II ++ + P+ N++S
Sbjct: 788 FQETKQRFRYQKKCPSFKQISADIIKSNKKQNKQLLNVTPVTKNWLS 834
Score = 39 (18.8 bits), Expect = 0.00091, Sum P(2) = 0.00091
Identities = 33/180 (18%), Positives = 75/180 (41%)
Query: 197 FIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAIS 256
F+ + + PK ++ ++ M D G + + N + + ++N L+ + + ++
Sbjct: 1457 FVENETDEPK---FEAKGLEVMRKD--GCQALSIIMKNCLETLLKNKNLSAIKLYLNGEW 1511
Query: 257 RALLKPDPAYDEV---KAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK---PIQMNF 310
+ LL +Y ++ K YT PP R I + + P+ + K I+
Sbjct: 1512 QKLLNDQFSYRDLIISKECKLENYTMPPPHAR----IALKEMKRDPQTKPKYGQRIKYFI 1567
Query: 311 VSN-EKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQW 369
++N + + + +V ++ + Y + + LE+ S LFS F +++ W
Sbjct: 1568 INNPQSQRLYDCVVSVNEF----MKNYRHQ-INLNEYLEKQINSALGRLFSTFDVDIQDW 1622
>GENEDB_PFALCIPARUM|PF10_0362 [details] [associations]
symbol:PF10_0362 "DNA polymerase zeta catalytic
subunit, putative" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0016035
"zeta DNA polymerase complex" evidence=ISS] InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR008973 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562
SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 266 (98.7 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 51/132 (38%), Positives = 84/132 (63%)
Query: 473 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 532
EH Y+ +T++HYL +V I+ + +++ F+ R + + +++RGSQ+ +ES
Sbjct: 998 EHIYFPYRHITIKHYLRKVYFILLIYDKICFLKRKMNFCKYIHVDLLSLINRGSQYIIES 1057
Query: 533 IMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIA 592
+L++S N+V SPS K+ R PLIL+P+S + P++V DFQSLYPS++IA
Sbjct: 1058 FLLKMSIKYNYVLYSPSNKEIFDQRPILHTPLILQPKSSINFFPLLVFDFQSLYPSILIA 1117
Query: 593 YNYCFSTCLGRV 604
+N C+STCLG +
Sbjct: 1118 FNICYSTCLGTI 1129
Score = 121 (47.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 114 PIIVLDFQSLYPSVIIAYNYCFSTCLGRV 142
P++V DFQSLYPS++IA+N C+STCLG +
Sbjct: 1101 PLLVFDFQSLYPSILIAFNICYSTCLGTI 1129
Score = 95 (38.5 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
V NE+EL I + + P ++ YE + + Y+ +R L L++ I ++ +
Sbjct: 851 VENERELIQKLINKILFYSPLSIVSYENDKYNINYINQR--CLALDIGNFYKMICKLNDQ 908
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 471
D + G I+ +L++L N + +FEN+ H L+ IP + L W
Sbjct: 909 KKFLDLHNAYSRNIKGIIIESLYKLS----NTYNTSFENLCKHYLNINIPSINKYTLYYW 964
Query: 472 WEHRT 476
+ + T
Sbjct: 965 YNYNT 969
Score = 87 (35.7 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 607 LGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLM 666
LGV + P ++ I++LK +++ I+ + +V K R GI P L++IL TR+M
Sbjct: 1304 LGVMKNVP----SISSRIKNLKS--EDIIITSNNTIYVKKHKRKGICPLFLEDILKTRIM 1357
Query: 667 VKQSMKEYK 675
+K+ M Y+
Sbjct: 1358 LKRCMGMYE 1366
Score = 60 (26.2 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 306 IQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+ + V NE+EL I + + P ++ YE + ++ Y+ +R
Sbjct: 846 VNICIVENERELIQKLINKILFYSPLSIVSYENDKYNINYINQR 889
Score = 43 (20.2 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 20/92 (21%), Positives = 40/92 (43%)
Query: 227 QMGLDNLNE-VTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDR 285
Q+ DN+ + + N + + EI D D++KA+FY + E+R
Sbjct: 642 QIKSDNMKKKINIKYGNIFFLEILTEIK--DENCYSSDYNQDKIKAVFYIV-----REER 694
Query: 286 KVGIILIGQESELPEVRTKPI-QMNFVSNEKE 316
+ + + + + TKP ++++ NE E
Sbjct: 695 LMNLYE-DYNNCMGIIATKPFPNISYLFNESE 725
Score = 39 (18.8 bits), Expect = 7.5e-22, Sum P(4) = 7.5e-22
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 602 GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 632
G E L V++ +++N S LKKL +
Sbjct: 2165 GENEELKVTNKIMNSYVEINKSQNMLKKLNK 2195
>UNIPROTKB|Q8IJ38 [details] [associations]
symbol:PF10_0362 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0016035 "zeta DNA polymerase complex"
evidence=ISS] InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR008973 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF49562 SUPFAM:SSF53098
EMBL:AE014185 GO:GO:0003887 KO:K02350 GO:GO:0016035
RefSeq:XP_001347646.1 ProteinModelPortal:Q8IJ38
EnsemblProtists:PF10_0362:mRNA GeneID:810519 KEGG:pfa:PF10_0362
EuPathDB:PlasmoDB:PF3D7_1037000 HOGENOM:HOG000284524
ProtClustDB:CLSZ2446634 Uniprot:Q8IJ38
Length = 2240
Score = 266 (98.7 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 51/132 (38%), Positives = 84/132 (63%)
Query: 473 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 532
EH Y+ +T++HYL +V I+ + +++ F+ R + + +++RGSQ+ +ES
Sbjct: 998 EHIYFPYRHITIKHYLRKVYFILLIYDKICFLKRKMNFCKYIHVDLLSLINRGSQYIIES 1057
Query: 533 IMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIA 592
+L++S N+V SPS K+ R PLIL+P+S + P++V DFQSLYPS++IA
Sbjct: 1058 FLLKMSIKYNYVLYSPSNKEIFDQRPILHTPLILQPKSSINFFPLLVFDFQSLYPSILIA 1117
Query: 593 YNYCFSTCLGRV 604
+N C+STCLG +
Sbjct: 1118 FNICYSTCLGTI 1129
Score = 121 (47.7 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 19/29 (65%), Positives = 26/29 (89%)
Query: 114 PIIVLDFQSLYPSVIIAYNYCFSTCLGRV 142
P++V DFQSLYPS++IA+N C+STCLG +
Sbjct: 1101 PLLVFDFQSLYPSILIAFNICYSTCLGTI 1129
Score = 95 (38.5 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 30/125 (24%), Positives = 56/125 (44%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
V NE+EL I + + P ++ YE + + Y+ +R L L++ I ++ +
Sbjct: 851 VENERELIQKLINKILFYSPLSIVSYENDKYNINYINQR--CLALDIGNFYKMICKLNDQ 908
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 471
D + G I+ +L++L N + +FEN+ H L+ IP + L W
Sbjct: 909 KKFLDLHNAYSRNIKGIIIESLYKLS----NTYNTSFENLCKHYLNINIPSINKYTLYYW 964
Query: 472 WEHRT 476
+ + T
Sbjct: 965 YNYNT 969
Score = 87 (35.7 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 607 LGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLM 666
LGV + P ++ I++LK +++ I+ + +V K R GI P L++IL TR+M
Sbjct: 1304 LGVMKNVP----SISSRIKNLKS--EDIIITSNNTIYVKKHKRKGICPLFLEDILKTRIM 1357
Query: 667 VKQSMKEYK 675
+K+ M Y+
Sbjct: 1358 LKRCMGMYE 1366
Score = 60 (26.2 bits), Expect = 3.6e-23, Sum P(4) = 3.6e-23
Identities = 11/44 (25%), Positives = 23/44 (52%)
Query: 306 IQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+ + V NE+EL I + + P ++ YE + ++ Y+ +R
Sbjct: 846 VNICIVENERELIQKLINKILFYSPLSIVSYENDKYNINYINQR 889
Score = 43 (20.2 bits), Expect = 9.7e-27, Sum P(4) = 9.7e-27
Identities = 20/92 (21%), Positives = 40/92 (43%)
Query: 227 QMGLDNLNE-VTSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDR 285
Q+ DN+ + + N + + EI D D++KA+FY + E+R
Sbjct: 642 QIKSDNMKKKINIKYGNIFFLEILTEIK--DENCYSSDYNQDKIKAVFYIV-----REER 694
Query: 286 KVGIILIGQESELPEVRTKPI-QMNFVSNEKE 316
+ + + + + TKP ++++ NE E
Sbjct: 695 LMNLYE-DYNNCMGIIATKPFPNISYLFNESE 725
Score = 39 (18.8 bits), Expect = 7.5e-22, Sum P(4) = 7.5e-22
Identities = 10/31 (32%), Positives = 16/31 (51%)
Query: 602 GRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 632
G E L V++ +++N S LKKL +
Sbjct: 2165 GENEELKVTNKIMNSYVEINKSQNMLKKLNK 2195
>UNIPROTKB|E2R5W5 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0045004 "DNA replication proofreading"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IEA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IEA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000731
"DNA synthesis involved in DNA repair" evidence=IEA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0003682 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0000731 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 CTD:5424 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0000109
EMBL:AAEX03000791 RefSeq:XP_851285.1 Ensembl:ENSCAFT00000004726
GeneID:610047 KEGG:cfa:610047 Uniprot:E2R5W5
Length = 1107
Score = 271 (100.5 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 84/296 (28%), Positives = 146/296 (49%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK--RN 412
E+EL + +R DPD++ GY I+ YL+ R L ++ L R++ + R+
Sbjct: 374 EEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKVHTFPFLGRVSGLRSNIRD 433
Query: 413 SSRDEVKNTQ-----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
SS + + + M GR+ +++ ++L E L+SYT + +H L E+ +
Sbjct: 434 SSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSI 493
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
+T + + V Y ++ + +RL+E+L + EMAR+ G+ +LSRG
Sbjct: 494 ITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQ 551
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
Q +V S +LR + + P +K + ++EP Y PI LDF SLY
Sbjct: 552 QVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVPIATLDFSSLY 607
Query: 587 PSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIRS--LKKLQQNL 634
PS+++A+N C++T L G + LG++ D F P G + S+R L ++ +NL
Sbjct: 608 PSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKTPTGDEFVKTSVRKGLLPQILENL 663
Score = 86 (35.3 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 31/106 (29%), Positives = 47/106 (44%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 303
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 366
Query: 304 KPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
K +Q E+EL + +R DPD++ GY I+ F YL+ R
Sbjct: 367 K-VQS--YEREEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISR 409
Score = 70 (29.7 bits), Expect = 4.8e-26, Sum P(3) = 4.8e-26
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM-KE 673
+P+G FV S+R G+LP++L+ +L R K + KE
Sbjct: 640 TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKE 677
>UNIPROTKB|J9NS34 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 GeneTree:ENSGT00560000077365
OMA:MIEQTKQ EMBL:AAEX03000791 Ensembl:ENSCAFT00000045094
Uniprot:J9NS34
Length = 1131
Score = 271 (100.5 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 84/296 (28%), Positives = 146/296 (49%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK--RN 412
E+EL + +R DPD++ GY I+ YL+ R L ++ L R++ + R+
Sbjct: 374 EEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISRAQTLKVHTFPFLGRVSGLRSNIRD 433
Query: 413 SSRDEVKNTQ-----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
SS + + + M GR+ +++ ++L E L+SYT + +H L E+ +
Sbjct: 434 SSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSI 493
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
+T + + V Y ++ + +RL+E+L + EMAR+ G+ +LSRG
Sbjct: 494 ITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQ 551
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
Q +V S +LR + + P +K + ++EP Y PI LDF SLY
Sbjct: 552 QVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVPIATLDFSSLY 607
Query: 587 PSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIRS--LKKLQQNL 634
PS+++A+N C++T L G + LG++ D F P G + S+R L ++ +NL
Sbjct: 608 PSIMMAHNLCYTTLLRPGAAQKLGLTKDQFIKTPTGDEFVKTSVRKGLLPQILENL 663
Score = 86 (35.3 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 31/106 (29%), Positives = 47/106 (44%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 303
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 366
Query: 304 KPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
K +Q E+EL + +R DPD++ GY I+ F YL+ R
Sbjct: 367 K-VQS--YEREEELLQAWSTFIRTMDPDVITGYNIQNFDLPYLISR 409
Score = 70 (29.7 bits), Expect = 5.3e-26, Sum P(3) = 5.3e-26
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM-KE 673
+P+G FV S+R G+LP++L+ +L R K + KE
Sbjct: 640 TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKE 677
>ZFIN|ZDB-GENE-060429-1 [details] [associations]
symbol:pold1 "polymerase (DNA directed), delta 1,
catalytic subunit" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;IBA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043137 "DNA replication, removal of RNA primer" evidence=IBA]
[GO:0045004 "DNA replication proofreading" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IBA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 ZFIN:ZDB-GENE-060429-1
GO:GO:0007346 GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
EMBL:AY883095 IPI:IPI00631610 RefSeq:NP_001034899.1
UniGene:Dr.49022 ProteinModelPortal:Q2KNE0 STRING:Q2KNE0
GeneID:556456 KEGG:dre:556456 InParanoid:Q2KNE0 NextBio:20881495
ArrayExpress:Q2KNE0 Uniprot:Q2KNE0
Length = 1105
Score = 297 (109.6 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 89/298 (29%), Positives = 151/298 (50%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI---TEVE 409
+ EK + + E +R DPDI+ GY I+ YLL R L +N+ L R+ V
Sbjct: 376 TQEKLMLQSWAEFMRTVDPDIITGYNIQNFDLPYLLNRAATLKVNMFPYLGRVWGCKSVL 435
Query: 410 KRNSSRDEV----KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
K +S + + +N + M GR+ +L ++L + L+SYT + +H L E+
Sbjct: 436 KDSSFQSKQMGRRENKTINMEGRVQFDLLQVLLRDYKLRSYTLNAVSFHFLQEQKEDVQH 495
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
++T + + V Y ++ + +RL+++L + EMAR+ G+ +LSR
Sbjct: 496 SIITDLQNGNEQTRRRLAV--YCLKDAYLPLRLLQKLMCVINYMEMARVTGVPLTYLLSR 553
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 584
G Q +V S +LR + + V P +K + ++EPE Y+ PI LDF S
Sbjct: 554 GQQIKVVSQLLRQAMKQDLVM--PVVKTEGGEDYTGAT--VIEPEKGYYSVPIATLDFSS 609
Query: 585 LYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIRS--LKKLQQNL 634
LYPS+++A+N C++T L ++E LG+ D F P G + + S+R L ++ +NL
Sbjct: 610 LYPSIMMAHNLCYTTLLQKSQIEKLGLGPDDFIKTPTGDLFVKSSVRKGLLPEILENL 667
Score = 81 (33.6 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 29/105 (27%), Positives = 46/105 (43%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 304
L VL+ +I R + P+P D V I + E++ + + Q
Sbjct: 314 LRVLSFDIECAGRKGVFPEPEVDPVIQIASMVQR-QGEKEPFIRTVFTLQSC----ASIV 368
Query: 305 PIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
Q+ + EK + ++ E +R DPDI+ GY I+ F YLL R
Sbjct: 369 GSQILCFTQEKLMLQSWAEFMRTVDPDIITGYNIQNFDLPYLLNR 413
Score = 42 (19.8 bits), Expect = 1.5e-25, Sum P(3) = 1.5e-25
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 233 LNEVTSHVENYYLTVLAVEI 252
L ++ S+ +N +TVLAV+I
Sbjct: 166 LKDMRSNKDNIAVTVLAVDI 185
>UNIPROTKB|F1RH32 [details] [associations]
symbol:POLD1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:FP102476 RefSeq:XP_003127412.2 Ensembl:ENSSSCT00000003572
GeneID:100525752 KEGG:ssc:100525752 Uniprot:F1RH32
Length = 1107
Score = 267 (99.0 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 83/296 (28%), Positives = 145/296 (48%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK--RN 412
E++L + +R DPD++ GY I+ YL+ R L + L R++ + R+
Sbjct: 374 EEDLLQAWSNFIRVMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGRVSGLRSNIRD 433
Query: 413 SSRDEVKNTQ-----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
SS + + + M GR+ +++ ++L E L+SYT + +H L E+ +
Sbjct: 434 SSFQSKQTGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSI 493
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
+T + + V Y ++ + +RL+E+L + EMAR+ G+ +LSRG
Sbjct: 494 ITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQ 551
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
Q +V S +LR + + P +K + ++EP Y PI LDF SLY
Sbjct: 552 QVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVPITTLDFSSLY 607
Query: 587 PSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIRS--LKKLQQNL 634
PS+++A+N C++T L G + LG++ D F P G + S+R L ++ +NL
Sbjct: 608 PSIMMAHNLCYTTLLRPGAAQKLGLTADQFIKTPTGDEFVKTSVRKGLLPQILENL 663
Score = 83 (34.3 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 303
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 366
Query: 304 KPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
K +Q E++L + +R DPD++ GY I+ F YL+ R
Sbjct: 367 K-VQS--YEREEDLLQAWSNFIRVMDPDVITGYNIQNFDLPYLISR 409
Score = 70 (29.7 bits), Expect = 2.7e-25, Sum P(3) = 2.7e-25
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM-KE 673
+P+G FV S+R G+LP++L+ +L R K + KE
Sbjct: 640 TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKE 677
>UNIPROTKB|P28340 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0000731 "DNA
synthesis involved in DNA repair" evidence=IDA;IMP] [GO:0003677
"DNA binding" evidence=IDA] [GO:0000084 "S phase of mitotic cell
cycle" evidence=IDA;TAS] [GO:0003682 "chromatin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0006287 "base-excision repair, gap-filling" evidence=IDA]
[GO:0000109 "nucleotide-excision repair complex" evidence=IDA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IC;IMP;TAS] [GO:0009411 "response to UV" evidence=TAS]
[GO:0000278 "mitotic cell cycle" evidence=TAS] [GO:0000722
"telomere maintenance via recombination" evidence=TAS] [GO:0000723
"telomere maintenance" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] Reactome:REACT_216 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 EMBL:AY129569
GO:GO:0007346 GO:GO:0009411 Reactome:REACT_115566 GO:GO:0005654
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000722 GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283
GO:GO:0043137 GO:GO:0003887 GO:GO:0032201 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
OMA:MIEQTKQ GO:GO:0043625 EMBL:M80397 EMBL:M81735 EMBL:BC008800
IPI:IPI00002894 PIR:A41618 RefSeq:NP_001243778.1 RefSeq:NP_002682.2
UniGene:Hs.279413 ProteinModelPortal:P28340 SMR:P28340
IntAct:P28340 MINT:MINT-1414678 STRING:P28340 PhosphoSite:P28340
DMDM:50403732 PaxDb:P28340 PRIDE:P28340 DNASU:5424
Ensembl:ENST00000440232 GeneID:5424 KEGG:hsa:5424 UCSC:uc002psb.4
GeneCards:GC19P050889 H-InvDB:HIX0202825 HGNC:HGNC:9175
HPA:CAB004375 MIM:174761 neXtProt:NX_P28340 PharmGKB:PA33496
PhylomeDB:P28340 BindingDB:P28340 ChEMBL:CHEMBL2735 GenomeRNAi:5424
NextBio:20985 PMAP-CutDB:P28340 Bgee:P28340 CleanEx:HS_POLD1
Genevestigator:P28340 GermOnline:ENSG00000062822 GO:GO:0000109
Uniprot:P28340
Length = 1107
Score = 263 (97.6 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 84/296 (28%), Positives = 146/296 (49%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEV--EKRN 412
E++L + +R DPD++ GY I+ YL+ R L + L R+ + R+
Sbjct: 374 EEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGRVAGLCSNIRD 433
Query: 413 SSRDEV----KNTQL-QMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
SS ++T++ M GR+ +++ ++L E L+SYT + +H L E+ +
Sbjct: 434 SSFQSKQTGRRDTKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSI 493
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
+T + + V Y ++ + +RL+E+L + EMAR+ G+ +LSRG
Sbjct: 494 ITDLQNGNDQTRRRLAV--YCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQ 551
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
Q +V S +LR + + P +K + ++EP Y PI LDF SLY
Sbjct: 552 QVKVVSQLLRQAMHEGLLM--PVVKSEGGEDYTGAT--VIEPLKGYYDVPIATLDFSSLY 607
Query: 587 PSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIRS--LKKLQQNL 634
PS+++A+N C++T L G + LG++ D F P G + S+R L ++ +NL
Sbjct: 608 PSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENL 663
Score = 81 (33.6 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 303
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 310 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 366
Query: 304 KPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
K +Q E++L + +R DPD++ GY I+ F YL+ R
Sbjct: 367 K-VQS--YEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISR 409
Score = 70 (29.7 bits), Expect = 1.2e-24, Sum P(3) = 1.2e-24
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM-KE 673
+P+G FV S+R G+LP++L+ +L R K + KE
Sbjct: 640 TPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKE 677
>UNIPROTKB|P28339 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:9913 "Bos taurus" [GO:0006260 "DNA replication"
evidence=TAS] [GO:0005634 "nucleus" evidence=IC] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=TAS] [GO:0051539 "4
iron, 4 sulfur cluster binding" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0004527 "exonuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0006260
GO:GO:0051539 GO:GO:0004527 GO:GO:0090305 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 EMBL:M80395 IPI:IPI00706072 PIR:A39299
RefSeq:NP_776852.1 UniGene:Bt.4749 ProteinModelPortal:P28339
IntAct:P28339 STRING:P28339 PRIDE:P28339 GeneID:281990
KEGG:bta:281990 CTD:5424 HOVERGEN:HBG051395 KO:K02327
BindingDB:P28339 ChEMBL:CHEMBL4057 NextBio:20805858
InterPro:IPR025687 Pfam:PF14260 Uniprot:P28339
Length = 1106
Score = 261 (96.9 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 85/299 (28%), Positives = 148/299 (49%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER-------GY-VLG--LNLNQELSR 404
E++L + +R DPD++ GY I+ YL+ R G+ +LG + L + R
Sbjct: 373 EEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGRVIGLRSNI-R 431
Query: 405 ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 464
+ + R + R + K + M GR+ +++ ++L E L+SYT + +H L E+
Sbjct: 432 ESSFQSRQTGRRDSK--VVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQ 489
Query: 465 WKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLS 523
++T + + V Y ++ + +RL+E+L + EMAR+ G+ +LS
Sbjct: 490 HSIITDLQNGNDQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLS 547
Query: 524 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQ 583
RG Q +V S +LR + + P +K + ++EP Y PI LDF
Sbjct: 548 RGQQVKVVSQLLRQAMRQGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVPIATLDFS 603
Query: 584 SLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIRS--LKKLQQNL 634
SLYPS+++A+N C++T L G + LG++ D F P G + S+R L ++ +NL
Sbjct: 604 SLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKASVRKGLLPQILENL 662
Score = 81 (33.6 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 30/106 (28%), Positives = 47/106 (44%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYY-LYTCPPEEDRKVGIILIGQESELPEVRT 303
L VL+ +I R + P+P D V I L PE ++ + L P +
Sbjct: 309 LRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTL---RPCAPILGA 365
Query: 304 KPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
K +Q E++L + +R DPD++ GY I+ F YL+ R
Sbjct: 366 K-VQS--YEREEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISR 408
Score = 70 (29.7 bits), Expect = 2.0e-24, Sum P(3) = 2.0e-24
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM-KE 673
+P+G FV S+R G+LP++L+ +L R K + KE
Sbjct: 639 TPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAKE 676
>UNIPROTKB|Q22HL1 [details] [associations]
symbol:TTHERM_00636920 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0000084 "S phase of mitotic
cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0007346
GO:GO:0000166 GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
KO:K02327 InterPro:IPR025687 Pfam:PF14260 GO:GO:0043625
ProtClustDB:PTZ00166 EMBL:GG662588 RefSeq:XP_001032353.1
EnsemblProtists:EAR84690 GeneID:7846549 KEGG:tet:TTHERM_00636920
Uniprot:Q22HL1
Length = 1124
Score = 287 (106.1 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 92/324 (28%), Positives = 165/324 (50%)
Query: 362 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN------LNQELSRITEVE--KRNS 413
F++NV DPDI +GY I + Y+LERG L +N + + + IT ++ K S
Sbjct: 375 FLQNV---DPDIFLGYNITNFDFPYILERGKQLKINNGKYGFMGRIKNTITRIKDGKYLS 431
Query: 414 SRDEVKNT-QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPLHSWKLLTCW 471
+++T ++ GRI +++ + E L SY+ ++ YH L+E + +H ++ +
Sbjct: 432 KAMGMRDTKEMNFEGRIQLDMMMHMHRETKLSSYSLNSVSYHFLNEQKEDVHHTQI-SGL 490
Query: 472 WEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV 530
+ K + V Y ++ + ++L+++L I +EMAR+ G+ + +RG Q +V
Sbjct: 491 QKGDAETRKRLAV--YCLKDAQLPLKLMQKLMCIYNYTEMARVTGVPINFLFTRGQQIKV 548
Query: 531 ESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVI 590
S + R ++L N P+ + + E +L+P+ Y PI LDF SLYPS++
Sbjct: 549 ASQLYRRTKLLNLYI--PTERSQGQGDKFEGA-FVLQPKKGFYDKPIATLDFASLYPSIM 605
Query: 591 IAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRC 650
+A+N C+ST + + NV++ S+ K + T++P G F +R
Sbjct: 606 MAHNLCYSTLISK-----------------NVAM-SMNK--DDYTLTPHGDYFAKPHVRQ 645
