RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy5925
(696 letters)
>d1q8ia1 c.55.3.5 (A:2-389) Exonuclease domain of family B DNA
polymerases {Escherichia coli [TaxId: 562]}
Length = 388
Score = 106 bits (265), Expect = 3e-25
Identities = 40/270 (14%), Positives = 83/270 (30%), Gaps = 8/270 (2%)
Query: 277 YTCPPEEDRKVGIILIGQESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGY 336
V L P ++ I + + EL+ +E + +
Sbjct: 125 VEGDMHNGTIVNARLKPHPDYRPPLKWVSIDI-ETTRHGELYCIGLEG--CGQRIVYMLG 181
Query: 337 EIETFSWGYLLERHFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGL 396
+ E +V++ +L +DPD++IG+ + L + L
Sbjct: 182 PENGDASSLDFELEYVASRPQLLEKLNAWFANYDPDVIIGWNVVQFDLRMLQKHAERYRL 241
Query: 397 NLNQELSRITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLLRHE-VNLQSYTFENIMYHV 455
L L R + + Q GR++I+ L+ N S++ E + +
Sbjct: 242 PL--RLGRDNSELEWREHGFKNGVFFAQAKGRLIIDGIEALKSAFWNFSSFSLETVAQEL 299
Query: 456 LHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFG 515
L E + + + R K + L + ++ + + + E A + G
Sbjct: 300 LGEGKSIDNPWDRMDEIDRRFAEDKPALATYNLKDCELVTQIFHKTEIMPFLLERATVNG 359
Query: 516 IQFYEVLSRGSQFRVESIMLRLSRLNNFVA 545
+ GS + +VA
Sbjct: 360 LPVDRHG--GSVAAFGHLYFPRMHRAGYVA 387
>d1tgoa1 c.55.3.5 (A:1-347) Exonuclease domain of family B DNA
polymerases {Archaeon Thermococcus gorgonarius [TaxId:
71997]}
Length = 347
Score = 93.0 bits (230), Expect = 5e-21
Identities = 47/224 (20%), Positives = 91/224 (40%), Gaps = 11/224 (4%)
Query: 299 PEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKEL 358
E++ + + +E E F+ + G + T+ L VS EKE+
Sbjct: 133 EELKMLAFDIETLYHEGEEFA--EGPILMISYADEEGARVITWKNIDLPYVDVVSTEKEM 190
Query: 359 FSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSSRDEV 418
F++ V++ DPD+LI Y + + YL +R LG+ L R K D
Sbjct: 191 IKRFLKVVKEKDPDVLITYNGDNFDFAYLKKRSEKLGVKFI--LGREGSEPKIQRMGD-- 246
Query: 419 KNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHL 478
+++ GRI +L+ ++R +NL +YT E + + + + + WE L
Sbjct: 247 -RFAVEVKGRIHFDLYPVIRRTINLPTYTLEAVYEAIFGQPKEKVYAEEIAQAWETGEGL 305
Query: 479 YKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVL 522
+ + + L ++ ++++RL G ++V
Sbjct: 306 ER--VARYSMEDAKVTYELGKEF--FPMEAQLSRLVGQSLWDVS 345
>d1tgoa2 e.8.1.1 (A:348-773) Family B DNA polymerase {Archaeon
Thermococcus gorgonarius [TaxId: 71997]}
Length = 426
Score = 83.0 bits (204), Expect = 2e-17
Identities = 41/162 (25%), Positives = 65/162 (40%), Gaps = 29/162 (17%)
Query: 529 RVESIMLRLSRLNNFVAVS-PSIKQRAHMRAPESLPLILEPESRLYTDPIIVLDFQSLYP 587
VE +LR + N +A + P ++ A R + + EPE L+ + I+ LDF+SLYP
Sbjct: 5 LVEWFLLRKAYERNELAPNKPDERELARRRESYAGGYVKEPERGLW-ENIVYLDFRSLYP 63
Query: 588 SVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKS 647
S+II +N T GC + +V+ G F
Sbjct: 64 SIIITHNVSPDTL------------NREGCEEYDVA-------------PQVGHKFCKD- 97
Query: 648 IRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSM 689
G +P +L ++L+ R VK+ MK + L
Sbjct: 98 -FPGFIPSLLGDLLEERQKVKKKMKATIDPIEKKLLDYRQRA 138
Score = 52.2 bits (124), Expect = 1e-07
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 113 DPIIVLDFQSLYPSVIIAYNYCFST 137
+ I+ LDF+SLYPS+II +N T
Sbjct: 51 ENIVYLDFRSLYPSIIITHNVSPDT 75
