Query psy5928
Match_columns 76
No_of_seqs 101 out of 1080
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 22:02:14 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5928.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/5928hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00014 myosin-A; Provisional 100.0 4.7E-30 1E-34 188.3 7.7 74 2-75 477-550 (821)
2 cd01387 MYSc_type_XV Myosin mo 100.0 8E-30 1.7E-34 184.5 7.9 75 1-75 375-449 (677)
3 cd01383 MYSc_type_VIII Myosin 100.0 8E-30 1.7E-34 184.5 7.9 74 2-75 380-453 (677)
4 cd01382 MYSc_type_VI Myosin mo 100.0 1.6E-29 3.5E-34 183.8 7.5 74 2-75 412-485 (717)
5 cd01384 MYSc_type_XI Myosin mo 100.0 1.9E-29 4.2E-34 182.4 7.8 74 2-75 382-455 (674)
6 cd01385 MYSc_type_IX Myosin mo 100.0 1.8E-29 4E-34 183.0 7.5 73 3-75 393-465 (692)
7 COG5022 Myosin heavy chain [Cy 100.0 8.4E-30 1.8E-34 191.5 5.9 73 2-74 443-516 (1463)
8 cd01381 MYSc_type_VII Myosin m 100.0 2E-29 4.4E-34 182.3 7.6 74 2-75 377-450 (671)
9 cd01379 MYSc_type_III Myosin m 100.0 2.6E-29 5.6E-34 181.3 7.6 74 2-75 388-461 (653)
10 KOG0164|consensus 100.0 9.7E-30 2.1E-34 182.9 4.8 76 1-76 389-464 (1001)
11 cd01378 MYSc_type_I Myosin mot 100.0 3.8E-29 8.3E-34 180.9 7.9 72 2-73 381-453 (674)
12 cd01377 MYSc_type_II Myosin mo 100.0 1.4E-28 3.1E-33 178.4 7.9 73 2-74 389-462 (693)
13 cd01380 MYSc_type_V Myosin mot 100.0 2E-28 4.3E-33 177.6 7.3 73 2-75 383-455 (691)
14 smart00242 MYSc Myosin. Large 100.0 3E-28 6.4E-33 176.4 7.9 73 2-74 384-456 (677)
15 cd00124 MYSc Myosin motor doma 99.9 9.1E-28 2E-32 173.9 7.1 74 2-75 377-450 (679)
16 cd01386 MYSc_type_XVIII Myosin 99.9 2.7E-27 5.8E-32 173.1 7.0 74 2-75 394-482 (767)
17 PF00063 Myosin_head: Myosin h 99.9 5.3E-27 1.2E-31 169.7 7.5 75 1-75 378-453 (689)
18 KOG0161|consensus 99.9 6.1E-26 1.3E-30 175.1 4.9 73 2-75 463-536 (1930)
19 KOG0163|consensus 99.9 2.2E-24 4.7E-29 156.5 6.1 73 2-74 466-538 (1259)
20 KOG0162|consensus 99.9 1.1E-22 2.3E-27 147.3 4.2 73 1-73 397-470 (1106)
21 KOG0160|consensus 99.8 7.3E-22 1.6E-26 145.1 5.0 72 2-74 383-454 (862)
22 KOG4229|consensus 99.8 2.4E-20 5.2E-25 139.5 4.0 74 2-75 442-515 (1062)
23 COG2153 ElaA Predicted acyltra 37.3 15 0.00032 22.9 0.6 28 12-39 117-144 (155)
24 smart00394 RIIa RIIalpha, Regu 35.4 50 0.0011 15.2 2.2 16 3-19 20-35 (38)
25 KOG0388|consensus 31.7 28 0.00061 27.5 1.3 38 25-75 563-600 (1185)
26 PF10875 DUF2670: Protein of u 23.5 59 0.0013 19.7 1.5 15 49-63 3-17 (139)
27 PF08194 DIM: DIM protein; In 23.4 22 0.00047 16.8 -0.3 16 61-76 11-26 (36)
28 PF12579 DUF3755: Protein of u 23.1 31 0.00068 16.1 0.2 25 50-74 7-31 (35)
29 PF09084 NMT1: NMT1/THI5 like; 22.4 76 0.0017 19.4 1.9 34 24-57 7-40 (216)
30 PF15216 TSLP: Thymic stromal 20.6 2.1E+02 0.0046 17.2 5.0 55 15-69 9-69 (124)
No 1
>PTZ00014 myosin-A; Provisional
Probab=99.96 E-value=4.7e-30 Score=188.34 Aligned_cols=74 Identities=35% Similarity=0.530 Sum_probs=72.0
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.|+++|.+|||.|..++|.||++|+|||+++|.|||++|||||+.|+.