Query: 651 GILPKMLQEILDTRLMVKQSM-KE 673
GILP +L+++L R K + KE
Sbjct: 646 GILPDILKDLLAARKKAKNELAKE 669
Score = 77 (32.2 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 29/109 (26%), Positives = 51/109 (46%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDE-VKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRT 303
L + + +I ++++ P+ + D+ + I L +ED + + S +P
Sbjct: 300 LRIFSFDIECLAKSGGFPNASKDDPIIQIATVLKIHDQQEDIVRTVFTMDTCSNIPGCIV 359
Query: 304 KPIQMNFVSNEKEL---FSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
K + E EL + F++NV DPDI +GY I F + Y+LER
Sbjct: 360 KSFK-----TETELLLEWEKFLQNV---DPDIFLGYNITNFDFPYILER 400
>UNIPROTKB|Q8X0N7 [details] [associations]
symbol:B10H4.020 "DNA polymerase" species:5141 "Neurospora
crassa" [GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0005634 "nucleus" evidence=IBA] [GO:0006287 "base-excision
repair, gap-filling" evidence=IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IBA] [GO:0007346 "regulation of
mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0043137 "DNA replication, removal of
RNA primer" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB HSSP:Q56366
EMBL:AL670010 ProteinModelPortal:Q8X0N7 STRING:Q8X0N7
Uniprot:Q8X0N7
Length = 1104
Score = 263 (97.6 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 95/333 (28%), Positives = 161/333 (48%)
Query: 362 FIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSR--ITEVEKR-NSSRDEV 418
F+E V DPDI+IGY I + YLL+R L + SR + V K N S ++
Sbjct: 380 FLEQV---DPDIIIGYNIANFDFPYLLDRAKHLKVKDFDFWSRTRVRSVAKETNFSSKQM 436
Query: 419 KNTQLQMP---GRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP--LHSW--KLLTCW 471
N + GR+ +++ +L++ + L+SYT ++ H L E+ HS +L
Sbjct: 437 GNRDTKATNTNGRLQLDMLQLVQRDYQLRSYTLNSVCSHFLGEQKEDVHHSMITELFEGT 496
Query: 472 WEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE 531
E R L + + YL + RL+++L + +EMAR+ G+ F +L+RG Q +
Sbjct: 497 PESRRRLALYCLKDAYLPQ-----RLMDKLSCLENYTEMARVTGVPFNFLLARGQQVKFL 551
Query: 532 SIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVII 591
S + R + V P+++ + E +I EP Y PI LDF SLYPS++
Sbjct: 552 SQLFRKALEQKLVI--PNLRPESSEEQYEGATVI-EPTRGYYDVPIATLDFASLYPSIMQ 608
Query: 592 AYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCG 651
A+N C++T + + + + LKK ++ ++P+G FV R G
Sbjct: 609 AHNLCYTTLIKKRD----------------IERWDLKK-DEDYIVTPNGDMFVTTKQRKG 651
Query: 652 ILPKMLQEILDTRLMVKQSMKEYK--FSESLRN 682
+L ++L+E+L R K+ + K F +++ N
Sbjct: 652 LLAQILEELLSARKQAKRELAVEKDPFKKAVLN 684
Score = 94 (38.1 bits), Expect = 2.0e-23, Sum P(2) = 2.0e-23
Identities = 29/105 (27%), Positives = 49/105 (46%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 304
L +L+ +I R + P+P +D V I + ++ + + S P V T+
Sbjct: 306 LRILSFDIECAGRKGIFPEPQHDSVIQIANIVTKYGEKKPFVRNVFCLDTTS--PIVATQ 363
Query: 305 PIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+ + + + F+E V DPDI+IGY I F + YLL+R
Sbjct: 364 ILSFDREEDMLREWRNFLEQV---DPDIIIGYNIANFDFPYLLDR 405
>WB|WBGene00008645 [details] [associations]
symbol:F10C2.4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0035188 "hatching" evidence=IMP]
[GO:0006898 "receptor-mediated endocytosis" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 271 (100.5 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 81/261 (31%), Positives = 131/261 (50%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 413
NEK L + E VR+ DPDI+ GY I Y+L+R VL L L R + EK +
Sbjct: 343 NEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR--QKEKGSV 400
Query: 414 SRDEV---K------NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 464
RD K N + + GRI+ ++ +++ + L+SYT ++ Y L E+
Sbjct: 401 VRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVE 460
Query: 465 WKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 520
++ + R L ++ + YL +RL+++L I EMAR+ G+
Sbjct: 461 HNIIPDLQRGDEQTRRRLAQYCLKDAYLP-----LRLLDKLMSIINYIEMARVTGVPMNF 515
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580
+L++G Q ++ S+MLR + NNF P I+ + +++P Y +PI L
Sbjct: 516 LLTKGQQIKILSMMLRRCKQNNFFL--PVIEANSGDGEGYEGATVIDPIRGFYNEPIATL 573
Query: 581 DFQSLYPSVIIAYNYCFSTCL 601
DF SLYPS++IA+N C++T L
Sbjct: 574 DFASLYPSIMIAHNLCYTTLL 594
Score = 100 (40.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL 139
Y +PI LDF SLYPS++IA+N C++T L
Sbjct: 566 YNEPIATLDFASLYPSIMIAHNLCYTTLL 594
Score = 82 (33.9 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+PSG F KS R G+LP++L++IL R K MK K
Sbjct: 608 TPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEK 646
>UNIPROTKB|P90829 [details] [associations]
symbol:F10C2.4 "DNA polymerase delta catalytic subunit"
species:6239 "Caenorhabditis elegans" [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0043625 "delta DNA polymerase
complex" evidence=IBA] [GO:0043137 "DNA replication, removal of RNA
primer" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0009792 GO:GO:0035188 GO:GO:0006898
GO:GO:0007346 GO:GO:0002119 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0051539 GO:GO:0000910 SUPFAM:SSF53098
GO:GO:0000084 GO:GO:0008408 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 EMBL:Z81497 PIR:T20698
RefSeq:NP_506017.1 ProteinModelPortal:P90829 SMR:P90829
STRING:P90829 PaxDb:P90829 EnsemblMetazoa:F10C2.4 GeneID:179652
KEGG:cel:CELE_F10C2.4 UCSC:F10C2.4 CTD:179652 WormBase:F10C2.4
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 InParanoid:P90829
OMA:MIEQTKQ NextBio:906306 GO:GO:0043625 Uniprot:P90829
Length = 1081
Score = 271 (100.5 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 81/261 (31%), Positives = 131/261 (50%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 413
NEK L + E VR+ DPDI+ GY I Y+L+R VL L L R + EK +
Sbjct: 343 NEKVLLEKWAEFVREVDPDIITGYNILNFDLPYILDRAKVLSLPQVSHLGR--QKEKGSV 400
Query: 414 SRDEV---K------NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHS 464
RD K N + + GRI+ ++ +++ + L+SYT ++ Y L E+
Sbjct: 401 VRDAAISSKQMGSRVNKSIDIHGRIIFDVLQVVLRDYKLRSYTLNSVSYQFLSEQKEDVE 460
Query: 465 WKLLTCWW----EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE 520
++ + R L ++ + YL +RL+++L I EMAR+ G+
Sbjct: 461 HNIIPDLQRGDEQTRRRLAQYCLKDAYLP-----LRLLDKLMSIINYIEMARVTGVPMNF 515
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580
+L++G Q ++ S+MLR + NNF P I+ + +++P Y +PI L
Sbjct: 516 LLTKGQQIKILSMMLRRCKQNNFFL--PVIEANSGDGEGYEGATVIDPIRGFYNEPIATL 573
Query: 581 DFQSLYPSVIIAYNYCFSTCL 601
DF SLYPS++IA+N C++T L
Sbjct: 574 DFASLYPSIMIAHNLCYTTLL 594
Score = 100 (40.3 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 17/29 (58%), Positives = 23/29 (79%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL 139
Y +PI LDF SLYPS++IA+N C++T L
Sbjct: 566 YNEPIATLDFASLYPSIMIAHNLCYTTLL 594
Score = 82 (33.9 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+PSG F KS R G+LP++L++IL R K MK K
Sbjct: 608 TPSGQYFATKSKRRGLLPEILEDILAARKRAKNDMKNEK 646
>UNIPROTKB|E1BNZ6 [details] [associations]
symbol:E1BNZ6 "DNA polymerase" species:9913 "Bos taurus"
[GO:0045004 "DNA replication proofreading" evidence=IEA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IEA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IEA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IEA]
[GO:0003682 "chromatin binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000731 "DNA synthesis involved in DNA
repair" evidence=IEA] [GO:0000109 "nucleotide-excision repair
complex" evidence=IEA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0003682
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0000731
GO:GO:0003887 GO:GO:0006297 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 IPI:IPI00706072
GeneTree:ENSGT00560000077365 OMA:MIEQTKQ GO:GO:0000109
EMBL:DAAA02047499 EMBL:DAAA02047500 Ensembl:ENSBTAT00000014714
Uniprot:E1BNZ6
Length = 984
Score = 255 (94.8 bits), Expect = 7.6e-23, Sum P(3) = 7.6e-23
Identities = 83/288 (28%), Positives = 143/288 (49%)
Query: 366 VRQWDPDILIGYEIETLSWGYLLER-------GY-VLG--LNLNQELSRITEVEKRNSSR 415
+R DPD++ GY I+ YL+ R G+ +LG + L + R + + R + R
Sbjct: 384 IRIMDPDVITGYNIQNFDLPYLISRAQTLKVPGFPLLGRVIGLRSNI-RESSFQSRQTGR 442
Query: 416 DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHR 475
+ K + M GR+ +++ ++L E L+SYT + +H L E+ ++T
Sbjct: 443 RDSK--VVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQNGN 500
Query: 476 THLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIM 534
+ + V Y ++ + +RL+E+L + EMAR+ G+ +LSRG Q +V S +
Sbjct: 501 DQTRRRLAV--YCLKDAFLPLRLLERLMVLVNAMEMARVTGVPLGYLLSRGQQVKVVSQL 558
Query: 535 LRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYN 594
LR + + P +K + ++EP Y PI LDF SLYPS+++A+N
Sbjct: 559 LRQAMRQGLLM--PVVKTEGGEDYTGAT--VIEPLKGYYDVPIATLDFSSLYPSIMMAHN 614
Query: 595 YCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSIRS--LKKLQQNL 634
C++T L G + LG++ D F P G + S+R L ++ +NL
Sbjct: 615 LCYTTLLRPGAAQKLGLTEDQFIKTPTGDEFVKASVRKGLLPQILENL 662
Score = 102 (41.0 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 21/44 (47%), Positives = 30/44 (68%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF 151
Y PI LDF SLYPS+++A+N C++T L G + LG++ D F
Sbjct: 593 YDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLTEDQF 636
Score = 70 (29.7 bits), Expect = 7.6e-23, Sum P(3) = 7.6e-23
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 318 FSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+STFI R DPD++ GY I+ F YL+ R
Sbjct: 380 WSTFI---RIMDPDVITGYNIQNFDLPYLISR 408
Score = 70 (29.7 bits), Expect = 7.6e-23, Sum P(3) = 7.6e-23
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSM-KE 673
+P+G FV S+R G+LP++L+ +L R K + KE
Sbjct: 639 TPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAKE 676
>UNIPROTKB|Q9LRE6 [details] [associations]
symbol:POLD1 "DNA polymerase delta catalytic subunit"
species:39947 "Oryza sativa Japonica Group" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 EMBL:DP000010 EMBL:AP008217 GO:GO:0051539
SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408 GO:GO:0043137
GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 EMBL:AB037899
EMBL:AC128644 EMBL:AC134047 RefSeq:NP_001067405.1 UniGene:Os.3738
ProteinModelPortal:Q9LRE6 STRING:Q9LRE6 PRIDE:Q9LRE6
EnsemblPlants:LOC_Os11g08330.1 GeneID:4349968
KEGG:dosa:Os11t0186400-00 KEGG:osa:4349968 Gramene:Q9LRE6
ProtClustDB:CLSN2698457 Uniprot:Q9LRE6
Length = 1105
Score = 262 (97.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 92/321 (28%), Positives = 160/321 (49%)
Query: 293 GQESELPEVRTKP-IQM-NFVSNEKELFSTFIENV---RQWDPDILIGYEIETFSWGYLL 347
G++ PE P IQ+ N V+ + E F+ NV + P ++G ++ +F
Sbjct: 325 GRKGHFPEPTHDPVIQIANLVTLQGE-GQPFVRNVMTLKSCSP--IVGVDVMSFD----- 376
Query: 348 ERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI-- 405
E+++ + + +R+ DPDI+IGY I YL+ER VL + L RI
Sbjct: 377 ------TERDVLLAWRDFIREVDPDIIIGYNICKFDLPYLIERAEVLKIVEFPILGRIRN 430
Query: 406 TEVEKRN---SSRDEV--KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-R 459
+ V R+ SSR ++ + + GR+ +L + ++ + L SY+ ++ H L E +
Sbjct: 431 SRVRVRDTTFSSRQYGMRESKDVAVEGRVQFDLLQAMQRDYKLSSYSLNSVSAHFLGEQK 490
Query: 460 IPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGII-RLIEQLDFIGRTSEMARLFGIQF 518
+H +++ + + + V Y ++ + RL+++L +I EMAR+ G+
Sbjct: 491 EDVHH-SIISDLQNGNSETRRRLAV--YCLKDAYLPQRLLDKLMYIYNYVEMARVTGVPI 547
Query: 519 YEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPII 578
+LSRG +V S +LR ++ N V P+IK +A + +LE + Y PI
Sbjct: 548 SFLLSRGQSIKVLSQLLRKAKQKNLVI--PNIKGQASGQDTFEGATVLEARAGFYEKPIA 605
Query: 579 VLDFQSLYPSVIIAYNYCFST 599
LDF SLYPS+++AYN C+ T
Sbjct: 606 TLDFASLYPSIMMAYNLCYCT 626
Score = 93 (37.8 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFST 137
Y PI LDF SLYPS+++AYN C+ T
Sbjct: 600 YEKPIATLDFASLYPSIMMAYNLCYCT 626
Score = 88 (36.0 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 19/51 (37%), Positives = 30/51 (58%)
Query: 625 RSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
R L +++ +PSG FV ++ GILP++L+E+L R K +KE K
Sbjct: 634 RKLNLPPESVNKTPSGETFVKPDVQKGILPEILEELLAARKRAKADLKEAK 684
Score = 87 (35.7 bits), Expect = 0.00069, Sum P(2) = 0.00069
Identities = 39/130 (30%), Positives = 62/130 (47%)
Query: 227 QMGLDNL-NEVTSHV-ENYY-----LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTC 279
Q+ LD L +++ SH E + +L+ +I R P+P +D V I L T
Sbjct: 289 QLELDCLYSDLVSHAAEGEHSKMAPFRILSFDIECAGRKGHFPEPTHDPVIQIAN-LVTL 347
Query: 280 PPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIE 339
E V ++ +S P V M+F E+++ + + +R+ DPDI+IGY I
Sbjct: 348 QGEGQPFVRNVMT-LKSCSPIVGVDV--MSF-DTERDVLLAWRDFIREVDPDIIIGYNIC 403
Query: 340 TFSWGYLLER 349
F YL+ER
Sbjct: 404 KFDLPYLIER 413
>GENEDB_PFALCIPARUM|PF10_0165 [details] [associations]
symbol:PF10_0165 "DNA polymerase delta
catalytic subunit" species:5833 "Plasmodium falciparum" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0043625
"delta DNA polymerase complex" evidence=ISS] [GO:0008310
"single-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185 GO:GO:0003887
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 ProtClustDB:PTZ00166 GO:GO:0008310
RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 279 (103.3 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 84/268 (31%), Positives = 133/268 (49%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-- 410
++EK L + E + + DPD L GY I Y+L RG L L + L RI V
Sbjct: 366 NDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKFLGRIKNVASTV 425
Query: 411 RNSSRDEVK-----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
++SS + ++ + GRI +++ L++ + L+SYT + + L E+ +
Sbjct: 426 KDSSFSSKQFGTHETKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHY 485
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGII--RLIEQLDFIGRTSEMARLFGIQFYEVLS 523
++ K + Y I+ G++ RLI++L FI EMAR+ G F +L+
Sbjct: 486 SIMNDLQNESPESRK--RIATYCIK-DGVLPLRLIDKLLFIYNYVEMARVTGTPFVYLLT 542
Query: 524 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQ 583
RG Q +V S + R + N+V PS + + +LEP Y +PI LDF
Sbjct: 543 RGQQIKVTSQLYRKCKELNYVI--PSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLDFA 600
Query: 584 SLYPSVIIAYNYCFSTCLGRVEHLGVSD 611
SLYPS++IA+N C+ST + + H VSD
Sbjct: 601 SLYPSIMIAHNLCYSTLI-KSNH-EVSD 626
Score = 68 (29.0 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 639 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+ + FV K+++ GILP +++E+++ R VK +K K
Sbjct: 639 NNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKNEK 675
>UNIPROTKB|Q7KQL4 [details] [associations]
symbol:PF10_0165 "DNA polymerase" species:36329 "Plasmodium
falciparum 3D7" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=ISS] [GO:0043625 "delta DNA
polymerase complex" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098 EMBL:AE014185
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 ProtClustDB:PTZ00166
GO:GO:0008310 RefSeq:XP_001347450.1 ProteinModelPortal:Q7KQL4
EnsemblProtists:PF10_0165:mRNA GeneID:810323 KEGG:pfa:PF10_0165
EuPathDB:PlasmoDB:PF3D7_1017000 Uniprot:Q7KQL4
Length = 1094
Score = 279 (103.3 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 84/268 (31%), Positives = 133/268 (49%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-- 410
++EK L + E + + DPD L GY I Y+L RG L L + L RI V
Sbjct: 366 NDEKTLLEAWNEFIIRIDPDFLTGYNIINFDLPYILNRGTALNLKKLKFLGRIKNVASTV 425
Query: 411 RNSSRDEVK-----NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
++SS + ++ + GRI +++ L++ + L+SYT + + L E+ +
Sbjct: 426 KDSSFSSKQFGTHETKEINIFGRIQFDVYDLIKRDYKLKSYTLNYVSFEFLKEQKEDVHY 485
Query: 466 KLLTCWWEHRTHLYKWMTVEHYLIRVTGII--RLIEQLDFIGRTSEMARLFGIQFYEVLS 523
++ K + Y I+ G++ RLI++L FI EMAR+ G F +L+
Sbjct: 486 SIMNDLQNESPESRK--RIATYCIK-DGVLPLRLIDKLLFIYNYVEMARVTGTPFVYLLT 542
Query: 524 RGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQ 583
RG Q +V S + R + N+V PS + + +LEP Y +PI LDF
Sbjct: 543 RGQQIKVTSQLYRKCKELNYVI--PSTYMKVNTNEKYEGATVLEPIKGYYIEPISTLDFA 600
Query: 584 SLYPSVIIAYNYCFSTCLGRVEHLGVSD 611
SLYPS++IA+N C+ST + + H VSD
Sbjct: 601 SLYPSIMIAHNLCYSTLI-KSNH-EVSD 626
Score = 68 (29.0 bits), Expect = 1.8e-22, Sum P(2) = 1.8e-22
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 639 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
+ + FV K+++ GILP +++E+++ R VK +K K
Sbjct: 639 NNLKFVKKNVKKGILPLIVEELIEARKKVKLLIKNEK 675
>DICTYBASE|DDB_G0285381 [details] [associations]
symbol:polD1 "DNA polymerase delta subunit 1"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;ISS;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0043625 "delta DNA polymerase complex" evidence=ISS;IBA]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IBA] [GO:0005634 "nucleus" evidence=IEA;IBA]
[GO:0000084 "S phase of mitotic cell cycle" evidence=IBA]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0285381 GO:GO:0007346
GenomeReviews:CM000153_GR GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
EMBL:AAFI02000079 GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 OMA:MIEQTKQ GO:GO:0043625 RefSeq:XP_638283.1
HSSP:P26811 STRING:Q54N97 EnsemblProtists:DDB0232268 GeneID:8625091
KEGG:ddi:DDB_G0285381 ProtClustDB:PTZ00166 Uniprot:Q54N97
Length = 1104
Score = 253 (94.1 bits), Expect = 5.4e-22, Sum P(3) = 5.4e-22
Identities = 89/325 (27%), Positives = 155/325 (47%)
Query: 293 GQESELPEVRTKP-IQM-NFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERH 350
G++ PE P IQ+ N V N + FI+N+ + ++ S ++ H
Sbjct: 326 GRKGVFPEPEKDPVIQISNIVKNNGDA-EPFIKNI----------FTLKGCS--SIVGAH 372
Query: 351 FVSNEKE--LFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI-TE 407
+ +++E L + + V + DPD++IGY I YL+ R L + L RI T
Sbjct: 373 VIPHKREEDLLREWRKFVIKVDPDVIIGYNIVNFDIPYLISRARQLKIPEFALLGRIKTT 432
Query: 408 VEKRNSSRDEVKNT------QLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIP 461
+ K S+R N ++ MPGR +L + ++ + L SY+ N+ H L E+
Sbjct: 433 ISKIKSTRFSSSNLGTRESKEISMPGRTQFDLMQAIQRDHKLTSYSLNNVSAHFLKEQKE 492
Query: 462 LHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYE 520
+ +++ + + V Y I+ + +RL+++L + +EMAR+ G+
Sbjct: 493 DVHFSIISDLQNGTDDDRRRLAV--YCIKDAVLPMRLLDKLMILINYTEMARVTGVPLSY 550
Query: 521 VLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVL 580
+L RG +V S + R + + NF+ P+ K + +++EP Y PI L
Sbjct: 551 LLGRGEGIKVLSQLYRKAMVENFLI--PTYKVTGKGEKFQGA-IVIEPTPGFYDTPIATL 607
Query: 581 DFQSLYPSVIIAYNYCFSTCLGRVE 605
DF SLYPS+++A+N C+ST L E
Sbjct: 608 DFTSLYPSIMMAHNLCYSTLLSAEE 632
Score = 85 (35.0 bits), Expect = 5.4e-22, Sum P(3) = 5.4e-22
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 617 CIDLNVSIRSLKKLQQNL-TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
C +S KKL + T +P G F+ + G+LP++L+E+L R K +K K
Sbjct: 623 CYSTLLSAEEAKKLPPEIYTTTPFGDHFIKSDTKKGLLPRILEELLSARKKAKDELKNEK 682
Score = 51 (23.0 bits), Expect = 5.4e-22, Sum P(3) = 5.4e-22
Identities = 16/46 (34%), Positives = 22/46 (47%)
Query: 161 SNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPK 206
SNQS N+ I ++ K S + +NP+ FIR L PK
Sbjct: 181 SNQS--NEKDIENIVVSIDIEKKKSIMGYNPNPLSDFIRITLILPK 224
Score = 38 (18.4 bits), Expect = 1.2e-20, Sum P(3) = 1.2e-20
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 70 ESSLER--SMKPDDRPSPTR 87
++SLE S+ DD P+P R
Sbjct: 297 DTSLETIISLSDDDSPAPYR 316
>FB|FBgn0263600 [details] [associations]
symbol:DNApol-delta "DNA-polymerase-delta" species:7227
"Drosophila melanogaster" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS;NAS;IDA] [GO:0043625 "delta DNA polymerase
complex" evidence=ISS;IDA] [GO:0008296 "3'-5'-exodeoxyribonuclease
activity" evidence=IDA] [GO:0006273 "lagging strand elongation"
evidence=NAS] [GO:0006272 "leading strand elongation" evidence=NAS]
[GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=NAS] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005875
"microtubule associated complex" evidence=IDA] [GO:0006974
"response to DNA damage stimulus" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0005875 EMBL:AE014296
GO:GO:0022008 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0006260 GO:GO:0006974 GO:GO:0051539 SUPFAM:SSF53098
GO:GO:0003887 eggNOG:COG0417 GO:GO:0008296 Gene3D:3.90.1600.10
InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GeneTree:ENSGT00560000077365 GO:GO:0043625 EMBL:X88928
EMBL:AY113526 RefSeq:NP_524099.2 UniGene:Dm.2838
ProteinModelPortal:P54358 SMR:P54358 DIP:DIP-22360N IntAct:P54358
MINT:MINT-877114 STRING:P54358 PaxDb:P54358
EnsemblMetazoa:FBtr0075522 GeneID:39746 KEGG:dme:Dmel_CG5949
CTD:39746 FlyBase:FBgn0263600 InParanoid:P54358 OMA:RSFRPYF
OrthoDB:EOG4RFJ7F PhylomeDB:P54358 GenomeRNAi:39746 NextBio:815171
Bgee:P54358 GermOnline:CG5949 Uniprot:P54358
Length = 1092
Score = 302 (111.4 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
Identities = 111/394 (28%), Positives = 186/394 (47%)
Query: 293 GQESELPEVRTKP-IQM-NFV--SNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLE 348
G++ PE + P IQ+ N V E+E F + + + P +IG ++
Sbjct: 305 GRKGIFPEAKIDPVIQIANMVIRQGEREPFIRNVFTLNECAP--IIGSQVLC-------- 354
Query: 349 RHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEV 408
H E ++ + VR+ DPDIL GY I + YLL R L + + L RI +
Sbjct: 355 -H--DKETQMLDKWSAFVREVDPDILTGYNINNFDFPYLLNRAAHLKVRNFEYLGRIKNI 411
Query: 409 -----EKRNSSRD--EVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RI 460
E+ S+ +N + GR+ +L +L + L+SYT + YH L E +
Sbjct: 412 RSVIKEQMLQSKQMGRRENQYVNFEGRVPFDLLFVLLRDYKLRSYTLNAVSYHFLQEQKE 471
Query: 461 PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFY 519
+H ++T + + + Y ++ + +RL+E+L I EMAR+ G+
Sbjct: 472 DVHH-SIITDLQNGDEQTRRRLAM--YCLKDAYLPLRLLEKLMAIVNYMEMARVTGVPLE 528
Query: 520 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIV 579
+L+RG Q +V S +LR ++ F+ PS + E +I EP+ Y DPI
Sbjct: 529 SLLTRGQQIKVLSQLLRKAKTKGFIM--PSYTSQGSDEQYEGATVI-EPKRGYYADPIST 585
Query: 580 LDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQN-LTISP 638
LDF SLYPS+++A+N C++T + LG G + +R + LQ + + +P
Sbjct: 586 LDFASLYPSIMMAHNLCYTTLV-----LG-------GTRE---KLRQQENLQDDQVERTP 630
Query: 639 SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMK 672
+ FV +R G+LP++L+ +L R K +K
Sbjct: 631 ANNYFVKSEVRRGLLPEILESLLAARKRAKNDLK 664
Score = 39 (18.8 bits), Expect = 5.5e-22, Sum P(2) = 5.5e-22
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 167 NKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPK 206
NKD++ EA + K + +N D + +I+ + P+
Sbjct: 159 NKDNVQEAVLMVELVEKLNIHGYNGDKKQRYIKISVTLPR 198
>UNIPROTKB|Q7RSZ8 [details] [associations]
symbol:PY00203 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
GO:GO:0043625 EMBL:AABL01000054 RefSeq:XP_729844.1
ProteinModelPortal:Q7RSZ8 STRING:Q7RSZ8 PRIDE:Q7RSZ8 GeneID:3807142
KEGG:pyo:PY00203 EuPathDB:PlasmoDB:PY00203 Uniprot:Q7RSZ8
Length = 1097
Score = 278 (102.9 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 91/312 (29%), Positives = 153/312 (49%)
Query: 299 PEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKEL 358
PE +T PI +S+ L IEN ++ +L E + ++ + ++EK +
Sbjct: 323 PEAKTDPIIQ--ISSILYLQGDPIENCAKFIFTLL---ECASIPGSNVI---WFNDEKTM 374
Query: 359 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITE----VEKRNSS 414
+ E V + DPD L GY I Y+L RG L L + + RI V+ N S
Sbjct: 375 LEAWNEFVIRIDPDFLTGYNIINFDIPYILNRGTALNLKKLKYIGRIKNIPSLVKDANFS 434
Query: 415 RDEV---KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCW 471
+ + ++ + GRI +++ L++ + L+SYT + + L E+ + ++
Sbjct: 435 SKQFGTHETKEININGRIQFDVYDLIKRDYRLKSYTLNYVSFEFLKEQKEDVHYSIMNDL 494
Query: 472 WEHRTHLYKWMTVEHYLIRVTGII--RLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFR 529
+ K + Y I+ G++ RLI++L FI EMAR+ G F +L+RG Q +
Sbjct: 495 QNENSESRK--RIATYCIK-DGLLPLRLIDKLLFIYNYVEMARVTGTPFVYLLTRGQQIK 551