>d1ih7a2 e.8.1.1 (A:376-903) Family B DNA polymerase {Bacteriophage
RB69 [TaxId: 12353]}
Length = 528
Score = 76.6 bits (187), Expect = 3e-15
Identities = 23/112 (20%), Positives = 42/112 (37%), Gaps = 13/112 (11%)
Query: 564 LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVS 623
+ EP Y ++ D SLYPS+I N T G + + D
Sbjct: 20 FVKEPIPNRY-KYVMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHDYIN--------- 69
Query: 624 IRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYK 675
++ + SP+G+ + R G++P + ++ + R K M +
Sbjct: 70 -AVAERPSDVYSCSPNGMMYYKD--RDGVVPTEITKVFNQRKEHKGYMLAAQ 118
Score = 58.9 bits (141), Expect = 1e-09
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 113 DPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSD 149
++ D SLYPS+I N T G + + D
Sbjct: 30 KYVMSFDLTSLYPSIIRQVNISPETIAGTFKVAPLHD 66
>d1noya_ c.55.3.5 (A:) Exonuclease domain of family B DNA
polymerases {Bacteriophage T4 [TaxId: 10665]}
Length = 372
Score = 69.9 bits (170), Expect = 2e-13
Identities = 37/358 (10%), Positives = 96/358 (26%), Gaps = 28/358 (7%)
Query: 187 IDFNPDLFKSFIRKQLETPKRRICDSYAIDAMTPDTTGDYQMGLDNLNEVTSHVENYYLT 246
+++ P +F + E+ + I + D + + + ++
Sbjct: 30 VEYLPTMF---RHCKEESKYKDIYGKN-CAPQKFPSMKDARDWMKRMEDIGLEAL----- 80
Query: 247 VLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGIILIGQESELPEVRTKPI 306
+ + F + C E + E E+ +
Sbjct: 81 ---GMNDFKLAYISDTYGSEIVYDRKFVRVANCDIEVTGDKFPDPMKAEYEIDAITHYDS 137
Query: 307 QMN----FVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSNEKELFSIF 362
+ F S + + G + + NE+++ +
Sbjct: 138 IDDRFYVFDLLNSMYGSVSKWDAKLAAKLDCEGGDEVPQEILDRVIYMPFDNERDMLMEY 197
Query: 363 IENVRQWDPDILIGYEIETLSWGYL---LERGYVLGLNLNQELSRITEVEKRNSSRDEVK 419
I Q P I G+ IE Y+ ++ + + + +
Sbjct: 198 INLWEQKRPAIFTGWNIEGFDVPYIMNRVKMILGERSMKRFSPIGRVKSKLLQNMYGSKE 257
Query: 420 NTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLY 479
+ + NL S++ E++ H + + + +
Sbjct: 258 IYSIDGVSILDYLDLYKKFAFTNLPSFSLESVAQHETKKGKLPYDGPINKLRETNHQRY- 316
Query: 480 KWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGSQFRV-ESIMLR 536
+ + +I V + + + FI M+ + F V+ S + ++I+
Sbjct: 317 ----ISYNIIDVESVQAIDKIRGFIDLVLSMSYYAKMPFSGVM---SPIKTWDAIIFN 367
>d1q8ia2 e.8.1.1 (A:390-783) Family B DNA polymerase {Escherichia
coli [TaxId: 562]}
Length = 394
Score = 67.7 bits (164), Expect = 1e-12
Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 28/120 (23%)
Query: 557 RAPESLP--LILEPESRLYTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFP 614
P + P +++ LY D ++VLD++SLYPS++ + + +
Sbjct: 5 VPPHASPGGYVMDSRPGLY-DSVLVLDYKSLYPSIVRTFLIDPVGLVEGMAQ-------- 55
Query: 615 FGCIDLNVSIRSLKKLQQNLTISPSGVAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEY 674
+ S G S LP+++ I R K+ +
Sbjct: 56 -----------------PDPEHSTEGFLDAWFSREKHCLPEIVTNIWHGRDEAKRQGNKP 98
Score = 53.4 bits (127), Expect = 4e-08
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 113 DPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFP 152
D ++VLD++SLYPS++ + + + S
Sbjct: 24 DSVLVLDYKSLYPSIVRTFLIDPVGLVEGMAQPDPEHSTE 63
>d1s5ja2 e.8.1.1 (A:450-864) Family B DNA polymerase {Sulfolobus
solfataricus [TaxId: 2287]}
Length = 415