T Consensus 477 ~NSfEQLcINy~NEkLQq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~ 550 (821)
T PTZ00014 477 NNSLEQLFINITNEMLQKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGG 550 (821)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999864
No 2
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=99.96 E-value=8e-30 Score=184.49 Aligned_cols=75 Identities=52% Similarity=0.825 Sum_probs=72.3
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
..|||||||||||||+||++|++++|+.++++|.+|||.|..++|.||++|+|||+++|.|||++|||||+.|+.
T Consensus 375 ~~NsfEQLcINyaNEkLQ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~ 449 (677)
T cd01387 375 SFNSFEQLCINYANENLQYLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQA 449 (677)
T ss_pred CCCCHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999998863
No 3
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=99.96 E-value=8e-30 Score=184.46 Aligned_cols=74 Identities=53% Similarity=0.965 Sum_probs=71.7
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.|+++|..|||.|..++|.||++|+|||+++|.|||++|||||+.|+.
T Consensus 380 ~NsfEQLcINyaNEkLQ~~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~ 453 (677)
T cd01383 380 KNSFEQFCINYANERLQQHFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNA 453 (677)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998763
No 4
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=99.96 E-value=1.6e-29 Score=183.77 Aligned_cols=74 Identities=41% Similarity=0.798 Sum_probs=71.8
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|+|||||||||||+||++|++++|..++++|.+|||.|.+++|.||++|+|||+++|.|||++|||||+.|+.
T Consensus 412 ~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDee~~~p~~ 485 (717)
T cd01382 412 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDEENRLPQP 485 (717)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998753
No 5
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=99.96 E-value=1.9e-29 Score=182.41 Aligned_cols=74 Identities=51% Similarity=0.845 Sum_probs=71.8
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|+|||||||||||+||++|++++|+.++++|..|||.|..++|.||++|+|||+++|.|||++|||||+.|+.
T Consensus 382 ~NsfEQLcINyaNEkLQ~~f~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~ 455 (674)
T cd01384 382 TNSFEQFCINLTNEKLQQHFNQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKS 455 (674)
T ss_pred cCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998763
No 6
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=99.96 E-value=1.8e-29 Score=182.95 Aligned_cols=73 Identities=59% Similarity=1.079 Sum_probs=71.2
Q ss_pred CchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 3 ENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 3 n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
|+|||||||||||+||++|++++|+.++++|..|||.|..++|.||++|+|||+++|.|||++|||||+.|+.
T Consensus 393 NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~ 465 (692)
T cd01385 393 NSFEQLCINYANEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHA 465 (692)
T ss_pred CCHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998764
No 7
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=99.96 E-value=8.4e-30 Score=191.45 Aligned_cols=73 Identities=52% Similarity=0.978 Sum_probs=70.0
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCchhhchHHHhhccC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKSCE 74 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~-~p~Gll~iLdee~~~~~ 74 (76)
.|||||||||||||+||++|++++|+.||++|.+|||.|.+|+|.||++|+|||++ .|.|||++|||||..|-
T Consensus 443 kNSFEQlCINYtNEKLQQ~Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~ 516 (1463)
T COG5022 443 KNSFEQLCINYTNEKLQQFFNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPH 516 (1463)
T ss_pred cCcHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCC
Confidence 59999999999999999999999999999999999999999999999999999997 47899999999998774
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=99.96 E-value=2e-29 Score=182.26 Aligned_cols=74 Identities=50% Similarity=0.856 Sum_probs=71.7
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.++++|..|||.|.+++|.||++|+|||+++|.|||++|||||+.|+.
