Query psy5928
Match_columns 76
No_of_seqs 101 out of 1080
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 22:02:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy5928.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/5928hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2v26_A Myosin VI; calmodulin-b 100.0 3.7E-31 1.3E-35 192.6 8.1 74 2-75 461-534 (784)
2 1lkx_A Myosin IE heavy chain; 100.0 4.8E-31 1.6E-35 190.2 7.3 75 1-75 394-468 (697)
3 4anj_A Unconventional myosin-V 100.0 1.4E-30 4.8E-35 193.6 8.1 75 1-75 464-538 (1052)
4 1w7j_A Myosin VA; motor protei 100.0 3.6E-30 1.2E-34 187.6 8.3 74 1-75 445-518 (795)
5 1w9i_A Myosin II heavy chain; 100.0 5.5E-30 1.9E-34 186.1 8.2 75 1-75 462-538 (770)
6 4db1_A Myosin-7; S1DC, cardiac 100.0 5.6E-30 1.9E-34 186.3 6.9 74 1-75 469-543 (783)
7 1kk8_A Myosin heavy chain, str 100.0 9.9E-30 3.4E-34 186.0 7.3 73 2-75 469-542 (837)
8 2dfs_A Myosin-5A; myosin-V, in 100.0 2.6E-29 8.8E-34 187.4 8.0 73 2-75 446-518 (1080)
9 2ycu_A Non muscle myosin 2C, a 100.0 3.2E-29 1.1E-33 185.8 7.6 74 2-75 442-518 (995)
10 1g8x_A Myosin II heavy chain f 100.0 5.6E-29 1.9E-33 184.7 8.4 74 2-75 463-538 (1010)
11 1i84_S Smooth muscle myosin he 99.9 1.2E-28 4.2E-33 184.6 7.0 74 2-75 473-549 (1184)
12 1y4m_A HERV-FRD_6P24.1 proviru 47.9 5.7 0.00019 19.7 0.6 26 47-72 25-50 (53)
13 1mof_A Moloney murine leukemia 41.7 7.9 0.00027 19.3 0.6 26 47-72 27-52 (55)
No 1
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=99.97 E-value=3.7e-31 Score=192.62 Aligned_cols=74 Identities=39% Similarity=0.771 Sum_probs=72.1
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.||++|.+|||.|.+++|.||++|+|||+++|+|||+||||||+.|+.
T Consensus 461 ~NsFEQlcINyaNEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~DN~~~idLie~kp~GIlslLDEe~~~p~~ 534 (784)
T 2v26_A 461 HNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP 534 (784)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC
T ss_pred cCCHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHhcCCCcccccccChHHHHHHHhhccccHHHHHHHHhcCCCC
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999874
No 2
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=99.97 E-value=4.8e-31 Score=190.24 Aligned_cols=75 Identities=41% Similarity=0.719 Sum_probs=72.1
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
..|+|||||||||||+||++|++++|+.||++|.+|||.|.+++|.||++|+|||+++|+|||++|||||+.|++
T Consensus 394 ~~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dN~~~idLie~kp~GilslLDEec~~p~~ 468 (697)
T 1lkx_A 394 QNNSFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLISLLDEACLIAKS 468 (697)
T ss_dssp SSBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHTTSSSSSHHHHHHHHHHSTTC
T ss_pred CcCCHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCHHHHHHHhcccCChhhhhHHhhCCCCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999998763
No 3
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=99.96 E-value=1.4e-30 Score=193.56 Aligned_cols=75 Identities=39% Similarity=0.752 Sum_probs=72.6
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
..|||||||||||||+||++|++++|+.|+++|.+|||.|..++|.||++|+|||+++|+|||++|||||+.|++
T Consensus 464 ~~NsFEQLCINyaNEkLQq~Fn~~vF~~EqeeY~~EgI~w~~I~f~DN~~~idLie~kp~GIl~lLDEe~~~p~~ 538 (1052)
T 4anj_A 464 EHNSFEQFCINYCNEKLQQFFNERILKEEQELYQKEGLGVNEVHYVDNQDCIDLIEARLVGILDILDEENRLPQP 538 (1052)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTCCCCCCCCCCCHHHHHHHHCTTTSHHHHHHHHHHSSSC
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCcccCCcCCcHHHHHHHHcCcccHHHHHHHHhcCCCC
Confidence 369999999999999999999999999999999999999999999999999999999999999999999999874
No 4
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=99.96 E-value=3.6e-30 Score=187.60 Aligned_cols=74 Identities=53% Similarity=0.849 Sum_probs=70.9
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
..|||||||||||||+||++|++++|+.||++|.+|||+|..++|.||++|+|||+++ +|||+||||||+.|+.