Score = 62.3 bits (150), Expect = 8e-11
Identities = 29/169 (17%), Positives = 58/169 (34%), Gaps = 33/169 (19%)
Query: 530 VESIMLRLSRLNNFV--------AVSPSIKQRAHMRAPESL-PLILEPESRLYTDPIIVL 580
V+++ R N++ A S +I+ A ++ ++++P + ++ I VL
Sbjct: 6 VKNLYYWEHRKRNWLIPLKEEILAKSSNIRTSALIKGKGYKGAVVIDPPAGIF-FNITVL 64
Query: 581 DFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSIRSLKKLQQNLTISPSG 640
DF SLYPS+I +N + T K +
Sbjct: 65 DFASLYPSIIRTWNLSYETV-----------------------DIQQCKKPYEVKDETGE 101
Query: 641 VAFVDKSIRCGILPKMLQEILDTRLMVKQSMKEYKFSESLRNLTMLNSM 689
V + R GI + + D R+ + + + + + L
Sbjct: 102 VLHIVCMDRPGITAVITGLLRDFRVKIYKKKAKNPNNSEEQKLLYDVVQ 150
Score = 49.2 bits (116), Expect = 1e-06
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 113 DPIIVLDFQSLYPSVIIAYNYCFSTC 138
I VLDF SLYPS+I +N + T
Sbjct: 59 FNITVLDFASLYPSIIRTWNLSYETV 84
>d1ih7a1 c.55.3.5 (A:1-375) Exonuclease domain of family B DNA
polymerases {Bacteriophage RB69 [TaxId: 12353]}
Length = 375
Score = 53.3 bits (127), Expect = 4e-08
Identities = 34/191 (17%), Positives = 71/191 (37%), Gaps = 12/191 (6%)
Query: 350 HFVSNEKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGY-VLGLNLNQELSRITEV 408
NEKEL ++ +Q P IL G+ +E+ Y+ R + G + + LS +
Sbjct: 189 MPFDNEKELLMEYLNFWQQKTPVILTGWNVESFDIPYVYNRIKNIFGESTAKRLSPHRKT 248
Query: 409 EKRNSSRDEVKNTQLQMPGRIVINLWRLLR--HEVNLQSYTFENIMYHVLHERIPLHSWK 466
+ + + G V++ L + N SY+ + I L+ +
Sbjct: 249 RVKVIENMYGSREIITLFGISVLDYIDLYKKFSFTNQPSYSLDYISEFELNVGKLKYDGP 308
Query: 467 LLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLIEQLDFIGRTSEMARLFGIQFYEVLSRGS 526
+ + + + +I V ++++ + FI + +M IQ V S
Sbjct: 309 ISKLRESNHQRY-----ISYNIIDVYRVLQIDAKRQFINLSLDMGYYAKIQIQSVF---S 360
Query: 527 QFRV-ESIMLR 536
+ ++I+
Sbjct: 361 PIKTWDAIIFN 371
>d2py5a2 e.8.1.1 (A:188-575) phi29 DNA polymerase {Bacteriophage
phi-29 [TaxId: 10756]}
Length = 388
Score = 52.9 bits (126), Expect = 6e-08
Identities = 14/116 (12%), Positives = 33/116 (28%), Gaps = 9/116 (7%)
Query: 573 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIDLNVSI----RSLK 628
+V D SLYP+ + + + + + +P + +
Sbjct: 54 EIGEGMVFDVNSLYPAQMYSRLLPYGEPIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIP 113
Query: 629 KLQQNLTISPSGVAFVD---KSIRCGILPKMLQEILDTRLMVKQSM--KEYKFSES 679
+Q + G ++ I L + E++ + KF +
Sbjct: 114 TIQIKRSRFYKGNEYLKSSGGEIADLWLSNVDLELMKEHYDLYNVEYISGLKFKAT 169
Score = 44.8 bits (105), Expect = 3e-05
Identities = 8/67 (11%), Positives = 20/67 (29%)
Query: 111 YTDPIIVLDFQSLYPSVIIAYNYCFSTCLGRVEHLGVSDSFPFGCIASRESNQSPPNKDS 170
+V D SLYP+ + + + + + +P R +
Sbjct: 54 EIGEGMVFDVNSLYPAQMYSRLLPYGEPIVFEGKYVWDEDYPLHIQHIRCEFELKEGYIP 113
Query: 171 IHEAEIT 177
+ + +
Sbjct: 114 TIQIKRS 120
>d1s5ja1 c.55.3.5 (A:40-449) Exonuclease domain of family B DNA
polymerases {Sulfolobus solfataricus [TaxId: 2287]}
Length = 410
Score = 45.5 bits (107), Expect = 2e-05
Identities = 25/225 (11%), Positives = 68/225 (30%), Gaps = 16/225 (7%)
Query: 238 SHVENYYLTVLAVEIHAISRALLKPDPAYDEVKAIFYYLYTCPPEEDRKVGI---ILIGQ 294
+E+ YL++ ++ I +A D ++ + ++ + ++V I +
Sbjct: 140 GKLESVYLSLDEKDVEEIKKAFADSDEMTRQMAVDWLPIFETEIPKIKRVAIDIEVYTPV 199