Query: 530 VESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSV 589
V S + R + N++ S IK + + + +LEP Y +PI LDF SLYPS+
Sbjct: 552 VTSQLYRKCKELNYIIPSTYIKVNNNDKFEGAT--VLEPIKGYYIEPISTLDFASLYPSI 609
Query: 590 IIAYNYCFSTCL 601
+IA+N C+ST +
Sbjct: 610 MIAHNLCYSTLI 621
Score = 61 (26.5 bits), Expect = 1.2e-21, Sum P(2) = 1.2e-21
Identities = 17/54 (31%), Positives = 29/54 (53%)
Query: 621 NVSIRSLKKLQQNLTISP--SGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMK 672
N I L K ++T P + FV +++ G+LP +++E++ R VK MK
Sbjct: 624 NDEISDLNK--NDITTVPGKNNFKFVKGNVKRGVLPLIVEELIRARKNVKAMMK 675
>RGD|621839 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=IEA;ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=IEA;ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IEA;ISO] [GO:0003677 "DNA binding"
evidence=IEA;ISO] [GO:0003682 "chromatin binding" evidence=IEA;ISO]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISO;IMP;IDA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0006260
"DNA replication" evidence=ISO] [GO:0006261 "DNA-dependent DNA
replication" evidence=IMP;IDA] [GO:0006287 "base-excision repair,
gap-filling" evidence=IEA;ISO;IBA] [GO:0006297 "nucleotide-excision
repair, DNA gap filling" evidence=IEA;ISO;IBA] [GO:0007346
"regulation of mitotic cell cycle" evidence=IBA] [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA;ISO;IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IBA] [GO:0043625 "delta DNA
polymerase complex" evidence=IC;IBA] [GO:0045004 "DNA replication
proofreading" evidence=IEA;ISO;IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 263 (97.6 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
Identities = 119/492 (24%), Positives = 222/492 (45%)
Query: 181 CSKSSQIDFNPDLFKSFIR-----KQLETPKRRICDS-YAIDAMTPDTTGDYQMGLDNLN 234
CS+ S ++ F+R +L P RR+ + + + + Y+ +D
Sbjct: 189 CSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGTPSFAPYEANVDF-- 246
Query: 235 EVTSHVENYYLTVLAVEIHA---ISRALLKPDPAYDEVKAIFYYLYTCPPEED-RKVGII 290
E+ V+ + +E+ A + RA K EV ++ + + PPE +++ +
Sbjct: 247 EIRFMVDADIVGCNWLELPAGKYVRRAEKKATLCQLEVDVLWSDVISHPPEGQWQRIAPL 306
Query: 291 LI--------GQESELPEVRTKPI----QMNFVSNEKELFSTFIENVRQWDPDILIGYEI 338
+ G++ PE P+ + E E F +R P ++G ++
Sbjct: 307 RVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAP--ILGAKV 364
Query: 339 ETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL 398
+++ ER E++L + + DPD++ GY I+ YL+ R L ++
Sbjct: 365 QSY------ER-----EEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDR 413
Query: 399 NQELSRITEVEK--RNSSRD--EV--KNTQL-QMPGRIVINLWRLLRHEVNLQSYTFENI 451
L R+T + R+SS +V +++++ M GR+ +++ ++L E L+SYT +
Sbjct: 414 FPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAV 473
Query: 452 MYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEM 510
+H L E+ ++T + + V Y ++ + +RL+E+L + EM
Sbjct: 474 SFHFLGEQKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEM 531
Query: 511 ARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPES 570
AR+ G+ +LSRG Q +V S +LR + + P +K + ++EP
Sbjct: 532 ARVTGVPLGYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLK 587
Query: 571 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSI 624
Y PI LDF SLYPS+++A+N C++T L G + LG+ D F P G + S+
Sbjct: 588 GYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKASV 647
Query: 625 RS--LKKLQQNL 634
R L ++ +NL
Sbjct: 648 RKGLLPQILENL 659
Score = 70 (29.7 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+P+G FV S+R G+LP++L+ +L R K + +
Sbjct: 636 TPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ 672
>UNIPROTKB|O54747 [details] [associations]
symbol:Pold1 "DNA polymerase delta catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 RGD:621839 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616
GO:GO:0043625 GO:GO:0000109 OrthoDB:EOG4KWJS2 EMBL:AJ222691
IPI:IPI00197951 RefSeq:NP_067694.1 UniGene:Rn.88690
ProteinModelPortal:O54747 STRING:O54747 PRIDE:O54747 GeneID:59294
KEGG:rno:59294 UCSC:RGD:621839 InParanoid:O54747 NextBio:611817
Genevestigator:O54747 GermOnline:ENSRNOG00000019681 Uniprot:O54747
Length = 1103
Score = 263 (97.6 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
Identities = 119/492 (24%), Positives = 222/492 (45%)
Query: 181 CSKSSQIDFNPDLFKSFIR-----KQLETPKRRICDS-YAIDAMTPDTTGDYQMGLDNLN 234
CS+ S ++ F+R +L P RR+ + + + + Y+ +D
Sbjct: 189 CSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGIRVPGLGTPSFAPYEANVDF-- 246
Query: 235 EVTSHVENYYLTVLAVEIHA---ISRALLKPDPAYDEVKAIFYYLYTCPPEED-RKVGII 290
E+ V+ + +E+ A + RA K EV ++ + + PPE +++ +
Sbjct: 247 EIRFMVDADIVGCNWLELPAGKYVRRAEKKATLCQLEVDVLWSDVISHPPEGQWQRIAPL 306
Query: 291 LI--------GQESELPEVRTKPI----QMNFVSNEKELFSTFIENVRQWDPDILIGYEI 338
+ G++ PE P+ + E E F +R P ++G ++
Sbjct: 307 RVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAP--ILGAKV 364
Query: 339 ETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL 398
+++ ER E++L + + DPD++ GY I+ YL+ R L ++
Sbjct: 365 QSY------ER-----EEDLLQAWATFILAMDPDVITGYNIQNFDLPYLISRAQTLKVDR 413
Query: 399 NQELSRITEVEK--RNSSRD--EV--KNTQL-QMPGRIVINLWRLLRHEVNLQSYTFENI 451
L R+T + R+SS +V +++++ M GR+ +++ ++L E L+SYT +
Sbjct: 414 FPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVVSMVGRVQMDMLQVLLREYKLRSYTLNAV 473
Query: 452 MYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEM 510
+H L E+ ++T + + V Y ++ + +RL+E+L + EM
Sbjct: 474 SFHFLGEQKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEM 531
Query: 511 ARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPES 570
AR+ G+ +LSRG Q +V S +LR + + P +K + ++EP
Sbjct: 532 ARVTGVPLGYLLSRGQQVKVVSQLLRQAMREGLLM--PVVKTEGGEDYTGAT--VIEPLK 587
Query: 571 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSI 624
Y PI LDF SLYPS+++A+N C++T L G + LG+ D F P G + S+
Sbjct: 588 GYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKASV 647
Query: 625 RS--LKKLQQNL 634
R L ++ +NL
Sbjct: 648 RKGLLPQILENL 659
Score = 70 (29.7 bits), Expect = 6.3e-21, Sum P(2) = 6.3e-21
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+P+G FV S+R G+LP++L+ +L R K + +
Sbjct: 636 TPTGDEFVKASVRKGLLPQILENLLSARKRAKAELAQ 672
>MGI|MGI:97741 [details] [associations]
symbol:Pold1 "polymerase (DNA directed), delta 1, catalytic
subunit" species:10090 "Mus musculus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;IBA] [GO:0000109
"nucleotide-excision repair complex" evidence=ISO] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IBA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004527
"exonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0006260 "DNA replication"
evidence=ISO] [GO:0006261 "DNA-dependent DNA replication"
evidence=ISO] [GO:0006287 "base-excision repair, gap-filling"
evidence=ISO;IMP] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=ISO;IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IMP] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 MGI:MGI:97741 GO:GO:0007346
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 GO:GO:0003682
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0000731 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 CTD:5424 HOVERGEN:HBG051395
KO:K02327 InterPro:IPR025687 Pfam:PF14260
GeneTree:ENSGT00560000077365 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 GO:GO:0000109 EMBL:Z21848 EMBL:AF024570 EMBL:AK167569
EMBL:AK168967 EMBL:AK169040 IPI:IPI00323143 PIR:S40243
RefSeq:NP_035261.3 UniGene:Mm.16549 ProteinModelPortal:P52431
SMR:P52431 IntAct:P52431 STRING:P52431 PhosphoSite:P52431
PaxDb:P52431 PRIDE:P52431 Ensembl:ENSMUST00000049343 GeneID:18971
KEGG:mmu:18971 InParanoid:Q3TFX6 OrthoDB:EOG4KWJS2 ChiTaRS:POLD1
NextBio:295320 PMAP-CutDB:P52431 Bgee:P52431 Genevestigator:P52431
GermOnline:ENSMUSG00000038644 Uniprot:P52431
Length = 1105
Score = 261 (96.9 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 118/492 (23%), Positives = 223/492 (45%)
Query: 181 CSKSSQIDFNPDLFKSFIR-----KQLETPKRRICDS-YAIDAMTPDTTGDYQMGLDNLN 234
CS+ S ++ F+R +L P RR+ + + + + Y+ +D
Sbjct: 191 CSRESMFGYHGHGPSPFLRITLALPRLMAPARRLLEQGVRVPGLGTPSFAPYEANVDF-- 248
Query: 235 EVTSHVENYYLTVLAVEIHA---ISRALLKPDPAYDEVKAIFYYLYTCPPEED-RKVGII 290
E+ V+ + +E+ A + RA K EV ++ + + PPE +++ +
Sbjct: 249 EIRFMVDADIVGCNWLELPAGKYVRRAEKKATLCQLEVDVLWSDVISHPPEGQWQRIAPL 308
Query: 291 LI--------GQESELPEVRTKPI----QMNFVSNEKELFSTFIENVRQWDPDILIGYEI 338
+ G++ PE P+ + E E F +R P ++G ++
Sbjct: 309 RVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAP--ILGAKV 366
Query: 339 ETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNL 398
+++ ER E++L + + + DPD++ GY I+ YL+ R L ++
Sbjct: 367 QSY------ER-----EEDLLQAWADFILAMDPDVITGYNIQNFDLPYLISRAQALKVDR 415
Query: 399 NQELSRITEVEK--RNSSRD--EV--KNTQ-LQMPGRIVINLWRLLRHEVNLQSYTFENI 451
L R+T + R+SS +V ++++ + M GR+ +++ ++L E L+SYT +
Sbjct: 416 FPFLGRVTGLRSNIRDSSFQSRQVGRRDSKVISMVGRVQMDMLQVLLREHKLRSYTLNAV 475
Query: 452 MYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEM 510
+H L E+ ++T + + V Y ++ + +RL+E+L + EM
Sbjct: 476 SFHFLGEQKEDVQHSIITDLQNGNEQTRRRLAV--YCLKDAFLPLRLLERLMVLVNNVEM 533
Query: 511 ARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPES 570
AR+ G+ +L+RG Q +V S +LR + + P +K + ++EP
Sbjct: 534 ARVTGVPLGYLLTRGQQVKVVSQLLRQAMRQGLLM--PVVKTEGSEDYTGAT--VIEPLK 589
Query: 571 RLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL--GRVEHLGVS-DSF---PFGCIDLNVSI 624
Y PI LDF SLYPS+++A+N C++T L G + LG+ D F P G + S+
Sbjct: 590 GYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGAAQKLGLKPDEFIKTPTGDEFVKSSV 649
Query: 625 RS--LKKLQQNL 634
R L ++ +NL
Sbjct: 650 RKGLLPQILENL 661
Score = 71 (30.1 bits), Expect = 8.3e-21, Sum P(2) = 8.3e-21
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+P+G FV S+R G+LP++L+ +L R K + +
Sbjct: 638 TPTGDEFVKSSVRKGLLPQILENLLSARKRAKAELAQ 674
>SGD|S000002260 [details] [associations]
symbol:POL3 "Catalytic subunit of DNA polymerase delta"
species:4932 "Saccharomyces cerevisiae" [GO:0004527 "exonuclease
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0016740
"transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=NAS]
[GO:0006273 "lagging strand elongation" evidence=TAS] [GO:0006284
"base-excision repair" evidence=TAS] [GO:0043625 "delta DNA
polymerase complex" evidence=IBA;TAS] [GO:0006301 "postreplication
repair" evidence=TAS] [GO:0006272 "leading strand elongation"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0008310 "single-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=TAS] [GO:0045005
"maintenance of fidelity involved in DNA-dependent DNA replication"
evidence=IGI] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IMP;IDA] [GO:0043137 "DNA replication,
removal of RNA primer" evidence=IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006139
"nucleobase-containing compound metabolic process" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0045004 "DNA replication
proofreading" evidence=IBA] [GO:0007346 "regulation of mitotic cell
cycle" evidence=IBA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0006287 "base-excision repair, gap-filling"
evidence=IBA] [GO:0008296 "3'-5'-exodeoxyribonuclease activity"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0006278 "RNA-dependent DNA replication"
evidence=IDA] [GO:0004518 "nuclease activity" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 SGD:S000002260 GO:GO:0007346 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:BK006938 GO:GO:0051539
GO:GO:0006298 SUPFAM:SSF53098 GO:GO:0006278 GO:GO:0000084
GO:GO:0006301 EMBL:X95644 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
GO:GO:0006272 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 GeneTree:ENSGT00560000077365
HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625 OrthoDB:EOG4B01XB
EMBL:X15477 EMBL:X61920 EMBL:Z74150 PIR:S67644 RefSeq:NP_010181.2
PDB:3IAY PDBsum:3IAY ProteinModelPortal:P15436 SMR:P15436
DIP:DIP-2524N IntAct:P15436 MINT:MINT-2781941 STRING:P15436
PaxDb:P15436 PeptideAtlas:P15436 EnsemblFungi:YDL102W GeneID:851456
KEGG:sce:YDL102W CYGD:YDL102w NextBio:968726 Genevestigator:P15436
GermOnline:YDL102W GO:GO:0008310 Uniprot:P15436
Length = 1097
Score = 250 (93.1 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 79/279 (28%), Positives = 138/279 (49%)
Query: 344 GYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLN------ 397
G ++ H + E+E+ S + + + DPD++IGY YLL R L +N
Sbjct: 370 GSMIFSH--ATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNRAKALKVNDFPYFG 427
Query: 398 ----LNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMY 453
+ QE+ K +R E KN + GR+ ++L + ++ E L+SYT +
Sbjct: 428 RLKTVKQEIKESVFSSKAYGTR-ETKNVNID--GRLQLDLLQFIQREYKLRSYTLNAVSA 484
Query: 454 HVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMAR 512
H L E+ + +++ + + + V Y ++ + +RL+E+L + +EMAR
Sbjct: 485 HFLGEQKEDVHYSIISDLQNGDSETRRRLAV--YCLKDAYLPLRLMEKLMALVNYTEMAR 542
Query: 513 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 572
+ G+ F +L+RG Q +V S + R + V P+++ +A E +I EP
Sbjct: 543 VTGVPFSYLLARGQQIKVVSQLFR--KCLEIDTVIPNMQSQASDDQYEGATVI-EPIRGY 599
Query: 573 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR--VEHLGV 609
Y PI LDF SLYPS+++A+N C++T + VE L +
Sbjct: 600 YDVPIATLDFNSLYPSIMMAHNLCYTTLCNKATVERLNL 638
Score = 79 (32.9 bits), Expect = 1.9e-20, Sum P(2) = 1.9e-20
Identities = 16/47 (34%), Positives = 28/47 (59%)
Query: 629 KLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
K+ ++ I+P+G FV R GILP +L E++ R K+ +++ K
Sbjct: 639 KIDEDYVITPNGDYFVTTKRRRGILPIILDELISARKRAKKDLRDEK 685
>POMBASE|SPBC336.04 [details] [associations]
symbol:cdc6 "DNA polymerase delta catalytic subunit Cdc6"
species:4896 "Schizosaccharomyces pombe" [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=TAS] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0008408 "3'-5' exonuclease
activity" evidence=IC] [GO:0010972 "negative regulation of G2/M
transition of mitotic cell cycle" evidence=IMP] [GO:0043137 "DNA
replication, removal of RNA primer" evidence=TAS] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0043625 "delta DNA
polymerase complex" evidence=TAS] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 PomBase:SPBC336.04 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR
GO:GO:0051539 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0000731
GO:GO:0043137 GO:GO:0010972 GO:GO:0003887 eggNOG:COG0417
Gene3D:3.90.1600.10 InterPro:IPR023211 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 EMBL:X59278 EMBL:L07734 EMBL:AB027796 PIR:S19661
PIR:T40242 PIR:T43266 RefSeq:NP_596124.1 ProteinModelPortal:P30316
IntAct:P30316 STRING:P30316 EnsemblFungi:SPBC336.04.1
GeneID:2540255 KEGG:spo:SPBC336.04 OrthoDB:EOG4B01XB
NextBio:20801385 Uniprot:P30316
Length = 1086
Score = 240 (89.5 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 73/256 (28%), Positives = 128/256 (50%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITE---VEK 410
N+ E+ S + + VR DPD+LIGY I YLL+R L ++ L RI V K
Sbjct: 357 NQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDRAKSLRIHNFPLLGRIHNFFSVAK 416
Query: 411 RNSSRDEVKNTQ----LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWK 466
+ + T+ +PGR+ +++ ++++ + L+SY+ + L E+ +
Sbjct: 417 ETTFSSKAYGTRESKTTSIPGRLQLDMLQVMQRDFKLRSYSLNAVCSQFLGEQKEDVHYS 476
Query: 467 LLTCWWEHRTHLYKWMTVEHYLIRVTGII-RLIEQLDFIGRTSEMARLFGIQFYEVLSRG 525
++T + + + Y ++ + RL+++L +EMAR+ G+ F +L+RG
Sbjct: 477 IITDLQNGTADSRRRLAI--YCLKDAYLPQRLMDKLMCFVNYTEMARVTGVPFNFLLARG 534
Query: 526 SQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSL 585
Q +V S + R + ++ V P+I+ E +I EP Y PI LDF SL
Sbjct: 535 QQIKVISQLFRKALQHDLVV--PNIRVNGTDEQYEGATVI-EPIKGYYDTPIATLDFSSL 591
Query: 586 YPSVIIAYNYCFSTCL 601
YPS++ A+N C++T L
Sbjct: 592 YPSIMQAHNLCYTTLL 607
Score = 96 (38.9 bits), Expect = 0.00062, Sum P(2) = 0.00062
Identities = 30/105 (28%), Positives = 50/105 (47%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 304
L +++ +I R + PDP+ D V I + + + S++ V T+
Sbjct: 294 LRIMSFDIECAGRKGVFPDPSIDPVIQIASIVTQYGDSTPFVRNVFCVDTCSQI--VGTQ 351
Query: 305 PIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+ N+ E+ S++ + VR DPD+LIGY I F YLL+R
Sbjct: 352 VYEFQ---NQAEMLSSWSKFVRDVDPDVLIGYNICNFDIPYLLDR 393
Score = 79 (32.9 bits), Expect = 2.3e-19, Sum P(2) = 2.3e-19
Identities = 18/56 (32%), Positives = 35/56 (62%)
Query: 620 LNVSIRSLKKLQQNL--TISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
L+ + L KL+Q++ +++P+G FV +R G+LP +L ++L+ R K +K+
Sbjct: 607 LDSNTAELLKLKQDVDYSVTPNGDYFVKPHVRKGLLPIILADLLNARKKAKADLKK 662
>ASPGD|ASPL0000065466 [details] [associations]
symbol:AN7325 species:162425 "Emericella nidulans"
[GO:0006281 "DNA repair" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0010972 "negative regulation of G2/M transition of mitotic cell
cycle" evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084
GO:GO:0008408 EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887
GO:GO:0006297 eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10
InterPro:IPR023211 GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327
InterPro:IPR025687 Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ
GO:GO:0043625 OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 244 (91.0 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 94/324 (29%), Positives = 157/324 (48%)
Query: 293 GQESELPEVRTKP-IQM-NFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERH 350
G++ PE P IQ+ N V+ E FI NV + LI + T +LE
Sbjct: 316 GRKGIFPEPNHDPVIQIANVVTRYGES-KPFIRNVFVMNTCSLI---VNT----QILE-- 365
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI----T 406
F EK L + + + +++ DPD++IGY I + YLL+R L +R+ +
Sbjct: 366 FQQEEKMLMA-WRDFIQKVDPDVIIGYNIANFDFPYLLDRAKHLKCTNFPYWTRLNGMRS 424
Query: 407 EVEKRNSSRDEVKNTQLQMP---GRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPL 462
E + N S ++ N + GR+ ++L +L++ + NL+SYT ++ Y L E + +
Sbjct: 425 EAKDTNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDHNLRSYTLNSVSYEFLGEQKEDV 484
Query: 463 HSWKLLTCWW---EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 519
H + + + R L + + YL + RL+++L + +EMAR+ G+ F
Sbjct: 485 HHTMITELYNGTPDSRRRLAVYCLKDAYLPQ-----RLMDKLMCLVNYTEMARVTGVPFN 539
Query: 520 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIV 579
+LSRG Q + S + R + V P++K + ++EP Y PI
Sbjct: 540 FLLSRGQQVKFLSQLYRKALQQQLVI--PNMKSTDEQDYEGAT--VIEPIRDYYDVPIAT 595
Query: 580 LDFQSLYPSVIIAYNYCFSTCLGR 603
LDF SLYPS+I A+N C++T L +
Sbjct: 596 LDFASLYPSIIQAHNLCYTTLLNK 619
Score = 73 (30.8 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 623 SIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
S+ +KK ++ ++P+G F +R G+L ++L+E+L R K+ + +
Sbjct: 621 SVAGMKK-DEDYIVTPNGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ 670
>UNIPROTKB|Q5AWK5 [details] [associations]
symbol:AN7325.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0007346 GO:GO:0000166 GO:GO:0003677
EMBL:BN001304 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
EMBL:AACD01000127 GO:GO:0043137 GO:GO:0003887 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 HOGENOM:HOG000036616 OMA:MIEQTKQ GO:GO:0043625
OrthoDB:EOG4B01XB RefSeq:XP_680594.1 STRING:Q5AWK5
EnsemblFungi:CADANIAT00000110 GeneID:2870046 KEGG:ani:AN7325.2
Uniprot:Q5AWK5
Length = 1044
Score = 244 (91.0 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 94/324 (29%), Positives = 157/324 (48%)
Query: 293 GQESELPEVRTKP-IQM-NFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERH 350
G++ PE P IQ+ N V+ E FI NV + LI + T +LE
Sbjct: 316 GRKGIFPEPNHDPVIQIANVVTRYGES-KPFIRNVFVMNTCSLI---VNT----QILE-- 365
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI----T 406
F EK L + + + +++ DPD++IGY I + YLL+R L +R+ +
Sbjct: 366 FQQEEKMLMA-WRDFIQKVDPDVIIGYNIANFDFPYLLDRAKHLKCTNFPYWTRLNGMRS 424
Query: 407 EVEKRNSSRDEVKNTQLQMP---GRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPL 462
E + N S ++ N + GR+ ++L +L++ + NL+SYT ++ Y L E + +
Sbjct: 425 EAKDTNFSSKQMGNRDTKATNTNGRLQLDLLQLVQRDHNLRSYTLNSVSYEFLGEQKEDV 484
Query: 463 HSWKLLTCWW---EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFY 519
H + + + R L + + YL + RL+++L + +EMAR+ G+ F
Sbjct: 485 HHTMITELYNGTPDSRRRLAVYCLKDAYLPQ-----RLMDKLMCLVNYTEMARVTGVPFN 539
Query: 520 EVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIV 579
+LSRG Q + S + R + V P++K + ++EP Y PI
Sbjct: 540 FLLSRGQQVKFLSQLYRKALQQQLVI--PNMKSTDEQDYEGAT--VIEPIRDYYDVPIAT 595
Query: 580 LDFQSLYPSVIIAYNYCFSTCLGR 603
LDF SLYPS+I A+N C++T L +
Sbjct: 596 LDFASLYPSIIQAHNLCYTTLLNK 619
Score = 73 (30.8 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 623 SIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
S+ +KK ++ ++P+G F +R G+L ++L+E+L R K+ + +
Sbjct: 621 SVAGMKK-DEDYIVTPNGDMFCTPKVRKGLLSQILEELLSARKKAKKELAQ 670
>UNIPROTKB|Q755K6 [details] [associations]
symbol:AGOS_AFL189W "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 GO:GO:0045004
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0006287
TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687 Pfam:PF14260
HOGENOM:HOG000036616 GO:GO:0043625 OrthoDB:EOG4B01XB EMBL:AE016819
GenomeReviews:AE016819_GR RefSeq:NP_985361.2 STRING:Q755K6
EnsemblFungi:AAS53185 GeneID:4621586 KEGG:ago:AGOS_AFL189W
Uniprot:Q755K6
Length = 1092
Score = 225 (84.3 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 66/254 (25%), Positives = 124/254 (48%)
Query: 370 DPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT---EVEKRNSSRDEVKNTQ---- 422
DPD++IGY YL+ R L ++ R+ +V K + T+
Sbjct: 389 DPDVIIGYNTTNFDLPYLINRAAALNVSSFPYFGRLVNSKQVIKETVFSSKAHGTRESKS 448
Query: 423 LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPLHSWKLLTCWWEHRTHLYKW 481
+ + GR+ +++++ +R E L+SYT ++ H L E + +H + + HR
Sbjct: 449 INIEGRLQLDIFQFVRREYQLRSYTLNSVSAHFLGEQKEDVHHSIIASL---HRGDSETR 505
Query: 482 MTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRL 540
+ Y ++ + +RL+E+L + +EMAR+ G+ F +++RG Q +V S + R +
Sbjct: 506 RRLAVYCLKDAYLPLRLLEKLMALVNYTEMARVTGVPFPYLITRGQQIKVISQLYR--KC 563
Query: 541 NNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTC 600
+ P++ H ++EP Y PI LDF SLYPS+++A+N C++T
Sbjct: 564 LQIDTIIPNMHGN-HSDDQYQGATVIEPIRGYYDIPIATLDFNSLYPSIMMAHNLCYTTL 622
Query: 601 LGR--VEHLGVSDS 612
+ V+ L + ++
Sbjct: 623 CNKATVQRLQLKEN 636
Score = 72 (30.4 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 19/57 (33%), Positives = 30/57 (52%)
Query: 617 CIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
C V LK+ ++ I+P+G FV R GILP +L+E++ R K +K+
Sbjct: 623 CNKATVQRLQLKE-NEDYIITPNGDYFVTSKKRRGILPIILEELIAARQRAKGELKK 678
Score = 59 (25.8 bits), Expect = 2.0e-18, Sum P(3) = 2.0e-18
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 329 DPDILIGYEIETFSWGYLLER 349
DPD++IGY F YL+ R
Sbjct: 389 DPDVIIGYNTTNFDLPYLINR 409
>UNIPROTKB|A8HPJ0 [details] [associations]
symbol:POLD1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0000084 "S phase of mitotic cell cycle"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0006287
"base-excision repair, gap-filling" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0007346 "regulation of mitotic cell cycle" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0043137
"DNA replication, removal of RNA primer" evidence=IBA] [GO:0043625
"delta DNA polymerase complex" evidence=IBA] [GO:0045004 "DNA
replication proofreading" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 EMBL:DS496108 GO:GO:0006297
eggNOG:COG0417 GO:GO:0045004 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0006287 TIGRFAMs:TIGR00592 KO:K02327 InterPro:IPR025687
Pfam:PF14260 GO:GO:0043625 ProtClustDB:CLSN2698457
RefSeq:XP_001689909.1 UniGene:Cre.7835 STRING:A8HPJ0
