RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy5925
(696 letters)
>3iay_A DNA polymerase delta catalytic subunit; protein-DNA complex, DNA
replication, DNA-BI DNA-directed DNA polymerase,
exonuclease, hydrolase; HET: DNA DOC DCP; 2.00A
{Saccharomyces cerevisiae}
Length = 919
Score = 297 bits (761), Expect = 4e-89
Identities = 97/439 (22%), Positives = 177/439 (40%), Gaps = 60/439 (13%)
Query: 245 LTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTK 304
L +++ +I R + P+P YD V I + ++ + + S +
Sbjct: 249 LRIMSFDIECAGRIGVFPEPEYDPVIQIANVVSIAGAKKPFIRNVFTLNTCSPITGS--- 305
Query: 305 PIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIE 364
+ + E+E+ S + + + DPD++IGY F YLL R
Sbjct: 306 --MIFSHATEEEMLSNWRNFIIKVDPDVIIGYNTTNFDIPYLLNR-----------AKAL 352
Query: 365 NVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQ 424
V + G L I E + + + +
Sbjct: 353 KVNDFP---YFGR--------------------LKTVKQEIKESVFSSKAYGTRETKNVN 389
Query: 425 MPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTV 484
+ GR+ ++L + ++ E L+SYT + H L E+ + +++ + +
Sbjct: 390 IDGRLQLDLLQFIQREYKLRSYTLNAVSAHFLGEQKEDVHYSIISDLQNGDSET-RRRLA 448
Query: 485 EHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFV 544
+ L +RL+E+L + +EMAR+ G+ F +L+RG Q +V S + R + V
Sbjct: 449 VYCLKDAYLPLRLMEKLMALVNYTEMARVTGVPFSYLLARGQQIKVVSQLFRKCLEIDTV 508
Query: 545 AVSPSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRV 604
P+++ +A E ++EP Y PI LDF SLYPS+++A+N C++T +
Sbjct: 509 I--PNMQSQASDDQYEG-ATVIEPIRGYYDVPIATLDFNSLYPSIMMAHNLCYTTLCNKA 565
Query: 605 EHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTR 664
R K+ ++ I+P+G FV R GILP +L E++ R
Sbjct: 566 T-----------------VERLNLKIDEDYVITPNGDYFVTTKRRRGILPIILDELISAR 608
Query: 665 LMVKQSMKEYKFSESLRNL 683
K+ +++ K L
Sbjct: 609 KRAKKDLRDEKDPFKRDVL 627
Score = 60.7 bits (147), Expect = 1e-09
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 6/76 (7%)
Query: 70 ESSLERSMKPDDRPSPTRKNKSTRSSFDSD--MFPSSSSRDRLYTDPIIVLDFQSLYPSV 127
S L R D P +++++ ++ + P Y PI LDF SLYPS+
Sbjct: 495 VSQLFRKCLEIDTVIPNMQSQASDDQYEGATVIEPIR----GYYDVPIATLDFNSLYPSI 550
Query: 128 IIAYNYCFSTCLGRVE 143
++A+N C++T +
Sbjct: 551 MMAHNLCYTTLCNKAT 566
>1qht_A Protein (DNA polymerase); archaea, hyperthermostable, family B
polymer alpha family polymerase, transferase; 2.10A
{Thermococcus SP} SCOP: c.55.3.5 e.8.1.1 PDB: 1tgo_A
2xhb_A* 2vwj_A* 2vwk_A* 1wns_A* 1wn7_A 1qqc_A* 4ahc_A*
4ail_C* 3a2f_A* 2jgu_A* 1d5a_A
Length = 775
Score = 273 bits (701), Expect = 1e-81
Identities = 83/335 (24%), Positives = 139/335 (41%), Gaps = 38/335 (11%)
Query: 350 HFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE 409
VS EKE+ F+ VR+ DPD+LI Y + + YL +R LG+ L R
Sbjct: 182 DVVSTEKEMIKRFLRVVREKDPDVLITYNGDNFDFAYLKKRCEELGIKFT--LGRDGSEP 239
Query: 410 KRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLT 469
K D +++ GRI +L+ ++R +NL +YT E + V + + +
Sbjct: 240 KIQRMGD---RFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAVFGKPKEKVYAEEIA 296
Query: 470 CWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFR 529
WE L + + + L + ++++RL G ++V +
Sbjct: 297 QAWESGEGLER--VARYSMEDAKVTYELGREF--FPMEAQLSRLIGQSLWDVSRSSTGNL 352
Query: 530 VESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPS 588
VE +LR + N +A + P ++ A R + + EPE L+ D I+ LDF+SLYPS
Sbjct: 353 VEWFLLRKAYKRNELAPNKPDERELARRRGGYAGGYVKEPERGLW-DNIVYLDFRSLYPS 411
Query: 589 VIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSI 648
+II +N T GC + +V+ G F
Sbjct: 412 IIITHNVSPDTLN------------REGCKEYDVA-------------PEVGHKFCKD-- 444
Query: 649 RCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNL 683
G +P +L ++L+ R +K+ MK + L
Sbjct: 445 FPGFIPSLLGDLLEERQKIKRKMKATVDPLEKKLL 479
Score = 62.8 bits (153), Expect = 2e-10
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCL 139
L+ D I+ LDF+SLYPS+II +N T
Sbjct: 396 LW-DNIVYLDFRSLYPSIIITHNVSPDTLN 424
>2gv9_A DNA polymerase; polymerase alpha fold, transferase; HET: DNA; 2.68A
{Human herpesvirus 1} PDB: 1dml_B*
Length = 1193
Score = 248 bits (635), Expect = 1e-70
Identities = 68/373 (18%), Positives = 137/373 (36%), Gaps = 65/373 (17%)
Query: 352 VSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRI----TE 407
+E E+ F+ V+Q+ P+ + GY I W +LL + + R+
Sbjct: 398 FDSEFEMLLAFMTLVKQYGPEFVTGYNIINFDWPFLLAKLTDIYKVPLDGYGRMNGRGVF 457