Query: 295 ESELPEVRTKPIQMNFVSNEKELFSTFIENVRQWDPDILIGYEIETFSWGYLLERHFVSN 354
+ +P+ + + ++ + + + D + E + +
Sbjct: 200 KGRIPDSQKAEFPIISIALAGSDGLKKVLVLNRNDVN-------EGSVKLDGISVERFNT 252
Query: 355 EKELFSIFIENVRQWDPDILIGYEIETLSWGYLLERGYVLGLNLNQELSRITEVEKRNSS 414
E EL F + + + I++ + + Y+ R L L I
Sbjct: 253 EYELLGRFFDILLE--YPIVLTFNGDDFDLPYIYFRA----LKLGYFPEEIPIDVAGKDE 306
Query: 415 RDEVKNTQLQMPGRIVINLWRLLRHEVNLQSYTFENIMYHVLHER 459
+ + + R E Y + + +L
Sbjct: 307 AKYLAGLHIDLYKFFFNKAVRNYAFEGKYNEYNLDAVAKALLGTS 351
>d1ptqa_ g.49.1.1 (A:) Protein kinase C-delta (PKCdelta) {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 33.1 bits (75), Expect = 0.007
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP 45
C+ C S + + +C CG H KC ++
Sbjct: 14 CDHCGS---LLWGLVKQGLKCEDCGMNVHHKCREKVA 47
>d1kbea_ g.49.1.1 (A:) Kinase suppressor of Ras, Ksr {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 49
Score = 31.3 bits (71), Expect = 0.027
Identities = 9/40 (22%), Positives = 13/40 (32%), Gaps = 8/40 (20%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP-CK 47
C +C +C C H KC + P C+
Sbjct: 17 CNVCQK----SMIF---GVKCKHCRLKCHNKCTKEAPACR 49
>d1xa6a3 g.49.1.1 (A:209-270) Beta-chimaerin, middle domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 62
Score = 31.5 bits (71), Expect = 0.037
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 3/37 (8%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP 45
CE C + ++ RC+ CG H +C +P
Sbjct: 18 CEYCAN---FMWGLIAQGVRCSDCGLNVHKQCSKHVP 51
>d1tbna_ g.49.1.1 (A:) Protein kinase c-gamma {Rat (Rattus rattus)
[TaxId: 10117]}
Length = 66
Score = 31.2 bits (70), Expect = 0.050
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 3/37 (8%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP 45
C+ C S + + +C+ C H +C +P
Sbjct: 22 CDHCGS---LLYGLVHQGMKCSCCEMNVHRRCVRSVP 55
>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 88
Score = 30.6 bits (68), Expect = 0.15
Identities = 13/65 (20%), Positives = 18/65 (27%), Gaps = 16/65 (24%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHS-------------QLPCKRCIRMRIR 55
C +C V + + C +C +H CH C RC R R
Sbjct: 19 CVVCRQMTV---ASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75
Query: 56 RDSMK 60
Sbjct: 76 MAQKN 80
>d1r79a_ g.49.1.1 (A:) Diacylglycerol kinase delta {Human (Homo
sapiens) [TaxId: 9606]}
Length = 84
Score = 30.0 bits (67), Expect = 0.16
Identities = 10/37 (27%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP 45
C +C+ + RC C A HT C L
Sbjct: 41 CTVCD--KTCGSVLRLQDWRCLWCKAMVHTSCKESLL 75
>d1faqa_ g.49.1.1 (A:) RAF-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 29.2 bits (65), Expect = 0.19
Identities = 12/42 (28%), Positives = 18/42 (42%), Gaps = 8/42 (19%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCI 50
C++C F RC CG FH C +++P C+
Sbjct: 17 CDICQK----FLLN---GFRCQTCGYKFHEHCSTKVPTM-CV 50
>d1wfka_ g.50.1.1 (A:) Zinc finger FYVE domain containing protein
19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 88
Score = 29.7 bits (66), Expect = 0.23
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 17/90 (18%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRI---RRDSMKGIVDV 65