EnsemblPlants:EDP09647 GeneID:5715105 KEGG:cre:CHLREDRAFT_189721
BioCyc:CHLAMY:CHLREDRAFT_189721-MONOMER Uniprot:A8HPJ0
Length = 1091
Score = 221 (82.9 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 87/336 (25%), Positives = 158/336 (47%)
Query: 287 VGIILIGQESELPEVRTKP-IQM-NFVSNEKELFSTFIENVRQWDPDI-LIGYEIETFSW 343
+ I G++ PE + P IQ+ + VS ++ ++N+ ++G E+ +F+
Sbjct: 296 IDIECCGRKGCFPEAKIDPVIQIASMVSVSGKMDGPVVKNIMTLGSCASIVGAEVMSFN- 354
Query: 344 GYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLN-QEL 402
+E E+ + + + + DPDI+IGY I YL ER L + Q
Sbjct: 355 ----------DEAEMLLRWRDLLVESDPDIIIGYNILNFDLPYLYERADALKIGKKFQVW 404
Query: 403 SRI--TEVEKRN---SSR----DEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMY 453
R+ + R+ SS+ E K+ ++ GR+ +L ++ + L SY+ ++
Sbjct: 405 GRVRGSHTRMRDGQFSSKAYGTHEYKDITIE--GRVQFDLLTAIQRDHKLSSYSLNSVSA 462
Query: 454 HVLHE-RIPLHSWKLLTCWW---EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSE 509
H L E + +H + E R L + + YL + RL+++L + E
Sbjct: 463 HFLGEQKEDVHHSAIADLQAGNEETRRRLAVYCLKDAYLPQ-----RLLDKLMYTYNYIE 517
Query: 510 MARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESL----PLI 565
MAR+ G+ +L+RG +V S +LR + FV P+IK + + + + +
Sbjct: 518 MARVTGVPLSYLLTRGQSIKVFSQLLRKAAAKGFVI--PNIKVQGPVAGADGVGYEGATV 575
Query: 566 LEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL 601
L+P+ Y P+ LDF SLYPS+++A+N C++T L
Sbjct: 576 LDPKIGFYDRPVATLDFASLYPSIMMAHNLCYTTLL 611
Score = 74 (31.1 bits), Expect = 8.9e-17, Sum P(2) = 8.9e-17
Identities = 17/39 (43%), Positives = 24/39 (61%)
Query: 637 SPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
SPSG FV S + G+LP++L+E+L R K +K K
Sbjct: 627 SPSGDWFVRNSRQRGLLPEILEELLAARKRAKNDLKAEK 665
>UNIPROTKB|Q8TSB3 [details] [associations]
symbol:MA_0885 "DNA polymerase" species:188937
"Methanosarcina acetivorans C2A" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005694 "chromosome"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005694
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 EMBL:AE010299
GenomeReviews:AE010299_GR eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 OMA:RSFRPYF HSSP:Q56366
KO:K02319 RefSeq:NP_615844.1 ProteinModelPortal:Q8TSB3
GeneID:1472777 KEGG:mac:MA0885 ProtClustDB:CLSK568782
BioCyc:MACE188937:GI2O-954-MONOMER Uniprot:Q8TSB3
Length = 937
Score = 203 (76.5 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 66/260 (25%), Positives = 130/260 (50%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNS 413
+E E+ + F E + ++DPDI+ GY + Y+ ER V L E I V R+
Sbjct: 252 DETEMLNKFFEIICEYDPDIVAGYNHQDFDIPYITER--VKALVAKGET--INSVVGRDG 307
Query: 414 SRDEVKN----TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVL-HERIPLHSWKLL 468
S + T+ +M GR+V++ L+R +L+ YT + +L E++ + ++
Sbjct: 308 SPIGYRKFGLITRTEMKGRVVVDALPLVRRAFSLKQYTLRAVSKELLSREKLDVPPLEME 367
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGI-IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 527
W + K++ Y R + + + L+ +L + + +A++ G E++ G
Sbjct: 368 EHWNDSGDKFRKFVD---YARRDSELALELVLELRLLDKYIALAQVSGSLLQEIVDGGQT 424
Query: 528 FRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPL----ILEPESRLYTDPIIVLDFQ 583
VE+++LR L + V + + + R S L +LEP+ L + +++LD++
Sbjct: 425 SMVETLLLREFGLKDRVILPKPGDELSAERYDMSSDLKGGEVLEPKKGLLEN-VLILDYK 483
Query: 584 SLYPSVIIAYNYCFSTCLGR 603
SLYP++++A+N C++T + R
Sbjct: 484 SLYPTIMMAHNLCYTTVVTR 503
Score = 64 (27.6 bits), Expect = 5.7e-14, Sum P(2) = 5.7e-14
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 638 PSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMK 672
PSG FV + GI+P +L+++L+ R K+ MK
Sbjct: 514 PSGGEFVPPEVFRGIVPSILEDLLNKRGDTKKRMK 548
>UNIPROTKB|I3L6B3 [details] [associations]
symbol:I3L6B3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035556 "intracellular signal transduction"
evidence=IEA] InterPro:IPR002219 SMART:SM00109 GO:GO:0035556
GO:GO:0005622 InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 EMBL:CU929834 EMBL:FP236775
EMBL:AEMK01189291 Ensembl:ENSSSCT00000022797 OMA:CEICRAD
Uniprot:I3L6B3
Length = 141
Score = 168 (64.2 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ-LPCKRCIRMRIRR 56
LC +GFICE+CN+ E+++P++ S RC CGA FH++C + +PC RC+R +++
Sbjct: 56 LCSQKGFICEICNNGEILYPFEDISTSRCESCGAVFHSECKEKSVPCPRCVRRELQK 112
>FB|FBgn0034694 [details] [associations]
symbol:CG6613 species:7227 "Drosophila melanogaster"
[GO:0019992 "diacylglycerol binding" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] InterPro:IPR001841 InterPro:IPR002219
PROSITE:PS50081 PROSITE:PS50089 SMART:SM00184 EMBL:AE013599
GO:GO:0035556 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
InterPro:IPR025258 Pfam:PF13901 GeneTree:ENSGT00550000074570
InterPro:IPR004012 Pfam:PF02759 SMART:SM00593 PROSITE:PS50826
RefSeq:NP_611639.1 UniGene:Dm.15682 ProteinModelPortal:Q9W293
SMR:Q9W293 PRIDE:Q9W293 EnsemblMetazoa:FBtr0071758 GeneID:37520
KEGG:dme:Dmel_CG6613 UCSC:CG6613-RA FlyBase:FBgn0034694
InParanoid:Q9W293 OMA:MESLEAY OrthoDB:EOG43R22S PhylomeDB:Q9W293
GenomeRNAi:37520 NextBio:804063 ArrayExpress:Q9W293 Bgee:Q9W293
Uniprot:Q9W293
Length = 720
Score = 170 (64.9 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 30/74 (40%), Positives = 49/74 (66%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKC-HSQLPCKRCIRMRIRRDSM 59
LC +GFICE+C S V++P+ +S+ RC CGA FH +C + + PC +C R+R R D
Sbjct: 646 LCHLKGFICEICQSPRVLYPFHISTTFRCLACGAVFHAECLNEKQPCPKCERIRKRED-- 703
Query: 60 KGIVD-VKCFEESS 72
+G+ + V+C ++ +
Sbjct: 704 QGLQEAVQCLKQKN 717
>UNIPROTKB|Q23AJ0 [details] [associations]
symbol:TTHERM_00424700 "DNA polymerase" species:312017
"Tetrahymena thermophila SB210" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 EMBL:GG662724 RefSeq:XP_001013747.2
UniGene:Tth.5627 ProteinModelPortal:Q23AJ0 EnsemblProtists:EAR93502
GeneID:7845641 KEGG:tet:TTHERM_00424700 ProtClustDB:CLSZ2848284
Uniprot:Q23AJ0
Length = 1396
Score = 120 (47.3 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 20/37 (54%), Positives = 28/37 (75%)
Query: 565 ILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL 601
+ EPE LY + I++LDF SLYPS+I +N CF+TC+
Sbjct: 799 VFEPEKGLYNEYIVLLDFNSLYPSIIQEFNVCFTTCV 835
Score = 102 (41.0 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 50/221 (22%), Positives = 98/221 (44%)
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGL---NLNQELSRI-- 405
F NE L F+ + + DPDI++ +++ + + +L R G+ NL +L I
Sbjct: 556 FCLNELNLLEQFLVHFNEIDPDIVVAHDLYSTVFEIILTRIREKGIRKWNLLSKLINIGS 615
Query: 406 TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSW 465
+++ K SS + T++ M GR++++ + VN YT E + + IP
Sbjct: 616 SDIPKYGSSTFK---TKMAMKGRLLVDTLLSSQEFVNCVEYTLEALAQKLFKIEIPRIDA 672
Query: 466 KLLTCWWEHRTHLYKWMT--VEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLS 523
K ++ + YK + V+ + +R++ L + T ++ + G + L
Sbjct: 673 KA----YQQKFATYKLLNSLVDDTYQDIDYALRIMYHLQIVPLTKQLTSICGNIWMGSLQ 728
Query: 524 RGSQFRVESIML-RLSRLN-----NFVAVSPSIKQRAHMRA 558
R E ++L + ++LN NF + S K++ H A
Sbjct: 729 NQRAERNEMLLLHKFNQLNYVYPDNFKNLPESYKKK-HKNA 768
Score = 62 (26.9 bits), Expect = 6.2e-05, Sum P(3) = 6.2e-05
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 294 QESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ + + T P F NE L F+ + + DPDI++ +++ + + +L R
Sbjct: 540 KQDSITKKGTLPETTKFCLNELNLLEQFLVHFNEIDPDIVVAHDLYSTVFEIILTR 595
Score = 50 (22.7 bits), Expect = 6.4e-09, Sum P(3) = 6.4e-09
Identities = 20/73 (27%), Positives = 33/73 (45%)
Query: 166 PNKDSIHEAEITHP--DCSKSSQIDF-NPDLFKSFIRKQ--LETP----KRR---ICDSY 213
P+ D++ E +I + + K Q N + +F+ K E P K R + SY
Sbjct: 336 PSSDTVTEQQIKNEIAELLKKEQTSRKNVEFLGAFVDKNYAFELPIPRGKSRWYQVVMSY 395
Query: 214 AIDAMTPDTTGDY 226
+ ++PDT G Y
Sbjct: 396 EYEVISPDTKGQY 408
>UNIPROTKB|Q6ZWE6 [details] [associations]
symbol:PLEKHM3 "Pleckstrin homology domain-containing
family M member 3" species:9606 "Homo sapiens" [GO:0005543
"phospholipid binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR001849 InterPro:IPR002219
PROSITE:PS00479 PROSITE:PS50003 PROSITE:PS50081 SMART:SM00109
SMART:SM00233 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0035556 GO:GO:0046872 GO:GO:0005622 EMBL:AC096772
InterPro:IPR025258 Pfam:PF13901 HSSP:Q9UN19 eggNOG:NOG283042
EMBL:AC083900 EMBL:BC020812 EMBL:BC151137 EMBL:AK123204
IPI:IPI00746381 IPI:IPI00784284 IPI:IPI00886950
RefSeq:NP_001073944.1 UniGene:Hs.159188 UniGene:Hs.709906
ProteinModelPortal:Q6ZWE6 SMR:Q6ZWE6 STRING:Q6ZWE6
PhosphoSite:Q6ZWE6 DMDM:172046173 PRIDE:Q6ZWE6 DNASU:389072
Ensembl:ENST00000389247 Ensembl:ENST00000427836 GeneID:389072
KEGG:hsa:389072 UCSC:uc002vcl.2 CTD:389072 GeneCards:GC02M208687
HGNC:HGNC:34006 HPA:HPA035046 neXtProt:NX_Q6ZWE6
PharmGKB:PA162399738 HOGENOM:HOG000090264 HOVERGEN:HBG100733
InParanoid:Q6ZWE6 OMA:QGNTEHK OrthoDB:EOG4RBQJ0 ChiTaRS:PLEKHM3
GenomeRNAi:389072 NextBio:102555 ArrayExpress:Q6ZWE6 Bgee:Q6ZWE6
CleanEx:HS_PLEKHM3 Genevestigator:Q6ZWE6 Uniprot:Q6ZWE6
Length = 761
Score = 168 (64.2 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ-LPCKRCIRMRIRR 56
LC +GFICE+CN+ E+++P++ S RC CGA FH++C + +PC RC+R +++
Sbjct: 676 LCSQKGFICEICNNGEILYPFEDISTSRCESCGAVFHSECKEKSVPCPRCVRRELQK 732
>MGI|MGI:2443627 [details] [associations]
symbol:Plekhm3 "pleckstrin homology domain containing,
family M, member 3" species:10090 "Mus musculus" [GO:0003674
"molecular_function" evidence=ND] [GO:0005543 "phospholipid
binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] Pfam:PF00169
InterPro:IPR001849 InterPro:IPR002219 PROSITE:PS00479
PROSITE:PS50003 PROSITE:PS50081 SMART:SM00109 SMART:SM00233
MGI:MGI:2443627 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0035556 GO:GO:0046872 GO:GO:0005622 InterPro:IPR025258
Pfam:PF13901 GeneTree:ENSGT00550000074570 eggNOG:NOG283042
CTD:389072 HOGENOM:HOG000090264 HOVERGEN:HBG100733 OMA:QGNTEHK
OrthoDB:EOG4RBQJ0 EMBL:AK034959 EMBL:AK172220 EMBL:BC063098
IPI:IPI00222917 IPI:IPI00889322 RefSeq:NP_001034582.1
UniGene:Mm.239534 ProteinModelPortal:Q8BM47 SMR:Q8BM47
PhosphoSite:Q8BM47 PaxDb:Q8BM47 PRIDE:Q8BM47
Ensembl:ENSMUST00000097713 GeneID:241075 KEGG:mmu:241075
UCSC:uc007bha.1 UCSC:uc007bhb.1 InParanoid:Q8BM47 NextBio:384864
Bgee:Q8BM47 Genevestigator:Q8BM47 Uniprot:Q8BM47
Length = 761
Score = 168 (64.2 bits), Expect = 8.4e-09, P = 8.4e-09
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ-LPCKRCIRMRIRR 56
LC +GFICE+CN+ E+++P++ S RC CGA FH++C + +PC RC+R +++
Sbjct: 676 LCSQKGFICEICNNGEILYPFEDISTSRCESCGAVFHSECKEKSVPCPRCVRRELQK 732
>MGI|MGI:2685590 [details] [associations]
symbol:5031414D18Rik "RIKEN cDNA 5031414D18 gene"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] MGI:MGI:2685590
InterPro:IPR025258 Pfam:PF13901 EMBL:AK170426 IPI:IPI00380469
UniGene:Mm.320280 ProteinModelPortal:Q3TD16 PhosphoSite:Q3TD16
PRIDE:Q3TD16 UCSC:uc007uqk.1 eggNOG:NOG283042 HOVERGEN:HBG081255
InParanoid:Q3TD16 OrthoDB:EOG4R502C Bgee:Q3TD16
Genevestigator:Q3TD16 Uniprot:Q3TD16
Length = 648
Score = 167 (63.8 bits), Expect = 8.5e-09, P = 8.5e-09
Identities = 28/62 (45%), Positives = 37/62 (59%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRDSMK 60
LC +GFICE C S VIFP+Q ++ RC C ACFH +C C RC R+ RR ++
Sbjct: 582 LCQGKGFICEFCQSTTVIFPFQTTTCRRCAACRACFHKQCFQSSRCPRCARIIARRQHLE 641
Query: 61 GI 62
+
Sbjct: 642 SL 643
>ZFIN|ZDB-GENE-030131-2752 [details] [associations]
symbol:plekhm1 "pleckstrin homology domain
containing, family M (with RUN domain) member 1" species:7955
"Danio rerio" [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005543 "phospholipid binding" evidence=IEA]
InterPro:IPR001849 InterPro:IPR002219 PROSITE:PS50003 SMART:SM00109
SMART:SM00233 ZFIN:ZDB-GENE-030131-2752 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0035556 GO:GO:0005622
InterPro:IPR025258 Pfam:PF13901 GeneTree:ENSGT00550000074570
InterPro:IPR004012 Pfam:PF02759 SMART:SM00593 PROSITE:PS50826
EMBL:BX323464 IPI:IPI00919408 Ensembl:ENSDART00000129644
Uniprot:E7EZI0
Length = 1058
Score = 169 (64.5 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 29/60 (48%), Positives = 39/60 (65%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP-CKRCIRMR--IRRD 57
LC RGFIC++CN+ ++IFP+Q RCN C FH+ C +Q P C RCIR + + RD
Sbjct: 995 LCTQRGFICQICNAPDIIFPFQFDVTSRCNVCKTVFHSSCRAQCPVCPRCIRKQKYLERD 1054
>UNIPROTKB|E2QUW8 [details] [associations]
symbol:PLEKHM3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005543 "phospholipid binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR001849 InterPro:IPR002219
PROSITE:PS50003 SMART:SM00109 SMART:SM00233 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0035556 GO:GO:0005622
InterPro:IPR025258 Pfam:PF13901 GeneTree:ENSGT00550000074570
CTD:389072 OMA:QGNTEHK EMBL:AAEX03018073 EMBL:AAEX03018068
EMBL:AAEX03018069 EMBL:AAEX03018070 EMBL:AAEX03018071
EMBL:AAEX03018072 RefSeq:XP_536046.3 ProteinModelPortal:E2QUW8
Ensembl:ENSCAFT00000021506 GeneID:478888 KEGG:cfa:478888
NextBio:20854157 Uniprot:E2QUW8
Length = 757
Score = 167 (63.8 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 25/57 (43%), Positives = 40/57 (70%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ-LPCKRCIRMRIRR 56
LC +GFICE+CN+ E+++P++ S RC CGA FH +C + +PC RC+R +++
Sbjct: 672 LCSQKGFICEICNNGEILYPFEDISTSRCESCGAVFHAECKEKSVPCPRCVRRELQK 728
>UNIPROTKB|F1NS82 [details] [associations]
symbol:F1NS82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005769 "early endosome" evidence=IEA]
[GO:0005770 "late endosome" evidence=IEA] [GO:0005794 "Golgi
apparatus" evidence=IEA] [GO:0010507 "negative regulation of
autophagy" evidence=IEA] [GO:0045806 "negative regulation of
endocytosis" evidence=IEA] GO:GO:0005794 GO:GO:0010507
GO:GO:0005770 GO:GO:0005769 InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 InterPro:IPR004012 Pfam:PF02759
SMART:SM00593 PROSITE:PS50826 GO:GO:0045806 OMA:FELHKCR
EMBL:AADN02020635 IPI:IPI00813091 Ensembl:ENSGALT00000012220
Uniprot:F1NS82
Length = 942
Score = 168 (64.2 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 30/79 (37%), Positives = 49/79 (62%)
Query: 1 LCLARGFICELCNSE-EVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRDSM 59
LC A+GFICE C +E ++IFP++L+ C +C AC+H C C RC R++ RR+ +
Sbjct: 857 LCQAKGFICEFCQNEGDIIFPFELNKCKTCEECKACYHKSCFKSTRCPRCERLQARRELL 916
Query: 60 -KGIVD--VKCFEESSLER 75
K ++ + +E+ LE+
Sbjct: 917 AKQSMESYISDYEDDELEQ 935
>UNIPROTKB|E1BSU7 [details] [associations]
symbol:PLEKHM3 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0005543 "phospholipid binding" evidence=IEA]
[GO:0035556 "intracellular signal transduction" evidence=IEA]
Pfam:PF00169 InterPro:IPR001849 InterPro:IPR002219 PROSITE:PS50003
SMART:SM00109 SMART:SM00233 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0035556 GO:GO:0005622 InterPro:IPR025258
Pfam:PF13901 GeneTree:ENSGT00550000074570 CTD:389072 OMA:QGNTEHK
EMBL:AADN02019871 EMBL:AADN02019872 EMBL:AADN02019873
IPI:IPI00602323 RefSeq:XP_421947.2 Ensembl:ENSGALT00000013817
GeneID:424092 KEGG:gga:424092 NextBio:20826470 ArrayExpress:E1BSU7
Uniprot:E1BSU7
Length = 759
Score = 166 (63.5 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 25/57 (43%), Positives = 41/57 (71%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ-LPCKRCIRMRIRR 56
LC +GFICE+CN+ E+++P++ S RC CGA FH++C + +PC RC+R +++
Sbjct: 674 LCSQKGFICEICNNGEILYPFEDISTSRCESCGAVFHSECKVKAVPCPRCVRKELQK 730
>RGD|1307151 [details] [associations]
symbol:Plekhm3 "pleckstrin homology domain containing, family M,
member 3" species:10116 "Rattus norvegicus" [GO:0005543
"phospholipid binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] Pfam:PF00169 InterPro:IPR001841 InterPro:IPR001849
PROSITE:PS50003 SMART:SM00184 SMART:SM00233 RGD:1307151
GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0008270
InterPro:IPR025258 Pfam:PF13901 GeneTree:ENSGT00550000074570
CTD:389072 OMA:QGNTEHK OrthoDB:EOG4RBQJ0 IPI:IPI00957771
RefSeq:XP_001072167.3 RefSeq:XP_237212.5 Ensembl:ENSRNOT00000032782
GeneID:316455 KEGG:rno:316455 UCSC:RGD:1307151 ArrayExpress:D4A959
Uniprot:D4A959
Length = 761
Score = 165 (63.1 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 24/57 (42%), Positives = 41/57 (71%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ-LPCKRCIRMRIRR 56
LC +GFICE+CN+ E+++P++ S RC CG+ FH++C + +PC RC+R +++
Sbjct: 676 LCSQKGFICEICNNGEILYPFEDISTSRCESCGSVFHSECKEKSVPCPRCVRRELQK 732
>MGI|MGI:1915160 [details] [associations]
symbol:1700021K19Rik "RIKEN cDNA 1700021K19 gene"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005764 "lysosome" evidence=IEA] [GO:0005768
"endosome" evidence=IEA] [GO:0005769 "early endosome" evidence=ISO]
[GO:0005770 "late endosome" evidence=ISO] [GO:0006897 "endocytosis"
evidence=IEA] [GO:0006914 "autophagy" evidence=IEA] [GO:0010507
"negative regulation of autophagy" evidence=ISO] [GO:0045806
"negative regulation of endocytosis" evidence=ISO] MGI:MGI:1915160
GO:GO:0005794 GO:GO:0010507 GO:GO:0006914 GO:GO:0006897
GO:GO:0005764 GO:GO:0005770 GO:GO:0005769 InterPro:IPR025258
Pfam:PF13901 GeneTree:ENSGT00550000074570 InterPro:IPR004012
Pfam:PF02759 SMART:SM00593 PROSITE:PS50826 eggNOG:NOG283042
GO:GO:0045806 HOVERGEN:HBG062207 OMA:FELHKCR EMBL:AK122221
EMBL:AK030368 EMBL:AK042428 EMBL:AK170002 EMBL:AK170223
EMBL:AK170312 EMBL:AK171583 EMBL:AC139244 EMBL:BC057307
EMBL:BC060601 EMBL:BC067390 IPI:IPI00336258 IPI:IPI00624169
IPI:IPI00652530 IPI:IPI00969008 RefSeq:NP_001186967.1
RefSeq:NP_766203.1 UniGene:Mm.327319 ProteinModelPortal:Q80U62
IntAct:Q80U62 STRING:Q80U62 PhosphoSite:Q80U62 PRIDE:Q80U62
Ensembl:ENSMUST00000040986 Ensembl:ENSMUST00000089684
Ensembl:ENSMUST00000115105 GeneID:100502698 KEGG:mmu:100502698
UCSC:uc007yzk.2 UCSC:uc007yzl.2 UCSC:uc007yzm.2 InParanoid:Q80U62
OrthoDB:EOG4J3WGG NextBio:33367524 Bgee:Q80U62
CleanEx:MM_1700021K19RIK Genevestigator:Q80U62
GermOnline:ENSMUSG00000035629 Uniprot:Q80U62
Length = 956
Score = 165 (63.1 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 1 LCLARGFICELC-NSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRD 57
LC A+GFICE C N E+VIFP++L C +C AC+H C C RC R++ RR+
Sbjct: 867 LCQAKGFICEFCQNEEDVIFPFELHKCRTCEECKACYHKTCFKSGRCPRCERLQARRE 924
>UNIPROTKB|Q92622 [details] [associations]
symbol:KIAA0226 "Run domain Beclin-1 interacting and
cystein-rich containing protein" species:9606 "Homo sapiens"
[GO:0006897 "endocytosis" evidence=IEA] [GO:0006914 "autophagy"
evidence=IEA] [GO:0005764 "lysosome" evidence=IEA] [GO:0010507
"negative regulation of autophagy" evidence=IMP] [GO:0045806
"negative regulation of endocytosis" evidence=IMP] [GO:0005770
"late endosome" evidence=IDA] [GO:0005769 "early endosome"
evidence=IDA] [GO:0005794 "Golgi apparatus" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] GO:GO:0010507
GO:GO:0006914 GO:GO:0006897 GO:GO:0005764 GO:GO:0005770
GO:GO:0005769 InterPro:IPR025258 Pfam:PF13901 InterPro:IPR004012
Pfam:PF02759 SMART:SM00593 PROSITE:PS50826 eggNOG:NOG283042
GO:GO:0045806 EMBL:D86979 EMBL:AC024560 EMBL:BX437131 EMBL:BC014173
IPI:IPI00060439 IPI:IPI00853404 IPI:IPI00924876
RefSeq:NP_001139114.1 RefSeq:NP_055502.1 UniGene:Hs.478868
ProteinModelPortal:Q92622 IntAct:Q92622 STRING:Q92622
PhosphoSite:Q92622 DMDM:296439479 PRIDE:Q92622 DNASU:9711
Ensembl:ENST00000273582 Ensembl:ENST00000296343
Ensembl:ENST00000389665 GeneID:9711 KEGG:hsa:9711 UCSC:uc003fyc.2
UCSC:uc003fyd.3 UCSC:uc003fye.1 CTD:9711 GeneCards:GC03M197398
HGNC:HGNC:28991 MIM:613516 neXtProt:NX_Q92622 PharmGKB:PA134887849
HOGENOM:HOG000113142 HOVERGEN:HBG062207 InParanoid:Q92622
OMA:FELHKCR ChiTaRS:KIAA0226 GenomeRNAi:9711 NextBio:36499
ArrayExpress:Q92622 Bgee:Q92622 CleanEx:HS_KIAA0226
Genevestigator:Q92622 Uniprot:Q92622
Length = 972
Score = 165 (63.1 bits), Expect = 2.5e-08, P = 2.5e-08
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 1 LCLARGFICELC-NSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRDSM 59
LC A+GFICE C N +++IFP++L C +C AC+H C C RC R++ RR+++
Sbjct: 883 LCQAKGFICEFCQNEDDIIFPFELHKCRTCEECKACYHKACFKSGSCPRCERLQARREAL 942
>ZFIN|ZDB-GENE-070912-382 [details] [associations]
symbol:si:dkey-159b16.1 "si:dkey-159b16.1"
species:7955 "Danio rerio" [GO:0005543 "phospholipid binding"
evidence=IEA] InterPro:IPR001849 PROSITE:PS50003 SMART:SM00233
ZFIN:ZDB-GENE-070912-382 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 EMBL:BX005152 IPI:IPI00495572
RefSeq:XP_001919480.2 UniGene:Dr.95346 Ensembl:ENSDART00000046880
GeneID:571507 KEGG:dre:571507 NextBio:20890587 Uniprot:F1R282
Length = 711
Score = 163 (62.4 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQL-PCKRCIRMRIRR 56
LC +GFICELC++ +VI+P+Q ++ RC CGA FH +C + PC RC+R + +
Sbjct: 628 LCREKGFICELCHTGQVIYPFQENATKRCEGCGAVFHAECRMRAQPCPRCVRRELHK 684
>UNIPROTKB|Q9DE46 [details] [associations]
symbol:pola1 "DNA polymerase alpha catalytic subunit"
species:8355 "Xenopus laevis" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0046872
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363
GO:GO:0000084 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
CTD:5422 HOVERGEN:HBG080008 EMBL:AF202992 RefSeq:NP_001082055.1
UniGene:Xl.7596 ProteinModelPortal:Q9DE46 SMR:Q9DE46
MINT:MINT-7386218 GeneID:398200 KEGG:xla:398200
Xenbase:XB-GENE-1000552 Uniprot:Q9DE46
Length = 1458
Score = 111 (44.1 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 22/49 (44%), Positives = 32/49 (65%)
Query: 551 KQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
K ++ +A + L+LEP+ Y I++LDF SLYPS+I YN CF+T
Sbjct: 829 KNKSRKKAAYAGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEYNICFTT 877
Score = 100 (40.3 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 38/192 (19%), Positives = 83/192 (43%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITE-VEKRNS 413
E+ L F+ + + DPD+++G++I LL+R + ++ R+ V +
Sbjct: 615 ERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQRINSCKVPFWSKIGRLRRSVMPKLG 674
Query: 414 SRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLLTCWW 472
R GRI+ ++ + + +SY +++ +L ER+ + + +
Sbjct: 675 GRSGFAERNAAC-GRIICDIEISAKELIRCKSYHLSELVHQILKAERVVIPPENIRNAY- 732
Query: 473 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 532
HL +M +E+ I I++++ +L+ + ++ + G L G R E
Sbjct: 733 NDSVHLL-YM-LENTWIDAKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEY 790
Query: 533 IMLRLSRLNNFV 544
++L NNF+
Sbjct: 791 LLLHAFTENNFI 802
Score = 75 (31.5 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
V+ K + E+ L F+ + + DPD+++G++I F LL+R
Sbjct: 602 VKQKNANIEIALTERTLLGFFLAKIHKIDPDVIVGHDIYGFDLEVLLQR 650
Score = 55 (24.4 bits), Expect = 3.2e-08, Sum P(3) = 3.2e-08
Identities = 10/26 (38%), Positives = 19/26 (73%)
Query: 648 IRCGILPKMLQEILDTRLMVKQSMKE 673
+ GILP+ ++++++ R VKQ MK+
Sbjct: 902 LEMGILPREIRKLVERRRHVKQLMKQ 927
>RGD|1305422 [details] [associations]
symbol:RGD1305422 "similar to mKIAA0226 protein" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] [GO:0005769 "early
endosome" evidence=IEA;ISO] [GO:0005770 "late endosome"
evidence=IEA;ISO] [GO:0005794 "Golgi apparatus" evidence=IEA;ISO]
[GO:0008150 "biological_process" evidence=ND] [GO:0010507 "negative
regulation of autophagy" evidence=IEA;ISO] [GO:0045806 "negative
regulation of endocytosis" evidence=IEA;ISO] RGD:1305422
GO:GO:0005794 GO:GO:0010507 GO:GO:0005770 GO:GO:0005769
InterPro:IPR025258 Pfam:PF13901 GeneTree:ENSGT00550000074570
InterPro:IPR004012 Pfam:PF02759 SMART:SM00593 PROSITE:PS50826
GO:GO:0045806 OrthoDB:EOG4J3WGG IPI:IPI00559909
Ensembl:ENSRNOT00000046530 UCSC:RGD:1305422 ArrayExpress:D3ZA47
Uniprot:D3ZA47
Length = 955