T Consensus 377 ~NsfEQLcINy~NEkLQ~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~ 450 (671)
T cd01381 377 VNSFEQLCINFANENLQQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKG 450 (671)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998763
No 9
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=99.96 E-value=2.6e-29 Score=181.27 Aligned_cols=74 Identities=49% Similarity=0.863 Sum_probs=71.5
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|..|+++|.+|||+|..++|.||++|+|||+++|.|||++|||||+.|+.
T Consensus 388 ~NsfEQLcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~ 461 (653)
T cd01379 388 KNSFEQLCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQA 461 (653)
T ss_pred CCCHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999998753
No 10
>KOG0164|consensus
Probab=99.96 E-value=9.7e-30 Score=182.86 Aligned_cols=76 Identities=46% Similarity=0.806 Sum_probs=74.4
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCCC
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCETV 76 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~~ 76 (76)
+.|||||||||||||+||+.|++.+++.||+||.+|||.|.+++|.+|.-++||++.+..||++||||||++||+|
T Consensus 389 ~~NSFEQfcINYCNEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~v 464 (1001)
T KOG0164|consen 389 QDNSFEQFCINYCNEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTV 464 (1001)
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCcc
Confidence 5799999999999999999999999999999999999999999999999999999999999999999999999997
No 11
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=99.96 E-value=3.8e-29 Score=180.91 Aligned_cols=72 Identities=44% Similarity=0.851 Sum_probs=70.7
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCchhhchHHHhhcc
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKSC 73 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~-~p~Gll~iLdee~~~~ 73 (76)
.|||||||||||||+||++|++++|+.++++|.+|||.|..++|.||++|+|||++ +|.|||++|||||+.|
T Consensus 381 ~NsfEQLcINyaNEkLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p 453 (674)
T cd01378 381 KNSFEQFCINYVNEKLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATP 453 (674)
T ss_pred cccHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCC
Confidence 69999999999999999999999999999999999999999999999999999999 8999999999999998
No 12
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=99.95 E-value=1.4e-28 Score=178.35 Aligned_cols=73 Identities=48% Similarity=0.873 Sum_probs=70.6
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhchHHHhhccC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKSCE 74 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~~p~Gll~iLdee~~~~~ 74 (76)
.|+|||||||||||+||++|++++|+.|+++|.+|||.|..++| .||++|+|||+++|.|||++|||||+.|+
T Consensus 389 ~NsfEQLcINyaNEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~ 462 (693)
T cd01377 389 FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPK 462 (693)
T ss_pred CCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCC
Confidence 69999999999999999999999999999999999999999999 59999999999999999999999999874
No 13
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=99.95 E-value=2e-28 Score=177.56 Aligned_cols=73 Identities=53% Similarity=0.944 Sum_probs=70.1
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|+|||||||||||+||++|++++|+.|+++|.+|||.|..++|.||++|+|||++ |.|||++|||||+.|+.
T Consensus 383 ~NsfEQLcINyaNEkLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~-~~Gil~lLdee~~~p~~ 455 (691)
T cd01380 383 KNSFEQFCINYANEKLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIES-KLGILSLLDEECRLPKG 455 (691)
T ss_pred CCCHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhC-CCchHHHhHHhhcCCCC
Confidence 69999999999999999999999999999999999999999999999999999996 69999999999998753
No 14
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=99.95 E-value=3e-28 Score=176.39 Aligned_cols=73 Identities=56% Similarity=1.026 Sum_probs=71.2
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCE 74 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~ 74 (76)
.|+|||||||||||+||++|++++|..++++|.+|||.|..++|.||++|+|||+++|.||+++|||||+.|+
T Consensus 384 ~NsfEQLcINyaNEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~ 456 (677)
T smart00242 384 VNSFEQLCINYANEKLQQFFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPK 456 (677)
T ss_pred cCCHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999875
No 15
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=99.94 E-value=9.1e-28 Score=173.87 Aligned_cols=74 Identities=55% Similarity=0.980 Sum_probs=71.6
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|+|||||||||||+||++|++++|+.++++|..|||.|..++|.||++|+|||+++|.||+++|||||+.|+.