Query: 408 VEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKL 467
K +++++ G + I+++ ++ ++ L SY + VL ++ S++
Sbjct: 458 RVWDIGQSHFQKRSKIKVNGMVNIDMYGIITDKIKLSSYKLNAVAEAVLKDKKKDLSYRD 517
Query: 468 LTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 527
+ ++ + + E+ + + +L + S +ARL GI + G Q
Sbjct: 518 IPAYYATGPAQ-RGVIGEYCIQDSLLVGQLFFKFLPHLELSAVARLAGINITRTIYDGQQ 576
Query: 528 FRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP------------------------ 563
RV + +LRL+ F+ + R P
Sbjct: 577 IRVFTCLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGG 636
Query: 564 ---------------------LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLG 602
+L+P S + +P++V DF SLYPS+I A+N CFST
Sbjct: 637 GEREPEGARETAGRHVGYQGAKVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSL 696
Query: 603 RVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILD 662
R + + + K + + + FV +R +L +L++ L
Sbjct: 697 RADAVAHLE---------------AGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLA 741
Query: 663 TRLMVKQSMKEYK 675
R ++ + +
Sbjct: 742 MRKQIRSRIPQSS 754
Score = 63.3 bits (153), Expect = 2e-10
Identities = 32/178 (17%), Positives = 55/178 (30%), Gaps = 25/178 (14%)
Query: 35 CFHTKCHSQ---LPCKRCIRMRIRRDSMKGIVDVKCFEESSLERSMKPDDR------PSP 85
C + LP + ++ K + EE E D+R P
Sbjct: 582 CLLRLADQKGFILPDTQGRFRGAGGEAPKRPAAAREDEERPEEEGEDEDEREEGGGEREP 641
Query: 86 TRKNKSTRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHL 145
++ + +P++V DF SLYPS+I A+N CFST R +
Sbjct: 642 EGARETAGRHVGYQGAKVLDPTSGFHVNPVVVFDFASLYPSIIQAHNLCFSTLSLRAD-- 699
Query: 146 GVSDSFPFGCIASRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFI--RKQ 201
+ ++ + I + L + ++ RKQ
Sbjct: 700 ------------AVAHLEAGKDYLEIEVGGRRLFFVKAHVRESLLSILLRDWLAMRKQ 745
>3k59_A POL II, DNA polymerase II; protein-DNA complex, DNA damage, DNA
repair, DNA-binding; HET: DNA DOC DCP; 1.92A
{Escherichia coli} PDB: 3k57_A* 3k58_A* 3k5l_A* 3k5m_A*
3k5n_A* 3k5o_A* 3maq_A* 1q8i_A*
Length = 786
Score = 228 bits (582), Expect = 1e-64
Identities = 68/417 (16%), Positives = 137/417 (32%), Gaps = 47/417 (11%)
Query: 277 YTCPPEEDRKVGIILIGQESELPEVRTKPIQMNF---VSNEKELFSTFIENVRQWDPDIL 333
V L P ++ ++ + EL+ +E Q +
Sbjct: 129 VEGDMHNGTIVNARLKPHPDYRPPLKW----VSIDIETTRHGELYCIGLEGCGQ-RIVYM 183
Query: 334 IGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYV 393
+G + E +V++ +L +DPD++IG+ + L +
Sbjct: 184 LG-PENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAER 242
Query: 394 LGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE-VNLQSYTFENIM 452
L L L R + + Q GR++I+ L+ N S++ E +
Sbjct: 243 YRLPL--RLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVA 300
Query: 453 YHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMAR 512
+L E + + + R K + L + ++ + + + E A
Sbjct: 301 QELLGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKNCELVTQIFHKTEIMPFLLERAT 360
Query: 513 LFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEPESRL 572
+ G+ GS + +VA P++ + +P +++ L
Sbjct: 361 VNGLPVDRH--GGSVAAFGHLYFPRMHRAGYVA--PNLGEVPPHASP--GGYVMDSRPGL 414
Query: 573 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQ 632
Y D ++VLD++SLYPS+I + + Q
Sbjct: 415 Y-DSVLVLDYKSLYPSIIRTFLIDPVGLV-------------------------EGMAQP 448
Query: 633 NLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSM 689
+ S G S LP+++ I R K+ + S++L+ + M N+
Sbjct: 449 DPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNK-PLSQALK-IIM-NAF 502
Score = 55.5 bits (134), Expect = 4e-08
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 110 LYTDPIIVLDFQSLYPSVIIAYNYCFSTCL 139
LY D ++VLD++SLYPS+I + +
Sbjct: 414 LY-DSVLVLDYKSLYPSIIRTFLIDPVGLV 442
>1s5j_A DNA polymerase I; replication, disulfide bonds, transferase; HET:
DNA; 2.40A {Sulfolobus solfataricus} SCOP: c.55.3.5
e.8.1.1
Length = 847
Score = 134 bits (340), Expect = 5e-33
Identities = 43/340 (12%), Positives = 100/340 (29%), Gaps = 55/340 (16%)
Query: 350 HFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVE 409
+ E EL F + + + I++ + + Y+ R LG + +
Sbjct: 252 ERFNTEYELLGRFFDILL--EYPIVLTFNGDDFDLPYIYFRALKLGYFPEEIPIDV---- 305
Query: 410 KRNSSRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHE-RIPLHSWKLL 468
+ + + R E Y + + +L ++ + +
Sbjct: 306 AGKDEAKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAVAKALLGTSKVKVDTLI-- 363