Score = 163 (62.4 bits), Expect = 4.0e-08, P = 4.0e-08
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 1 LCLARGFICELC-NSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRD 57
LC A+GFICE C N ++VIFP++L C +C AC+H C C RC R++ RR+
Sbjct: 866 LCQAKGFICEFCQNEDDVIFPFELHKCRTCEECRACYHKTCFKSGSCPRCERLQARRE 923
>UNIPROTKB|K7EQ68 [details] [associations]
symbol:PLEKHM1 "Pleckstrin homology domain-containing
family M member 1" species:9606 "Homo sapiens" [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR002219
PROSITE:PS50081 SMART:SM00109 InterPro:IPR025258 Pfam:PF13901
HGNC:HGNC:29017 EMBL:AC091132 Ensembl:ENST00000591580
Uniprot:K7EQ68
Length = 113
Score = 136 (52.9 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CKRCIRMR 53
LC RGFIC++C ++IFP++ + RC +C FH C + + C RC R R
Sbjct: 50 LCTQRGFICQICQHHDIIFPFEFDTTVRCAECKTVFHQSCQAVVKKGCPRCARRR 104
>UNIPROTKB|E5GAJ0 [details] [associations]
symbol:KIAA0226 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045806 "negative regulation of endocytosis"
evidence=IEA] [GO:0010507 "negative regulation of autophagy"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005770 "late endosome" evidence=IEA] [GO:0005769 "early
endosome" evidence=IEA] GO:GO:0005794 GO:GO:0010507 GO:GO:0005770
GO:GO:0005769 InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 InterPro:IPR004012 Pfam:PF02759
SMART:SM00593 PROSITE:PS50826 GO:GO:0045806 OMA:FELHKCR
EMBL:CU468995 EMBL:FP102930 EMBL:HM849042 RefSeq:NP_001231644.1
RefSeq:XP_003483352.1 UniGene:Ssc.10627 Ensembl:ENSSSCT00000012965
GeneID:100153714 KEGG:ssc:100153714 Uniprot:E5GAJ0
Length = 971
Score = 162 (62.1 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 1 LCLARGFICELC-NSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRD 57
LC A+GFICE C N +++IFP++L C +C AC+H C C RC R++ RR+
Sbjct: 882 LCQAKGFICEFCQNEDDIIFPFELQKCRTCEECKACYHKACFKSGNCPRCERLQARRE 939
>MGI|MGI:99660 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1"
species:10090 "Mus musculus" [GO:0000084 "S phase of mitotic cell
cycle" evidence=ISO] [GO:0000166 "nucleotide binding" evidence=ISO]
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=ISO]
[GO:0003682 "chromatin binding" evidence=ISO] [GO:0003690
"double-stranded DNA binding" evidence=ISO] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISO;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005635 "nuclear envelope" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=ISO] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=ISO] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0006260 "DNA
replication" evidence=ISO;IMP;IDA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISO] [GO:0006270 "DNA replication
initiation" evidence=ISO] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISO] [GO:0006272 "leading
strand elongation" evidence=ISO] [GO:0006273 "lagging strand
elongation" evidence=ISO] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISO;IBA] [GO:0008283 "cell
proliferation" evidence=ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix" evidence=ISO]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016779
"nucleotidyltransferase activity" evidence=IEA] [GO:0017076 "purine
nucleotide binding" evidence=ISO] [GO:0019103 "pyrimidine
nucleotide binding" evidence=ISO] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IPI] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0090305 "nucleic acid phosphodiester bond
hydrolysis" evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
MGI:MGI:99660 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654
GO:GO:0005730 GO:GO:0000166 GO:GO:0046872 GO:GO:0003677
GO:GO:0008283 GO:GO:0000785 GO:GO:0003682 GO:GO:0051539
GO:GO:0006270 GO:GO:0003690 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0008408 GO:GO:0017076
GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 CTD:5422
HOVERGEN:HBG080008 GO:GO:0019103 EMBL:D13543 EMBL:D17384
IPI:IPI00114051 PIR:S45628 RefSeq:NP_032918.1 UniGene:Mm.1923
ProteinModelPortal:P33609 SMR:P33609 IntAct:P33609 STRING:P33609
PhosphoSite:P33609 PaxDb:P33609 PRIDE:P33609
Ensembl:ENSMUST00000006856 GeneID:18968 KEGG:mmu:18968
InParanoid:P33609 OrthoDB:EOG43XV2M BindingDB:P33609
ChEMBL:CHEMBL2797 NextBio:295308 Bgee:P33609 CleanEx:MM_POLA1
Genevestigator:P33609 GermOnline:ENSMUSG00000006678 Uniprot:P33609
Length = 1465
Score = 99 (39.9 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 847 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 882
Score = 99 (39.9 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 41/207 (19%), Positives = 87/207 (42%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-R 411
+ E+ L F+ V + DPDIL+G+ I + LL+R + ++ R+ +
Sbjct: 617 ATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQRINECKVPYWSKIGRLRRSNMPK 676
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLLTC 470
SR GR++ ++ + ++ +SY ++ +L ERI + + +
Sbjct: 677 LGSRSGFGERNATC-GRMICDVEISAKELIHCKSYHLSELVQQILKTERIVIPTENIRNM 735
Query: 471 WWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV 530
+ E LY +EH I++++ +L+ + ++ + G L G R
Sbjct: 736 YSESSYLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSERN 792
Query: 531 ESIMLRLSRLNNFVAVSPSIKQRAHMR 557
E ++L NN++ I ++ +
Sbjct: 793 EFLLLHAFYENNYIVPDKQIFRKPQQK 819
Score = 80 (33.2 bits), Expect = 5.7e-06, Sum P(3) = 5.7e-06
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+ K +++ + E+ L F+ V + DPDIL+G+ I +F LL+R
Sbjct: 606 ISKKNMKVEIAATERTLIGFFLAKVHKIDPDILVGHNICSFELEVLLQR 654
Score = 65 (27.9 bits), Expect = 7.3e-08, Sum P(3) = 7.3e-08
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
D ++ GILP+ ++++++ R VKQ MK+ + L
Sbjct: 907 DPNLEMGILPREIRKLVERRKQVKQLMKQQDLNPDL 942
>UNIPROTKB|E1BK05 [details] [associations]
symbol:KIAA0226 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045806 "negative regulation of endocytosis"
evidence=IEA] [GO:0010507 "negative regulation of autophagy"
evidence=IEA] [GO:0005794 "Golgi apparatus" evidence=IEA]
[GO:0005770 "late endosome" evidence=IEA] [GO:0005769 "early
endosome" evidence=IEA] GO:GO:0005794 GO:GO:0010507 GO:GO:0005770
GO:GO:0005769 InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 InterPro:IPR004012 Pfam:PF02759
SMART:SM00593 PROSITE:PS50826 GO:GO:0045806 CTD:9711 OMA:FELHKCR
EMBL:DAAA02001680 IPI:IPI00924219 RefSeq:NP_001095367.2
UniGene:Bt.60973 Ensembl:ENSBTAT00000061001 GeneID:508354
KEGG:bta:508354 NextBio:20868476 Uniprot:E1BK05
Length = 971
Score = 160 (61.4 bits), Expect = 8.6e-08, P = 8.6e-08
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 1 LCLARGFICELC-NSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRD 57
LC A+GFICE C N +++IFP++L C +C AC+H C C RC R++ RR+
Sbjct: 882 LCQAKGFICEFCQNEDDIIFPFELHKCRICEECKACYHKTCFKSGSCPRCERLQARRE 939
>RGD|621816 [details] [associations]
symbol:Pola1 "polymerase (DNA directed), alpha 1, catalytic
subunit" species:10116 "Rattus norvegicus" [GO:0000084 "S phase of
mitotic cell cycle" evidence=ISO;ISS] [GO:0000166 "nucleotide
binding" evidence=IEA;ISO;ISS] [GO:0000731 "DNA synthesis involved
in DNA repair" evidence=ISO;ISS] [GO:0000785 "chromatin"
evidence=ISO;ISS] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA;ISO;ISS] [GO:0003682
"chromatin binding" evidence=ISO;ISS] [GO:0003690 "double-stranded
DNA binding" evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;ISO;ISS;IDA;IMP] [GO:0003896 "DNA primase
activity" evidence=ISO;ISS] [GO:0005634 "nucleus" evidence=ISO;ISS]
[GO:0005635 "nuclear envelope" evidence=ISO;ISS] [GO:0005654
"nucleoplasm" evidence=ISO;ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IC;ISO;ISS;IDA] [GO:0005730
"nucleolus" evidence=ISO;ISS] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA;ISO;ISS;IMP] [GO:0006269
"DNA replication, synthesis of RNA primer" evidence=ISO;ISS]
[GO:0006270 "DNA replication initiation" evidence=ISO;ISS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=ISO;ISS] [GO:0006272 "leading strand elongation"
evidence=ISO;ISS] [GO:0006273 "lagging strand elongation"
evidence=ISO;ISS] [GO:0006281 "DNA repair" evidence=ISO;ISS]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=ISO;ISS;IBA] [GO:0008283 "cell
proliferation" evidence=ISO;ISS] [GO:0008408 "3'-5' exonuclease
activity" evidence=IBA] [GO:0016363 "nuclear matrix"
evidence=ISO;ISS] [GO:0017076 "purine nucleotide binding"
evidence=IMP] [GO:0019103 "pyrimidine nucleotide binding"
evidence=IMP] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0046982 "protein heterodimerization activity" evidence=ISO]
[GO:0051539 "4 iron, 4 sulfur cluster binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 RGD:621816
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 102 (41.0 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 42/213 (19%), Positives = 89/213 (41%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
+E + E+ L F+ V + DPDIL+G+ I LL+R + ++ R+
Sbjct: 614 MEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPFWSKIGRLR 673
Query: 407 EVEK-RNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHS 464
+ SR GR++ ++ ++ ++ +SY ++ +L ERI + +
Sbjct: 674 RSNMPKLGSRSGFGERNATC-GRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPT 732
Query: 465 WKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ + E LY +EH I++++ +L+ + ++ + G L
Sbjct: 733 ENIRNMYSEPSHLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMG 789
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 557
G R E ++L NN++ I ++ +
Sbjct: 790 GRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 822
Score = 99 (39.9 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 850 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 885
Score = 81 (33.6 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ K +++ + E+ L F+ V + DPDIL+G+ I F LL+R
Sbjct: 609 IKKKNMEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQR 657
Score = 63 (27.2 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
D ++ GILP+ ++++++ R VKQ MK+ + L
Sbjct: 910 DPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDL 945
Score = 41 (19.5 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 152 PFGCIASRESNQSPPN-----KDSIHEAEITHPDCSKSSQ 186
P G IAS S + PP K + ++ P+C + Q
Sbjct: 209 PSGKIASPVSRKEPPLTPVPLKRAEFAGDLAQPECPEDEQ 248
>UNIPROTKB|O89042 [details] [associations]
symbol:Pola1 "DNA polymerase alpha catalytic subunit"
species:10116 "Rattus norvegicus" [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
RGD:621816 GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0046872 GO:GO:0008283 GO:GO:0000785 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0008408
GO:GO:0017076 GO:GO:0006303 GO:GO:0003896 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 CTD:5422 HOVERGEN:HBG080008 GO:GO:0019103
OrthoDB:EOG43XV2M EMBL:AJ011605 IPI:IPI00764174 RefSeq:NP_445931.1
UniGene:Rn.187125 UniGene:Rn.92345 ProteinModelPortal:O89042
SMR:O89042 STRING:O89042 PhosphoSite:O89042 PRIDE:O89042
GeneID:85241 KEGG:rno:85241 InParanoid:O89042 NextBio:617296
ArrayExpress:O89042 Genevestigator:O89042
GermOnline:ENSRNOG00000013322 Uniprot:O89042
Length = 1451
Score = 102 (41.0 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 42/213 (19%), Positives = 89/213 (41%)
Query: 347 LERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRIT 406
+E + E+ L F+ V + DPDIL+G+ I LL+R + ++ R+
Sbjct: 614 MEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQRINECKVPFWSKIGRLR 673
Query: 407 EVEK-RNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHS 464
+ SR GR++ ++ ++ ++ +SY ++ +L ERI + +
Sbjct: 674 RSNMPKLGSRSGFGERNATC-GRMICDVEISVKELIHCKSYHLSELVQQILKTERIVIPT 732
Query: 465 WKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ + E LY +EH I++++ +L+ + ++ + G L
Sbjct: 733 ENIRNMYSEPSHLLY---LLEHIWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMG 789
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 557
G R E ++L NN++ I ++ +
Sbjct: 790 GRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 822
Score = 99 (39.9 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 850 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 885
Score = 81 (33.6 bits), Expect = 1.0e-05, Sum P(4) = 1.0e-05
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ K +++ + E+ L F+ V + DPDIL+G+ I F LL+R
Sbjct: 609 IKKKNMEVEVAATERTLLGFFLAKVHKLDPDILVGHNICGFELEVLLQR 657
Score = 63 (27.2 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
D ++ GILP+ ++++++ R VKQ MK+ + L
Sbjct: 910 DPNLDMGILPREIRKLVERRKQVKQLMKQQDLNPDL 945
Score = 41 (19.5 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 152 PFGCIASRESNQSPPN-----KDSIHEAEITHPDCSKSSQ 186
P G IAS S + PP K + ++ P+C + Q
Sbjct: 209 PSGKIASPVSRKEPPLTPVPLKRAEFAGDLAQPECPEDEQ 248
>ZFIN|ZDB-GENE-030114-9 [details] [associations]
symbol:pola1 "polymerase (DNA directed), alpha 1"
species:7955 "Danio rerio" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IBA] [GO:0006260 "DNA replication"
evidence=IEA;IBA] [GO:0006139 "nucleobase-containing compound
metabolic process" evidence=IEA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IBA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
ZFIN:ZDB-GENE-030114-9 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:BX470095 IPI:IPI00898449
Ensembl:ENSDART00000128595 ArrayExpress:E7FB68 Bgee:E7FB68
Uniprot:E7FB68
Length = 1468
Score = 99 (39.9 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 851 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 886
Score = 87 (35.7 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 35/201 (17%), Positives = 83/201 (41%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK-RNS 413
E+ L F+ + + DPD+L+G++I LL+R V + ++ R+ +
Sbjct: 624 ERALLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQRINVCKVPHWSKIGRLRRANMPKLG 683
Query: 414 SRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWE 473
R GR+V ++ + + +SY ++ +L P+ + + ++
Sbjct: 684 GRSGFAEKSATC-GRLVCDIEISAKELIRCKSYNLTELVSQILKAERPVVPPENIRNFYS 742
Query: 474 HRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESI 533
THL + + ++ I++++ +L+ + ++ + G L G R E +
Sbjct: 743 DSTHLLYLLELTWMDAKL--ILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEYL 800
Query: 534 MLRLSRLNNFVAVSPSIKQRA 554
+L +F+ ++A
Sbjct: 801 LLHAFHERDFIVPDKQFFKKA 821
Score = 74 (31.1 bits), Expect = 1.5e-07, Sum P(3) = 1.5e-07
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKE 673
D+S+ GILPK ++++++ R VKQ MKE
Sbjct: 910 DQSLEMGILPKEIRKLVERRRQVKQLMKE 938
Score = 73 (30.8 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 16/49 (32%), Positives = 26/49 (53%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
VR K + E+ L F+ + + DPD+L+G++I F LL+R
Sbjct: 611 VRKKNGIVEIAGTERALLGFFLAKMHKIDPDVLVGHDIFGFDLEVLLQR 659
>UNIPROTKB|F6Y1C9 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9615 "Canis lupus
familiaris" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSCAFT00000021463 EMBL:AAEX03026211 Uniprot:F6Y1C9
Length = 1467
Score = 102 (41.0 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P++ Y I++LDF SLYPS+I +N CF+T
Sbjct: 849 LVLDPKAGFYDKFILLLDFNSLYPSIIQEFNICFTT 884
Score = 93 (37.8 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 42/223 (18%), Positives = 90/223 (40%)
Query: 340 TFSWGYLLERH----FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLG 395
TF Y+ E++ + E+ L F+ V + DPDI++G+ I LL+R V
Sbjct: 603 TFK-DYIKEKNVKVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCK 661
Query: 396 LNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV 455
+ ++ R+ + GR++ ++ + + +SY ++ +
Sbjct: 662 VPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQI 721
Query: 456 LH-ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLF 514
L ER+ + + + E LY +EH I++++ +L+ + ++ +
Sbjct: 722 LRTERVVIPMENVRNMYSESSHLLY---LLEHTWKDARFILQIMCELNVLPLALQITNIA 778
Query: 515 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 557
G L G R E ++L NN++ I ++ +
Sbjct: 779 GNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 821
Score = 82 (33.9 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ K +++ + E+ L F+ V + DPDI++G+ I F LL+R
Sbjct: 608 IKEKNVKVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR 656
Score = 64 (27.6 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
D + GILP+ ++++++ R VKQ MK+ + L
Sbjct: 909 DPGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDL 944
>UNIPROTKB|P09884 [details] [associations]
symbol:POLA1 "DNA polymerase alpha catalytic subunit"
species:9606 "Homo sapiens" [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0019048 "virus-host interaction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] [GO:0051539 "4 iron,
4 sulfur cluster binding" evidence=IEA] [GO:0046982 "protein
heterodimerization activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IMP]
[GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IMP;IDA] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0016363 "nuclear matrix" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IDA;TAS] [GO:0000166 "nucleotide binding"
evidence=IDA] [GO:0000785 "chromatin" evidence=IDA] [GO:0006272
"leading strand elongation" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IDA] [GO:0005635 "nuclear envelope"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0006303
"double-strand break repair via nonhomologous end joining"
evidence=IMP] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=IMP] [GO:0008283 "cell proliferation" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA;NAS] [GO:0005654
"nucleoplasm" evidence=IDA;TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=IMP;TAS] [GO:0006281 "DNA
repair" evidence=IDA] [GO:0000084 "S phase of mitotic cell cycle"
evidence=IDA;TAS] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0003896 "DNA primase activity" evidence=IDA] [GO:0006270 "DNA
replication initiation" evidence=IDA;TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000083
"regulation of transcription involved in G1/S phase of mitotic cell
cycle" evidence=TAS] [GO:0000216 "M/G1 transition of mitotic cell
cycle" evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0032201
"telomere maintenance via semi-conservative replication"
evidence=TAS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=IDA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 Reactome:REACT_115566 GO:GO:0019048
GO:GO:0005654 Reactome:REACT_21300 GO:GO:0005730 GO:GO:0000166
GO:GO:0046872 GO:GO:0003677 GO:GO:0008283 GO:GO:0003682
GO:GO:0051539 GO:GO:0006270 GO:GO:0003690 GO:GO:0001882
DrugBank:DB01073 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000216
GO:GO:0000084 GO:GO:0008408 GO:GO:0017076 GO:GO:0006303
GO:GO:0000722 GO:GO:0000083 Reactome:REACT_383 GO:GO:0003887
KO:K02320 DrugBank:DB00631 GO:GO:0032201 GO:GO:0006273
GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:X06745 EMBL:AY275833 EMBL:M64481
IPI:IPI00220317 PIR:S00257 RefSeq:NP_058633.2 UniGene:Hs.567319
PDB:1K0P PDB:1K18 PDB:1N5G PDBsum:1K0P PDBsum:1K18 PDBsum:1N5G
ProteinModelPortal:P09884 SMR:P09884 IntAct:P09884
MINT:MINT-1517478 STRING:P09884 PhosphoSite:P09884 DMDM:60392197
PaxDb:P09884 PRIDE:P09884 Ensembl:ENST00000379059 GeneID:5422
KEGG:hsa:5422 UCSC:uc004dbl.3 CTD:5422 GeneCards:GC0XP024712
H-InvDB:HIX0028476 HGNC:HGNC:9173 HPA:CAB012274 HPA:HPA002947
MIM:312040 neXtProt:NX_P09884 PharmGKB:PA162399856
HOVERGEN:HBG080008 PhylomeDB:P09884 BindingDB:P09884
ChEMBL:CHEMBL1828 ChiTaRS:POLA1 EvolutionaryTrace:P09884
GenomeRNAi:5422 NextBio:20977 ArrayExpress:P09884 Bgee:P09884
CleanEx:HS_POLA1 Genevestigator:P09884 GO:GO:0019103 Uniprot:P09884
Length = 1462
Score = 99 (39.9 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 843 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 878
Score = 92 (37.4 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 39/209 (18%), Positives = 89/209 (42%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRN 412
+ E+ L F+ V + DPDI++G+ I LL+R + + S+I +++ N
Sbjct: 613 ATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR---INVCKAPHWSKIGRLKRSN 669
Query: 413 SSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLL 468
+ ++ + GR++ ++ + + +SY ++ +L ER+ + +
Sbjct: 670 MPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQ 729
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQF 528
+ E LY +EH I++++ +L+ + ++ + G L G
Sbjct: 730 NMYSESSQLLY---LLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSE 786
Query: 529 RVESIMLRLSRLNNFVAVSPSIKQRAHMR 557
R E ++L NN++ I ++ +
Sbjct: 787 RNEFLLLHAFYENNYIVPDKQIFRKPQQK 815
Score = 79 (32.9 bits), Expect = 3.6e-06, Sum P(3) = 3.6e-06
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+ K +++ + E+ L F+ V + DPDI++G+ I F LL+R
Sbjct: 602 IEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR 650
Score = 68 (29.0 bits), Expect = 1.8e-07, Sum P(3) = 1.8e-07
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
D S+ GILP+ ++++++ R VKQ MK+ + L
Sbjct: 903 DPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDL 938
>UNIPROTKB|A6NMQ1 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 HOGENOM:HOG000163524 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 HGNC:HGNC:9173
HOVERGEN:HBG080008 ChiTaRS:POLA1 OrthoDB:EOG43XV2M EMBL:AC002504
EMBL:AC004655 EMBL:AC079375 EMBL:AC135280 IPI:IPI00647655
ProteinModelPortal:A6NMQ1 SMR:A6NMQ1 STRING:A6NMQ1 PRIDE:A6NMQ1
Ensembl:ENST00000379068 ArrayExpress:A6NMQ1 Bgee:A6NMQ1
Uniprot:A6NMQ1
Length = 1468
Score = 99 (39.9 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 849 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 884
Score = 92 (37.4 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 39/209 (18%), Positives = 89/209 (42%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRN 412
+ E+ L F+ V + DPDI++G+ I LL+R + + S+I +++ N
Sbjct: 619 ATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR---INVCKAPHWSKIGRLKRSN 675
Query: 413 SSRDEVKN---TQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLL 468
+ ++ + GR++ ++ + + +SY ++ +L ER+ + +
Sbjct: 676 MPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQILKTERVVIPMENIQ 735
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQF 528
+ E LY +EH I++++ +L+ + ++ + G L G
Sbjct: 736 NMYSESSQLLY---LLEHTWKDAKFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSE 792
Query: 529 RVESIMLRLSRLNNFVAVSPSIKQRAHMR 557
R E ++L NN++ I ++ +
Sbjct: 793 RNEFLLLHAFYENNYIVPDKQIFRKPQQK 821
Score = 79 (32.9 bits), Expect = 3.7e-06, Sum P(3) = 3.7e-06
Identities = 15/49 (30%), Positives = 27/49 (55%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+ K +++ + E+ L F+ V + DPDI++G+ I F LL+R
Sbjct: 608 IEKKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR 656
Score = 68 (29.0 bits), Expect = 1.9e-07, Sum P(3) = 1.9e-07
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
D S+ GILP+ ++++++ R VKQ MK+ + L
Sbjct: 909 DPSLEMGILPREIRKLVERRKQVKQLMKQQDLNPDL 944
>POMBASE|SPAC3H5.06c [details] [associations]
symbol:pol1 "DNA polymerase alpha catalytic subunit"
species:4896 "Schizosaccharomyces pombe" [GO:0000723 "telomere
maintenance" evidence=IMP] [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IMP] [GO:0000790
"nuclear chromatin" evidence=IDA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0003688 "DNA replication origin binding"
evidence=IDA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IGI] [GO:0006269 "DNA
replication, synthesis of RNA primer" evidence=IGI] [GO:0006270
"DNA replication initiation" evidence=IMP] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IMP] [GO:0043596 "nuclear