T Consensus 377 ~NsfEQLcINy~NEkLq~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~ 450 (679)
T cd00124 377 KNSFEQLCINYANEKLQQFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKG 450 (679)
T ss_pred CCCHHHHhcccchHHHHHHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCC
Confidence 59999999999999999999999999999999999999999999999999999999999999999999998853
No 16
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=99.94 E-value=2.7e-27 Score=173.06 Aligned_cols=74 Identities=32% Similarity=0.521 Sum_probs=68.7
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCC--------------Cchhhch
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKP--------------NGLLCVL 66 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~~p--------------~Gll~iL 66 (76)
.|+|||||||||||+||++|++++|+.|+++|..|||+|+...+ .||++|++||+++| .|||++|
T Consensus 394 ~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~lL 473 (767)
T cd01386 394 AATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWLL 473 (767)
T ss_pred CCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhhh
Confidence 48999999999999999999999999999999999999987666 79999999999865 5999999
Q ss_pred HHHhhccCC
Q psy5928 67 DDQAKSCET 75 (76)
Q Consensus 67 dee~~~~~~ 75 (76)
||||+.|+.
T Consensus 474 DEec~~p~~ 482 (767)
T cd01386 474 DEEALVPGS 482 (767)
T ss_pred hHhhcCCCC
Confidence 999999874
No 17
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=99.94 E-value=5.3e-27 Score=169.73 Aligned_cols=75 Identities=55% Similarity=0.980 Sum_probs=70.3
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
..|+|||||||||||+||++|++++|..++++|.+|||.|..++| .||.+|+|||+++|.|||++|||||+.|+.
T Consensus 378 ~~N~fEQLciNyanErLq~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~ 453 (689)
T PF00063_consen 378 SVNSFEQLCINYANERLQQFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRG 453 (689)
T ss_dssp SSB-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS
T ss_pred cccccccceeeeccccccceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccc
Confidence 369999999999999999999999999999999999999999999 999999999999999999999999998863
No 18
>KOG0161|consensus
Probab=99.92 E-value=6.1e-26 Score=175.14 Aligned_cols=73 Identities=48% Similarity=0.879 Sum_probs=70.5
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.||||||||||+||+||++|++++|..++++|.+|||.|.+++| .|-++|++||++ |+||+++|||||..|++
T Consensus 463 ~nSFEQLciNytnEkLQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkA 536 (1930)
T KOG0161|consen 463 FNSFEQLCINYTNEKLQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKA 536 (1930)
T ss_pred cCCHHHHHHHHHHHHHHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCC
Confidence 48999999999999999999999999999999999999999999 799999999995 88999999999999985
No 19
>KOG0163|consensus
Probab=99.90 E-value=2.2e-24 Score=156.50 Aligned_cols=73 Identities=48% Similarity=0.847 Sum_probs=71.2
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCE 74 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~ 74 (76)
+|||||||||||||+||+||++++++.||+.|..||+.++.+.|.||++|++||+.+..|||.+||||.+.|.
T Consensus 466 ~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLDEEaklP~ 538 (1259)
T KOG0163|consen 466 VNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLDEEAKLPK 538 (1259)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhhhhccCCC
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999875
No 20
>KOG0162|consensus
Probab=99.86 E-value=1.1e-22 Score=147.26 Aligned_cols=73 Identities=40% Similarity=0.786 Sum_probs=69.6
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhc-CCCchhhchHHHhhcc
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG-KPNGLLCVLDDQAKSC 73 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~-~p~Gll~iLdee~~~~ 73 (76)
++||||||||||.||+||+.|++.+++.||++|.+|||.|.++.|.||.-++|||+. +|.||+++|||.|...