Query: 469 TCWWEHRTHLYKWMTVEHYLIRVTGIIRLIE--QLDFIGRTSEMARLFGIQFYEVLSRGS 526
+ L +E+ ++L + +R+ + E+
Sbjct: 364 --SFLDVEKL-----IEYNFRDAEITLQLTTFNNDLTMKLIVLFSRISRLGIEELTRTEI 416
Query: 527 QFRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLP-----------LILEPESRLYTD 575
V+++ R N++ P ++ + ++++P + ++
Sbjct: 417 STWVKNLYYWEHRKRNWLI--PLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIF-F 473
Query: 576 PIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLT 635
I VLDF SLYPS+I +N + T K +
Sbjct: 474 NITVLDFASLYPSIIRTWNLSYETV-----------------------DIQQCKKPYEVK 510
Query: 636 ISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
V + R GI + + D R+ + + +
Sbjct: 511 DETGEVLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNP 550
Score = 52.6 bits (126), Expect = 3e-07
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 113 DPIIVLDFQSLYPSVIIAYNYCFST 137
I VLDF SLYPS+I +N + T
Sbjct: 473 FNITVLDFASLYPSIIRTWNLSYET 497
>3qex_A DNA polymerase, GP43; difluorotoluene nucleoside; HET: DNA DOC DGT;
1.73A {Enterobacteria phage RB69} PDB: 3qei_A* 3qer_A*
3qes_A* 3qet_A* 3qep_A* 3qew_A* 3qev_A* 3s9h_A* 3sq0_A*
3spz_A* 3ne6_A* 3nhg_A* 3si6_A* 3scx_A* 3sjj_A* 3snn_A*
3ngi_A* 3lzi_A* 3lzj_A* 3ndk_A* ...
Length = 903
Score = 76.1 bits (186), Expect = 2e-14
Identities = 65/362 (17%), Positives = 126/362 (34%), Gaps = 34/362 (9%)
Query: 323 ENVRQWDPDILIGYEIETFSWGYLLERHFV-----SNEKELFSIFIENVRQWDPDILIGY 377
NV +W +I + + + NEKEL ++ +Q P IL G+
Sbjct: 157 GNVEEWSIEIAAKLQEQGGDEVPSEIIDKIIYMPFDNEKELLMEYLNFWQQKTPVILTGW 216
Query: 378 EIETLSWGYLLER-GYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRL 436
+E+ + Y+ R + G + + LS + + + + G V++ L
Sbjct: 217 NVESFAIPYVYNRIKNIFGESTAKRLSPHRKTRVKVIENMYGSREIITLFGISVLDYIDL 276
Query: 437 LR--HEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIR-VTG 493
+ N SY+ + I L+ + + + Y I V
Sbjct: 277 YKKFSFTNQPSYSLDYISEFELNVGKLKYDGPISKLRESN------HQRYISYNIIAVYR 330
Query: 494 IIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSPSIKQR 553
++++ + FI + +M IQ V S ++I+ + N V P +
Sbjct: 331 VLQIDAKRQFINLSLDMGYYAKIQIQSVFSPIKT--WDAIIFNSLKEQNKVI--PQGRSH 386
Query: 554 AHMRAPESLPLILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSF 613
P + + EP Y ++ D SLYPS+I N T G + + D
Sbjct: 387 PVQPYPGAF--VKEPIPNRY-KYVMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYI 443
Query: 614 PFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKE 673
++ + SP+G+ + G++P + ++ + R K M
Sbjct: 444 ----------NAVAERPSDVYSCSPNGMMYYKDRD--GVVPTEITKVFNQRKEHKGYMLA 491
Query: 674 YK 675
+
Sbjct: 492 AQ 493
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 73.0 bits (178), Expect = 2e-13
Identities = 88/585 (15%), Positives = 168/585 (28%), Gaps = 153/585 (26%)
Query: 65 VKCFEESSLER---------SMKPDDRPSPTRKNKSTRSSF--DSDMFPSSS-SRDRLYT 112
V+ F E L + TR R D+ +F + SR + Y
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYL 138
Query: 113 DPIIVLDFQSLYPS--VIIAYNY----CFSTCLGR--VEHLGVSDSFPF-------GCIA 157
L L P+ V+I T + V F
Sbjct: 139 KLRQAL--LELRPAKNVLI---DGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCN 193
Query: 158 SRESNQSPPNKDSIHEAEITHPDCSKSSQIDFNPDLFKSFIRKQLETPKRRIC------- 210
S E+ K SS I ++ +R+ L++ C
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 211 -DSYAIDAMTPD-----TTGDYQMGLDNLNEVTSHVENYYLTVLAVEIHAISRALLKPDP 264
++ A +A TT Q VT + T ++++ H S L
Sbjct: 254 QNAKAWNAFNLSCKILLTTRFKQ--------VTDFLSAATTTHISLDHH--SMTLTP--- 300
Query: 265 AYDEVKAIFY-YLYTCP---PEEDRKVG---IILIGQESELPEVRTKPIQMNFVSNEKEL 317
DEVK++ YL P P E + +I + + +
Sbjct: 301 --DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTI 358
Query: 318 FSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGY 377
+ + + +P + F + S+F + I
Sbjct: 359 IESSLNVL---EPA--------------EYRKMF-----DRLSVFPPSA-----HI---- 387
Query: 378 EIETLS--WGYLLERGYVLGLNLNQELSRITEVEKRNSSR--------DEVKNTQLQMPG 427
LS W +++ + + +N +L + + VEK+ E+K
Sbjct: 388 PTILLSLIWFDVIK--SDVMVVVN-KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Query: 428 --RIVINLWRLLRH-------EVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHL 478
R +++ + + + L Y + +I +H L L + L
Sbjct: 445 LHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHH-LKNIEHPERMTLFRMVF-----L 498
Query: 479 -YKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYE--------VLSRGSQFR 529
++++ + IR + S + L ++FY+ R