replication fork" evidence=IGI] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
PomBase:SPAC3H5.06c EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0046872 GO:GO:0051539 GO:GO:0003688
GO:GO:0000790 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0000723 GO:GO:0033314 GO:GO:0003887 KO:K02320 GO:GO:0006269
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 EMBL:X58299
EMBL:X69673 EMBL:AB027936 PIR:S15993 RefSeq:NP_594186.1
ProteinModelPortal:P28040 IntAct:P28040 STRING:P28040
EnsemblFungi:SPAC3H5.06c.1 GeneID:2543629 KEGG:spo:SPAC3H5.06c
HOGENOM:HOG000163524 OMA:GSGTDME OrthoDB:EOG4K0TWK NextBio:20804635
GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Uniprot:P28040
Length = 1405
Score = 111 (44.1 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+ EP+ LY I+V+DF SLYPS+I YN CF+T
Sbjct: 829 LVFEPQKGLYETCILVMDFNSLYPSIIQEYNICFTT 864
Score = 102 (41.0 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 44/209 (21%), Positives = 88/209 (42%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE-KRN 412
+E L + F+ VR +DPD+ G++ E + + LL R ++ + R+ E R+
Sbjct: 601 SEVSLLNNFLNKVRTYDPDVYFGHDFE-MCYSVLLSRLKERKIHNWSSIGRLRRSEWPRS 659
Query: 413 SSRDEVKNTQLQM-PGRIVINLWRLL-RHEVNLQSYTFENIMYHVLH-ERIPLHSWKLLT 469
+R + + Q+ GR++ +L R + QS++ I+ L +R ++ K L
Sbjct: 660 FNRSSQQFVEKQIIAGRLMCDLSNDFGRSMIKAQSWSLSEIVLKELDIKRQDINQEKALQ 719
Query: 470 CWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFR 529
W + L ++ H I I + ++ + + + + G + L+ R
Sbjct: 720 SWTDTAHGLLDYLV--HCEIDTFFIAAVAFKIQMLQLSKNLTNIAGNSWARTLTGTRAER 777
Query: 530 VESIMLRLSRLNNFVAVSPSIKQRAHMRA 558
E I+L + N ++ R H A
Sbjct: 778 NEYILLHEFKKNGYIVPDKQQSIRRHAEA 806
Score = 40 (19.1 bits), Expect = 5.7e-07, Sum P(3) = 5.7e-07
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 62 IVDVKCFEESSLERSMKPDDRPS 84
++ + FE +E+ + +D PS
Sbjct: 546 MISARIFENVDIEKGLPANDMPS 568
>UNIPROTKB|E2QVU2 [details] [associations]
symbol:POLA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0001882 "nucleoside
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 Ensembl:ENSCAFT00000021463 Uniprot:E2QVU2
Length = 1357
Score = 95 (38.5 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 18/37 (48%), Positives = 28/37 (75%)
Query: 564 LILEPESRLYTDP-IIVLDFQSLYPSVIIAYNYCFST 599
L+L+P++ + D I++LDF SLYPS+I +N CF+T
Sbjct: 849 LVLDPKAAGFYDKFILLLDFNSLYPSIIQEFNICFTT 885
Score = 93 (37.8 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 42/223 (18%), Positives = 90/223 (40%)
Query: 340 TFSWGYLLERH----FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLG 395
TF Y+ E++ + E+ L F+ V + DPDI++G+ I LL+R V
Sbjct: 603 TFK-DYIKEKNVKVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCK 661
Query: 396 LNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV 455
+ ++ R+ + GR++ ++ + + +SY ++ +
Sbjct: 662 VPHWSKIGRLKRSNMPKLGGRSGFGERNATCGRMICDVEISAKELIRCKSYHLSELVQQI 721
Query: 456 LH-ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLF 514
L ER+ + + + E LY +EH I++++ +L+ + ++ +
Sbjct: 722 LRTERVVIPMENVRNMYSESSHLLY---LLEHTWKDARFILQIMCELNVLPLALQITNIA 778
Query: 515 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 557
G L G R E ++L NN++ I ++ +
Sbjct: 779 GNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 821
Score = 82 (33.9 bits), Expect = 9.4e-06, Sum P(3) = 9.4e-06
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ K +++ + E+ L F+ V + DPDI++G+ I F LL+R
Sbjct: 608 IKEKNVKVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR 656
Score = 64 (27.6 bits), Expect = 7.6e-07, Sum P(3) = 7.6e-07
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESL 680
D + GILP+ ++++++ R VKQ MK+ + L
Sbjct: 910 DPGLEMGILPREIRKLVERRKQVKQLMKQQDLNPDL 945
>FB|FBgn0046296 [details] [associations]
symbol:CG11534 species:7227 "Drosophila melanogaster"
[GO:0019992 "diacylglycerol binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR001965
InterPro:IPR002219 Pfam:PF00130 PROSITE:PS00479 PROSITE:PS50081
SMART:SM00109 SMART:SM00184 SMART:SM00249 EMBL:AE014296
GO:GO:0035556 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
eggNOG:NOG304177 InterPro:IPR025258 Pfam:PF13901 EMBL:AY058352
RefSeq:NP_648549.1 UniGene:Dm.4305 ProteinModelPortal:Q9VTT9
SMR:Q9VTT9 IntAct:Q9VTT9 MINT:MINT-787922 PRIDE:Q9VTT9
EnsemblMetazoa:FBtr0075995 GeneID:39381 KEGG:dme:Dmel_CG11534
UCSC:CG11534-RA FlyBase:FBgn0046296 GeneTree:ENSGT00550000074570
InParanoid:Q9VTT9 OMA:HTSVCAD OrthoDB:EOG4KD52D PhylomeDB:Q9VTT9
GenomeRNAi:39381 NextBio:813362 Bgee:Q9VTT9 Uniprot:Q9VTT9
Length = 492
Score = 146 (56.5 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 28/69 (40%), Positives = 43/69 (62%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKC--HSQLPCKRCIRMRIRR-- 56
+CLA+ +ICE+C++ EVIFP+ + +C+QC + FH C + C +CIR++ RR
Sbjct: 407 MCLAQAYICEICSNNEVIFPFDDGCI-KCDQCNSIFHRVCLTRKNMICPKCIRIQERRLQ 465
Query: 57 -DSMKGIVD 64
D MK D
Sbjct: 466 LDRMKSTED 474
>UNIPROTKB|Q59J89 [details] [associations]
symbol:Q59J89 "DNA polymerase" species:34903 "Trachemys
scripta" [GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178526 Uniprot:Q59J89
Length = 1441
Score = 99 (39.9 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 812 LVLDPKVGFYDTFILLLDFNSLYPSIIQEFNICFTT 847
Score = 80 (33.2 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVS 353
+++K + + E+ L F+ V + DPDI++G+ I F LL+R VS
Sbjct: 572 IKSKNSNVEIAATERTLLGFFLAKVHKIDPDIIVGHNIYGFDLEVLLQRINVS 624
Score = 79 (32.9 bits), Expect = 2.7e-06, Sum P(3) = 2.7e-06
Identities = 35/185 (18%), Positives = 82/185 (44%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITE-VEKR 411
+ E+ L F+ V + DPDI++G+ I LL+R V + ++ R+ + +
Sbjct: 583 ATERTLLGFFLAKVHKIDPDIIVGHNIYGFDLEVLLQRINVSKVPHWSKIGRLRRSIMPK 642
Query: 412 NSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLLTC 470
R GR++ ++ + + +SY +++ +L ERI + ++
Sbjct: 643 LGGRGGFAERNAAC-GRMICDVEISAKELIRCKSYHLSELVHQILKTERITIPPEEIRNM 701
Query: 471 WWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV 530
+ + +HL +M +E+ I++++ +L+ + ++ + G + G R
Sbjct: 702 YSDS-SHLL-YM-LENTWTDARFILQIMCELNVLPLALQITNISGNVMSRTMMGGRSERN 758
Query: 531 ESIML 535
E ++L
Sbjct: 759 EFLLL 763
Score = 69 (29.3 bits), Expect = 2.2e-06, Sum P(3) = 2.2e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKE 673
D S+ GILPK ++++++ R VKQ MK+
Sbjct: 872 DPSLEMGILPKEIRKLVERRRQVKQLMKQ 900
>UNIPROTKB|F1NR19 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9031 "Gallus gallus"
[GO:0001882 "nucleoside binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0000084 "S
phase of mitotic cell cycle" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000785 "chromatin" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0003896 "DNA primase activity"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006273 "lagging strand
elongation" evidence=IEA] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0016363 "nuclear matrix"
evidence=IEA] [GO:0046982 "protein heterodimerization activity"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:AADN02011218 EMBL:AADN02011219
EMBL:AADN02011220 EMBL:AADN02011221 EMBL:AADN02011222
EMBL:AADN02011223 IPI:IPI00588123 Ensembl:ENSGALT00000026316
Uniprot:F1NR19
Length = 1462
Score = 99 (39.9 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 18/36 (50%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 833 LVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 868
Score = 80 (33.2 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 300 EVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
E++ K ++ + E+ L F+ + + DPD+++G+ I F LL+R
Sbjct: 592 EIKKKNAKIEIAATERTLLGFFLAKIHKIDPDVVVGHNIYGFDLEVLLQR 641
Score = 69 (29.3 bits), Expect = 2.3e-06, Sum P(3) = 2.3e-06
Identities = 13/29 (44%), Positives = 21/29 (72%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKE 673
D S+ GILPK ++++++ R VKQ MK+
Sbjct: 893 DPSLEMGILPKEIRKLVERRRQVKQLMKQ 921
>MGI|MGI:1346331 [details] [associations]
symbol:Def8 "differentially expressed in FDCP 8"
species:10090 "Mus musculus" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR002219 PROSITE:PS00479
PROSITE:PS50081 SMART:SM00109 SMART:SM00184 MGI:MGI:1346331
GO:GO:0035556 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622 CTD:54849
eggNOG:NOG304177 HOGENOM:HOG000045708 HOVERGEN:HBG107807
OrthoDB:EOG4Z36DQ InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 OMA:HTSVCAD EMBL:AK034028
EMBL:AK050405 EMBL:AK081295 EMBL:AK087778 EMBL:AK133979
EMBL:AK150334 EMBL:AK150994 EMBL:AK164147 EMBL:BC003306 EMBL:X96708
IPI:IPI00319894 IPI:IPI00653406 RefSeq:NP_001240712.1
RefSeq:NP_001240713.1 RefSeq:NP_473387.1 UniGene:Mm.275127
UniGene:Mm.489955 ProteinModelPortal:Q99J78 SMR:Q99J78
STRING:Q99J78 PhosphoSite:Q99J78 PRIDE:Q99J78
Ensembl:ENSMUST00000001522 Ensembl:ENSMUST00000065534
Ensembl:ENSMUST00000093049 Ensembl:ENSMUST00000108830 GeneID:23854
KEGG:mmu:23854 UCSC:uc009nvx.1 UCSC:uc009nvy.1 NextBio:303549
Bgee:Q99J78 CleanEx:MM_DEF8 Genevestigator:Q99J78 Uniprot:Q99J78
Length = 448
Score = 142 (55.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIRMRIRRDSM 59
C A+GF+CELC +V+FP+ S CN C A FH C+ + C +C R+ +R+ S+
Sbjct: 380 CQAKGFVCELCKEGDVLFPFD-SHTSVCNDCSAVFHRDCYYDNSTTCPKCARLTLRKQSL 438
>RGD|1309008 [details] [associations]
symbol:Def8 "differentially expressed in FDCP 8 homolog (mouse)"
species:10116 "Rattus norvegicus" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] InterPro:IPR001841 InterPro:IPR002219 Pfam:PF00130
PROSITE:PS00479 PROSITE:PS50081 SMART:SM00109 SMART:SM00184
RGD:1309008 GO:GO:0035556 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
CTD:54849 eggNOG:NOG304177 HOGENOM:HOG000045708 HOVERGEN:HBG107807
OrthoDB:EOG4Z36DQ InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 EMBL:BC097376 IPI:IPI00360062
RefSeq:NP_001019945.1 UniGene:Rn.199064 STRING:Q4V8I4
Ensembl:ENSRNOT00000000281 GeneID:307973 KEGG:rno:307973
UCSC:RGD:1309008 InParanoid:Q4V8I4 NextBio:658179
Genevestigator:Q4V8I4 Uniprot:Q4V8I4
Length = 451
Score = 142 (55.0 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 24/60 (40%), Positives = 36/60 (60%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIRMRIRRDSM 59
C A+GF+CELC +V+FP+ S CN C A FH C+ + C +C R+ +R+ S+
Sbjct: 383 CQAKGFVCELCKEGDVLFPFD-SHTSVCNDCSAVFHRDCYYDNSTTCPKCARLTLRKQSL 441
>UNIPROTKB|Q7RBM5 [details] [associations]
symbol:PY06115 "DNA polymerase" species:73239 "Plasmodium
yoelii yoelii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR017964 Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 TIGRFAMs:TIGR00592 EMBL:AABL01002033
RefSeq:XP_726706.1 ProteinModelPortal:Q7RBM5 STRING:Q7RBM5
GeneID:3792046 KEGG:pyo:PY06115 EuPathDB:PlasmoDB:PY06115
Uniprot:Q7RBM5
Length = 906
Score = 148 (57.2 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 46/136 (33%), Positives = 71/136 (52%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPF-------- 615
L+LEP Y ++ LDF SLYPS+II YN CFST +L +S S
Sbjct: 120 LVLEPLCGYYDTYVLYLDFNSLYPSIIIEYNICFST-FNMKNYLALSGSTSEEIQEETGK 178
Query: 616 -GCIDLNVS-IRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
ID N S + +L K Q IS + + DK+ + GILP +L+++++ R +K+ +
Sbjct: 179 RNIIDYNDSDVNNLDKDDQVGDIS--NIDYFDKT-KPGILPSILKQLVEKRAFIKKLIAS 235
Query: 674 YKFSESLRNLTMLNSM 689
K E + L ++ S+
Sbjct: 236 EKNKEK-KELLLVQSL 250
Score = 46 (21.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 442 NLQSYTFENIMYHVLHERIPLHSWKLLT 469
+L SYT E + Y +LHE H K +T
Sbjct: 69 SLLSYTSECVEYFLLHE---YHKKKYIT 93
>UNIPROTKB|P95979 [details] [associations]
symbol:dpo3 "DNA polymerase 3" species:273057 "Sulfolobus
solfataricus P2" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 Pfam:PF03104 PROSITE:PS00116 SMART:SM00486
GO:GO:0005694 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
SUPFAM:SSF53098 EMBL:AE006641 GenomeReviews:AE006641_GR
GO:GO:0008408 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0019985 OMA:RSFRPYF KO:K02319 EMBL:Y08257 PIR:S75407
RefSeq:NP_341651.1 ProteinModelPortal:P95979 PRIDE:P95979
GeneID:1455332 KEGG:sso:SSO0081 HOGENOM:HOG000222650
ProtClustDB:CLSK2484407 Uniprot:P95979
Length = 764
Score = 144 (55.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 66/308 (21%), Positives = 134/308 (43%)
Query: 290 ILIGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
IL E +PE+RT + S L N R+ DP +++ + + L+
Sbjct: 155 ILSHYEGNMPELRTIGVDFQIYSKYGSL------NPRK-DPIVVMSLWSKEGPMQFSLDE 207
Query: 350 HFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE 409
++ ++ F++ + +DPDI+ Y+ + L W Y+ ER LG+ + ++ R
Sbjct: 208 GI--DDLKIIRRFVDYILNYDPDIIFVYDSDLLPWKYITERASSLGVKI--DIGR----- 258
Query: 410 KRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHV-LHERIPLHSWKLL 468
K S + GR+ ++L LL +E +L ++ ++ + W +
Sbjct: 259 KIGSEVSVGTYGHYSISGRLNVDLTGLLVNERSLGHVDLIDVSNYLGISPSRYSFKWYEI 318
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQF--YEVLSRGS 526
+ +W++ + + Y I I L+ + SE+ ++ G+ V S G+
Sbjct: 319 SRYWDNEKNR---RIIREYSIENARSIYLLGNY-LLSTYSELVKIVGLPLDKLSVASWGN 374
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLY 586
R+E+ ++R + + + P + + +I++P+ +YTD + VLD S+Y
Sbjct: 375 --RIETSLIRTATKSG--ELIPIRMDNPNRPSKIKKNIIIQPKVGIYTD-VYVLDISSVY 429
Query: 587 PSVIIAYN 594
VI +N
Sbjct: 430 SLVIRKFN 437
>CGD|CAL0002431 [details] [associations]
symbol:POL1 species:5476 "Candida albicans" [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006279 "premeiotic DNA replication"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IEA] [GO:0000723 "telomere maintenance"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
CGD:CAL0002431 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACQ01000003 EMBL:AACQ01000004
GO:GO:0003887 KO:K02320 eggNOG:COG0417 Gene3D:3.90.1600.10
InterPro:IPR023211 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 RefSeq:XP_722942.1 RefSeq:XP_723089.1
STRING:Q5ANM8 GeneID:3635144 GeneID:3635340 KEGG:cal:CaO19.13294
KEGG:cal:CaO19.5873 Uniprot:Q5ANM8
Length = 1470
Score = 106 (42.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 18/36 (50%), Positives = 27/36 (75%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+ EPE L+ + ++V+DF SLYPS+I +N CF+T
Sbjct: 843 LVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTT 878
Score = 92 (37.4 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 45/213 (21%), Positives = 95/213 (44%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER----GYVLGLNLNQELSRITE-- 407
+EK L + ++ DPD+ IG+ +E +S L+ R V L + R
Sbjct: 604 SEKVLLNALAAKIKSLDPDVFIGHRLENISLDVLVHRMNDNNVVTWSALGRRNRRQWPYM 663
Query: 408 VEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFE-NIMYHVL-HER-IPLH- 463
+ K NSS + + GR++ ++ + + ++ +++ + MY V+ H++ P+
Sbjct: 664 INKSNSSYNNSLLIRDVFQGRLLCDIANEMGQSLTMKCQSWDLHEMYDVVCHKKHSPVEI 723
Query: 464 SWKLLTCWWEHRTHLYKWMTVEHYL-IRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVL 522
+++ L + HL+ E+ L ++ T I Q+ + + ++ + G + L
Sbjct: 724 NYQNLK--YAEDAHLFLMALKENELNVKQTAEIAFATQI--LSLSKQLTNIAGNAWSHTL 779
Query: 523 SRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAH 555
S R E I+L + NN++ P + + H
Sbjct: 780 SGTRAGRNEYILLHEFKRNNYIV--PDKEDKTH 810
Score = 86 (35.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 43/195 (22%), Positives = 81/195 (41%)
Query: 190 NPDLFKSFI-RKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENY----Y 244
N ++F+SFI ++ + P DAM + ++ +D +++++ ++
Sbjct: 466 NANMFESFIMQRNIMGPCWLEIRGGDFDAMQNASHCQVEVVVDRPSQISTIDKDAPSSPN 525
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYL-YTCPPEEDRKVGIIL-----IGQES-- 296
LTV A+ + + A A ++ L P ED K + +G S
Sbjct: 526 LTVTAISMQTMLNAKTNKQEVVSVSLATYFDLPQDAPISEDIKPDDVFTLARPVGSVSFP 585
Query: 297 -ELPEVRTKP-IQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSN 354
L ++ K Q+ +EK L + ++ DPD+ IG+ +E S L+ R +N
Sbjct: 586 PRLQQLAEKGGFQLRTCPSEKVLLNALAAKIKSLDPDVFIGHRLENISLDVLVHRMNDNN 645
Query: 355 EKELFSIFIENVRQW 369
++ N RQW
Sbjct: 646 VVTWSALGRRNRRQW 660
>DICTYBASE|DDB_G0293570 [details] [associations]
symbol:DDB_G0293570 "RUN domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0293570 EMBL:AAFI02000218 InterPro:IPR025258
Pfam:PF13901 InterPro:IPR004012 Pfam:PF02759 SMART:SM00593
PROSITE:PS50826 eggNOG:NOG283042 RefSeq:XP_629014.1
ProteinModelPortal:Q54BL5 EnsemblProtists:DDB0235371 GeneID:8629298
KEGG:ddi:DDB_G0293570 InParanoid:Q54BL5 OMA:KTSASNI Uniprot:Q54BL5
Length = 1353
Score = 145 (56.1 bits), Expect = 5.3e-06, P = 5.3e-06
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRR 56
LC A+G IC+ CN++ I+P+ +S+V +C C + H C+ + C +CIR+ R
Sbjct: 1287 LCAAKGSICQFCNNDSPIYPYHISTVQQCQNCKSVSHKSCYQAIKCPKCIRLATAR 1342
>UNIPROTKB|Q59J90 [details] [associations]
symbol:Q59J90 "DNA polymerase" species:8296 "Ambystoma
mexicanum" [GO:0000084 "S phase of mitotic cell cycle"
evidence=ISS] [GO:0000166 "nucleotide binding" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003682 "chromatin
binding" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005635 "nuclear envelope" evidence=ISS] [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006273 "lagging strand elongation" evidence=ISS]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=ISS] [GO:0008283 "cell proliferation"
evidence=ISS] [GO:0016363 "nuclear matrix" evidence=ISS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0000785 "chromatin"
evidence=ISS] [GO:0003896 "DNA primase activity" evidence=ISS]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0005635
GO:GO:0005654 GO:GO:0005730 GO:GO:0000166 GO:GO:0003677
GO:GO:0008283 GO:GO:0003682 GO:GO:0006270 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084 GO:GO:0006303
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 HOVERGEN:HBG080008 EMBL:AB178525 Uniprot:Q59J90
Length = 1409
Score = 100 (40.3 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 19/49 (38%), Positives = 32/49 (65%)
Query: 551 KQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
+++ +A + L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 777 QKKVRKKAAYAGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 825
Score = 97 (39.2 bits), Expect = 6.1e-06, Sum P(2) = 6.1e-06
Identities = 37/201 (18%), Positives = 86/201 (42%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITE-VEKRNS 413
E+ L + + + DPD+++G++I LL+R V + ++ R+ + +
Sbjct: 562 ERTLLGFLLAKIHKIDPDVIVGHDIYGFDLEVLLQRINVCKVPHWSKIGRLRRSIMPKLG 621
Query: 414 SRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLLTCWW 472
R GR++ ++ + + +SY +++ +L ER+ + + +
Sbjct: 622 GRSGFAERNAAC-GRMICDVQISAKELIRCKSYHLSELVHQILKTERLIIPGENIRNYYS 680
Query: 473 EHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVES 532
+ LY +EH + I++++ +L+ + ++ + G L G R E
Sbjct: 681 DSPQLLYM---LEHTWLDTKFILQIMCELNVLPLALQITNIAGNVMSRTLMGGRSERNEY 737
Query: 533 IMLRLSRLNNFVAVS-PSIKQ 552
++L NNF+ P+ K+
Sbjct: 738 LLLHAFYENNFIVPDKPTFKK 758
>UNIPROTKB|F1P7G0 [details] [associations]
symbol:DEF8 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR002219 Pfam:PF00130 PROSITE:PS00479
PROSITE:PS50081 SMART:SM00109 SMART:SM00184 GO:GO:0035556
GO:GO:0046872 GO:GO:0008270 GO:GO:0005622 InterPro:IPR025258
Pfam:PF13901 GeneTree:ENSGT00550000074570 OMA:HTSVCAD
EMBL:AAEX03003947 Ensembl:ENSCAFT00000031505 Uniprot:F1P7G0
Length = 451
Score = 138 (53.6 bits), Expect = 6.8e-06, P = 6.8e-06
Identities = 23/60 (38%), Positives = 36/60 (60%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIRMRIRRDSM 59
C A+GF+CELC +V+FP+ S C +C A FH C+ + C +C R+ +R+ S+
Sbjct: 383 CQAKGFVCELCREGDVLFPFD-SHTSVCTECSAVFHRDCYYDNSTTCPKCARLTLRKQSL 441
>UNIPROTKB|G3X7G7 [details] [associations]
symbol:Bt.24525 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0046872 "metal ion binding" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0005543
"phospholipid binding" evidence=IEA] InterPro:IPR001849
InterPro:IPR002219 PROSITE:PS50003 PROSITE:PS50081 SMART:SM00109
SMART:SM00233 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0035556 GO:GO:0046872 GO:GO:0005622 InterPro:IPR025258
Pfam:PF13901 GeneTree:ENSGT00550000074570 InterPro:IPR004012
Pfam:PF02759 SMART:SM00593 PROSITE:PS50826 OMA:PAFFKII
EMBL:DAAA02049270 EMBL:DAAA02049271 EMBL:DAAA02049272
Ensembl:ENSBTAT00000027135 Uniprot:G3X7G7
Length = 1066
Score = 142 (55.0 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--QLPCKRCIRMR 53
LC RGFIC++C+ ++IFP++ + RC++C FH C + Q C RC R R
Sbjct: 1003 LCTQRGFICQICHHHDIIFPFEFDTTVRCSECKTVFHQTCQAVVQKGCPRCARRR 1057
>UNIPROTKB|F1MUK5 [details] [associations]
symbol:DEF8 "Differentially-expressed in FDCP 8 homolog"
species:9913 "Bos taurus" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR002219 Pfam:PF00130
PROSITE:PS00479 PROSITE:PS50081 SMART:SM00109 SMART:SM00184
GO:GO:0035556 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
IPI:IPI00854429 InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 OMA:HTSVCAD EMBL:DAAA02046282
EMBL:DAAA02046278 EMBL:DAAA02046279 EMBL:DAAA02046280
EMBL:DAAA02046281 Ensembl:ENSBTAT00000004669 Uniprot:F1MUK5
Length = 446
Score = 137 (53.3 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIRMRIRRDSM 59
C A+GF+CELC +V+FP+ S C C A FH C+ + C RC R+ +R+ S+
Sbjct: 378 CQAKGFVCELCREGDVLFPFD-SHTSVCADCSAVFHRDCYYDNSTTCPRCARLTLRKQSL 436
>UNIPROTKB|A5PJM7 [details] [associations]
symbol:DEF8 "Differentially expressed in FDCP 8 homolog"
species:9913 "Bos taurus" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 InterPro:IPR002219 Pfam:PF00130
PROSITE:PS00479 PROSITE:PS50081 SMART:SM00109 SMART:SM00184
GO:GO:0035556 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
EMBL:BC142174 IPI:IPI00854429 RefSeq:NP_001092427.1
UniGene:Bt.39404 PRIDE:A5PJM7 GeneID:513349 KEGG:bta:513349
CTD:54849 eggNOG:NOG304177 HOGENOM:HOG000045708 HOVERGEN:HBG107807
InParanoid:A5PJM7 OrthoDB:EOG4Z36DQ NextBio:20870825
InterPro:IPR025258 Pfam:PF13901 Uniprot:A5PJM7
Length = 447
Score = 137 (53.3 bits), Expect = 8.6e-06, P = 8.6e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIRMRIRRDSM 59
C A+GF+CELC +V+FP+ S C C A FH C+ + C RC R+ +R+ S+
Sbjct: 379 CQAKGFVCELCREGDVLFPFD-SHTSVCADCSAVFHRDCYYDNSTTCPRCARLTLRKQSL 437
>UNIPROTKB|F1S6M6 [details] [associations]
symbol:DEF8 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
InterPro:IPR001841 InterPro:IPR002219 Pfam:PF00130 PROSITE:PS00479
PROSITE:PS50081 SMART:SM00109 SMART:SM00184 GO:GO:0035556
GO:GO:0046872 GO:GO:0008270 GO:GO:0005622 InterPro:IPR025258
Pfam:PF13901 GeneTree:ENSGT00550000074570 OMA:HTSVCAD EMBL:FP102308
Ensembl:ENSSSCT00000002930 Uniprot:F1S6M6
Length = 450
Score = 137 (53.3 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 24/60 (40%), Positives = 35/60 (58%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIRMRIRRDSM 59
C A+GF+CELC +V+FP+ S C C A FH C+ + C RC R+ +R+ S+
Sbjct: 382 CQAKGFVCELCREGDVLFPFD-SHTSVCADCSAVFHRDCYYDNSTTCPRCARLTLRKQSL 440
>UNIPROTKB|F1RRQ5 [details] [associations]
symbol:PLEKHM1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046872 "metal ion binding" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0005543
"phospholipid binding" evidence=IEA] InterPro:IPR001849
InterPro:IPR002219 PROSITE:PS50003 PROSITE:PS50081 SMART:SM00109
SMART:SM00233 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0035556 GO:GO:0046872 GO:GO:0005622 InterPro:IPR025258
Pfam:PF13901 GeneTree:ENSGT00550000074570 InterPro:IPR004012
Pfam:PF02759 SMART:SM00593 PROSITE:PS50826 OMA:PAFFKII
EMBL:FP016139 Ensembl:ENSSSCT00000018861 Uniprot:F1RRQ5
Length = 1048