T Consensus 445 ~~NsFEQlcINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~DN~~~idLie~~-~GIlslLDEec~~p~~ 518 (795)
T 1w7j_A 445 EINSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKG 518 (795)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCGGGCCCCCCHHHHHHHHST-TSHHHHHHHHHTSTTC
T ss_pred CcCCHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcCCcccccCccccHHHHHHHHhc-CCHHHhhhhhccCCCC
Confidence 3699999999999999999999999999999999999999999999999999999986 9999999999999864
No 5
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=99.96 E-value=5.5e-30 Score=186.10 Aligned_cols=75 Identities=48% Similarity=0.891 Sum_probs=71.2
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC-CCchhhchHHHhhccCC
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK-PNGLLCVLDDQAKSCET 75 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~~-p~Gll~iLdee~~~~~~ 75 (76)
..|||||||||||||+||++|++++|+.||++|.+|||.|..++| .||++|+|||+++ |+|||++|||||+.|++
T Consensus 462 ~~NsFEQlCINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek~~p~GilslLDEec~~p~~ 538 (770)
T 1w9i_A 462 KVNSFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNA 538 (770)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCCGGGGGHHHHHHHHCTTTTCHHHHHHHHHSSSSC
T ss_pred ccCCHHHHHHHhhHHHHHHHHHhhhhHHHHHHhhccCCCceeeccccCcHHHHHHHhCCCCCchhhhhhhhhCCCCC
Confidence 369999999999999999999999999999999999999999999 5999999999984 99999999999999864
No 6
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=99.96 E-value=5.6e-30 Score=186.33 Aligned_cols=74 Identities=46% Similarity=0.892 Sum_probs=69.4
Q ss_pred CCCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 1 MDENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 1 ~~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
..|+|||||||||||+||++|++++|+.||++|.+|||.|..++| .||++|+|||++ |+|||++|||||+.|++
T Consensus 469 ~~NsFEQlCINyaNEkLQq~Fn~~~F~~EqeeY~~EgI~w~~i~f~~Dn~~~idLiek-p~Gil~lLDEec~~p~~ 543 (783)
T 4db1_A 469 DFNSFEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWTFIDFGMDLQACIDLIEK-PMGIMSILEEECMFPKA 543 (783)
T ss_dssp SSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCCGGGGGHHHHHHHHS-TTSHHHHHCC-TTCTTC
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhcCCCcccccccCChHHHHHHHhC-CCchHhhhhHHhcCCCC
Confidence 369999999999999999999999999999999999999999999 599999999995 89999999999999863
No 7
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=99.96 E-value=9.9e-30 Score=186.05 Aligned_cols=73 Identities=49% Similarity=0.950 Sum_probs=70.1
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.||++|.+|||.|.+++| .||++|+|||++ |+|||++|||||+.|+.
T Consensus 469 ~NsFEQlcINyaNEkLQq~Fn~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idLiek-p~GIlslLDEec~~p~~ 542 (837)
T 1kk8_A 469 FNSFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEK-PMGILSILEEECMFPKA 542 (837)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSCCCCHHHHHHHHHHHS-TTSHHHHHHHHTTCTTC
T ss_pred cccHHHHHHHHhhHHHHHHHHHhhhHHHHHHhhhcCCceeecccccCHHHHHHHHhc-CCcHHHHHHHHhcCCCC
Confidence 69999999999999999999999999999999999999999999 599999999996 99999999999999864
No 8
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=99.96 E-value=2.6e-29 Score=187.36 Aligned_cols=73 Identities=53% Similarity=0.869 Sum_probs=70.5
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCcccccccCChHHHHHHHhcCCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~~~n~~~l~li~~~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.|+++|..|||.|.+++|.||++|+|||+++ +|||+||||||+.|++
T Consensus 446 ~NsFEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~dn~~~idlie~~-~Gil~lLdee~~~p~~ 518 (1080)
T 2dfs_A 446 INSFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVLDLLDEECKMPKG 518 (1080)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCCCCCCCHHHHHHHHST-TSHHHHHHHHTTSTTC
T ss_pred cCCHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhcCCccccccccccHHHHHHHhcC-CceeeeccccccCCCC
Confidence 699999999999999999999999999999999999999999999999999999985 9999999999999864
No 9