Sbjct: 499 DFRFLEQK---IRHDS-------TAWNASGSILNTLQQLKFYKPYICDNDPKYER----L 544
Query: 530 VESIMLRLSRLNNFVAVSP--SIKQRAHMRAPESLPLILEPESRL 572
V +I+ L ++ + S + + A M E + E ++
Sbjct: 545 VNAILDFLPKIEENLICSKYTDLLRIALM--AEDEAIFEEAHKQV 587
Score = 54.9 bits (131), Expect = 8e-08
Identities = 68/421 (16%), Positives = 135/421 (32%), Gaps = 132/421 (31%)
Query: 307 QMNFVSNE-----KELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSI 361
M+F + E K++ S F + + D +++ + +S E E+ I
Sbjct: 6 HMDFETGEHQYQYKDILSVFEDAFVD-NFDC---KDVQDM------PKSILSKE-EIDHI 54
Query: 362 FIENVRQWDPDILIGYEIETLSWGYLL--ERGY------VLGLNLNQELSRITEVEKRNS 413
+ D + G L W L E VL +N +S I +++ S
Sbjct: 55 IMS------KDAVSG--TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPS 106
Query: 414 SRDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWE 473
+ Q L+ + Q + Y+V R+ + KL
Sbjct: 107 MMTRMYIEQRD-------RLYN------DNQVFA----KYNV--SRLQPY-LKL------ 140
Query: 474 HRTHLYKWMTVEHYLIRVTGI------IRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQ 527
R L + + ++ + G+ ++ +M F I F+ L+ +
Sbjct: 141 -RQALLE-LRPAKNVL-IDGVLGSGKTWVALDVCLSYKVQCKMD--FKI-FW--LNLKNC 192
Query: 528 FRVESIMLRLSRLNNFVAVSPSIKQRAHMRAPESLPLILEP---------ESRLYTDPII 578
E+++ L +L + P+ R+ ++ L + +S+ Y + ++
Sbjct: 193 NSPETVLEMLQKL--LYQIDPNWTSRSD--HSSNIKLRIHSIQAELRRLLKSKPYENCLL 248
Query: 579 VLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGC-----------ID----LNVS 623
VL V++ ++F C D +
Sbjct: 249 VLL---------------------NVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTT 287
Query: 624 IRSLKKLQQNLTISPSGVAFVDKSIRCGI--LPKMLQEILDTRLMVKQSMKEYKFSESLR 681
SL LT + + K + C LP+ E+L T S+ +ES+R
Sbjct: 288 HISLDHHSMTLT-PDEVKSLLLKYLDCRPQDLPR---EVLTTNPRR-LSI----IAESIR 338
Query: 682 N 682
+
Sbjct: 339 D 339
Score = 30.6 bits (68), Expect = 2.3
Identities = 28/215 (13%), Positives = 57/215 (26%), Gaps = 72/215 (33%)
Query: 53 RIRRDSMKGIVD--VKCFEESSLER-----SMKPDDRPSPTR------KNKSTRSSFDS- 98
+ D + I++ + E + + S+ P PT +
Sbjct: 349 HVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVV 408
Query: 99 DMFPSSS-----SRDRLYTDPIIVLDF-------QSLYPSVIIAYN----YCFSTC---- 138
+ S ++ + P I L+ +L+ S++ YN +
Sbjct: 409 NKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPY 468
Query: 139 ------------LGRVEHLGVSDSFP-----FGCIASRESNQSPPNKDSIHEAEITH--- 178
L +EH F F + E +I H
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFL----------------EQKIRHDST 512
Query: 179 PDCSKSSQIDFNPDL--FKSFIRKQLETPKRRICD 211
+ S ++ L +K +I +R +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA 547
>1noy_A Protein (DNA polymerase (E.C.2.7.7.7)); exonuclease, DNA-binding,
complex (nucleotidyltransferase/DNA); HET: DNA; 2.20A
{Enterobacteria phage T4} SCOP: c.55.3.5 PDB: 1noz_A*
Length = 388
Score = 47.7 bits (112), Expect = 8e-06
Identities = 38/289 (13%), Positives = 80/289 (27%), Gaps = 56/289 (19%)
Query: 266 YDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMN-------FVSNEKELF 318
YD + FY E + Q NE+++
Sbjct: 136 YDSIDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVIYMPFDNERDML 195
Query: 319 STFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYE 378
+I Q P I G+ IE F Y++ R ++ +
Sbjct: 196 MEYINLWEQKRPAIFTGWNIEGFDVPYIMNR-------------VKMILGERSMKR---- 238
Query: 379 IETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLR 438
S I V+ + + G +++ L +
Sbjct: 239 -----------------------FSPIGRVKSKLLQNMYGSKEIYSIDGVSILDYLDLYK 275
Query: 439 --HEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIR 496
NL S++ E++ H + + + + + + +I V +
Sbjct: 276 KFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRY-----ISYNIIDVESVQA 330
Query: 497 LIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRVESIMLRLSRLNNFVA 545
+ + FI M+ + F V+S + ++I+ + + V
Sbjct: 331 IDKIRGFIDLVLSMSYYAKMPFSGVMSPIKTW--DAIIFNSLKGEHKVI 377
>2db6_A SH3 and cysteine rich domain 3; STAC3, C1 domain, cystein-rich
domain, zinc-binding domain, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 74
Score = 34.1 bits (78), Expect = 0.012
Identities = 10/42 (23%), Positives = 15/42 (35%), Gaps = 5/42 (11%)
Query: 9 CELCNSEEVIFPWQLSSV-HRCNQCGACFHTKCHSQLPCKRC 49
C++C + RC C H C S + +RC
Sbjct: 31 CDVCAR----MIVLNNKFGLRCKNCKTNIHEHCQSYVEMQRC 68
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 37.3 bits (86), Expect = 0.017