Score = 140 (54.3 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 22/55 (40%), Positives = 33/55 (60%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CKRCIRMR 53
LC RGFIC++C +++IFP++ + RC +C FH C + + C RC R R
Sbjct: 987 LCTQRGFICQICRHQDIIFPFEFDTTVRCGECKTVFHQSCQAVVKKGCPRCARRR 1041
>UNIPROTKB|H3BUG7 [details] [associations]
symbol:DEF8 "Differentially-expressed in FDCP 8 homolog"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] InterPro:IPR001841 InterPro:IPR002219 Pfam:PF00130
PROSITE:PS00479 PROSITE:PS50081 SMART:SM00109 SMART:SM00184
GO:GO:0035556 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
EMBL:AC092143 CTD:54849 InterPro:IPR025258 Pfam:PF13901
RefSeq:NP_001229748.1 UniGene:Hs.62771 GeneID:54849 KEGG:hsa:54849
HGNC:HGNC:25969 ChiTaRS:DEF8 GenomeRNAi:54849
ProteinModelPortal:H3BUG7 SMR:H3BUG7 Ensembl:ENST00000563795
Bgee:H3BUG7 Uniprot:H3BUG7
Length = 434
Score = 134 (52.2 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIRMRIRRDSM 59
C A+GF+CELC +V+FP+ S C C A FH C+ + C +C R+ +R+ S+
Sbjct: 366 CQAKGFVCELCREGDVLFPFD-SHTSVCADCSAVFHRDCYYDNSTTCPKCARLSLRKQSL 424
>UNIPROTKB|E1BJF4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9913 "Bos taurus"
[GO:0046982 "protein heterodimerization activity" evidence=IEA]
[GO:0016363 "nuclear matrix" evidence=IEA] [GO:0008283 "cell
proliferation" evidence=IEA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IEA] [GO:0006273
"lagging strand elongation" evidence=IEA] [GO:0006272 "leading
strand elongation" evidence=IEA] [GO:0006270 "DNA replication
initiation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0005654 "nucleoplasm"
evidence=IEA] [GO:0005635 "nuclear envelope" evidence=IEA]
[GO:0003896 "DNA primase activity" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000785 "chromatin" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000084 "S phase of mitotic
cell cycle" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005737 GO:GO:0005635 GO:GO:0005654 GO:GO:0005730
GO:GO:0000166 GO:GO:0003677 GO:GO:0008283 GO:GO:0000785
GO:GO:0003682 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0016363 GO:GO:0000084 GO:GO:0006303 GO:GO:0003896
GO:GO:0003887 GO:GO:0006273 GO:GO:0006269 GO:GO:0006272
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658 OMA:GSGTDME
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
GeneTree:ENSGT00550000074891 EMBL:DAAA02074352 IPI:IPI00717665
Ensembl:ENSBTAT00000010742 Uniprot:E1BJF4
Length = 1351
Score = 102 (41.0 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 552 QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
++ +A S L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 837 KKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 884
Score = 91 (37.1 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 41/196 (20%), Positives = 85/196 (43%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI--TEVEK 410
+ E+ L F+ V + DPDI++G+ I LL+R V + ++ R+ + + K
Sbjct: 619 ATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQRINVCKVPFWSKIGRLKRSNMPK 678
Query: 411 RNS-SRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLL 468
S KN GR++ ++ + + +SY ++ +L ERI + + +
Sbjct: 679 LGGRSGFGEKNATC---GRMICDVEISAKELIRCKSYHLSELVQQILKTERIVIPI-ETI 734
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQF 528
+ +HL +EH I++++ +L+ + ++ + G L G
Sbjct: 735 RNMYSDSSHLL--YLLEHTWKDARFILQIMCELNVLPLALQITNIAGNIMSRTLMGGRSE 792
Query: 529 RVESIMLRLSRLNNFV 544
R E ++L NN++
Sbjct: 793 RNEFLLLHAFYENNYI 808
Score = 81 (33.6 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 15/49 (30%), Positives = 28/49 (57%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
++ K +++ + E+ L F+ V + DPDI++G+ I F LL+R
Sbjct: 608 IKEKNVKVEVAATERTLLGFFLAKVHKIDPDIIVGHNIYGFELEVLLQR 656
Score = 44 (20.5 bits), Expect = 2.1e-05, Sum P(3) = 2.1e-05
Identities = 7/20 (35%), Positives = 15/20 (75%)
Query: 645 DKSIRCGILPKMLQEILDTR 664
D S+ GILP+ ++++++ R
Sbjct: 909 DPSLEMGILPREIRKLVERR 928
>RGD|1308010 [details] [associations]
symbol:Plekhm1 "pleckstrin homology domain containing, family M
(with RUN domain) member 1" species:10116 "Rattus norvegicus"
[GO:0005543 "phospholipid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001849 InterPro:IPR002219 PROSITE:PS00479
PROSITE:PS50003 PROSITE:PS50081 SMART:SM00109 SMART:SM00233
RGD:1308010 GO:GO:0005737 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0035556 GO:GO:0046872 InterPro:IPR025258
Pfam:PF13901 GeneTree:ENSGT00550000074570 InterPro:IPR004012
Pfam:PF02759 SMART:SM00593 PROSITE:PS50826 HSSP:Q9D394
eggNOG:NOG283042 CTD:9842 HOGENOM:HOG000247013 HOVERGEN:HBG056799
OMA:PAFFKII OrthoDB:EOG47SSD4 EMBL:BC087058 IPI:IPI00361263
RefSeq:NP_001009677.1 UniGene:Rn.101335 ProteinModelPortal:Q5PQS0
STRING:Q5PQS0 PRIDE:Q5PQS0 Ensembl:ENSRNOT00000037147 GeneID:303584
KEGG:rno:303584 UCSC:RGD:1308010 InParanoid:Q5PQS0 NextBio:651667
Genevestigator:Q5PQS0 Uniprot:Q5PQS0
Length = 1059
Score = 138 (53.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CKRCIRMR 53
LC RGFIC++C+ +++IFP++ + RC +C FH C + + C RC R R
Sbjct: 996 LCTQRGFICQICHHQDIIFPFEFDTTVRCAECRTVFHQSCQAVVRKGCPRCARRR 1050
>MGI|MGI:2443207 [details] [associations]
symbol:Plekhm1 "pleckstrin homology domain containing,
family M (with RUN domain) member 1" species:10090 "Mus musculus"
[GO:0005515 "protein binding" evidence=IPI] [GO:0005543
"phospholipid binding" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0046872 "metal ion binding" evidence=IEA] InterPro:IPR001849
InterPro:IPR002219 PROSITE:PS00479 PROSITE:PS50003 PROSITE:PS50081
SMART:SM00109 SMART:SM00233 MGI:MGI:2443207 GO:GO:0005737
GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0035556
GO:GO:0046872 InterPro:IPR025258 Pfam:PF13901
GeneTree:ENSGT00550000074570 InterPro:IPR004012 Pfam:PF02759
SMART:SM00593 PROSITE:PS50826 HSSP:Q9D394 eggNOG:NOG283042 CTD:9842
HOGENOM:HOG000247013 HOVERGEN:HBG056799 OMA:PAFFKII ChiTaRS:PLEKHM1
EMBL:AK154703 EMBL:AL772325 EMBL:AL929552 EMBL:BC038943
EMBL:BC053079 IPI:IPI00229739 RefSeq:NP_898855.1 UniGene:Mm.383308
ProteinModelPortal:Q7TSI1 SMR:Q7TSI1 IntAct:Q7TSI1 STRING:Q7TSI1
PhosphoSite:Q7TSI1 PRIDE:Q7TSI1 Ensembl:ENSMUST00000041272
GeneID:353047 KEGG:mmu:353047 UCSC:uc007lug.1 InParanoid:Q7TSI1
OrthoDB:EOG47SSD4 NextBio:400271 Bgee:Q7TSI1 Genevestigator:Q7TSI1
Uniprot:Q7TSI1
Length = 1074
Score = 138 (53.6 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CKRCIRMR 53
LC RGFIC++C+ +++IFP++ + RC +C FH C + + C RC R R
Sbjct: 1011 LCTQRGFICQICHHQDIIFPFEFDTTVRCAECRTVFHQSCQAVVRKGCPRCARRR 1065
>UNIPROTKB|Q6ZN54 [details] [associations]
symbol:DEF8 "Differentially expressed in FDCP 8 homolog"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] InterPro:IPR001841 InterPro:IPR002219 Pfam:PF00130
PROSITE:PS00479 PROSITE:PS50081 SMART:SM00109 SMART:SM00184
GO:GO:0035556 GO:GO:0046872 GO:GO:0008270 GO:GO:0005622
EMBL:CH471184 CTD:54849 eggNOG:NOG304177 HOVERGEN:HBG107807
OrthoDB:EOG4Z36DQ InterPro:IPR025258 Pfam:PF13901 OMA:HTSVCAD
EMBL:AK000193 EMBL:AK095051 EMBL:AK096485 EMBL:AK131370
EMBL:AK295880 EMBL:AK296410 EMBL:AK303510 EMBL:BC015482
EMBL:BC105592 IPI:IPI00182859 IPI:IPI00410572 IPI:IPI00885026
IPI:IPI00930114 IPI:IPI00930505 RefSeq:NP_001229745.1
RefSeq:NP_001229746.1 RefSeq:NP_001229747.1 RefSeq:NP_001229748.1
RefSeq:NP_001229749.1 RefSeq:NP_001229750.1 RefSeq:NP_001229751.1
RefSeq:NP_060172.1 RefSeq:NP_997397.1 UniGene:Hs.62771
ProteinModelPortal:Q6ZN54 SMR:Q6ZN54 IntAct:Q6ZN54 STRING:Q6ZN54
PhosphoSite:Q6ZN54 DMDM:239938619 PRIDE:Q6ZN54 DNASU:54849
Ensembl:ENST00000268676 Ensembl:ENST00000418391
Ensembl:ENST00000563594 Ensembl:ENST00000567874
Ensembl:ENST00000569453 Ensembl:ENST00000570182 GeneID:54849
KEGG:hsa:54849 UCSC:uc002fpl.3 UCSC:uc002fpn.2 UCSC:uc002fpp.2
GeneCards:GC16P090015 HGNC:HGNC:25969 neXtProt:NX_Q6ZN54
PharmGKB:PA162383526 InParanoid:Q6ZN54 PhylomeDB:Q6ZN54
ChiTaRS:DEF8 GenomeRNAi:54849 NextBio:57690 Bgee:Q6ZN54
CleanEx:HS_DEF8 Genevestigator:Q6ZN54 Uniprot:Q6ZN54
Length = 512
Score = 134 (52.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 23/60 (38%), Positives = 35/60 (58%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIRMRIRRDSM 59
C A+GF+CELC +V+FP+ S C C A FH C+ + C +C R+ +R+ S+
Sbjct: 444 CQAKGFVCELCREGDVLFPFD-SHTSVCADCSAVFHRDCYYDNSTTCPKCARLSLRKQSL 502
>UNIPROTKB|Q9NAH1 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891 HSSP:Q56366
GeneID:176544 KEGG:cel:CELE_Y47D3A.29 CTD:176544
RefSeq:NP_001255109.1 ProteinModelPortal:Q9NAH1 SMR:Q9NAH1
IntAct:Q9NAH1 MINT:MINT-6669806 STRING:Q9NAH1
EnsemblMetazoa:Y47D3A.29a UCSC:Y47D3A.29 WormBase:Y47D3A.29a
InParanoid:Q9NAH1 NextBio:893018 ArrayExpress:Q9NAH1 Uniprot:Q9NAH1
Length = 1428
Score = 142 (55.0 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 63/269 (23%), Positives = 130/269 (48%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
V+NEK L ++F+ + + +PD+++G+++ + L+ R L L SRI+ + KR
Sbjct: 598 VANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKL---PNWSRISRL-KR 652
Query: 412 NSSRDEV---KNTQLQMP-GRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWK 466
+ + ++ K+ Q ++ GR++++ V +S+ + +L ER +++ +
Sbjct: 653 SINIGKIGHSKSGQWELTAGRMMLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANE 712
Query: 467 LLTCWWEHRT--HLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ + + + L W + L +R++ +L+ + +++++ G +
Sbjct: 713 IPQLYVDSKDLISLINWSWNDLLLS-----LRIVVRLNALPLYIQISQIVGGIASRTMMG 767
Query: 525 GSQFRVESIMLRLSRLNNFVAV-----SPSIKQRAHM---------RAPESLPLILEPES 570
G R E ++L + +A S S K++ +A S L+LEP+
Sbjct: 768 GRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKK 827
Query: 571 RLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
LY I++LDF SLYPS+I YN C++T
Sbjct: 828 GLYETLILLLDFNSLYPSIIQEYNICYTT 856
Score = 47 (21.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 651 GILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
G+LP+ ++++++ R VK MK + +E+ + + M L
Sbjct: 877 GVLPREIRKLVECRRDVKSLMKSER-NEAKKKQMDIRQMAL 916
>WB|WBGene00012936 [details] [associations]
symbol:Y47D3A.29a species:6239 "Caenorhabditis elegans"
[GO:0006260 "DNA replication" evidence=IEA;ISS] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0035046 "pronuclear migration" evidence=IMP]
[GO:0008340 "determination of adult lifespan" evidence=IMP]
[GO:0005634 "nucleus" evidence=ISS] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0008340 GO:GO:0009792
GO:GO:0035046 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303
GO:GO:0003887 EMBL:AL117202 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 142 (55.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 63/269 (23%), Positives = 130/269 (48%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
V+NEK L ++F+ + + +PD+++G+++ + L+ R L L SRI+ + KR
Sbjct: 598 VANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKL---PNWSRISRL-KR 652
Query: 412 NSSRDEV---KNTQLQMP-GRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWK 466
+ + ++ K+ Q ++ GR++++ V +S+ + +L ER +++ +
Sbjct: 653 SINIGKIGHSKSGQWELTAGRMMLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANE 712
Query: 467 LLTCWWEHRT--HLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ + + + L W + L +R++ +L+ + +++++ G +
Sbjct: 713 IPQLYVDSKDLISLINWSWNDLLLS-----LRIVVRLNALPLYIQISQIVGGIASRTMMG 767
Query: 525 GSQFRVESIMLRLSRLNNFVAV-----SPSIKQRAHM---------RAPESLPLILEPES 570
G R E ++L + +A S S K++ +A S L+LEP+
Sbjct: 768 GRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKK 827
Query: 571 RLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
LY I++LDF SLYPS+I YN C++T
Sbjct: 828 GLYETLILLLDFNSLYPSIIQEYNICYTT 856
Score = 47 (21.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 651 GILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
G+LP+ ++++++ R VK MK + +E+ + + M L
Sbjct: 877 GVLPREIRKLVECRRDVKSLMKSER-NEAKKKQMDIRQMAL 916
>UNIPROTKB|C7IVS4 [details] [associations]
symbol:Y47D3A.29 "DNA polymerase" species:6239
"Caenorhabditis elegans" [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0006260 "DNA replication" evidence=IBA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0008340 GO:GO:0009792 GO:GO:0035046 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 EMBL:AL117202
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OMA:GSGTDME InterPro:IPR024647
Pfam:PF12254 TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
RefSeq:NP_001255108.1 ProteinModelPortal:C7IVS4 SMR:C7IVS4
STRING:C7IVS4 PaxDb:C7IVS4 EnsemblMetazoa:Y47D3A.29b GeneID:176544
KEGG:cel:CELE_Y47D3A.29 CTD:176544 WormBase:Y47D3A.29b
ArrayExpress:C7IVS4 Uniprot:C7IVS4
Length = 1456
Score = 142 (55.0 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 63/269 (23%), Positives = 130/269 (48%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKR 411
V+NEK L ++F+ + + +PD+++G+++ + L+ R L L SRI+ + KR
Sbjct: 598 VANEKALLTLFLAMINEDEPDMIVGHDLSA-TIALLVSRLEKLKL---PNWSRISRL-KR 652
Query: 412 NSSRDEV---KNTQLQMP-GRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWK 466
+ + ++ K+ Q ++ GR++++ V +S+ + +L ER +++ +
Sbjct: 653 SINIGKIGHSKSGQWELTAGRMMLDSKLAAMELVKSRSFDLTELSQQILGAERREIYANE 712
Query: 467 LLTCWWEHRT--HLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ + + + L W + L +R++ +L+ + +++++ G +
Sbjct: 713 IPQLYVDSKDLISLINWSWNDLLLS-----LRIVVRLNALPLYIQISQIVGGIASRTMMG 767
Query: 525 GSQFRVESIMLRLSRLNNFVAV-----SPSIKQRAHM---------RAPESLPLILEPES 570
G R E ++L + +A S S K++ +A S L+LEP+
Sbjct: 768 GRAERNEYLLLHAFEKADLIAPDKYNSSESKKKKEESQEGDEKKSGKAQYSGGLVLEPKK 827
Query: 571 RLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
LY I++LDF SLYPS+I YN C++T
Sbjct: 828 GLYETLILLLDFNSLYPSIIQEYNICYTT 856
Score = 47 (21.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 11/41 (26%), Positives = 24/41 (58%)
Query: 651 GILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSMLL 691
G+LP+ ++++++ R VK MK + +E+ + + M L
Sbjct: 877 GVLPREIRKLVECRRDVKSLMKSER-NEAKKKQMDIRQMAL 916
>UNIPROTKB|Q59J88 [details] [associations]
symbol:Q59J88 "DNA polymerase" species:8517 "Iguana iguana"
[GO:0000084 "S phase of mitotic cell cycle" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003682 "chromatin binding"
evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005635
"nuclear envelope" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=ISS] [GO:0006270 "DNA replication
initiation" evidence=ISS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=ISS] [GO:0006272 "leading
strand elongation" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006303 "double-strand break repair
via nonhomologous end joining" evidence=ISS] [GO:0008283 "cell
proliferation" evidence=ISS] [GO:0016363 "nuclear matrix"
evidence=ISS] [GO:0000731 "DNA synthesis involved in DNA repair"
evidence=ISS] [GO:0006281 "DNA repair" evidence=ISS] [GO:0000785
"chromatin" evidence=ISS] [GO:0003896 "DNA primase activity"
evidence=ISS] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0005635 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
GO:GO:0003677 GO:GO:0008283 GO:GO:0003682 GO:GO:0006270
GO:GO:0001882 SUPFAM:SSF53098 GO:GO:0016363 GO:GO:0000084
GO:GO:0006303 GO:GO:0003887 GO:GO:0006273 GO:GO:0006269
GO:GO:0006272 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
HOVERGEN:HBG080008 EMBL:AB178527 Uniprot:Q59J88
Length = 1441
Score = 106 (42.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 29/84 (34%), Positives = 44/84 (52%)
Query: 557 RAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVE---HLGVSDS- 612
+A S L+LEP+ Y I++LDF SLYPS+I +N CF+T + RV H D
Sbjct: 807 KAAYSGGLVLEPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT-VHRVSSSLHKNTEDGE 865
Query: 613 ------FPFGCIDLNVSIRSLKKL 630
P +D+ + + ++KL
Sbjct: 866 EEEIPELPDSSLDMGILPKEIRKL 889
Score = 84 (34.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 16/49 (32%), Positives = 28/49 (57%)
Query: 301 VRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
V+TK ++ + E+ L F+ V + DPD+++G+ I F LL+R
Sbjct: 574 VKTKNAKIEIATTERTLLGFFLAKVHKIDPDVIVGHNIYGFDLELLLQR 622
Score = 84 (34.6 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 41/212 (19%), Positives = 88/212 (41%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI--TEVEK 410
+ E+ L F+ V + DPD+++G+ I LL+R + ++ R+ + + K
Sbjct: 585 TTERTLLGFFLAKVHKIDPDVIVGHNIYGFDLELLLQRINFCKVPHWSKIGRLRRSNMPK 644
Query: 411 RNS-SRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLH-ERIPLHSWKLL 468
S KN GR++ ++ + + +SY ++ +L ERI + ++
Sbjct: 645 LGGRSGFAEKNATC---GRMICDVEISAKELIRCKSYHLTELVNQILKVERITVPPEEIR 701
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQF 528
+ + R LY VE+ I++++ L+ + ++ + G L G
Sbjct: 702 NMYSDPRQLLYM---VENTWTDAKYILQIMCDLNVLPLALQITNIAGNVMSRTLMGGRAE 758
Query: 529 RVESIMLRLSRLNNFVAVSPSIKQRAHMRAPE 560
R E ++L NF+ + ++ + E
Sbjct: 759 RNEYLLLHAFYEKNFIVPDKQLFKKTQKQLEE 790
>UNIPROTKB|A8IXV5 [details] [associations]
symbol:CHLREDRAFT_172920 "Predicted protein" species:3055
"Chlamydomonas reinhardtii" [GO:0000084 "S phase of mitotic cell
cycle" evidence=IBA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IBA] [GO:0005634 "nucleus" evidence=IBA]
[GO:0006287 "base-excision repair, gap-filling" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] [GO:0007346 "regulation of mitotic cell cycle"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0043137 "DNA replication, removal of RNA primer"
evidence=IBA] [GO:0043625 "delta DNA polymerase complex"
evidence=IBA] [GO:0045004 "DNA replication proofreading"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
Pfam:PF00136 PRINTS:PR00106 GO:GO:0007346 GO:GO:0000166
GO:GO:0003677 SUPFAM:SSF53098 GO:GO:0000084 GO:GO:0008408
GO:GO:0043137 GO:GO:0003887 GO:GO:0006297 eggNOG:COG0417
GO:GO:0045004 GO:GO:0006287 GO:GO:0043625 EMBL:DS496126
RefSeq:XP_001693242.1 EnsemblPlants:EDP03268 GeneID:5718970
KEGG:cre:CHLREDRAFT_172920 ProtClustDB:CLSN2921640 Uniprot:A8IXV5
Length = 350
Score = 129 (50.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 32/103 (31%), Positives = 54/103 (52%)
Query: 497 LIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHM 556
L+E+L + EMAR+ G+ +VL + S++ R + N++ V + + +
Sbjct: 104 LMERLATLPEMLEMARVTGLTLTQVLYNAQMIKTWSLLHRNAHRQNYI-VGGAREAGSLT 162
Query: 557 RAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
+P L I + LY P+ LDF SLYPS+ A+N C++T
Sbjct: 163 ESPYLLHPIENKTAGLYRGPVATLDFASLYPSLFRAHNLCYTT 205
Score = 44 (20.5 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 648 IRCGILPKMLQEILDTRLMVKQSMK 672
+R GILP +L ++ R + ++K
Sbjct: 212 VRLGILPTILAALMTARAATRAAIK 236
>UNIPROTKB|Q755Y6 [details] [associations]
symbol:AER381C "DNA polymerase" species:284811 "Ashbya
gossypii ATCC 10895" [GO:0000734 "gene conversion at mating-type
locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 EMBL:AE016818
GenomeReviews:AE016818_GR GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
RefSeq:NP_985237.1 ProteinModelPortal:Q755Y6 STRING:Q755Y6
EnsemblFungi:AAS53061 GeneID:4621453 KEGG:ago:AGOS_AER381C
PhylomeDB:Q755Y6 Uniprot:Q755Y6
Length = 1435
Score = 101 (40.6 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 17/36 (47%), Positives = 27/36 (75%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+ +P+ L+ + I+V+DF SLYPS+I +N CF+T
Sbjct: 822 LVFDPDKGLHKNYILVMDFNSLYPSIIQEFNICFTT 857
Score = 89 (36.4 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 76/361 (21%), Positives = 149/361 (41%)
Query: 232 NLNEV--TSHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGI 289
+ NE+ +SH ++ + I L P P E+K + + T +D K I
Sbjct: 471 DFNEIKNSSHCDSEVFISIPQNISPHQERL--PAP---ELKCVSLSVQTVMNVKDNKQEI 525
Query: 290 ILIGQ--ESELPEVRTKPIQMNFVSNEKELFSTFIENVR--QWDP--DILIGYEIETFSW 343
+ I ++LP+ PI+ N ++ T + V+ + P ++L E++
Sbjct: 526 VSISMCYYNDLPQ--DTPIEENLKPSD---IITLVRPVKGSSFPPGLNVLSRKELQ---- 576
Query: 344 GYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGL----NLN 399
G + R F ++EK L + F +++ DPD+LIG+ +E +S L R L + +
Sbjct: 577 GTV--RTF-NSEKVLLNCFCAMMKRSDPDVLIGHRLENISLDVLCHRALQLRIPTFSSFG 633
Query: 400 QELSRI--TEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFE-NIMYHVL 456
+ L R K N+S + + GR++ ++ + + + ++E MY V+
Sbjct: 634 RRLRRSWPERFGKNNASMAQFYIRDI-FSGRLLCDISNEMGQSLTPKCQSWELGEMYQVV 692
Query: 457 HERI--PLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLF 514
+R PL + + E L + + + + + ++ + T ++ L
Sbjct: 693 CQREYKPLEINFNDSRYHEDANFLV--LALREAITNSSFSAEIAFRIQILSLTKQLTNLA 750
Query: 515 GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYT 574
G + L R E I+L NN++ P K+ MR+ + P+ + T
Sbjct: 751 GNSWGHTLGGTRAGRNEFILLHEFYRNNYIL--PD-KESRQMRSARQQQNVDTPDGDVAT 807
Query: 575 D 575
D
Sbjct: 808 D 808
>UNIPROTKB|Q0D7U2 [details] [associations]
symbol:Os07g0209500 "Os07g0209500 protein" species:39947
"Oryza sativa Japonica Group" [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005694 "chromosome" evidence=IBA] [GO:0016035
"zeta DNA polymerase complex" evidence=IBA] [GO:0019985
"translesion synthesis" evidence=IBA] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=IBA]
[GO:0008408 "3'-5' exonuclease activity" evidence=IBA]
InterPro:IPR012337 GO:GO:0005634 GO:GO:0005694 GO:GO:0003676
SUPFAM:SSF53098 EMBL:AP008213 GO:GO:0003887 eggNOG:COG0417
GO:GO:0019985 GO:GO:0016035 RefSeq:NP_001059167.2 UniGene:Os.25087
GeneID:4342704 KEGG:osa:4342704 Gramene:Q0D7U2 Uniprot:Q0D7U2
Length = 107
Score = 109 (43.4 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 20/50 (40%), Positives = 33/50 (66%)
Query: 423 LQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWW 472
+ + GRI++NLWRL+R E+ L +Y+ E + VL ++PL K+L W+
Sbjct: 42 IHVDGRIILNLWRLMRAEIKLNNYSLEAVADEVLR-KVPLVPTKILNRWF 90
>UNIPROTKB|F8W648 [details] [associations]
symbol:PLEKHM1 "Pleckstrin homology domain-containing
family M member 1" species:9606 "Homo sapiens" [GO:0005543
"phospholipid binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR001849 InterPro:IPR002219 PROSITE:PS50003
PROSITE:PS50081 SMART:SM00109 SMART:SM00233 GO:GO:0005543
Gene3D:2.30.29.30 InterPro:IPR011993 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 InterPro:IPR025258 Pfam:PF13901 InterPro:IPR004012
Pfam:PF02759 SMART:SM00593 PROSITE:PS50826 EMBL:AC217778
HGNC:HGNC:29017 ChiTaRS:PLEKHM1 EMBL:AC091132 IPI:IPI00982243
SMR:F8W648 Ensembl:ENST00000421073 Ensembl:ENST00000548850
UCSC:uc010wjm.2 Uniprot:F8W648
Length = 967
Score = 136 (52.9 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CKRCIRMR 53
LC RGFIC++C ++IFP++ + RC +C FH C + + C RC R R
Sbjct: 904 LCTQRGFICQICQHHDIIFPFEFDTTVRCAECKTVFHQSCQAVVKKGCPRCARRR 958
>UNIPROTKB|I3LIH4 [details] [associations]
symbol:POLA1 "DNA polymerase" species:9823 "Sus scrofa"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR004578 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0003887 Gene3D:3.90.1600.10 InterPro:IPR023211
TIGRFAMs:TIGR00592 GeneTree:ENSGT00550000074891
Ensembl:ENSSSCT00000027952 OMA:ESHETTT Uniprot:I3LIH4
Length = 497
Score = 102 (41.0 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 20/48 (41%), Positives = 31/48 (64%)
Query: 552 QRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
++ +A S L+L+P+ Y I++LDF SLYPS+I +N CF+T
Sbjct: 143 KKGRKKAAYSGGLVLDPKVGFYDKFILLLDFNSLYPSIIQEFNICFTT 190
Score = 62 (26.9 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 645 DKSIRCGILPKMLQEILDTRLMVKQSMKE 673
D + GILP+ ++++++ R VKQ MK+
Sbjct: 215 DPGLEMGILPREIRKLVERRRQVKQLMKQ 243
Score = 56 (24.8 bits), Expect = 3.4e-05, Sum P(3) = 3.4e-05
Identities = 22/118 (18%), Positives = 49/118 (41%)