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=99.96 E-value=3.2e-29 Score=185.79 Aligned_cols=74 Identities=47% Similarity=0.863 Sum_probs=70.8
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc--CCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG--KPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~--~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.|+++|..|||.|.+++| .||++|+|||++ +|+|||++|||||+.|++
T Consensus 442 ~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~p~Gil~lLdee~~~p~~ 518 (995)
T 2ycu_A 442 LNSFEQLCINYTNEKLQQLFNHTMFVLEQEEYQREGIPWTFLDFGLDLQPCIDLIERPANPPGLLALLDEECWFPKA 518 (995)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCSCCCHHHHHHHHCCSSSCCHHHHHHHSSSSTTC
T ss_pred cchHHHHHHHhhHHHHHHHHHHhhhHHHHHHHhccCCCccccccccChHHHHHHHhccCCCCchhhhhHHHhcCCCC
Confidence 69999999999999999999999999999999999999999999 699999999997 489999999999999863
No 10
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=99.95 E-value=5.6e-29 Score=184.68 Aligned_cols=74 Identities=49% Similarity=0.899 Sum_probs=70.9
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhc-CCCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~-~p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.|+++|.+|||.|.+++| .||++|+|||++ +|+|||++|||||+.|++
T Consensus 463 ~NsfEQlcINy~NEkLQq~F~~~~f~~EqeeY~~EgI~w~~i~f~~dn~~~idlie~~~~~Gil~lLdee~~~p~~ 538 (1010)
T 1g8x_A 463 VNSFEQLCINYTNEKLQQFFNHHMFKVEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPGILALLDEQSVFPNA 538 (1010)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCCSHHHHHHHHCTTTTCHHHHHHHHTTSSSC
T ss_pred cCcHHHHHHHhhhHHHHHHHHHHhhHHHHHHhhccCCCccccccccChHHHHHHHhcCCCCeeehhhhHHhCCCCC
Confidence 69999999999999999999999999999999999999999999 599999999998 499999999999999874
No 11
>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A
Probab=99.95 E-value=1.2e-28 Score=184.59 Aligned_cols=74 Identities=47% Similarity=0.863 Sum_probs=69.4
Q ss_pred CCchhHHHHHHhhHHHHHHHHHHHhHHHHHHhhhcCCccccccc-CChHHHHHHHhcC--CCchhhchHHHhhccCC
Q psy5928 2 DENFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEGK--PNGLLCVLDDQAKSCET 75 (76)
Q Consensus 2 ~n~~eql~in~~nE~l~~~~~~~~f~~~~~~y~~Egi~~~~~~~-~~n~~~l~li~~~--p~Gll~iLdee~~~~~~ 75 (76)
.|||||||||||||+||++|++++|+.++++|..|||.|.+++| .||++|+|||+++ |+|||++|||||+.|++
T Consensus 473 ~NsfeQlciNy~nEkLq~~f~~~~f~~eq~ey~~Egi~~~~i~~~~dn~~~~~lie~~~~~~Gil~lLdee~~~p~~ 549 (1184)
T 1i84_S 473 INSFEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPGVLALLDEECWFPKA 549 (1184)
T ss_dssp SBCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCSCCCCCCCCCCHHHHHTTSCCSSSCCHHHHHHHTTSCTTC
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCccccccCCCcHHHHHHHhCCCCCCCchhhhhhhhCCCCC
Confidence 69999999999999999999999999999999999999999999 5999999999962 34999999999999863
No 12
>1y4m_A HERV-FRD_6P24.1 provirus ancestral ENV polyprotei; coat protein, membrane fusion, endogenous retrovirus, membra protein; 1.60A {Homo sapiens} SCOP: h.3.2.1
Probab=47.94 E-value=5.7 Score=19.72 Aligned_cols=26 Identities=19% Similarity=0.313 Sum_probs=21.6
Q ss_pred ChHHHHHHHhcCCCchhhchHHHhhc
Q psy5928 47 DNTLCLQLVEGKPNGLLCVLDDQAKS 72 (76)
Q Consensus 47 ~n~~~l~li~~~p~Gll~iLdee~~~ 72 (76)
.|.-.+|++..+..|+=..|.|+|-+
T Consensus 25 QNRraLDlL~a~~GG~C~~l~e~CC~ 50 (53)
T 1y4m_A 25 QNRRGLDMLTAAQGGICLALDEKCCF 50 (53)
T ss_dssp HHHHHHHHHTGGGTSHHHHTTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHhcCchhc
Confidence 46778999998888999999988853
No 13
>1mof_A Moloney murine leukemia virus P15; glycoprotein, coat protein, polyprotein, transmembrane, SIGN protein; 1.70A {Moloney murine leukemia virus} SCOP: h.3.2.1
Probab=41.66 E-value=7.9 Score=19.34 Aligned_cols=26 Identities=27% Similarity=0.280 Sum_probs=21.5
Q ss_pred ChHHHHHHHhcCCCchhhchHHHhhc
Q psy5928 47 DNTLCLQLVEGKPNGLLCVLDDQAKS 72 (76)
Q Consensus 47 ~n~~~l~li~~~p~Gll~iLdee~~~ 72 (76)
-|.-.+|++..+..|+=..|.|+|-+
T Consensus 27 QNRraLD~L~a~~GG~C~~l~e~CCf 52 (55)
T 1mof_A 27 QNRRGLDLLFLKEGGLCAALKEECAF 52 (55)
T ss_dssp HHHHHHHHHTGGGTCHHHHHTSCCCC
T ss_pred HHHHHHHHHHHHhCCccHHHcCchhc
Confidence 46778999998888999999888853
Done!