Identities = 26/232 (11%), Positives = 57/232 (24%), Gaps = 9/232 (3%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CKRCIRMRIRRDSMKGIVDVK 66
C+ C S + + +C+ C H +C +P C R R ++ +D +
Sbjct: 116 CDHCGS---LLYGLIHQGMKCDTCMMNVHKRCVMNVPSLCGTDHTERRGRIYIQAHIDRE 172
Query: 67 CFEESSLERSMKPDDRPSPTRKNKSTRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPS 126
+ P+ S + + + +
Sbjct: 173 VLIVVVRDAKNLVPMDPNGLSDPYVKLKLIPDPKSESKQKTKTIKSSLNPEWNETFRFQL 232
Query: 127 VIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKD----SIHEAEITHPDCS 182
+ S + + +D E ++ + S E E +
Sbjct: 233 KESDKDRRLSVEIWDWDLTSRNDFMGSLSFGISELQKAGVDGWFKLLSQEEGEYFNVPVP 292
Query: 183 KSSQIDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLN 234
K K + K + + + +M L + N
Sbjct: 293 PEGSEGNEELRQKFERAKIGQGTKAPEEKTANTISKFDNNGNRDRMKLTDFN 344
Score = 33.1 bits (75), Expect = 0.36
Identities = 11/53 (20%), Positives = 14/53 (26%), Gaps = 6/53 (11%)
Query: 9 CELCNSEEVIFPWQL-SSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRDSMK 60
C C F W +C C H +CH + C S
Sbjct: 51 CSHCTD----FIWGFGKQGFQCQVCSFVVHKRCHEFVT-FSCPGADKGPASDD 98
>1faq_A RAF-1; transferase, serine/threonine-protein kinase, proto-
oncogene, zinc, ATP-binding, phorbol-ester binding; NMR
{Homo sapiens} SCOP: g.49.1.1 PDB: 1far_A
Length = 52
Score = 32.4 bits (74), Expect = 0.035
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCI 50
C++C F RC CG FH C +++P C+
Sbjct: 17 CDICQK----FLLN---GFRCQTCGYKFHEHCSTKVP-TMCV 50
>3ky9_A Proto-oncogene VAV; calponin homology domain, DBL homology domain,
pleckst homology domain, C1 domain, guanine-nucleotide
releasing FA metal-binding; 2.73A {Homo sapiens} PDB:
2d86_A
Length = 587
Score = 35.8 bits (82), Expect = 0.046
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP-CKRC 49
C+ C +RC++C A H +C ++P C R
Sbjct: 532 CKACQML---LRGTFYQGYRCHRCRASAHKECLGRVPPCGRH 570
>2yuu_A NPKC-delta, protein kinase C delta type; metal binding protein,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 83
Score = 32.9 bits (75), Expect = 0.047
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 6/51 (11%)
Query: 9 CELCNSEEVIFPWQLSS-VHRCNQCGACFHTKCHSQLPCKRCIRMRIRRDS 58
C +C F W L+ ++C QC A H KC ++ + C
Sbjct: 31 CSVCKD----FVWGLNKQGYKCRQCNAAIHKKCIDKIIGR-CTGTAANSRD 76
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 35.8 bits (82), Expect = 0.063
Identities = 59/410 (14%), Positives = 122/410 (29%), Gaps = 141/410 (34%)
Query: 350 HFVSNE-KELFSIFIENVRQWDPDILIGYEIETLSWGYLLER--GYVLGLNLNQELSRIT 406
F++++ +E F+ + +P + E + L+ + GYV L ++ +
Sbjct: 27 FFIASQLQEQFNKILP-----EPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFD 81
Query: 407 EVEKRNSSRDEVKNTQLQMPGR----IVINLW-----RLLRHEVNLQSYTFENIMYHVLH 457
+V E +N L+ G + L L++ + +++Y
Sbjct: 82 QVLN--LCLTEFENCYLE--GNDIHALAAKLLQENDTTLVKTKELIKNY------ITARI 131
Query: 458 E-RIPL---HSWKLL---------------------TCWWEHRTHLYKWMTVEHYLIRVT 492
+ P + L + E R LY + Y + V
Sbjct: 132 MAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELR-DLY-----QTYHVLVG 185
Query: 493 GIIRLIEQL--DFIGRTSEMARLF--GIQFYEVLSRGSQFRVESIMLRLSRLNNFVAVSP 548
+I+ + + I T + ++F G+ E L S +P
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-------------------TP 226
Query: 549 SIKQRAHMRAPESLPLILEPESRL-----YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGR 603
P S PLI + Y ++ P + +Y G
Sbjct: 227 DKDYLLS--IPISCPLIG-----VIQLAHY---VVTAKLLGFTPGELRSY---LKGATGH 273
Query: 604 VEHLGVS----------DSFPFGCIDLNVSIRSLKKL-------QQ---NLTISPSGVA- 642
+ L V+ +SF +++ L + N ++ PS +
Sbjct: 274 SQGL-VTAVAIAETDSWESF------FVSVRKAITVLFFIGVRCYEAYPNTSLPPSILED 326
Query: 643 FVDK---------SIRCGILPKMLQEILDTRLMVKQSMKEYK-FSESLRN 682
++ SI + + +Q+ ++ + K SL N
Sbjct: 327 SLENNEGVPSPMLSIS-NLTQEQVQDYVNK---TNSHLPAGKQVEISLVN 372
Score = 31.6 bits (71), Expect = 1.2
Identities = 39/238 (16%), Positives = 65/238 (27%), Gaps = 79/238 (33%)
Query: 228 MGLDNLN------EVTSHVENYYLTVLAVEIHAISRALLKPDPAYDEV-------KAIF- 273
MG+D +V + +N++ I I +P + K I
Sbjct: 1631 MGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVIN----NPVNLTIHFGGEKGKRIRE 1686
Query: 274 -YYLYTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDI 332
Y D K+ E E+ F S + L +T + Q P +
Sbjct: 1687 NYSAMIFETIVDGKLK-----TEKIFKEINEHSTSYTFRSEKGLLSAT--QFT-Q--PAL 1736
Query: 333 LIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQW----DPDILIGYEIETLSWG-Y- 386
