RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy5928
         (76 letters)



>d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium
           discoideum, class-I myosin MyoE [TaxId: 44689]}
          Length = 684

 Score = 70.5 bits (172), Expect = 9e-17
 Identities = 31/66 (46%), Positives = 45/66 (68%)

Query: 4   NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 63
           +FEQL IN+ NE LQ  F +   + EQEEY +EGI W++IE+ +N    +L+E KP GL+
Sbjct: 389 SFEQLNINFCNEKLQQLFIELTLKSEQEEYVREGIEWKNIEYFNNKPICELIEKKPIGLI 448

Query: 64  CVLDDQ 69
            +LD+ 
Sbjct: 449 SLLDEA 454


>d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 794

 Score = 67.1 bits (163), Expect = 1e-15
 Identities = 31/69 (44%), Positives = 42/69 (60%)

Query: 5   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLLC 64
           FEQLCIN+ NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+  
Sbjct: 426 FEQLCINFTNEKLQQFFNHHMFVLEQEEYKKEGIEWEFIDFGMDLAACIELIEKPMGIFS 485

Query: 65  VLDDQAKSC 73
           +L+++    
Sbjct: 486 ILEEECMFP 494


>d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay
           scallop (Aequipecten irradians) [TaxId: 31199]}
          Length = 789

 Score = 66.3 bits (161), Expect = 3e-15
 Identities = 33/66 (50%), Positives = 44/66 (66%)

Query: 4   NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 63
           +FEQLCINY NE LQ +FN H+F  EQEEY KEGI W  I+F  +      +  KP G+L
Sbjct: 423 SFEQLCINYTNERLQQFFNHHMFILEQEEYKKEGIAWEFIDFGMDLQMCIDLIEKPMGIL 482

Query: 64  CVLDDQ 69
            +L+++
Sbjct: 483 SILEEE 488


>d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken
           (Gallus gallus), pectoral muscle [TaxId: 9031]}
          Length = 710

 Score = 64.4 bits (156), Expect = 1e-14
 Identities = 35/72 (48%), Positives = 45/72 (62%), Gaps = 3/72 (4%)

Query: 5   FEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFS-DNTLCLQLVEG--KPNG 61
           FEQLCINY NE LQ  FN  +F  EQEEY +EGI W  I+F  D   C++L+E    P G
Sbjct: 398 FEQLCINYTNEKLQQLFNHTMFILEQEEYQREGIEWNFIDFGLDLQPCIELIERPTNPPG 457

Query: 62  LLCVLDDQAKSC 73
           +L +LD++    
Sbjct: 458 VLALLDEECWFP 469


>d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken
           (Gallus gallus), Va isoform [TaxId: 9031]}
          Length = 730

 Score = 64.0 bits (155), Expect = 2e-14
 Identities = 38/66 (57%), Positives = 47/66 (71%), Gaps = 1/66 (1%)

Query: 4   NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDNTLCLQLVEGKPNGLL 63
           +FEQ CINYANE LQ  FN HVF+ EQEEY KE I W  I+F DN  C+ L+E K  G+L
Sbjct: 386 SFEQFCINYANEKLQQQFNMHVFKLEQEEYMKEQIPWTLIDFYDNQPCINLIEAK-MGVL 444

Query: 64  CVLDDQ 69
            +LD++
Sbjct: 445 DLLDEE 450


>d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain
           {Dictyostelium discoideum [TaxId: 44689]}
          Length = 712

 Score = 59.7 bits (144), Expect = 5e-13
 Identities = 36/68 (52%), Positives = 49/68 (72%), Gaps = 2/68 (2%)

Query: 4   NFEQLCINYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEF-SDNTLCLQLVEG-KPNG 61
           +FEQLCINY NE LQ +FN H+F+ EQEEY KE I W  I+F  D+   + L++G +P G
Sbjct: 418 SFEQLCINYTNEKLQQFFNHHMFKLEQEEYLKEKINWTFIDFGLDSQATIDLIDGRQPPG 477

Query: 62  LLCVLDDQ 69
           +L +LD+Q
Sbjct: 478 ILALLDEQ 485


>d1e93a_ e.5.1.1 (A:) Catalase I {Proteus mirabilis [TaxId: 584]}
          Length = 476

 Score = 25.2 bits (55), Expect = 0.79
 Identities = 8/39 (20%), Positives = 10/39 (25%)

Query: 10  INYANEHLQYYFNQHVFQYEQEEYNKEGIRWRHIEFSDN 48
           I Y       +  Q  F+            W H E  D 
Sbjct: 377 ITYEPNSGGVFQEQPDFKEPPLSIEGAADHWNHREDEDY 415


>d1e6yc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanosarcina barkeri [TaxId: 2208]}
          Length = 247

 Score = 22.4 bits (48), Expect = 7.3
 Identities = 6/13 (46%), Positives = 9/13 (69%)

Query: 35 KEGIRWRHIEFSD 47
            G R R+I+F+D
Sbjct: 77 AAGDRVRYIQFAD 89


>d1hbnc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanobacterium thermoautotrophicum [TaxId:
          145262]}
          Length = 247

 Score = 22.4 bits (48), Expect = 7.8
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 35 KEGIRWRHIEFSD 47
          K G R R+I+F+D
Sbjct: 76 KAGDRVRYIQFTD 88


>d1e6vc_ d.58.31.1 (C:) Methyl-coenzyme M reductase gamma chain
          {Archaeon Methanopyrus kandleri [TaxId: 2320]}
          Length = 248

 Score = 22.4 bits (48), Expect = 7.9
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 35 KEGIRWRHIEFSD 47
          K G R R+I+F+D
Sbjct: 75 KAGDRIRYIQFTD 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.137    0.431 

Gapped
Lambda     K      H
   0.267   0.0521    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 291,796
Number of extensions: 11337
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 16
Length of query: 76
Length of database: 2,407,596
Length adjustment: 43
Effective length of query: 33
Effective length of database: 1,817,206
Effective search space: 59967798
Effective search space used: 59967798
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.4 bits)