Query: 441 VNLQSYTFENIMYHVLH-ERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE 499
+ +SY ++ H+L ER+ + + + E LY +EH I++++
Sbjct: 13 IRCKSYHLSELVQHILKTERVVIPMENVRNMYSESSHLLY---LLEHTWKDAKFILQIMC 69
Query: 500 QLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMR 557
+L+ + ++ + G L G R E ++L NN++ I ++ +
Sbjct: 70 ELNVLPLALQITNIAGNIMSRTLMGGRSERNEFLLLHAFYENNYIVPDKQIFRKPQQK 127
>UNIPROTKB|Q9Y4G2 [details] [associations]
symbol:PLEKHM1 "Pleckstrin homology domain-containing
family M member 1" species:9606 "Homo sapiens" [GO:0005543
"phospholipid binding" evidence=IEA] [GO:0035556 "intracellular
signal transduction" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001849 InterPro:IPR002219 PROSITE:PS00479
PROSITE:PS50003 PROSITE:PS50081 SMART:SM00109 SMART:SM00233
GO:GO:0005737 GO:GO:0005543 Gene3D:2.30.29.30 InterPro:IPR011993
GO:GO:0035556 GO:GO:0046872 Orphanet:210110 InterPro:IPR025258
Pfam:PF13901 InterPro:IPR004012 Pfam:PF02759 SMART:SM00593
PROSITE:PS50826 HSSP:Q9D394 EMBL:AB002354 EMBL:BC064361
EMBL:AJ002220 EMBL:AK074103 EMBL:AL389948 IPI:IPI00000764
RefSeq:NP_055613.1 UniGene:Hs.514242 ProteinModelPortal:Q9Y4G2
SMR:Q9Y4G2 IntAct:Q9Y4G2 MINT:MINT-1400097 PhosphoSite:Q9Y4G2
DMDM:160419247 PRIDE:Q9Y4G2 Ensembl:ENST00000430334 GeneID:9842
KEGG:hsa:9842 UCSC:uc002ija.3 CTD:9842 GeneCards:GC17M043514
H-InvDB:HIX0014106 H-InvDB:HIX0174141 HGNC:HGNC:29017 HPA:HPA021558
HPA:HPA025018 MIM:611466 MIM:611497 neXtProt:NX_Q9Y4G2
PharmGKB:PA134906881 eggNOG:NOG288034 HOGENOM:HOG000247013
HOVERGEN:HBG056799 InParanoid:Q9Y4G2 OMA:PAFFKII ChiTaRS:PLEKHM1
GenomeRNAi:9842 NextBio:37086 ArrayExpress:Q9Y4G2 Bgee:Q9Y4G2
CleanEx:HS_PLEKHM1 Genevestigator:Q9Y4G2 Uniprot:Q9Y4G2
Length = 1056
Score = 136 (52.9 bits), Expect = 3.7e-05, P = 3.7e-05
Identities = 22/55 (40%), Positives = 32/55 (58%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CKRCIRMR 53
LC RGFIC++C ++IFP++ + RC +C FH C + + C RC R R
Sbjct: 993 LCTQRGFICQICQHHDIIFPFEFDTTVRCAECKTVFHQSCQAVVKKGCPRCARRR 1047
>UNIPROTKB|A8J9T2 [details] [associations]
symbol:POLA1 "DNA polymerase" species:3055 "Chlamydomonas
reinhardtii" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IBA] [GO:0005634 "nucleus" evidence=IBA] [GO:0005658
"alpha DNA polymerase:primase complex" evidence=IBA] [GO:0006260
"DNA replication" evidence=IBA] [GO:0006303 "double-strand break
repair via nonhomologous end joining" evidence=IBA] [GO:0008408
"3'-5' exonuclease activity" evidence=IBA] [GO:0019985 "translesion
synthesis" evidence=IBA] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 Pfam:PF00136 Pfam:PF03104 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 SUPFAM:SSF53098
GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 EMBL:DS496147
RefSeq:XP_001698708.1 ProteinModelPortal:A8J9T2
EnsemblPlants:EDO99390 GeneID:5724235 KEGG:cre:CHLREDRAFT_177262
BioCyc:CHLAMY:CHLREDRAFT_177262-MONOMER Uniprot:A8J9T2
Length = 1114
Score = 129 (50.5 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 34/105 (32%), Positives = 53/105 (50%)
Query: 501 LDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSP-SIKQRAHM--R 557
L + T +++ L G + L+ R+E ++L F+ S K +A
Sbjct: 536 LSVLPLTKQLSALSGQLWSRTLAGQRAGRIEMLLLHEFHSRKFIVPDKQSYKSKAAPSGN 595
Query: 558 APESLP-LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCL 601
P+ L+LEP+ LY +I+LDF SLYPS+I YN CF+T +
Sbjct: 596 GPKYAGGLVLEPKKGLYDKIVIILDFNSLYPSIIQEYNICFTTAI 640
Score = 57 (25.1 bits), Expect = 3.9e-05, Sum P(2) = 3.9e-05
Identities = 10/37 (27%), Positives = 20/37 (54%)
Query: 313 NEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
+E+ L + + ++ D D+L+G+ + F LL R
Sbjct: 377 SERSLLTCLLARLQSLDADVLVGHNVAAFDLTTLLSR 413
Score = 53 (23.7 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 12/56 (21%), Positives = 26/56 (46%)
Query: 354 NEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE 409
+E+ L + + ++ D D+L+G+ + LL R + L + R+ + E
Sbjct: 377 SERSLLTCLLARLQSLDADVLVGHNVAAFDLTTLLSRMQHHKVPLWSRIGRVKKTE 432
>UNIPROTKB|Q7SBT9 [details] [associations]
symbol:NCU07870 "DNA polymerase" species:367110 "Neurospora
crassa OR74A" [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IBA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase complex"
evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004578 InterPro:IPR006133
InterPro:IPR006134 InterPro:IPR006172 InterPro:IPR012337
InterPro:IPR015088 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
Pfam:PF08996 PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486
GO:GO:0000166 GO:GO:0003677 GO:GO:0006260 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0008408 GO:GO:0006303 GO:GO:0003887 KO:K02320
eggNOG:COG0417 GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592 OMA:CASIQGT
EMBL:AABX02000040 RefSeq:XP_963131.2 STRING:Q7SBT9
EnsemblFungi:EFNCRT00000007540 GeneID:3879279 KEGG:ncr:NCU07870
Uniprot:Q7SBT9
Length = 1479
Score = 112 (44.5 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+ EPE LY ++V+DF SLYPS+I YN CF+T
Sbjct: 854 LVFEPEKGLYDKFVLVMDFNSLYPSIIQEYNICFTT 889
Score = 67 (28.6 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 15/58 (25%), Positives = 31/58 (53%)
Query: 292 IGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLER 349
IG E+ L + R + + + E E+ + + + DPD+++G+++E + LL R
Sbjct: 602 IGFET-LAKERNRGV-LKLFKQEHEILNFLLAQIDVVDPDVILGHQLEGVDYSILLNR 657
Score = 65 (27.9 bits), Expect = 8.0e-05, Sum P(3) = 8.0e-05
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER 390
E E+ + + + DPD+++G+++E + + LL R
Sbjct: 622 EHEILNFLLAQIDVVDPDVILGHQLEGVDYSILLNR 657
Score = 55 (24.4 bits), Expect = 5.1e-05, Sum P(3) = 5.1e-05
Identities = 14/41 (34%), Positives = 21/41 (51%)
Query: 633 NLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
+L+ V V K GILPK++ ++ R VK MK+
Sbjct: 894 SLSEDDDAVPEVPKEQAQGILPKLIATLVSRRRQVKSLMKD 934
>DICTYBASE|DDB_G0295483 [details] [associations]
symbol:DDB_G0295483 "RUN domain-containing protein"
species:44689 "Dictyostelium discoideum" [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0003674 "molecular_function" evidence=ND]
dictyBase:DDB_G0295483 EMBL:AAFI02000181 InterPro:IPR025258
Pfam:PF13901 InterPro:IPR004012 Pfam:PF02759 SMART:SM00593
PROSITE:PS50826 RefSeq:XP_001733052.1 ProteinModelPortal:B0G190
STRING:B0G190 EnsemblProtists:DDB0235368 GeneID:8628288
KEGG:ddi:DDB_G0295483 OMA:WEDIALT Uniprot:B0G190
Length = 1398
Score = 136 (52.9 bits), Expect = 5.1e-05, P = 5.1e-05
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACF---HTKCHSQLPCKRCIRM-RIR 55
C +GFICE C+++E+IF W ++C CF H KC+S+ C +CIR+ R++
Sbjct: 1329 CKGKGFICEFCDNDELIFSWMSLDTQNYSKCDKCFTLSHKKCYSKDSCPKCIRISRVK 1386
>UNIPROTKB|H3BSH6 [details] [associations]
symbol:DEF8 "Differentially-expressed in FDCP 8 homolog"
species:9606 "Homo sapiens" [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001841 SMART:SM00184 GO:GO:0008270
EMBL:AC092143 InterPro:IPR025258 Pfam:PF13901 HGNC:HGNC:25969
ChiTaRS:DEF8 Ensembl:ENST00000561959 Bgee:H3BSH6 Uniprot:H3BSH6
Length = 176
Score = 118 (46.6 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 21/52 (40%), Positives = 29/52 (55%)
Query: 2 CLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCH--SQLPCKRCIR 51
C A+GF+CELC +V+FP+ S C C A FH C+ + C +C R
Sbjct: 126 CQAKGFVCELCREGDVLFPFD-SHTSVCADCSAVFHRDCYYDNSTTCPKCAR 176
>DICTYBASE|DDB_G0282191 [details] [associations]
symbol:polA1 "DNA polymerase alpha catalytic subunit"
species:44689 "Dictyostelium discoideum" [GO:0006260 "DNA
replication" evidence=IEA;IBA] [GO:0006139 "nucleobase-containing
compound metabolic process" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;IBA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0001882 "nucleoside binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA;ISS] [GO:0003896 "DNA
primase activity" evidence=ISS] [GO:0006273 "lagging strand
elongation" evidence=ISS] [GO:0006272 "leading strand elongation"
evidence=ISS] [GO:0006270 "DNA replication initiation"
evidence=ISS] [GO:0006269 "DNA replication, synthesis of RNA
primer" evidence=ISS] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=ISS;IBA] [GO:0000731 "DNA synthesis involved in
DNA repair" evidence=ISS] [GO:0006297 "nucleotide-excision repair,
DNA gap filling" evidence=IBA] [GO:0019985 "translesion synthesis"
evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0006303 "double-strand break repair via
nonhomologous end joining" evidence=IBA] [GO:0005634 "nucleus"
evidence=IEA;IBA] [GO:0051539 "4 iron, 4 sulfur cluster binding"
evidence=IEA] [GO:0051536 "iron-sulfur cluster binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0016779 "nucleotidyltransferase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 dictyBase:DDB_G0282191 GO:GO:0000166
GenomeReviews:CM000152_GR GO:GO:0046872 GO:GO:0003677 GO:GO:0051539
GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AAFI02000046
GO:GO:0008408 GO:GO:0006303 GO:GO:0000731 GO:GO:0003887 KO:K02320
GO:GO:0006273 GO:GO:0006269 GO:GO:0006272 eggNOG:COG0417
GO:GO:0019985 Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
TIGRFAMs:TIGR00592 OMA:CASIQGT RefSeq:XP_640277.1
ProteinModelPortal:Q54SV8 STRING:Q54SV8 EnsemblProtists:DDB0232274
GeneID:8623451 KEGG:ddi:DDB_G0282191 Uniprot:Q54SV8
Length = 1509
Score = 130 (50.8 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 62/266 (23%), Positives = 120/266 (45%)
Query: 353 SNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRN 412
++E+ L S F E V DPD+ G+ I +L+R L + E + I +++
Sbjct: 681 TSERNLLSFFCETVLNADPDVFAGHNIIGYDIEVILDRLEKLKV---MEWAFIGRLKR-- 735
Query: 413 SSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQ-SYTFENIMYHVLHERIPLHSWKLLTCW 471
SS D + + GR++ + + + + + + +Y+ + + L P ++ + +
Sbjct: 736 SSFDRFNH----ISGRLICDSYLVCKEFLPKEKNYSLVELSKNQLSINKPEINYLSIEPY 791
Query: 472 WEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVE 531
+E L ++ + + I LI +L T ++ L G Q+ + L R+E
Sbjct: 792 FETTKKLNIFIEINENDCYI--IFLLIFKLLVFPLTKQLTNLAGNQWDKSLKSNRAERIE 849
Query: 532 SIMLRLSRLNNFVAVSPSIKQRAHM------------RAPESLPLILEPESRLYTDPIIV 579
++L ++ + I Q++ A S L+L+P+ Y +++
Sbjct: 850 YLLLHNFHEKKYL-LPDKIYQKSSSSGGGGGAKDKDNHAAYSGGLVLDPKIDFYDRYVVL 908
Query: 580 LDFQSLYPSVIIAYNYCFSTCLGRVE 605
LDF SLYPS+I YN CF+T + RV+
Sbjct: 909 LDFNSLYPSIIQEYNVCFTT-INRVK 933
Score = 56 (24.8 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 12/29 (41%), Positives = 19/29 (65%)
Query: 647 SIRCGILPKMLQEILDTRLMVKQSMKEYK 675
SI GILPK+L ++ R +K+ M++ K
Sbjct: 948 SIEKGILPKVLHGLVSKRREIKKRMEQEK 976
>UNIPROTKB|Q9KSP4 [details] [associations]
symbol:VC_1212 "DNA polymerase" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 PRINTS:PR00106 PROSITE:PS00116
SMART:SM00486 GO:GO:0000166 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR SUPFAM:SSF53098
GO:GO:0003887 KO:K02336 OMA:VLDGIDW ProtClustDB:PRK05762
Gene3D:3.90.1600.10 InterPro:IPR023211 HSSP:P21189 PIR:E82227
RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4 DNASU:2614645
GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512 Uniprot:Q9KSP4
Length = 787
Score = 131 (51.2 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 56/249 (22%), Positives = 116/249 (46%)
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK 410
+V +E +L I Q+DPD++IG+ + + L +R L L + R +
Sbjct: 198 WVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHKRAEFHKLKLT--IGRAQQPSF 255
Query: 411 RNSSRDEVKNTQLQMPGRIVIN-LWRLLRHEVNLQSYTFENIMYHVLHERIPLHS----W 465
++ + + + +PGR+V++ + L + +S++ E++ +L E +H+
Sbjct: 256 FRTA-SQTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESVSQELLGEGKAIHNVHDRM 314
Query: 466 KLLTCWWEH-RTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ + H + L ++ + L V I LDF + +RL G++ +
Sbjct: 315 DEINQMFRHDKPSLARYNLQDCVL--VNKIFAATHLLDF---AIQRSRLTGVELDRIGGS 369
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 584
+ F L L +L+ V+P+++ + +P +++ LY D ++VLDF+S
Sbjct: 370 VAAFT----NLYLPQLHRAGYVAPNLQPENWVASPGGY--VMDSIPGLY-DSVLVLDFKS 422
Query: 585 LYPSVIIAY 593
LYPS+I ++
Sbjct: 423 LYPSIIRSF 431
>TIGR_CMR|VC_1212 [details] [associations]
symbol:VC_1212 "DNA polymerase II" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR
SUPFAM:SSF53098 GO:GO:0003887 KO:K02336 OMA:VLDGIDW
ProtClustDB:PRK05762 Gene3D:3.90.1600.10 InterPro:IPR023211
HSSP:P21189 PIR:E82227 RefSeq:NP_230857.1 ProteinModelPortal:Q9KSP4
DNASU:2614645 GeneID:2614645 KEGG:vch:VC1212 PATRIC:20081512
Uniprot:Q9KSP4
Length = 787
Score = 131 (51.2 bits), Expect = 8.9e-05, P = 8.9e-05
Identities = 56/249 (22%), Positives = 116/249 (46%)
Query: 351 FVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEK 410
+V +E +L I Q+DPD++IG+ + + L +R L L + R +
Sbjct: 198 WVEDEYQLLKALIAWFEQFDPDVIIGWSVVDFDFRLLHKRAEFHKLKLT--IGRAQQPSF 255
Query: 411 RNSSRDEVKNTQLQMPGRIVIN-LWRLLRHEVNLQSYTFENIMYHVLHERIPLHS----W 465
++ + + + +PGR+V++ + L + +S++ E++ +L E +H+
Sbjct: 256 FRTA-SQTQQGFISIPGRVVLDGIDTLKTATYHFRSWSLESVSQELLGEGKAIHNVHDRM 314
Query: 466 KLLTCWWEH-RTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSR 524
+ + H + L ++ + L V I LDF + +RL G++ +
Sbjct: 315 DEINQMFRHDKPSLARYNLQDCVL--VNKIFAATHLLDF---AIQRSRLTGVELDRIGGS 369
Query: 525 GSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQS 584
+ F L L +L+ V+P+++ + +P +++ LY D ++VLDF+S
Sbjct: 370 VAAFT----NLYLPQLHRAGYVAPNLQPENWVASPGGY--VMDSIPGLY-DSVLVLDFKS 422
Query: 585 LYPSVIIAY 593
LYPS+I ++
Sbjct: 423 LYPSIIRSF 431
>ASPGD|ASPL0000000737 [details] [associations]
symbol:AN10755 species:162425 "Emericella nidulans"
[GO:0033314 "mitotic DNA replication checkpoint" evidence=IEA]
[GO:0006269 "DNA replication, synthesis of RNA primer"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0000734 "gene conversion at mating-type locus,
DNA repair synthesis" evidence=IEA] [GO:0000723 "telomere
maintenance" evidence=IEA] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0003688 "DNA replication origin
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0001882 "nucleoside binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR004578 InterPro:IPR006133 InterPro:IPR006134
InterPro:IPR006172 InterPro:IPR012337 InterPro:IPR015088
InterPro:IPR017964 Pfam:PF00136 Pfam:PF03104 Pfam:PF08996
PRINTS:PR00106 PROSITE:PS00116 SMART:SM00486 GO:GO:0000166
GO:GO:0003677 GO:GO:0006260 EMBL:BN001301 GO:GO:0001882
SUPFAM:SSF53098 GO:GO:0003887 Gene3D:3.90.1600.10
InterPro:IPR023211 OMA:GSGTDME InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EnsemblFungi:CADANIAT00007097 Uniprot:C8V3I8
Length = 1459
Score = 111 (44.1 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+ EPE LY ++V+DF SLYPS+I YN CF+T
Sbjct: 844 LVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTT 879
Score = 69 (29.3 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 345 YLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER 390
Y+LE+ +E+ L S F+ + DPD+L+G++++ + LL R
Sbjct: 607 YMLEK----SEQMLLSKFLALFERMDPDVLMGHQLQEVDLSILLSR 648
Score = 67 (28.6 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 278 TCPPEE-DRKVGIILIGQESELP-----EVRTKPIQMNFVSNEKELFSTFIENVRQWDPD 331
T PPE+ K ++ S P E+R + +E+ L S F+ + DPD
Sbjct: 571 TTPPEKLPCKTFTVMRPAGSSYPVNFEAEIRKQRGTYMLEKSEQMLLSKFLALFERMDPD 630
Query: 332 ILIGYEIETFSWGYLLER 349
+L+G++++ LL R
Sbjct: 631 VLMGHQLQEVDLSILLSR 648
Score = 47 (21.6 bits), Expect = 0.00024, Sum P(3) = 0.00024
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 651 GILPKMLQEILDTRLMVKQSMKE 673
GILP+++ ++ R VK+ MK+
Sbjct: 905 GILPRLIATLVGRRREVKKLMKD 927
>UNIPROTKB|Q5B0J8 [details] [associations]
symbol:AN5932.2 "DNA polymerase" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000734 "gene conversion at
mating-type locus, DNA repair synthesis" evidence=IBA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IBA] [GO:0005634
"nucleus" evidence=IBA] [GO:0005658 "alpha DNA polymerase:primase
complex" evidence=IBA] [GO:0006260 "DNA replication" evidence=IBA]
[GO:0006303 "double-strand break repair via nonhomologous end
joining" evidence=IBA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IBA] [GO:0019985 "translesion synthesis" evidence=IBA]
[GO:0006297 "nucleotide-excision repair, DNA gap filling"
evidence=IBA] InterPro:IPR004399 InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 GO:GO:0001882 SUPFAM:SSF53098 EMBL:AACD01000101
GO:GO:0009228 GO:GO:0008408 GO:GO:0006303 InterPro:IPR013749
Pfam:PF08543 GO:GO:0003887 KO:K02320 eggNOG:COG0417 GO:GO:0019985
Gene3D:3.90.1600.10 InterPro:IPR023211 GO:GO:0005658
HOGENOM:HOG000163524 OrthoDB:EOG4K0TWK GO:GO:0000734
InterPro:IPR024647 Pfam:PF12254 TIGRFAMs:TIGR00592
Gene3D:1.20.910.10 InterPro:IPR016084 SUPFAM:SSF48613
InterPro:IPR004305 Pfam:PF03070 GO:GO:0008972 TIGRFAMs:TIGR00097
RefSeq:XP_663536.1 ProteinModelPortal:Q5B0J8 STRING:Q5B0J8
GeneID:2871177 KEGG:ani:AN5932.2 Uniprot:Q5B0J8
Length = 2019
Score = 111 (44.1 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 20/36 (55%), Positives = 26/36 (72%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFST 599
L+ EPE LY ++V+DF SLYPS+I YN CF+T
Sbjct: 844 LVFEPERGLYDRYVLVMDFNSLYPSIIQEYNICFTT 879
Score = 69 (29.3 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 15/46 (32%), Positives = 28/46 (60%)
Query: 345 YLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLER 390
Y+LE+ +E+ L S F+ + DPD+L+G++++ + LL R
Sbjct: 607 YMLEK----SEQMLLSKFLALFERMDPDVLMGHQLQEVDLSILLSR 648
Score = 67 (28.6 bits), Expect = 0.00081, Sum P(3) = 0.00081
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 278 TCPPEE-DRKVGIILIGQESELP-----EVRTKPIQMNFVSNEKELFSTFIENVRQWDPD 331
T PPE+ K ++ S P E+R + +E+ L S F+ + DPD
Sbjct: 571 TTPPEKLPCKTFTVMRPAGSSYPVNFEAEIRKQRGTYMLEKSEQMLLSKFLALFERMDPD 630
Query: 332 ILIGYEIETFSWGYLLER 349
+L+G++++ LL R
Sbjct: 631 VLMGHQLQEVDLSILLSR 648
Score = 48 (22.0 bits), Expect = 0.00052, Sum P(3) = 0.00052
Identities = 15/47 (31%), Positives = 24/47 (51%)
Query: 608 GVSDSFPFGCIDL-NVSIRSLKKLQ-QNLTISPSGVAFVDKSIRCGI 652
G SD+ C DL + + L Q++ + P+ FV+K IR G+
Sbjct: 1509 GESDNLSGKCFDLATTGLTAQNTLGVQDIFVVPAD--FVEKQIRAGL 1553
Score = 47 (21.6 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 651 GILPKMLQEILDTRLMVKQSMKE 673
GILP+++ ++ R VK+ MK+
Sbjct: 905 GILPRLIATLVGRRREVKKLMKD 927
>UNIPROTKB|Q69YJ1 [details] [associations]
symbol:PLEKHM1P "Putative pleckstrin homology
domain-containing family M member 1P" species:9606 "Homo sapiens"
[GO:0005543 "phospholipid binding" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] InterPro:IPR001849
InterPro:IPR002219 PROSITE:PS00479 PROSITE:PS50003 PROSITE:PS50081
SMART:SM00109 SMART:SM00233 GO:GO:0005543 Gene3D:2.30.29.30
InterPro:IPR011993 GO:GO:0035556 GO:GO:0046872 GO:GO:0005622
InterPro:IPR025258 Pfam:PF13901 eggNOG:NOG283042
HOGENOM:HOG000247013 OrthoDB:EOG47SSD4 EMBL:AL833315
IPI:IPI00740891 UniGene:Hs.646585 ProteinModelPortal:Q69YJ1
SMR:Q69YJ1 PhosphoSite:Q69YJ1 DMDM:74748328 PRIDE:Q69YJ1
UCSC:uc002ijc.3 GeneCards:GC17M062780 HGNC:HGNC:35411
neXtProt:NX_Q69YJ1 InParanoid:Q69YJ1 Genevestigator:Q69YJ1
Uniprot:Q69YJ1
Length = 520
Score = 121 (47.7 bits), Expect = 0.00061, P = 0.00061
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CKRCIR 51
LC R FIC++C ++IFP + + RC +C FH C + + C RC R
Sbjct: 468 LCTQRSFICQICQHHDIIFPSEFDTTVRCAKCKTVFHQSCQAVVKKGCPRCAR 520
>SGD|S000005046 [details] [associations]
symbol:POL1 "Catalytic subunit of the DNA polymerase I
alpha-primase complex" species:4932 "Saccharomyces cerevisiae"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0001882
"nucleoside binding" evidence=IEA] [GO:0000731 "DNA synthesis
involved in DNA repair" evidence=IMP] [GO:0006270 "DNA replication
initiation" evidence=IC] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA;IDA] [GO:0006278 "RNA-dependent DNA
replication" evidence=IDA] [GO:0016779 "nucleotidyltransferase
activity" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA;IMP]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0000076
"DNA replication checkpoint" evidence=IBA] [GO:0000084 "S phase of
mitotic cell cycle" evidence=IBA] [GO:0006269 "DNA replication,
synthesis of RNA primer" evidence=IBA] [GO:0000734 "gene conversion
at mating-type locus, DNA repair synthesis" evidence=IBA]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=IBA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0006139 "nucleobase-containing compound metabolic process"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0051536 "iron-sulfur cluster binding" evidence=IEA] [GO:0051539
"4 iron, 4 sulfur cluster binding" evidence=IEA] [GO:0005657
"replication fork" evidence=IDA] [GO:0006279 "premeiotic DNA
replication" evidence=IMP] [GO:0005658 "alpha DNA
polymerase:primase complex" evidence=IDA] [GO:0006273 "lagging
strand elongation" evidence=IC] InterPro:IPR004578
InterPro:IPR006133 InterPro:IPR006134 InterPro:IPR006172
InterPro:IPR012337 InterPro:IPR015088 InterPro:IPR017964
Pfam:PF00136 Pfam:PF03104 Pfam:PF08996 PRINTS:PR00106
PROSITE:PS00116 SMART:SM00486 SGD:S000005046 GO:GO:0005739
GO:GO:0000166 GO:GO:0046872 GO:GO:0003677 EMBL:BK006947
GO:GO:0051539 GO:GO:0006270 GO:GO:0001882 SUPFAM:SSF53098
GO:GO:0006278 EMBL:Z50161 GO:GO:0000084 GO:GO:0000076 PDB:3OIQ
PDBsum:3OIQ GO:GO:0006279 GO:GO:0003887 RefSeq:NP_014297.3
GeneID:855621 KEGG:sce:YNL102W KO:K02320 GO:GO:0006273
GO:GO:0006269 eggNOG:COG0417 Gene3D:3.90.1600.10 InterPro:IPR023211
GO:GO:0005658 PDB:3FLO PDBsum:3FLO HOGENOM:HOG000163524
OrthoDB:EOG4K0TWK GO:GO:0000734 InterPro:IPR024647 Pfam:PF12254
TIGRFAMs:TIGR00592 EMBL:J03268 EMBL:Z71378 EMBL:Z12126 PIR:S58250
RefSeq:NP_014303.3 ProteinModelPortal:P13382 SMR:P13382
DIP:DIP-2526N IntAct:P13382 MINT:MINT-421899 STRING:P13382
PaxDb:P13382 PeptideAtlas:P13382 PRIDE:P13382 EnsemblFungi:YNL102W
GeneID:855628 KEGG:sce:YNL096C CYGD:YNL102w
GeneTree:ENSGT00550000074891 KO:K02993 OMA:CASIQGT
EvolutionaryTrace:P13382 NextBio:979813 ArrayExpress:P13382
Genevestigator:P13382 GermOnline:YNL102W Uniprot:P13382
Length = 1468
Score = 115 (45.5 bits), Expect = 0.00092, Sum P(3) = 0.00091
Identities = 26/67 (38%), Positives = 37/67 (55%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVS 623
L+ EPE L+ + ++V+DF SLYPS+I +N CF+T E + S P +D V
Sbjct: 847 LVFEPEKGLHKNYVLVMDFNSLYPSIIQEFNICFTTVDRNKEDIDELPSVPPSEVDQGVL 906
Query: 624 IRSLKKL 630
R L L
Sbjct: 907 PRLLANL 913
Score = 68 (29.0 bits), Expect = 0.00092, Sum P(3) = 0.00091
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 305 PIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIE 364
P ++ +NEK + S F ++ DPD++IG+ ++ L R N SI
Sbjct: 607 PGRVRLFNNEKAMLSCFCAMLKVEDPDVIIGHRLQNVYLDVLAHRMHDLNIPTFSSIGRR 666
Query: 365 NVRQW 369
R W
Sbjct: 667 LRRTW 671
Score = 38 (18.4 bits), Expect = 0.00092, Sum P(3) = 0.00091
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 44 LPCKRCIRMRIR-----RDSMKGIVDV--KCFEESSLE----RSMKPDDRPSPTRKNKST 92
+P RC+ + I+ +++ + IV + + SL+ ++KPDD + R +ST
Sbjct: 533 MPNLRCLSLSIQTLMNPKENKQEIVSITLSAYRNISLDSPIPENIKPDDLCTLVRPPQST 592
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.138 0.424 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 696 679 0.00079 121 3 11 22 0.49 33
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 122
No. of states in DFA: 619 (66 KB)
Total size of DFA: 389 KB (2189 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 63.42u 0.12s 63.54t Elapsed: 00:00:57
Total cpu time: 63.45u 0.12s 63.57t Elapsed: 00:00:59
Start: Thu Aug 15 12:17:18 2013 End: Thu Aug 15 12:18:17 2013
WARNINGS ISSUED: 1