+ F E+++ G S G Y
Sbjct: 1737 T------LME----------------KAAF-EDLKSKGLIPADATFAG-----HSLGEYA 1768
Query: 387 -LLERGYVLGLNLNQELSRITEVEKR------NSSRDEVKNTQLQM----PGRIVINL 433
L V+ + + L + V R RDE+ + M PGR+ +
Sbjct: 1769 ALASLADVMSI---ESLVEV--VFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASF 1821
>2enn_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 77
Score = 32.0 bits (73), Expect = 0.088
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
Query: 9 CELCNSEEVIFPWQLSS-VHRCNQCGACFHTKCHSQLPCKRCI 50
C +C+ F W L+ ++C QC A H KC ++ K C
Sbjct: 37 CSVCHE----FVWGLNKQGYQCRQCNAAIHKKCIDKVIAK-CT 74
>2vrw_B P95VAV, VAV1, proto-oncogene VAV; lipoprotein, GTP-binding,
metal-binding, phosphoprotein, exchange factor, RAC,
GTPase, membrane domain; 1.85A {Mus musculus} PDB:
3bji_A 1f5x_A
Length = 406
Score = 34.4 bits (79), Expect = 0.11
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 4/44 (9%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP-CKRCIR 51
C+ C +Q +RC +C A H +C ++P C R +
Sbjct: 360 CKACQMLLRGTFYQG---YRCYRCRAPAHKECLGRVPPCGRHGQ 400
>1r79_A Diacylglycerol kinase, delta; C1 domain, cystein-rich zinc
binding domain, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
SCOP: g.49.1.1
Length = 84
Score = 31.9 bits (72), Expect = 0.12
Identities = 13/44 (29%), Positives = 17/44 (38%), Gaps = 8/44 (18%)
Query: 7 FIC-ELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRC 49
+C + C S + W RC C A HT C L +C
Sbjct: 42 TVCDKTCGSVLRLQDW------RCLWCKAMVHTSCKESLL-TKC 78
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin
regulator, metal-binding, finger, signaling protein;
NMR {Homo sapiens}
Length = 71
Score = 31.4 bits (71), Expect = 0.12
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--QLP-----CKRCIRMRIR 55
+C +C E + + C+ C H +C+ +P C+ C++ R R
Sbjct: 18 VCSICMDGE---SQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 69
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.17
Identities = 8/27 (29%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 625 RSLKKLQQNLTI-SP-SGVAF-VDKSI 648
++LKKLQ +L + + S A + ++
Sbjct: 20 QALKKLQASLKLYADDSAPALAIKATM 46
Score = 32.6 bits (73), Expect = 0.18
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 6/22 (27%)
Query: 69 EESS---LERSMK---PDDRPS 84
E+ + L+ S+K D P+
Sbjct: 18 EKQALKKLQASLKLYADDSAPA 39
Score = 29.5 bits (65), Expect = 2.0
Identities = 5/18 (27%), Positives = 12/18 (66%), Gaps = 3/18 (16%)
Query: 549 SIKQ-RAHMR--APESLP 563
++K+ +A ++ A +S P
Sbjct: 21 ALKKLQASLKLYADDSAP 38
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from
bromodomain-containing protein...; PHD finger, histone
CODE, transcription; NMR {Homo sapiens}
Length = 88
Score = 31.5 bits (71), Expect = 0.17
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 10/55 (18%)
Query: 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--QLP-----CKRCIRMRIR 55
+C +C E + + C+ C H +C+ +P C+ C++ R R
Sbjct: 27 VCSICMDGE---SQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSRAR 78
>1rfh_A RAS association (ralgds/AF-6) domain family 5; zinc, signal
transduction, apoptosis, cysteine rich domain, metal
binding protein; NMR {Mus musculus}
Length = 59
Score = 30.2 bits (68), Expect = 0.25
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 8/41 (19%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CK 47
C+LC + + RC C H++C S + C+
Sbjct: 25 CDLCGR----EVLRQAL--RCANCKFTCHSECRSLIQLDCR 59
>2eli_A Protein kinase C alpha type; PKC-alpha, PKC-A, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 85
Score = 30.6 bits (69), Expect = 0.30
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP 45
C+ C S + + +C+ C H +C +P
Sbjct: 31 CDHCGS---LLYGLIHQGMKCDTCDMNVHKQCVINVP 64
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction,
apoptosis, cysteine rich domain; NMR {Mus musculus}
Length = 72
Score = 30.3 bits (68), Expect = 0.33
Identities = 10/41 (24%), Positives = 16/41 (39%), Gaps = 8/41 (19%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP--CK 47
C+LC + RC C H++C S + C+
Sbjct: 38 CDLCGR----EVLR--QALRCANCKFTCHSECRSLIQLDCR 72
>1y8f_A UNC-13 homolog A, MUNC13-1; cysteine-rich domain, C1-domain,
zinc-binding domain, endocytosis/exocytosis,signaling
protein complex; NMR {Rattus norvegicus}
Length = 66
Score = 29.8 bits (67), Expect = 0.40