T Consensus 397 e~N~FEQ~CINfVNEKLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~ 470 (1106)
T KOG0162|consen 397 ENNGFEQFCINFVNEKLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATA 470 (1106)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHh
Confidence 479999999999999999999999999999999999999999999999999999997 6889999999999754
No 21
>KOG0160|consensus
Probab=99.85 E-value=7.3e-22 Score=145.08 Aligned_cols=72 Identities=57% Similarity=0.949 Sum_probs=69.4
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCE 74 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~ 74 (76)
.|+||||||||+||+||+.|.+|+|+.++++|..|+|.|..++|.||++|+++|++ |.|++++|||+|+.|-
T Consensus 383 ~nsfeQfcINyanEkLqq~fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~ 454 (862)
T KOG0160|consen 383 VNSFEQFCINYANEKLQQQFNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPK 454 (862)
T ss_pred cCcHHHhhhhhHHHHhhHHHHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCC
Confidence 68999999999999999999999999999999999999999999999999999997 9999999999997764
No 22
>KOG4229|consensus
Probab=99.80 E-value=2.4e-20 Score=139.46 Aligned_cols=74 Identities=54% Similarity=0.984 Sum_probs=71.9
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
+|+|||+|+|+|||++|.||.+++|..|+++|..|+|.|..+.|.||..|+++|..+|+||+.+||||+.+|++
T Consensus 442 ~nsfEq~~in~Ane~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~ 515 (1062)
T KOG4229|consen 442 RNSFEQLCINLANEQLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKA 515 (1062)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCch
Confidence 68999999999999999999999999999999999999999999999999999999999999999999998864
No 23
>COG2153 ElaA Predicted acyltransferase [General function prediction only]
Probab=37.35 E-value=15 Score=22.95 Aligned_cols=28 Identities=36% Similarity=0.502 Sum_probs=24.9
Q ss_pred HhhHHHHHHHHHHHhHHHHHHhhhcCCc
Q psy5928 12 YANEHLQYYFNQHVFQYEQEEYNKEGIR 39 (76)
Q Consensus 12 ~~nE~l~~~~~~~~f~~~~~~y~~Egi~ 39 (76)
-|.+.||.+|-..-|..-.++|.+.||+
T Consensus 117 ~AQahLq~fYa~~GFv~~~e~yledGIp 144 (155)
T COG2153 117 GAQAHLQDFYASFGFVRVGEEYLEDGIP 144 (155)
T ss_pred ehHHHHHHHHHHhCcEEcCchhhcCCCC
Confidence 3678899999999999999999999985
No 24
>smart00394 RIIa RIIalpha, Regulatory subunit portion of type II PKA R-subunit. RIIalpha, Regulatory subunit portion of type II PKA R-subunit. Contains dimerisation interface and binding site for A-kinase-anchoring proteins (AKAPs).
Probab=35.35 E-value=50 Score=15.17 Aligned_cols=16 Identities=25% Similarity=0.455 Sum_probs=9.6
Q ss_pred CchhHHHHHHhhHHHHH
Q psy5928 3 ENFEQLCINYANEHLQY 19 (76)
Q Consensus 3 n~~eql~in~~nE~l~~ 19 (76)
...-+||.+|- +++..
T Consensus 20 ~d~~~f~~~yF-~kL~~ 35 (38)
T smart00394 20 SDLVQFAADYF-EKLEE 35 (38)
T ss_pred CcHHHHHHHHH-HHHHH
Confidence 34557777777 55543
No 25
>KOG0388|consensus
Probab=31.67 E-value=28 Score=27.51 Aligned_cols=38 Identities=24% Similarity=0.542 Sum_probs=21.9
Q ss_pred HhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 25 VFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 25 ~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
+|....+||+--|+.| .+.|.++ ||-.||.||--...|
T Consensus 563 il~ctLKEYQlkGLnW----------LvnlYdq---GiNGILADeMGLGKT 600 (1185)
T KOG0388|consen 563 ILKCTLKEYQLKGLNW----------LVNLYDQ---GINGILADEMGLGKT 600 (1185)
T ss_pred hhhhhhHHHhhccHHH----------HHHHHHc---cccceehhhhccchh
Confidence 4444556676667666 3455554 666677666443333
No 26
>PF10875 DUF2670: Protein of unknown function (DUF2670); InterPro: IPR022714 This bacterial family of proteins has no known function and appears to be restricted to Rickettsiaceae.