C C + F + C CG F C C+ R + + V
Sbjct: 12 CYGCAVK---F-TLFKKEYGCKNCGRAF---------CNGCLSFSALVPRAGNTQQKVCK 58
Query: 66 KCFEESSLERSMKPDDRPSPTRKNKSTRSS 95
+C + S + SP + KS SS
Sbjct: 59 QCHTILT-RGSSDNASKWSPPQNYKSGPSS 87
>d1y02a2 g.50.1.1 (A:20-70) Rififylin (FYVE-RING finger protein
Sakura) {Human (Homo sapiens) [TaxId: 9606]}
Length = 51
Score = 27.6 bits (61), Expect = 0.53
Identities = 12/50 (24%), Positives = 16/50 (32%), Gaps = 9/50 (18%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLP-----CKRCIRMR 53
C+ C + + C C F C SQ+ C C R R
Sbjct: 3 CKSCGAHFANTARK----QTCLDCKKNFCMTCSSQVGNGPRLCLLCQRFR 48
>d1zmec1 g.38.1.1 (C:31-66) PUT3 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 36
Score = 26.7 bits (59), Expect = 0.97
Identities = 8/26 (30%), Positives = 11/26 (42%), Gaps = 1/26 (3%)
Query: 29 CNQCGACFHTKCHSQLPCKRCIRMRI 54
C C H KC PC++C+
Sbjct: 4 CLSCRKR-HIKCPGGNPCQKCVTSNA 28
>d1lo1a_ g.39.1.2 (A:) Steroid hormone receptor Err2 DNA-binding
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 28.0 bits (62), Expect = 1.1
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 26 VHRCNQCGACFHTKCHSQLP-----CKRCIRMRIRRDSMKGIVDVKCFEESSLERSMKPD 80
V C C A F + C + RR S + +K + L+ ++ D
Sbjct: 21 VASCEACKAFFKRTIQGNIEYSCPATNECEITKRRRKSCQACRFMKALKVGMLKEGVRLD 80
Query: 81 DRPSPTRKNK 90
+K K
Sbjct: 81 RVRGGRQKYK 90
>d1joca1 g.50.1.1 (A:1348-1411) Eea1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 64
Score = 26.9 bits (59), Expect = 1.5
Identities = 17/64 (26%), Positives = 18/64 (28%), Gaps = 15/64 (23%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRDSMKGIVDV--K 66
C C F H C QCG F C C S K V V
Sbjct: 11 CMACGKG---FSV-TVRRHHCRQCGNIF---------CAECSAKNALTPSSKKPVRVCDA 57
Query: 67 CFEE 70
CF +
Sbjct: 58 CFND 61
>d1vfya_ g.50.1.1 (A:) vps27p protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 67
Score = 26.5 bits (58), Expect = 2.1
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 17/66 (25%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQLPCKRCIRMRIRRDSMKGIVDVK-- 66
C +C+ + + + H C CG F C+ I + V+
Sbjct: 8 CMICSKKFSLLNRK----HHCRSCGGVF---------CQEHSSNSIPLPDLGIYEPVRVC 54
Query: 67 --CFEE 70
CFE+
Sbjct: 55 DSCFED 60
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 25.3 bits (56), Expect = 2.8
Identities = 5/15 (33%), Positives = 6/15 (40%)
Query: 27 HRCNQCGACFHTKCH 41
+ C CG F H
Sbjct: 6 YICQSCGKGFSRPDH 20
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 25.0 bits (54), Expect = 3.4
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 8/24 (33%)
Query: 27 HRCNQCGACF--------HTKCHS 42
H+C CG CF H +CH+
Sbjct: 2 HKCEVCGKCFSRKDKLKTHMRCHT 25
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 124
Score = 27.0 bits (59), Expect = 3.8
Identities = 9/35 (25%), Positives = 12/35 (34%), Gaps = 3/35 (8%)
Query: 9 CELCNSEEVIFPWQLSSVHRCNQCGACFHTKCHSQ 43
C LC + S+ C C TKC +
Sbjct: 51 CILCGEQ---LGMLGSASVVCEDCKKNVCTKCGVE 82
>d2f22a1 a.213.1.2 (A:1-141) Hypothetical protein BH3987 {Bacillus
halodurans [TaxId: 86665]}
Length = 141
Score = 26.6 bits (58), Expect = 6.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 405 ITEVEKRNSSRDEVKNTQLQMPGRIVINLWRLL 437