Identities = 13/42 (30%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 9 CELCNSEEVIFPWQLSS-VHRCNQCGACFHTKCHSQLP--CK 47
C C W ++ RC +CG H KC L CK
Sbjct: 27 CYECEG----LLWGIARQGMRCTECGVKCHEKCQDLLNADCK 64
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Length = 89
Score = 30.1 bits (67), Expect = 0.56
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 6/33 (18%)
Query: 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKC 40
+C++C W S+ C C FH C
Sbjct: 17 MCDVCEV------WTAESLFPCRVCTRVFHDGC 43
>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase,
protein phosphatase, hydrolase, magne metal-binding;
1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A
Length = 187
Score = 31.2 bits (70), Expect = 0.76
Identities = 12/60 (20%), Positives = 18/60 (30%)
Query: 586 YPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVD 645
P + +E + F I I ++LQQ I S + F D
Sbjct: 85 VPGAAASRTSEIEGANQLLELFDLFRYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFD 144
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 74
Score = 29.1 bits (65), Expect = 0.82
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 7/35 (20%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43
C +C+S L C CG H C ++
Sbjct: 18 CNICHSL-------LIQGQSCETCGIRMHLPCVAK 45
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus
musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Length = 50
Score = 28.6 bits (64), Expect = 0.83
Identities = 6/18 (33%), Positives = 9/18 (50%)
Query: 28 RCNQCGACFHTKCHSQLP 45
+C CG H KC ++
Sbjct: 30 KCEDCGMNVHHKCREKVA 47
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD
domain, histone-lysine N-methyltransferase, H3 lysine-4
specific MLL3; NMR {Homo sapiens}
Length = 111
Score = 29.9 bits (67), Expect = 0.96
Identities = 9/33 (27%), Positives = 12/33 (36%), Gaps = 5/33 (15%)
Query: 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKC 40
C +C+S L C CG +H C
Sbjct: 9 NCAVCDSPG-----DLLDQFFCTTCGQHYHGMC 36
>2yt5_A Metal-response element-binding transcription factor 2;
zinc-regulated factor 1, ZIRF1, metal-response element
DNA-binding protein M96; NMR {Mus musculus}
Length = 66
Score = 28.7 bits (64), Expect = 1.0
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS 42
+C +C E P ++ V C++CG +H CH+
Sbjct: 8 VCTICQEEYSEAPNEM--VI-CDKCGQGYHQLCHT 39
>2enz_A NPKC-theta, protein kinase C theta type; zinc binding,
DAG/PE-binding protein, diacylglycerol, phorbol ester,
TCR, T-cell, structural genomics; NMR {Homo sapiens}
Length = 65
Score = 28.6 bits (64), Expect = 1.0
Identities = 8/37 (21%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP 45
CE C + + +C+ CG H +C +++
Sbjct: 26 CEHCGT---LLWGLARQGLKCDACGMNVHHRCQTKVA 59
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC,
gtpas activation, metal-binding, phorbol-ester binding,
SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Length = 463
Score = 31.4 bits (71), Expect = 1.1
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP 45
CE C + ++ +C CG H +C +P
Sbjct: 223 CEYCAN---FMWGLIAQGVKCADCGLNVHKQCSKMVP 256
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken
structural genomics/proteomics initiative, RSGI, gene
regulation; NMR {Mus musculus} SCOP: g.50.1.2
Length = 88
Score = 28.9 bits (64), Expect = 1.2
Identities = 16/61 (26%), Positives = 19/61 (31%), Gaps = 16/61 (26%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS--------QLP-----CKRCIRMRIR 55
C +C V QL C +C +H CH P C RC R R
Sbjct: 19 CVVCRQMTVASGNQLVE---CQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75
Query: 56 R 56
Sbjct: 76 M 76
>2row_A RHO-associated protein kinase 2; ATP-binding, coiled coil,
cytoplasm, membrane, metal-binding, nucleotide-binding,
phorbol-ester binding; NMR {Rattus norvegicus}
Length = 84
Score = 28.9 bits (64), Expect = 1.4
Identities = 10/48 (20%), Positives = 13/48 (27%), Gaps = 12/48 (25%)
Query: 9 CELCNSEEVIFPWQLSSVH---RCNQCGACFHTKCHSQL-----PCKR 48
CE C W + C +C H + PCK
Sbjct: 38 CEACMK----PLWHMFKPPPALECRRCHIKCHKDHMDKKEEIIAPCKV 81
>3b34_A Aminopeptidase N; protease, hydrolase, thermolysin, phenylal
membrane, metal-binding, metalloprotease; HET: PHE;
1.30A {Escherichia coli K12} PDB: 2hpt_A* 3b2p_A*
2hpo_A* 3b2x_A* 3b37_A* 3b3b_A* 3ked_A* 3qjx_A 3puu_A
2dq6_A 2dqm_A* 2zxg_A*
Length = 891
Score = 30.3 bits (68), Expect = 2.7