Probab=23.46 E-value=59 Score=19.69 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=11.5
Q ss_pred HHHHHHHhcCCCchh
Q psy5928 49 TLCLQLVEGKPNGLL 63 (76)
Q Consensus 49 ~~~l~li~~~p~Gll 63 (76)
+..-+||..+|||++
T Consensus 3 qalrrlIaaNPMg~f 17 (139)
T PF10875_consen 3 QALRRLIAANPMGFF 17 (139)
T ss_pred HHHHHHHhhCCchhh
Confidence 345678999999976
No 27
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=23.43 E-value=22 Score=16.85 Aligned_cols=16 Identities=19% Similarity=0.086 Sum_probs=9.4
Q ss_pred chhhchHHHhhccCCC
Q psy5928 61 GLLCVLDDQAKSCETV 76 (76)
Q Consensus 61 Gll~iLdee~~~~~~~ 76 (76)
|++.++.-...+||+|
T Consensus 11 ~lLal~~a~~~~pG~V 26 (36)
T PF08194_consen 11 LLLALAAAVPATPGNV 26 (36)
T ss_pred HHHHHHhcccCCCCeE
Confidence 5566555555667665
No 28
>PF12579 DUF3755: Protein of unknown function (DUF3755); InterPro: IPR022228 This domain family is found in eukaryotes, and is approximately 40 amino acids in length. There is a single completely conserved residue N that may be functionally important.
Probab=23.14 E-value=31 Score=16.09 Aligned_cols=25 Identities=16% Similarity=0.218 Sum_probs=17.2
Q ss_pred HHHHHHhcCCCchhhchHHHhhccC
Q psy5928 50 LCLQLVEGKPNGLLCVLDDQAKSCE 74 (76)
Q Consensus 50 ~~l~li~~~p~Gll~iLdee~~~~~ 74 (76)
.-++|+.+-...|.+||.+-+..||
T Consensus 7 eNidLf~~~R~NI~~il~~m~~mpg 31 (35)
T PF12579_consen 7 ENIDLFCQTRDNILAILNDMNDMPG 31 (35)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcchh
Confidence 3456666655678888888777666
No 29
>PF09084 NMT1: NMT1/THI5 like; InterPro: IPR015168 This entry is found in the NMT1 and THI5 proteins. These proteins are proposed to be required for the biosynthesis of the pyrimidine moiety of thiamine [, , ]. They are regulated by thiamine []. ; PDB: 2X26_A 3E4R_A 3KSJ_A 3KSX_A 3UIF_A 4DDD_A 1US4_A 1US5_A 3IX1_B 2X7P_A ....
Probab=22.42 E-value=76 Score=19.44 Aligned_cols=34 Identities=15% Similarity=0.207 Sum_probs=26.5
Q ss_pred HHhHHHHHHhhhcCCcccccccCChHHHHHHHhc
Q psy5928 24 HVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEG 57 (76)
Q Consensus 24 ~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~ 57 (76)
.....++..|+++|++...+.+.+...+++.+..
T Consensus 7 ~~vA~~~G~f~~~gl~ve~~~~~~~~~~~~~l~~ 40 (216)
T PF09084_consen 7 LYVAQEKGYFKEEGLDVEIVFFGGGGDVLEALAS 40 (216)
T ss_dssp HHHHHHTTHHHHTTEEEEEEEESSHHHHHHHHHT
T ss_pred HHHHHHcCCCccCeEEEEEEEecChhHHHHHHhc
Confidence 3455567788999999877777777888888876
No 30
>PF15216 TSLP: Thymic stromal lymphopoietin
Probab=20.56 E-value=2.1e+02 Score=17.22 Aligned_cols=55 Identities=16% Similarity=0.312 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHhHHHHHHhhh-cCCccccccc-CChHHHHHHHhc----CCCchhhchHHH
Q psy5928 15 EHLQYYFNQHVFQYEQEEYNK-EGIRWRHIEF-SDNTLCLQLVEG----KPNGLLCVLDDQ 69 (76)
Q Consensus 15 E~l~~~~~~~~f~~~~~~y~~-Egi~~~~~~~-~~n~~~l~li~~----~p~Gll~iLdee 69 (76)
|+++.-|...+|..-.+.... -......+-| .+.++|+..|++ +..|--|+.+|.
T Consensus 9 ~kI~k~Y~~~I~~~L~~ymngtkst~FN~~~~C~~r~~CLtkIe~~Tfnp~~gC~SLa~e~ 69 (124)
T PF15216_consen 9 EKIQKIYENIIFHDLLKYMNGTKSTEFNNTVYCEDRPDCLTKIERLTFNPTPGCPSLAKET 69 (124)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCcccccCccccCCchhHHHHHHHHhcCCCCCchhHHHHH
Confidence 678888888888754332221 2234444444 678889887775 345777766654
Done!