I V R+ RD +K ++ PGR+ + RLL
Sbjct: 41 IHIVRVRDVYRDGLKTGSIKFPGRLASDEHRLL 73
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 27.1 bits (58), Expect = 7.4
Identities = 9/33 (27%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 537 LSRLNNF-VAVSPSIKQRAHMRAPESLPLILEP 568
R + +P R ESL +IL+P
Sbjct: 368 FRRFPEMKLKETPVFGYHPAFRNIESLNVILKP 400
>d1wila_ g.50.1.3 (A:) Hypothetical protein KIAA1045 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 25.7 bits (56), Expect = 7.4
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 8 ICELCNSEEVIFPWQLSSVHRCNQCGACFHTKC 40
+C++C EV W S+ C C FH C
Sbjct: 17 MCDVC---EV---WTAESLFPCRVCTRVFHDGC 43
>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 64
Score = 25.0 bits (54), Expect = 7.6
Identities = 9/33 (27%), Positives = 10/33 (30%), Gaps = 10/33 (30%)
Query: 29 CNQCGACFHTKCHSQLP----------CKRCIR 51
C+ C FH KC P C C
Sbjct: 25 CDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN 57
>d1xeoa1 d.167.1.1 (A:1-164) Peptide deformylase {Escherichia coli
[TaxId: 562]}
Length = 164
Score = 26.6 bits (58), Expect = 7.6
Identities = 17/104 (16%), Positives = 28/104 (26%), Gaps = 4/104 (3%)
Query: 439 HEVNLQSYTFENIMYHVLHERIPLHSWKLLTCWWEHRTHLYKWMTVEHYLIRVTGIIRLI 498
E + N + L + + + G +
Sbjct: 63 SENRDERLVLINPELLEKSGETGIEEGCLSIPEQRALVPRAEKVKIRAL--DRDGKPFEL 120
Query: 499 EQLDFIGRTS--EMARLFGIQFYEVLSRGSQFRVESIMLRLSRL 540
E + EM L G F + LS Q R+ + +L RL
Sbjct: 121 EADGLLAICIQHEMDHLVGKLFMDYLSPLKQQRIRQKVEKLDRL 164
>d1tm0a_ d.21.1.3 (A:) Proline racemase {Brucella melitensis [TaxId:
29459]}
Length = 332
Score = 27.2 bits (60), Expect = 7.7
Identities = 10/43 (23%), Positives = 19/43 (44%), Gaps = 8/43 (18%)
Query: 522 LSRGSQFRVESIM--------LRLSRLNNFVAVSPSIKQRAHM 556
+ G +F +S++ ++ L A+SP I RA +
Sbjct: 272 MKAGERFIGKSVLGTEFHCRLDKVLELGGKPAISPIISGRAWV 314
>d1v5na_ g.49.1.3 (A:) Pdi-like hypothetical protein At1g60420
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 89
Score = 25.7 bits (56), Expect = 8.0
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 6/40 (15%)
Query: 1 LCLARGFICELCNSEEVIFPWQLSSVHRCNQCGACFHTKC 40
L + + C+ C E W + C++C H KC
Sbjct: 42 LTRVQVYTCDKCE--EEGTIW----SYHCDECDFDLHAKC 75
>d1weea_ g.50.1.2 (A:) PHD finger protein At1g33420 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 72
Score = 25.0 bits (54), Expect = 9.9
Identities = 10/34 (29%), Positives = 14/34 (41%), Gaps = 9/34 (26%)
Query: 29 CNQCGACFHTKCH----SQLP-----CKRCIRMR 53
C+ CG HT+C + C RCI +
Sbjct: 34 CDGCGVWHHTRCIGINNADALPSKFLCFRCIELS 67
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.323 0.138 0.422
Gapped
Lambda K H
0.267 0.0476 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,699,137
Number of extensions: 133640
Number of successful extensions: 398
Number of sequences better than 10.0: 1
Number of HSP's gapped: 385
Number of HSP's successfully gapped: 49
Length of query: 696
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 604
Effective length of database: 1,144,436
Effective search space: 691239344
Effective search space used: 691239344
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 56 (26.0 bits)