Identities = 8/47 (17%), Positives = 15/47 (31%), Gaps = 1/47 (2%)
Query: 429 IVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTC-WWEH 474
+ N +L + +I + HE + +TC W
Sbjct: 290 NIFNSKYVLARTDTATDKDYLDIERVIGHEYFHNWTGNRVTCRDWFQ 336
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger,
transferase-structural protein; 1.47A {Homo sapiens}
PDB: 2ln0_A
Length = 112
Score = 28.5 bits (63), Expect = 2.9
Identities = 12/61 (19%), Positives = 19/61 (31%), Gaps = 4/61 (6%)
Query: 8 ICELCNSEEVIFPWQLSSVH-RCNQCGACFHTKCHSQLPCKRCIRMRIRRDSMKGIVDVK 66
IC C + + C CG H C L + +R++ + I
Sbjct: 7 ICSFCLGTKEQNREKKPEELISCADCGNSGHPSC---LKFSPELTVRVKALRWQCIECKT 63
Query: 67 C 67
C
Sbjct: 64 C 64
>3hgf_A Rhoptry protein fragment; helix-turn-helix, nucleotide binding
protein; 4.00A {Plasmodium yoelii yoelii}
Length = 107
Score = 27.8 bits (61), Expect = 4.0
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 397 NLNQELSRITEVEKRNSSRDEVKNTQL 423
N+ + L+ I E+EK +S +EVKN +
Sbjct: 32 NMKKLLNEIAEIEKDKTSLEEVKNINM 58
>1kbe_A Kinase suppressor of RAS; KSR, cysteine-rich domain, zinc-
binding protein, signaling protein; NMR {Mus musculus}
SCOP: g.49.1.1 PDB: 1kbf_A
Length = 49
Score = 26.5 bits (58), Expect = 4.5
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP-CK 47
C +C + + +C C H KC + P C+
Sbjct: 17 CNVCQ--KSMIFG-----VKCKHCRLKCHNKCTKEAPACR 49
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3
ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Length = 238
Score = 28.9 bits (64), Expect = 4.9
Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 14/50 (28%)
Query: 7 FICELCNSEEVIFPWQLSSVHRCNQCGACFHTKC-------HSQLPCKRC 49
IC +C+ ++ Q C CG H C +++ C C
Sbjct: 181 KICNICH--SLLIQGQ-----SCETCGIRMHLPCVAKYFQSNAEPRCPHC 223
>2wvv_A Alpha-L-fucosidase; alpha-L-fucose, hydrolase, glycoside hydrolase
family 29; 1.73A {Bacteroides thetaiotaomicron} PDB:
2xii_A* 2xib_A* 2wvv_B 2wvt_A* 2wvu_A* 2wvs_A*
Length = 450
Score = 29.4 bits (66), Expect = 5.2
Identities = 9/80 (11%), Positives = 23/80 (28%), Gaps = 15/80 (18%)
Query: 318 FSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGY 377
+ + +++ P + I + G + + L + + PD +
Sbjct: 209 TAHAEQMLKELVPGVAINSRLRADDKG----KRHFDSNGRLMGDYESGYERRLPDPVKDL 264
Query: 378 EIETL-----------SWGY 386
++ WGY
Sbjct: 265 KVTQWDWEACMTIPENQWGY 284
>3swr_A DNA (cytosine-5)-methyltransferase 1; epigenetics, DNA
methyltransferase fold, maintenance methyla transferase;
HET: DNA SFG MES; 2.49A {Homo sapiens} PDB: 3pta_A*
3pt6_A* 3pt9_A* 4da4_A*
Length = 1002
Score = 29.5 bits (65), Expect = 5.5
Identities = 18/109 (16%), Positives = 35/109 (32%), Gaps = 13/109 (11%)
Query: 27 HRCNQCGACFHTKCHSQLPCKRCIRMRIRRDSMKGIVDVKCFE------ESSLERSMKPD 80
RC C C +C CK ++ S + + +C + E
Sbjct: 53 RRCGVCEVCQQPECGKCKACKDMVKFGGSGRSKQACQERRCPNMAMKEADDDEEVDDNIP 112
Query: 81 DRPSPTRKNKSTRSSFDSDMFPSSSSRDRLYTDPIIVLDFQSLYPSVII 129
+ PSP + ++ + + +R + + +S Y V I
Sbjct: 113 EMPSPKKMHQGKKKK-------QNKNRISWVGEAVKTDGKKSYYKKVCI 154
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: g.50.1.1
Length = 134
Score = 27.6 bits (60), Expect = 7.8
Identities = 13/57 (22%), Positives = 17/57 (29%), Gaps = 12/57 (21%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP---------CKRCIRMRIRR 56
C LC + S+ C C TKC + CK C+ R
Sbjct: 58 CILCGEQ---LGMLGSASVVCEDCKKNVCTKCGVETSNNRPHPVWLCKICLEQREVW 111
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced,
nucleosome, E3 ligase, transcription; NMR {Homo
sapiens} PDB: 2ke1_A 2kft_A
Length = 66
Score = 25.9 bits (57), Expect = 9.8
Identities = 8/42 (19%), Positives = 16/42 (38%), Gaps = 9/42 (21%)
Query: 29 CNQCGACFHTKCH----SQLP-----CKRCIRMRIRRDSMKG 61
C+ C FH C ++P C C++ ++ +
Sbjct: 23 CDGCPRAFHLACLSPPLREIPSGTWRCSSCLQATVQEVQPRA 64
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.422
Gapped
Lambda K H
0.267 0.0538 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,792,724
Number of extensions: 662484
Number of successful extensions: 1623
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1587
Number of HSP's successfully gapped: 78
Length of query: 696
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 596
Effective length of database: 3,909,693
Effective search space: 2330177028
Effective search space used: 2330177028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.7 bits)